Non-Coding RNA Search

Cow genome map


           Conread name:
           Tra1-TCH01A110102
        

               Conread position:
               1-162
               

               Cow position:
               chr1:72684762-72684610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               5, 29
               

               Conread position:
               1-198
               

               Cow position:
               chr1:3607873-3607688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               5, 43
               

               Conread position:
               1-219
               

               Cow position:
               chr1:87440537-87440325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 79
               

               Conread position:
               1-226
               

               Cow position:
               chr1:31272373-31272591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               5, 93
               

               Conread position:
               1-232
               

               Cow position:
               chr1:46035881-46036116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               9, 181
               

               Conread position:
               1-235
               

               Cow position:
               chr1:14308962-14309197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               1-235
               

               Cow position:
               chr1:33206811-33207030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               7, 61
               

               Conread position:
               1-238
               

               Cow position:
               chr1:88913389-88913155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               15, 97
               

               Conread position:
               1-240
               

               Cow position:
               chr1:57880714-57880953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               1-263
               

               Cow position:
               chr1:13810717-13810457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               9, 80
               

               Conread position:
               1-264
               

               Cow position:
               chr1:89498023-89497773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               96, 15
               

               Conread position:
               1-275
               

               Cow position:
               chr1:72103920-72103643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               9, 87
               

               Conread position:
               1-277
               

               Cow position:
               chr1:75142067-75141801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               210
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               1-291
               

               Cow position:
               chr1:77132677-77132385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               138, 15
               

               Conread position:
               1-296
               

               Cow position:
               chr1:43357941-43358239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               1-309
               

               Cow position:
               chr1:68951695-68951394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 86
               

               Conread position:
               1-310
               

               Cow position:
               chr1:70297348-70297033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 79
               

               Conread position:
               1-314
               

               Cow position:
               chr1:25281587-25281918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               1-316
               

               Cow position:
               chr1:21954153-21954462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               76, 100
               

               Conread position:
               1-316
               

               Cow position:
               chr1:31499695-31499383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 61
               

               Conread position:
               1-316
               

               Cow position:
               chr1:41181914-41181597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               7, 79
               

               Conread position:
               1-316
               

               Cow position:
               chr1:51445954-51445635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 57
               

               Conread position:
               1-317
               

               Cow position:
               chr1:6939565-6939884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               215
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               25, 80
               

               Conread position:
               1-317
               

               Cow position:
               chr1:71119590-71119266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               5, 84
               

               Conread position:
               1-318
               

               Cow position:
               chr1:1185799-1185493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 78
               

               Conread position:
               1-318
               

               Cow position:
               chr1:31765303-31765641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               15, 317
               

               Conread position:
               1-318
               

               Cow position:
               chr1:39426935-39427227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               9, 89
               

               Conread position:
               1-318
               

               Cow position:
               chr1:53595389-53595079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 54
               

               Conread position:
               1-318
               

               Cow position:
               chr1:69694924-69695255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               5, 54
               

               Conread position:
               1-318
               

               Cow position:
               chr1:71938439-71938757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               5, 80
               

               Conread position:
               1-318
               

               Cow position:
               chr1:95177008-95176689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               15, 93
               

               Conread position:
               1-325
               

               Cow position:
               chr1:95035282-95035607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               15, 39
               

               Conread position:
               1-326
               

               Cow position:
               chr1:22729125-22728793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               6, 36
               

               Conread position:
               1-326
               

               Cow position:
               chr1:63390697-63391026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 91
               

               Conread position:
               1-328
               

               Cow position:
               chr1:1053649-1053332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               138, 82
               

               Conread position:
               1-332
               

               Cow position:
               chr1:196935-197262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               21, 88
               

               Conread position:
               1-332
               

               Cow position:
               chr1:89937298-89937623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 79
               

               Conread position:
               1-334
               

               Cow position:
               chr1:64302174-64302496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               7, 92
               

               Conread position:
               1-337
               

               Cow position:
               chr1:55146868-55146536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 84
               

               Conread position:
               1-415
               

               Cow position:
               chr1:10719409-10719825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               9, 74
               

               Conread position:
               1-415
               

               Cow position:
               chr1:20384555-20384960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               138, 44
               

               Conread position:
               1-415
               

               Cow position:
               chr1:51394487-51394075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 87
               

               Conread position:
               1-415
               

               Cow position:
               chr1:52753090-52753501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               286
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               9, 129
               

               Conread position:
               1-415
               

               Cow position:
               chr1:97622150-97622537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               138, 22
               

               Conread position:
               2-240
               

               Cow position:
               chr1:69004461-69004232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               161, 35
               

               Conread position:
               2-318
               

               Cow position:
               chr1:36932221-36931913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 53
               

               Conread position:
               2-415
               

               Cow position:
               chr1:53308322-53308727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 86
               

               Conread position:
               2-415
               

               Cow position:
               chr1:55260368-55260765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               282
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               137, 33
               

               Conread position:
               3-203
               

               Cow position:
               chr1:95637898-95637702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               178, 75
               

               Conread position:
               3-303
               

               Cow position:
               chr1:54162738-54163041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               136, 76
               

               Conread position:
               3-309
               

               Cow position:
               chr1:85411643-85411342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               140, 42
               

               Conread position:
               3-318
               

               Cow position:
               chr1:43505595-43505277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               136, 107
               

               Conread position:
               3-318
               

               Cow position:
               chr1:81355637-81355949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 92
               

               Conread position:
               3-349
               

               Cow position:
               chr1:61737162-61736826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               65, 34
               

               Conread position:
               4-256
               

               Cow position:
               chr1:96304904-96305152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               92, 161
               

               Conread position:
               4-328
               

               Cow position:
               chr1:48730767-48731084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               243
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               136, 47
               

               Conread position:
               6-240
               

               Cow position:
               chr1:51417834-51417612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               133, 44
               

               Conread position:
               6-318
               

               Cow position:
               chr1:47658408-47658109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               133, 46
               

               Conread position:
               6-318
               

               Cow position:
               chr1:71257403-71257729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               28, 112
               

               Conread position:
               6-332
               

               Cow position:
               chr1:66898435-66898738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               123, 78
               

               Conread position:
               6-348
               

               Cow position:
               chr1:40090019-40089669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               133, 89
               

               Conread position:
               6-425
               

               Cow position:
               chr1:81868666-81869080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               218, 80
               

               Conread position:
               7-231
               

               Cow position:
               chr1:91811839-91811631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               220, 31
               

               Conread position:
               7-241
               

               Cow position:
               chr1:2998010-2997779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               132, 38
               

               Conread position:
               7-276
               

               Cow position:
               chr1:19885443-19885180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               134, 22
               

               Conread position:
               7-293
               

               Cow position:
               chr1:11729237-11728956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               132, 79
               

               Conread position:
               7-293
               

               Cow position:
               chr1:16855637-16855912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               239, 78
               

               Conread position:
               7-296
               

               Cow position:
               chr1:55705187-55705478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               26, 39
               

               Conread position:
               7-311
               

               Cow position:
               chr1:41697117-41696818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               132, 22
               

               Conread position:
               7-316
               

               Cow position:
               chr1:56635160-56634852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               132, 67
               

               Conread position:
               7-317
               

               Cow position:
               chr1:46218635-46218338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 44
               

               Conread position:
               7-318
               

               Cow position:
               chr1:35843864-35844176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               126, 72
               

               Conread position:
               7-318
               

               Cow position:
               chr1:57900662-57900987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               15, 162
               

               Conread position:
               7-318
               

               Cow position:
               chr1:78857267-78857568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               132, 72
               

               Conread position:
               7-325
               

               Cow position:
               chr1:35162472-35162151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 80
               

               Conread position:
               7-326
               

               Cow position:
               chr1:10778625-10778320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 81
               

               Conread position:
               7-326
               

               Cow position:
               chr1:100421887-100421589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               132, 79
               

               Conread position:
               7-327
               

               Cow position:
               chr1:4032694-4032379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 86
               

               Conread position:
               7-328
               

               Cow position:
               chr1:6794863-6795192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               132, 28
               

               Conread position:
               7-331
               

               Cow position:
               chr1:91066090-91066407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 7
               

               Conread position:
               7-334
               

               Cow position:
               chr1:34856566-34856891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 86
               

               Conread position:
               7-335
               

               Cow position:
               chr1:53374495-53374172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 63
               

               Conread position:
               7-338
               

               Cow position:
               chr1:19466115-19465796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 83
               

               Conread position:
               7-356
               

               Cow position:
               chr1:61884975-61884631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               227, 72
               

               Conread position:
               7-415
               

               Cow position:
               chr1:31390526-31390935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 79
               

               Conread position:
               7-415
               

               Cow position:
               chr1:37309457-37309845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 77
               

               Conread position:
               7-415
               

               Cow position:
               chr1:44125576-44125984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               76, 22
               

               Conread position:
               7-425
               

               Cow position:
               chr1:7714029-7713606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               104, 88
               

               Conread position:
               8-174
               

               Cow position:
               chr1:6972587-6972431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               131, 69
               

               Conread position:
               8-229
               

               Cow position:
               chr1:7609681-7609461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               131, 86
               

               Conread position:
               8-252
               

               Cow position:
               chr1:182865-182633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               8-277
               

               Cow position:
               chr1:4414149-4414413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               131, 21
               

               Conread position:
               8-291
               

               Cow position:
               chr1:81228273-81228559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 101
               

               Conread position:
               8-314
               

               Cow position:
               chr1:21934112-21934414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               131, 79
               

               Conread position:
               8-318
               

               Cow position:
               chr1:44769048-44769356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 54
               

               Conread position:
               8-318
               

               Cow position:
               chr1:81319353-81319044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 68
               

               Conread position:
               8-335
               

               Cow position:
               chr1:33996863-33997175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               131, 80
               

               Conread position:
               9-138
               

               Cow position:
               chr1:30504561-30504440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               9-144
               

               Cow position:
               chr1:45223641-45223511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-144
               

               Cow position:
               chr1:73936085-73936220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               131, 76
               

               Conread position:
               9-177
               

               Cow position:
               chr1:42541658-42541495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               130, 74
               

               Conread position:
               9-186
               

               Cow position:
               chr1:81580237-81580066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               87, 14
               

               Conread position:
               9-187
               

               Cow position:
               chr1:61542859-61543029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               130, 21
               

               Conread position:
               9-198
               

               Cow position:
               chr1:43311712-43311898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               9-199
               

               Cow position:
               chr1:47790602-47790787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               128, 85
               

               Conread position:
               9-201
               

               Cow position:
               chr1:8984622-8984810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               43, 81
               

               Conread position:
               9-203
               

               Cow position:
               chr1:6294438-6294625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               51, 96
               

               Conread position:
               9-208
               

               Cow position:
               chr1:64572575-64572381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               130, 83
               

               Conread position:
               9-209
               

               Cow position:
               chr1:85550018-85550211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-210
               

               Cow position:
               chr1:86073656-86073460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               60, 65
               

               Conread position:
               9-215
               

               Cow position:
               chr1:30047542-30047733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               130, 29
               

               Conread position:
               9-215
               

               Cow position:
               chr1:92996831-92997038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-219
               

               Cow position:
               chr1:2975934-2976138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               35, 66
               

               Conread position:
               9-222
               

               Cow position:
               chr1:39224866-39225071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               130, 76
               

               Conread position:
               9-225
               

               Cow position:
               chr1:23512599-23512804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               9-229
               

               Cow position:
               chr1:62519423-62519204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               130, 46
               

               Conread position:
               9-229
               

               Cow position:
               chr1:85647720-85647937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               134, 70
               

               Conread position:
               9-229
               

               Cow position:
               chr1:86682500-86682716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               132, 79
               

               Conread position:
               9-231
               

               Cow position:
               chr1:60281433-60281215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-231
               

               Cow position:
               chr1:70435058-70434848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               9-231
               

               Cow position:
               chr1:98413832-98413611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-232
               

               Cow position:
               chr1:22192829-22192607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               91, 111
               

               Conread position:
               9-232
               

               Cow position:
               chr1:93554896-93554687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               173, 79
               

               Conread position:
               9-235
               

               Cow position:
               chr1:54156675-54156897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               130, 14
               

               Conread position:
               9-239
               

               Cow position:
               chr1:33409565-33409791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               130, 69
               

               Conread position:
               9-240
               

               Cow position:
               chr1:42398131-42398361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 83
               

               Conread position:
               9-240
               

               Cow position:
               chr1:55428896-55429120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               44, 75
               

               Conread position:
               9-240
               

               Cow position:
               chr1:65904938-65905172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               124, 92
               

               Conread position:
               9-240
               

               Cow position:
               chr1:85593835-85593610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 29
               

               Conread position:
               9-241
               

               Cow position:
               chr1:53370143-53369914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               130, 34
               

               Conread position:
               9-242
               

               Cow position:
               chr1:49077271-49077509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               130, 81
               

               Conread position:
               9-245
               

               Cow position:
               chr1:6788223-6788454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               130, 96
               

               Conread position:
               9-245
               

               Cow position:
               chr1:16060944-16061188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               91, 199
               

               Conread position:
               9-245
               

               Cow position:
               chr1:20667682-20667911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-245
               

               Cow position:
               chr1:73196171-73196400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               130, 66
               

               Conread position:
               9-246
               

               Cow position:
               chr1:9470338-9470567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               134, 78
               

               Conread position:
               9-246
               

               Cow position:
               chr1:25387110-25386881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               130, 18
               

               Conread position:
               9-249
               

               Cow position:
               chr1:96081540-96081311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               172, 75
               

               Conread position:
               9-254
               

               Cow position:
               chr1:24445568-24445811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 29
               

               Conread position:
               9-254
               

               Cow position:
               chr1:65318635-65318399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 75
               

               Conread position:
               9-259
               

               Cow position:
               chr1:61742401-61742651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               131, 74
               

               Conread position:
               9-260
               

               Cow position:
               chr1:43703469-43703226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-261
               

               Cow position:
               chr1:71228152-71227887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               110, 17
               

               Conread position:
               9-263
               

               Cow position:
               chr1:58825601-58825357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               233, 28
               

               Conread position:
               9-264
               

               Cow position:
               chr1:51654484-51654218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               9-264
               

               Cow position:
               chr1:70026285-70026534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               33, 75
               

               Conread position:
               9-264
               

               Cow position:
               chr1:84906003-84906260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               87, 103
               

               Conread position:
               9-264
               

               Cow position:
               chr1:90976028-90976275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               130, 77
               

               Conread position:
               9-266
               

               Cow position:
               chr1:724800-724540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               199
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               130, 76
               

               Conread position:
               9-268
               

               Cow position:
               chr1:15333951-15333681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               88, 26
               

               Conread position:
               9-274
               

               Cow position:
               chr1:46030301-46030555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-275
               

               Cow position:
               chr1:86279473-86279211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               172, 57
               

               Conread position:
               9-276
               

               Cow position:
               chr1:68863091-68862831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               152, 26
               

               Conread position:
               9-279
               

               Cow position:
               chr1:12464604-12464871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               130, 68
               

               Conread position:
               9-279
               

               Cow position:
               chr1:71643603-71643871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               179, 83
               

               Conread position:
               9-282
               

               Cow position:
               chr1:40482352-40482622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               172, 59
               

               Conread position:
               9-285
               

               Cow position:
               chr1:75383037-75382777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-287
               

               Cow position:
               chr1:74955961-74956239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-290
               

               Cow position:
               chr1:6304804-6305087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-290
               

               Cow position:
               chr1:78092097-78091818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-291
               

               Cow position:
               chr1:31348377-31348660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 83
               

               Conread position:
               9-291
               

               Cow position:
               chr1:49433204-49433484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-291
               

               Cow position:
               chr1:68845430-68845705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-291
               

               Cow position:
               chr1:98311130-98310841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               130, 90
               

               Conread position:
               9-293
               

               Cow position:
               chr1:26702147-26702429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 20
               

               Conread position:
               9-293
               

               Cow position:
               chr1:34771443-34771725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               209
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               129, 79
               

               Conread position:
               9-293
               

               Cow position:
               chr1:63138901-63138617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-295
               

               Cow position:
               chr1:7971472-7971207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               44, 85
               

               Conread position:
               9-295
               

               Cow position:
               chr1:95654653-95654940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               130, 90
               

               Conread position:
               9-296
               

               Cow position:
               chr1:26201292-26200996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               89, 37
               

               Conread position:
               9-296
               

               Cow position:
               chr1:52052657-52052928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               130, 91
               

               Conread position:
               9-300
               

               Cow position:
               chr1:64804042-64804336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               218
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               172, 96
               

               Conread position:
               9-303
               

               Cow position:
               chr1:78809936-78809652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               219
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               131, 76
               

               Conread position:
               9-304
               

               Cow position:
               chr1:24728780-24729072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               130, 29
               

               Conread position:
               9-305
               

               Cow position:
               chr1:10942034-10942325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               128, 88
               

               Conread position:
               9-305
               

               Cow position:
               chr1:10964352-10964061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               128, 88
               

               Conread position:
               9-305
               

               Cow position:
               chr1:13637603-13637904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               132, 79
               

               Conread position:
               9-305
               

               Cow position:
               chr1:97611600-97611886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               176, 88
               

               Conread position:
               9-307
               

               Cow position:
               chr1:55230036-55229749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               130, 81
               

               Conread position:
               9-307
               

               Cow position:
               chr1:55357235-55357521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-307
               

               Cow position:
               chr1:85596998-85596708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               122, 34
               

               Conread position:
               9-307
               

               Cow position:
               chr1:89341920-89342228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               9-307
               

               Cow position:
               chr1:98551780-98551478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 82
               

               Conread position:
               9-309
               

               Cow position:
               chr1:19482021-19482311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               57, 40
               

               Conread position:
               9-309
               

               Cow position:
               chr1:21508453-21508150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               128, 95
               

               Conread position:
               9-311
               

               Cow position:
               chr1:40531043-40531348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               78, 44
               

               Conread position:
               9-311
               

               Cow position:
               chr1:44507033-44506729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 78
               

               Conread position:
               9-314
               

               Cow position:
               chr1:52995084-52994782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               227
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               130, 82
               

               Conread position:
               9-315
               

               Cow position:
               chr1:3923740-3924037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-315
               

               Cow position:
               chr1:3962627-3962927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 82
               

               Conread position:
               9-315
               

               Cow position:
               chr1:25383728-25383419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               130, 55
               

               Conread position:
               9-315
               

               Cow position:
               chr1:93528757-93528447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 34
               

               Conread position:
               9-316
               

               Cow position:
               chr1:16767028-16767329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               130, 28
               

               Conread position:
               9-316
               

               Cow position:
               chr1:56477652-56477351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 83
               

               Conread position:
               9-316
               

               Cow position:
               chr1:100400132-100400445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               30, 85
               

               Conread position:
               9-317
               

               Cow position:
               chr1:874714-874398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               130, 86
               

               Conread position:
               9-317
               

               Cow position:
               chr1:1981053-1981355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               42, 47
               

               Conread position:
               9-317
               

               Cow position:
               chr1:57395876-57396174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               130, 78
               

               Conread position:
               9-318
               

               Cow position:
               chr1:635254-634945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               130, 81
               

               Conread position:
               9-318
               

               Cow position:
               chr1:5023702-5023986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               288, 88
               

               Conread position:
               9-318
               

               Cow position:
               chr1:7350608-7350292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               126, 84
               

               Conread position:
               9-318
               

               Cow position:
               chr1:10633106-10632807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               133, 70
               

               Conread position:
               9-318
               

               Cow position:
               chr1:11226186-11226491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               161, 84
               

               Conread position:
               9-318
               

               Cow position:
               chr1:11913818-11914123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               226
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               36, 85
               

               Conread position:
               9-318
               

               Cow position:
               chr1:22730794-22730515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               228, 79
               

               Conread position:
               9-318
               

               Cow position:
               chr1:24133003-24133301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               130, 20
               

               Conread position:
               9-318
               

               Cow position:
               chr1:38277968-38278291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               78, 92
               

               Conread position:
               9-318
               

               Cow position:
               chr1:42873890-42874193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               32, 48
               

               Conread position:
               9-318
               

               Cow position:
               chr1:45019741-45020049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               132, 92
               

               Conread position:
               9-318
               

               Cow position:
               chr1:45288811-45289119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 84
               

               Conread position:
               9-318
               

               Cow position:
               chr1:47233418-47233721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-318
               

               Cow position:
               chr1:51531811-51531527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-318
               

               Cow position:
               chr1:54206756-54207062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               130, 21
               

               Conread position:
               9-318
               

               Cow position:
               chr1:54258627-54258321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 84
               

               Conread position:
               9-318
               

               Cow position:
               chr1:55135896-55135590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               29, 84
               

               Conread position:
               9-318
               

               Cow position:
               chr1:63434746-63435049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-318
               

               Cow position:
               chr1:63504393-63504093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               130, 5
               

               Conread position:
               9-318
               

               Cow position:
               chr1:66355654-66355954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               98, 29
               

               Conread position:
               9-318
               

               Cow position:
               chr1:68618871-68619183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               231
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               9-318
               

               Cow position:
               chr1:68855225-68854929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               87, 98
               

               Conread position:
               9-318
               

               Cow position:
               chr1:69264868-69264576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               180, 42
               

               Conread position:
               9-318
               

               Cow position:
               chr1:70380083-70380392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               130, 40
               

               Conread position:
               9-318
               

               Cow position:
               chr1:70538671-70538357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               130, 72
               

               Conread position:
               9-318
               

               Cow position:
               chr1:71253496-71253801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               130, 20
               

               Conread position:
               9-318
               

               Cow position:
               chr1:72034864-72035175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 63
               

               Conread position:
               9-318
               

               Cow position:
               chr1:72068775-72069073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               122, 76
               

               Conread position:
               9-318
               

               Cow position:
               chr1:73584350-73584648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               124, 14
               

               Conread position:
               9-318
               

               Cow position:
               chr1:79165023-79165338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               9-318
               

               Cow position:
               chr1:80900180-80899862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-318
               

               Cow position:
               chr1:84811879-84812183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               215, 84
               

               Conread position:
               9-318
               

               Cow position:
               chr1:89350025-89349731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               130, 68
               

               Conread position:
               9-318
               

               Cow position:
               chr1:95215130-95215432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               138, 75
               

               Conread position:
               9-318
               

               Cow position:
               chr1:98594625-98594325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               130, 40
               

               Conread position:
               9-318
               

               Cow position:
               chr1:100800413-100800111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 71
               

               Conread position:
               9-318
               

               Cow position:
               chr1:102266208-102266515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               178, 78
               

               Conread position:
               9-325
               

               Cow position:
               chr1:50930919-50931222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               128, 20
               

               Conread position:
               9-325
               

               Cow position:
               chr1:82880704-82880412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               125, 20
               

               Conread position:
               9-326
               

               Cow position:
               chr1:1956274-1956583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               226, 12
               

               Conread position:
               9-326
               

               Cow position:
               chr1:1991358-1991682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               235
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               24, 47
               

               Conread position:
               9-326
               

               Cow position:
               chr1:56711543-56711872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               9-326
               

               Cow position:
               chr1:61564853-61564537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               130, 39
               

               Conread position:
               9-326
               

               Cow position:
               chr1:61723959-61724279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               236
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               16, 7
               

               Conread position:
               9-327
               

               Cow position:
               chr1:54199319-54199635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-328
               

               Cow position:
               chr1:56225529-56225221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-329
               

               Cow position:
               chr1:1165659-1165343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               130, 74
               

               Conread position:
               9-330
               

               Cow position:
               chr1:20000688-20001007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 74
               

               Conread position:
               9-330
               

               Cow position:
               chr1:24235459-24235776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               131, 76
               

               Conread position:
               9-330
               

               Cow position:
               chr1:32341149-32341465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-330
               

               Cow position:
               chr1:57639455-57639778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               241
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               121, 77
               

               Conread position:
               9-330
               

               Cow position:
               chr1:64678755-64678439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               225, 72
               

               Conread position:
               9-332
               

               Cow position:
               chr1:4027924-4027601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               161, 42
               

               Conread position:
               9-332
               

               Cow position:
               chr1:7740007-7739711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               9-332
               

               Cow position:
               chr1:26895751-26896085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               79, 172
               

               Conread position:
               9-332
               

               Cow position:
               chr1:36998245-36997937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               172, 63
               

               Conread position:
               9-332
               

               Cow position:
               chr1:41056738-41056424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               213, 70
               

               Conread position:
               9-332
               

               Cow position:
               chr1:52435332-52435010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               171, 69
               

               Conread position:
               9-332
               

               Cow position:
               chr1:60032539-60032858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-332
               

               Cow position:
               chr1:60907437-60907101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-332
               

               Cow position:
               chr1:72286008-72286309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-332
               

               Cow position:
               chr1:81613449-81613125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               232
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               130, 84
               

               Conread position:
               9-332
               

               Cow position:
               chr1:85774517-85774199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               9-332
               

               Cow position:
               chr1:90864233-90864560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-332
               

               Cow position:
               chr1:92436930-92437251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               130, 16
               

               Conread position:
               9-333
               

               Cow position:
               chr1:100324689-100324987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               130, 51
               

               Conread position:
               9-334
               

               Cow position:
               chr1:26943368-26943046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               122, 76
               

               Conread position:
               9-335
               

               Cow position:
               chr1:60707463-60707140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               69, 29
               

               Conread position:
               9-336
               

               Cow position:
               chr1:45007526-45007203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               44, 84
               

               Conread position:
               9-338
               

               Cow position:
               chr1:93110557-93110891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               9-340
               

               Cow position:
               chr1:49317436-49317758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-342
               

               Cow position:
               chr1:75744922-75744590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               233
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-342
               

               Cow position:
               chr1:79278387-79278710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               9-343
               

               Cow position:
               chr1:83748002-83747672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               130, 16
               

               Conread position:
               9-344
               

               Cow position:
               chr1:6941528-6941194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 91
               

               Conread position:
               9-345
               

               Cow position:
               chr1:72141635-72141291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               78, 49
               

               Conread position:
               9-346
               

               Cow position:
               chr1:6166300-6165977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               246
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               130, 28
               

               Conread position:
               9-348
               

               Cow position:
               chr1:70533878-70534210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               160, 17
               

               Conread position:
               9-350
               

               Cow position:
               chr1:82337720-82338063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 26
               

               Conread position:
               9-352
               

               Cow position:
               chr1:6958941-6958599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 91
               

               Conread position:
               9-360
               

               Cow position:
               chr1:74084131-74084477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 27
               

               Conread position:
               9-365
               

               Cow position:
               chr1:93810489-93810150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 79
               

               Conread position:
               9-368
               

               Cow position:
               chr1:34686240-34685899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 31
               

               Conread position:
               9-368
               

               Cow position:
               chr1:65103680-65103339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               255
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               35, 23
               

               Conread position:
               9-411
               

               Cow position:
               chr1:21787396-21786992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 88
               

               Conread position:
               9-413
               

               Cow position:
               chr1:42360346-42359924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               294
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               90, 134
               

               Conread position:
               9-414
               

               Cow position:
               chr1:3323928-3323520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               286
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               172, 84
               

               Conread position:
               9-414
               

               Cow position:
               chr1:92963455-92963056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               273
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               130, 58
               

               Conread position:
               9-414
               

               Cow position:
               chr1:96964376-96963985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               280
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               132, 28
               

               Conread position:
               9-414
               

               Cow position:
               chr1:100741338-100740953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 28
               

               Conread position:
               9-415
               

               Cow position:
               chr1:21460932-21460535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               122, 17
               

               Conread position:
               9-415
               

               Cow position:
               chr1:31413912-31414300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 75
               

               Conread position:
               9-415
               

               Cow position:
               chr1:31934567-31934172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               130, 79
               

               Conread position:
               9-415
               

               Cow position:
               chr1:34300491-34300883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               275
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-415
               

               Cow position:
               chr1:42555326-42554915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 75
               

               Conread position:
               9-415
               

               Cow position:
               chr1:48105371-48105771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               130, 51
               

               Conread position:
               9-415
               

               Cow position:
               chr1:61721321-61721701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               278
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               151, 78
               

               Conread position:
               9-415
               

               Cow position:
               chr1:68253654-68253256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               277
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               32, 88
               

               Conread position:
               9-415
               

               Cow position:
               chr1:68817739-68818144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               280
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               32, 20
               

               Conread position:
               9-415
               

               Cow position:
               chr1:76019636-76020015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 20
               

               Conread position:
               9-415
               

               Cow position:
               chr1:80336189-80336585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               127, 90
               

               Conread position:
               9-415
               

               Cow position:
               chr1:81913094-81913484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               284
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               222, 19
               

               Conread position:
               9-415
               

               Cow position:
               chr1:86113340-86113748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               285
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               130, 63
               

               Conread position:
               9-415
               

               Cow position:
               chr1:90868381-90868773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 74
               

               Conread position:
               9-415
               

               Cow position:
               chr1:91816711-91817106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               9-415
               

               Cow position:
               chr1:94226495-94226883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 41
               

               Conread position:
               9-416
               

               Cow position:
               chr1:73960763-73960364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               274
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               130, 70
               

               Conread position:
               10-237
               

               Cow position:
               chr1:42545720-42545945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               96, 77
               

               Conread position:
               10-240
               

               Cow position:
               chr1:50345605-50345382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               129, 65
               

               Conread position:
               10-252
               

               Cow position:
               chr1:57420672-57420902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               129, 74
               

               Conread position:
               10-256
               

               Cow position:
               chr1:43822458-43822225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               129, 16
               

               Conread position:
               10-283
               

               Cow position:
               chr1:26178752-26179026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               171, 82
               

               Conread position:
               10-291
               

               Cow position:
               chr1:77720189-77720451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               129, 33
               

               Conread position:
               10-309
               

               Cow position:
               chr1:10655540-10655240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               129, 11
               

               Conread position:
               10-309
               

               Cow position:
               chr1:36875085-36874778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               90, 25
               

               Conread position:
               10-318
               

               Cow position:
               chr1:61176237-61175937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               129, 62
               

               Conread position:
               10-318
               

               Cow position:
               chr1:72011754-72012049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               129, 80
               

               Conread position:
               10-318
               

               Cow position:
               chr1:89485639-89485345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               32, 82
               

               Conread position:
               10-332
               

               Cow position:
               chr1:51981281-51980967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               129, 83
               

               Conread position:
               10-332
               

               Cow position:
               chr1:71691880-71691554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               73, 54
               

               Conread position:
               10-332
               

               Cow position:
               chr1:79844524-79844209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               129, 66
               

               Conread position:
               10-337
               

               Cow position:
               chr1:96712747-96713079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               56, 33
               

               Conread position:
               10-349
               

               Cow position:
               chr1:31871484-31871143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               129, 25
               

               Conread position:
               10-358
               

               Cow position:
               chr1:77880675-77881001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               95, 25
               

               Conread position:
               10-415
               

               Cow position:
               chr1:4374278-4374673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 83
               

               Conread position:
               10-415
               

               Cow position:
               chr1:97755579-97755183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               105, 67
               

               Conread position:
               11-186
               

               Cow position:
               chr1:26427803-26427972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               128, 76
               

               Conread position:
               11-200
               

               Cow position:
               chr1:72813674-72813488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               127, 61
               

               Conread position:
               11-210
               

               Cow position:
               chr1:47886422-47886623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               51, 35
               

               Conread position:
               11-213
               

               Cow position:
               chr1:85141677-85141869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               128, 19
               

               Conread position:
               11-221
               

               Cow position:
               chr1:93228583-93228383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               128, 74
               

               Conread position:
               11-225
               

               Cow position:
               chr1:22525936-22525730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 73
               

               Conread position:
               11-231
               

               Cow position:
               chr1:87095156-87095386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               11-240
               

               Cow position:
               chr1:38753981-38753753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               128, 77
               

               Conread position:
               11-252
               

               Cow position:
               chr1:24876320-24876089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               170, 27
               

               Conread position:
               11-264
               

               Cow position:
               chr1:94261594-94261355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               178, 59
               

               Conread position:
               11-273
               

               Cow position:
               chr1:43340559-43340824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               128, 24
               

               Conread position:
               11-289
               

               Cow position:
               chr1:81301033-81301313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               125, 64
               

               Conread position:
               11-290
               

               Cow position:
               chr1:69415651-69415936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               128, 68
               

               Conread position:
               11-290
               

               Cow position:
               chr1:91800542-91800824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               217, 10
               

               Conread position:
               11-292
               

               Cow position:
               chr1:15691393-15691117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               128, 66
               

               Conread position:
               11-293
               

               Cow position:
               chr1:73761295-73761573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               11-293
               

               Cow position:
               chr1:98030981-98030693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               97, 81
               

               Conread position:
               11-304
               

               Cow position:
               chr1:3429451-3429741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               76, 102
               

               Conread position:
               11-308
               

               Cow position:
               chr1:4539364-4539675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               66, 157
               

               Conread position:
               11-310
               

               Cow position:
               chr1:76096497-76096201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               128, 68
               

               Conread position:
               11-316
               

               Cow position:
               chr1:52414900-52415203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               125, 39
               

               Conread position:
               11-318
               

               Cow position:
               chr1:25793381-25793686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               128, 26
               

               Conread position:
               11-318
               

               Cow position:
               chr1:26688413-26688724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               11-318
               

               Cow position:
               chr1:43352598-43352895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               126, 32
               

               Conread position:
               11-318
               

               Cow position:
               chr1:51968520-51968224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               102, 47
               

               Conread position:
               11-318
               

               Cow position:
               chr1:53520969-53520660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               128, 82
               

               Conread position:
               11-318
               

               Cow position:
               chr1:71136211-71135907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               128, 80
               

               Conread position:
               11-318
               

               Cow position:
               chr1:80764477-80764781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               128, 68
               

               Conread position:
               11-318
               

               Cow position:
               chr1:99642311-99642616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               128, 44
               

               Conread position:
               11-325
               

               Cow position:
               chr1:1916169-1916489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               130, 68
               

               Conread position:
               11-325
               

               Cow position:
               chr1:101551521-101551204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               82, 19
               

               Conread position:
               11-328
               

               Cow position:
               chr1:90423024-90423342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               221
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               128, 27
               

               Conread position:
               11-330
               

               Cow position:
               chr1:54478387-54478064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 45
               

               Conread position:
               11-331
               

               Cow position:
               chr1:15547528-15547210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               233
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               135, 14
               

               Conread position:
               11-332
               

               Cow position:
               chr1:44155308-44155002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               30, 69
               

               Conread position:
               11-338
               

               Cow position:
               chr1:57247493-57247170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               152, 45
               

               Conread position:
               11-347
               

               Cow position:
               chr1:27145593-27145927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               106, 73
               

               Conread position:
               11-368
               

               Cow position:
               chr1:22777485-22777847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               240
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               128, 74
               

               Conread position:
               11-369
               

               Cow position:
               chr1:99609426-99609069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               128, 14
               

               Conread position:
               11-412
               

               Cow position:
               chr1:80973549-80973955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               279
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               128, 23
               

               Conread position:
               11-412
               

               Cow position:
               chr1:102647215-102647601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 79
               

               Conread position:
               11-415
               

               Cow position:
               chr1:20099424-20099026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               280
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               185, 14
               

               Conread position:
               11-415
               

               Cow position:
               chr1:39068898-39069293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 77
               

               Conread position:
               11-415
               

               Cow position:
               chr1:63595996-63596394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               88, 65
               

               Conread position:
               11-415
               

               Cow position:
               chr1:69539749-69539362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 77
               

               Conread position:
               11-415
               

               Cow position:
               chr1:82884335-82884720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               279
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               128, 68
               

               Conread position:
               12-235
               

               Cow position:
               chr1:98372689-98372473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               164, 72
               

               Conread position:
               12-256
               

               Cow position:
               chr1:90413436-90413200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               34, 25
               

               Conread position:
               13-296
               

               Cow position:
               chr1:87072752-87072480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               222, 37
               

               Conread position:
               14-245
               

               Cow position:
               chr1:101632282-101632508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               125, 74
               

               Conread position:
               14-264
               

               Cow position:
               chr1:24542515-24542774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               14-264
               

               Cow position:
               chr1:40192644-40192870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               14-264
               

               Cow position:
               chr1:43872264-43872527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               196
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               14-264
               

               Cow position:
               chr1:82443400-82443649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               127, 12
               

               Conread position:
               14-288
               

               Cow position:
               chr1:98461341-98461074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               218, 74
               

               Conread position:
               14-293
               

               Cow position:
               chr1:89381330-89381057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               125, 66
               

               Conread position:
               14-311
               

               Cow position:
               chr1:100770697-100770975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               26, 80
               

               Conread position:
               14-315
               

               Cow position:
               chr1:53425232-53424944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 80
               

               Conread position:
               14-332
               

               Cow position:
               chr1:29626857-29627175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               125, 74
               

               Conread position:
               14-332
               

               Cow position:
               chr1:85029008-85028701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               197, 71
               

               Conread position:
               14-332
               

               Cow position:
               chr1:99136375-99136690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               14-415
               

               Cow position:
               chr1:77620601-77620211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               125, 72
               

               Conread position:
               15-235
               

               Cow position:
               chr1:77683406-77683198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               124, 73
               

               Conread position:
               15-317
               

               Cow position:
               chr1:10063922-10064223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               147, 75
               

               Conread position:
               15-317
               

               Cow position:
               chr1:90641087-90640780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               15-331
               

               Cow position:
               chr1:76470707-76470400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 28
               

               Conread position:
               16-240
               

               Cow position:
               chr1:9534218-9534011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               123, 58
               

               Conread position:
               16-240
               

               Cow position:
               chr1:70028633-70028418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               123, 67
               

               Conread position:
               16-254
               

               Cow position:
               chr1:57783057-57782831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 21
               

               Conread position:
               16-316
               

               Cow position:
               chr1:78791251-78791551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               123, 59
               

               Conread position:
               16-318
               

               Cow position:
               chr1:8349265-8349557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 72
               

               Conread position:
               16-318
               

               Cow position:
               chr1:71045808-71045509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 76
               

               Conread position:
               16-326
               

               Cow position:
               chr1:82378845-82378540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               39, 64
               

               Conread position:
               16-328
               

               Cow position:
               chr1:41735566-41735881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               56, 63
               

               Conread position:
               16-334
               

               Cow position:
               chr1:21835984-21835686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 19
               

               Conread position:
               16-342
               

               Cow position:
               chr1:59650323-59649996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               120, 94
               

               Conread position:
               16-346
               

               Cow position:
               chr1:45535760-45535428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 77
               

               Conread position:
               16-360
               

               Cow position:
               chr1:74947064-74947405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 87
               

               Conread position:
               16-364
               

               Cow position:
               chr1:23099956-23099605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               245
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               123, 72
               

               Conread position:
               16-368
               

               Cow position:
               chr1:95765039-95765385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               123, 27
               

               Conread position:
               19-240
               

               Cow position:
               chr1:75347675-75347456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               120, 60
               

               Conread position:
               19-240
               

               Cow position:
               chr1:80631749-80631534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               23, 70
               

               Conread position:
               19-310
               

               Cow position:
               chr1:64189551-64189264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               120, 74
               

               Conread position:
               19-316
               

               Cow position:
               chr1:8869609-8869907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               120, 61
               

               Conread position:
               19-318
               

               Cow position:
               chr1:7142800-7143095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               120, 18
               

               Conread position:
               19-341
               

               Cow position:
               chr1:2765464-2765148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               142, 60
               

               Conread position:
               19-412
               

               Cow position:
               chr1:18223818-18224214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               120, 98
               

               Conread position:
               19-415
               

               Cow position:
               chr1:99807666-99808063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               274
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               20-170
               

               Cow position:
               chr1:71796261-71796408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               20-188
               

               Cow position:
               chr1:45285712-45285546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               119, 74
               

               Conread position:
               20-264
               

               Cow position:
               chr1:89443429-89443669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               123, 59
               

               Conread position:
               20-317
               

               Cow position:
               chr1:34159884-34159587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 67
               

               Conread position:
               20-318
               

               Cow position:
               chr1:66430340-66430055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               164, 23
               

               Conread position:
               20-332
               

               Cow position:
               chr1:52329469-52329788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               67, 104
               

               Conread position:
               20-344
               

               Cow position:
               chr1:49131062-49131394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               21, 43
               

               Conread position:
               20-415
               

               Cow position:
               chr1:89741951-89742347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               278
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               121, 67
               

               Conread position:
               21-231
               

               Cow position:
               chr1:92369786-92369577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               18, 74
               

               Conread position:
               21-293
               

               Cow position:
               chr1:98360349-98360630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               118, 5
               

               Conread position:
               21-316
               

               Cow position:
               chr1:68217313-68217604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               118, 71
               

               Conread position:
               21-318
               

               Cow position:
               chr1:81563793-81563487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               55, 95
               

               Conread position:
               21-318
               

               Cow position:
               chr1:84255815-84255508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               86, 58
               

               Conread position:
               21-318
               

               Cow position:
               chr1:96478748-96478449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               53, 70
               

               Conread position:
               21-318
               

               Cow position:
               chr1:101634760-101634455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               89, 46
               

               Conread position:
               21-333
               

               Cow position:
               chr1:8663-8361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               161, 64
               

               Conread position:
               21-352
               

               Cow position:
               chr1:32244351-32244679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               118, 16
               

               Conread position:
               21-415
               

               Cow position:
               chr1:22827205-22826832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               261
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               210, 63
               

               Conread position:
               22-219
               

               Cow position:
               chr1:83410492-83410300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               117, 55
               

               Conread position:
               22-240
               

               Cow position:
               chr1:20544344-20544131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               31, 16
               

               Conread position:
               22-271
               

               Cow position:
               chr1:83072488-83072244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               210, 55
               

               Conread position:
               22-326
               

               Cow position:
               chr1:45555413-45555108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 64
               

               Conread position:
               22-328
               

               Cow position:
               chr1:48444147-48444438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 57
               

               Conread position:
               22-331
               

               Cow position:
               chr1:88652684-88652372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               22-415
               

               Cow position:
               chr1:82406502-82406891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               117, 81
               

               Conread position:
               23-195
               

               Cow position:
               chr1:15169287-15169451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               116, 71
               

               Conread position:
               23-245
               

               Cow position:
               chr1:25734914-25734689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               116, 80
               

               Conread position:
               24-292
               

               Cow position:
               chr1:43447784-43448043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               201
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               115, 19
               

               Conread position:
               24-332
               

               Cow position:
               chr1:52039683-52039377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               71, 78
               

               Conread position:
               26-235
               

               Cow position:
               chr1:97696790-97696581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               111, 62
               

               Conread position:
               26-256
               

               Cow position:
               chr1:68763642-68763866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               113, 7
               

               Conread position:
               26-264
               

               Cow position:
               chr1:28563523-28563761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               155, 81
               

               Conread position:
               26-309
               

               Cow position:
               chr1:4291210-4290919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 72
               

               Conread position:
               26-318
               

               Cow position:
               chr1:20205073-20204780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               113, 65
               

               Conread position:
               26-318
               

               Cow position:
               chr1:24534211-24534489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               113, 58
               

               Conread position:
               26-318
               

               Cow position:
               chr1:68276459-68276161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               111, 64
               

               Conread position:
               26-332
               

               Cow position:
               chr1:37321955-37322266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               117, 53
               

               Conread position:
               26-333
               

               Cow position:
               chr1:80988394-80988085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               113, 66
               

               Conread position:
               26-335
               

               Cow position:
               chr1:81290550-81290255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               26-364
               

               Cow position:
               chr1:57635505-57635175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 66
               

               Conread position:
               26-415
               

               Cow position:
               chr1:53458741-53458371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               38, 23
               

               Conread position:
               27-318
               

               Cow position:
               chr1:74822489-74822205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               206, 60
               

               Conread position:
               27-326
               

               Cow position:
               chr1:44165128-44164825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               112, 65
               

               Conread position:
               27-332
               

               Cow position:
               chr1:61741925-61742228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               205, 64
               

               Conread position:
               27-415
               

               Cow position:
               chr1:55163961-55163590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               112, 64
               

               Conread position:
               28-318
               

               Cow position:
               chr1:13547945-13548236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               111, 5
               

               Conread position:
               28-330
               

               Cow position:
               chr1:68826863-68827163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 69
               

               Conread position:
               29-176
               

               Cow position:
               chr1:55819098-55818961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               29-209
               

               Cow position:
               chr1:53369252-53369072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               38, 6
               

               Conread position:
               29-264
               

               Cow position:
               chr1:32001274-32001513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               89, 6
               

               Conread position:
               29-318
               

               Cow position:
               chr1:37706930-37707215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               171, 63
               

               Conread position:
               29-326
               

               Cow position:
               chr1:49796039-49795746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               188, 59
               

               Conread position:
               29-327
               

               Cow position:
               chr1:52206720-52206437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               111, 50
               

               Conread position:
               29-331
               

               Cow position:
               chr1:101822466-101822755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               110, 38
               

               Conread position:
               29-332
               

               Cow position:
               chr1:53495508-53495202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               110, 57
               

               Conread position:
               29-335
               

               Cow position:
               chr1:97820727-97820422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               201, 58
               

               Conread position:
               29-411
               

               Cow position:
               chr1:12870969-12871352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 63
               

               Conread position:
               29-415
               

               Cow position:
               chr1:64251005-64251400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               30-196
               

               Cow position:
               chr1:22394842-22394674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               30-229
               

               Cow position:
               chr1:41115676-41115868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               34, 59
               

               Conread position:
               30-240
               

               Cow position:
               chr1:95558076-95557872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               109, 58
               

               Conread position:
               30-245
               

               Cow position:
               chr1:59518961-59518751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               109, 63
               

               Conread position:
               30-248
               

               Cow position:
               chr1:96472478-96472279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               109, 47
               

               Conread position:
               30-254
               

               Cow position:
               chr1:24777950-24778161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               109, 55
               

               Conread position:
               30-293
               

               Cow position:
               chr1:52956297-52956038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 64
               

               Conread position:
               30-296
               

               Cow position:
               chr1:43389009-43389272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               109, 51
               

               Conread position:
               30-307
               

               Cow position:
               chr1:31234892-31235169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               109, 60
               

               Conread position:
               30-309
               

               Cow position:
               chr1:73561608-73561887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               151, 63
               

               Conread position:
               30-318
               

               Cow position:
               chr1:11853646-11853936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               109, 42
               

               Conread position:
               30-318
               

               Cow position:
               chr1:13414070-13413781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               109, 44
               

               Conread position:
               30-318
               

               Cow position:
               chr1:43839568-43839281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               111, 49
               

               Conread position:
               30-318
               

               Cow position:
               chr1:102349707-102350004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               60, 73
               

               Conread position:
               30-326
               

               Cow position:
               chr1:77462402-77462110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               109, 36
               

               Conread position:
               30-332
               

               Cow position:
               chr1:22448542-22448844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 70
               

               Conread position:
               30-332
               

               Cow position:
               chr1:43379985-43380289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 58
               

               Conread position:
               30-353
               

               Cow position:
               chr1:88618635-88618311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               154, 61
               

               Conread position:
               30-413
               

               Cow position:
               chr1:100552009-100551629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               109, 58
               

               Conread position:
               31-316
               

               Cow position:
               chr1:4573558-4573277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               108, 52
               

               Conread position:
               31-321
               

               Cow position:
               chr1:3244889-3244601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               31-333
               

               Cow position:
               chr1:66138359-66138056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               108, 48
               

               Conread position:
               31-356
               

               Cow position:
               chr1:52774490-52774805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               65, 48
               

               Conread position:
               32-348
               

               Cow position:
               chr1:38544427-38544722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               107, 56
               

               Conread position:
               33-329
               

               Cow position:
               chr1:47009069-47008770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               106, 58
               

               Conread position:
               34-362
               

               Cow position:
               chr1:57263957-57264276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 51
               

               Conread position:
               34-414
               

               Cow position:
               chr1:3137961-3137592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 49
               

               Conread position:
               35-187
               

               Cow position:
               chr1:71716544-71716399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               104, 9
               

               Conread position:
               35-293
               

               Cow position:
               chr1:71953110-71952866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               207, 43
               

               Conread position:
               35-309
               

               Cow position:
               chr1:20002194-20002473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               72, 188
               

               Conread position:
               35-318
               

               Cow position:
               chr1:30034567-30034300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               155, 63
               

               Conread position:
               35-415
               

               Cow position:
               chr1:5162010-5162399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               262
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               105, 68
               

               Conread position:
               35-415
               

               Cow position:
               chr1:68445775-68446133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               153, 53
               
37-318UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr1:82505008-82504721 (view  custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               100, 61
               
38-240UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr1:3243967-3243774 (view  custom track)

               
               
               
Alignm length: 205

               
               
               
Alignm identity: 156

               
               
               
Alignm E-value: 8e-32

               
               
               
Alignm gaps (pig, cow): 101, 57
38-254UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr1:51684838-51684628 (view  custom track)

               
               
               
Alignm length: 219

               
               
               
Alignm identity: 169

               
               
               
Alignm E-value: 6e-40

               
               
               
Alignm gaps (pig, cow): 101, 68

               
               
               Conread position:38-264
               
               
               Cow position:chr1:81471164-81470936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:38-293
               
               
               Cow position:chr1:40600074-40599827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:38-309
               
               
               Cow position:chr1:100512640-100512359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):72, 271

               
               
               Conread position:38-318
               
               
               Cow position:chr1:88971086-88970817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):156, 49

               
               
               Conread position:38-415
               
               
               Cow position:chr1:76222657-76223026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 53

               
               
               Conread position:39-317
               
               
               Cow position:chr1:84239079-84239352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:39-318
               
               
               Cow position:chr1:3751908-3752189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:39-368
               
               
               Cow position:chr1:102825789-102826108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:39-415
               
               
               Cow position:chr1:22745655-22745292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:40-245
               
               
               Cow position:chr1:64421360-64421166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):151, 53

               
               
               Conread position:40-287
               
               
               Cow position:chr1:68996209-68995956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:40-332
               
               
               Cow position:chr1:82861810-82861513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:40-356
               
               
               Cow position:chr1:11770263-11770576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:40-435
               
               
               Cow position:chr1:61391755-61392148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:41-314
               
               
               Cow position:chr1:5409588-5409856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:43-166
               
               
               Cow position:chr1:32788157-32788273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:44-294
               
               
               Cow position:chr1:22255395-22255160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:44-318
               
               
               Cow position:chr1:63240986-63240701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 254

               
               
               Conread position:44-352
               
               
               Cow position:chr1:56643559-56643868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:45-317
               
               
               Cow position:chr1:78783572-78783301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):139, 48

               
               
               Conread position:45-318
               
               
               Cow position:chr1:24655989-24655714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:45-346
               
               
               Cow position:chr1:56748625-56748316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:46-296
               
               
               Cow position:chr1:4294083-4293838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:46-332
               
               
               Cow position:chr1:666389-666100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:46-332
               
               
               Cow position:chr1:84240915-84240640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:46-335
               
               
               Cow position:chr1:46886117-46885831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:47-254
               
               
               Cow position:chr1:81638427-81638224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:47-289
               
               
               Cow position:chr1:41954219-41954470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:47-318
               
               
               Cow position:chr1:50679257-50679532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:47-325
               
               
               Cow position:chr1:3776597-3776867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:47-332
               
               
               Cow position:chr1:33811952-33811674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:47-332
               
               
               Cow position:chr1:61725092-61725373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-415
               
               
               Cow position:chr1:78794714-78795088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:49-231
               
               
               Cow position:chr1:85826367-85826191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):98, 40

               
               
               Conread position:51-334
               
               
               Cow position:chr1:56408637-56408351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:51-342
               
               
               Cow position:chr1:97619811-97620110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:51-412
               
               
               Cow position:chr1:16972822-16973183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:52-264
               
               
               Cow position:chr1:56674109-56674322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:52-292
               
               
               Cow position:chr1:98557767-98558004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:52-307
               
               
               Cow position:chr1:64962650-64962890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:52-311
               
               
               Cow position:chr1:94404231-94403977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:52-333
               
               
               Cow position:chr1:1802158-1801883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):137, 54

               
               
               Conread position:55-226
               
               
               Cow position:chr1:70312791-70312955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:55-296
               
               
               Cow position:chr1:53540405-53540166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-303
               
               
               Cow position:chr1:78184711-78184472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:55-311
               
               
               Cow position:chr1:95057068-95056816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:55-318
               
               
               Cow position:chr1:11873347-11873601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:55-332
               
               
               Cow position:chr1:82370758-82370491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:55-346
               
               
               Cow position:chr1:71818447-71818737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-415
               
               
               Cow position:chr1:3340952-3340595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 42

               
               
               Conread position:56-296
               
               
               Cow position:chr1:95050074-95050324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:56-307
               
               
               Cow position:chr1:51818955-51818706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:56-318
               
               
               Cow position:chr1:99095377-99095117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:56-416
               
               
               Cow position:chr1:44836210-44836568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:57-277
               
               
               Cow position:chr1:32013966-32013751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:57-290
               
               
               Cow position:chr1:14981097-14981337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:57-318
               
               
               Cow position:chr1:56658045-56657795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:57-332
               
               
               Cow position:chr1:71946358-71946630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:57-415
               
               
               Cow position:chr1:12595889-12596239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:58-318
               
               
               Cow position:chr1:22467948-22467684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:59-318
               
               
               Cow position:chr1:91142138-91142400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):80, 65

               
               
               Conread position:62-240
               
               
               Cow position:chr1:75933282-75933108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:62-273
               
               
               Cow position:chr1:89437931-89438137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:62-332
               
               
               Cow position:chr1:29900958-29901217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:63-316
               
               
               Cow position:chr1:101547017-101547286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 243

               
               
               Conread position:63-318
               
               
               Cow position:chr1:41004354-41004613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:63-349
               
               
               Cow position:chr1:3661058-3661333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):177, 25

               
               
               Conread position:63-414
               
               
               Cow position:chr1:5872961-5873307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:64-338
               
               
               Cow position:chr1:13456148-13455877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):165, 15

               
               
               Conread position:66-330
               
               
               Cow position:chr1:98396957-98397222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:67-290
               
               
               Cow position:chr1:45673717-45673493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:74-316
               
               
               Cow position:chr1:98577498-98577231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:74-318
               
               
               Cow position:chr1:58419939-58419686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:74-318
               
               
               Cow position:chr1:99637777-99638026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:80-317
               
               
               Cow position:chr1:39248801-39249040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:80-318
               
               
               Cow position:chr1:81277204-81277447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:80-415
               
               
               Cow position:chr1:75443423-75443760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:82-314
               
               
               Cow position:chr1:49839498-49839264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:82-415
               
               
               Cow position:chr1:8532218-8532549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:83-415
               
               
               Cow position:chr1:3456860-3456537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):145, 23

               
               
               Conread position:84-205
               
               
               Cow position:chr1:90595561-90595684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:84-231
               
               
               Cow position:chr1:3167084-3167224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:84-317
               
               
               Cow position:chr1:6077890-6077649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:84-318
               
               
               Cow position:chr1:29671532-29671770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-329
               
               
               Cow position:chr1:29935395-29935638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):144, 30

               
               
               Conread position:85-264
               
               
               Cow position:chr1:102113115-102113301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:85-308
               
               
               Cow position:chr1:102784946-102784724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):148, 11

               
               
               Conread position:85-318
               
               
               Cow position:chr1:11021019-11020789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:85-318
               
               
               Cow position:chr1:14379544-14379776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:85-332
               
               
               Cow position:chr1:79591099-79590840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:85-334
               
               
               Cow position:chr1:69678334-69678590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:85-415
               
               
               Cow position:chr1:95499503-95499830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:86-316
               
               
               Cow position:chr1:3035001-3035237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:87-210
               
               
               Cow position:chr1:13577401-13577524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:87-245
               
               
               Cow position:chr1:101280730-101280885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:87-296
               
               
               Cow position:chr1:22910361-22910149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:87-314
               
               
               Cow position:chr1:28412351-28412567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:87-318
               
               
               Cow position:chr1:23969049-23969283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:87-332
               
               
               Cow position:chr1:57698459-57698716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:87-335
               
               
               Cow position:chr1:33720108-33719851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:87-415
               
               
               Cow position:chr1:96184030-96184343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:87-434
               
               
               Cow position:chr1:98563152-98562806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:88-296
               
               
               Cow position:chr1:5062015-5061797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:88-316
               
               
               Cow position:chr1:51836560-51836327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:88-332
               
               
               Cow position:chr1:51628512-51628762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:89-245
               
               
               Cow position:chr1:73536729-73536573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:89-334
               
               
               Cow position:chr1:101129752-101129996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:89-422
               
               
               Cow position:chr1:12678504-12678176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:90-227
               
               
               Cow position:chr1:65909514-65909375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:90-318
               
               
               Cow position:chr1:4618875-4619115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:90-332
               
               
               Cow position:chr1:72304391-72304631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:90-334
               
               
               Cow position:chr1:85783511-85783264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 59

               
               
               Conread position:91-245
               
               
               Cow position:chr1:9443863-9444014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:91-290
               
               
               Cow position:chr1:20288104-20287896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:91-311
               
               
               Cow position:chr1:88529814-88530026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:91-318
               
               
               Cow position:chr1:57637353-57637126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:91-328
               
               
               Cow position:chr1:93499608-93499366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:91-333
               
               
               Cow position:chr1:91039188-91039420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:92-245
               
               
               Cow position:chr1:95178939-95178786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 125

               
               
               Conread position:92-289
               
               
               Cow position:chr1:53613212-53613410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:92-309
               
               
               Cow position:chr1:7442967-7442748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-317
               
               
               Cow position:chr1:19998057-19998280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:92-317
               
               
               Cow position:chr1:75967416-75967191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 144

               
               
               Conread position:92-318
               
               
               Cow position:chr1:4680110-4679887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:92-318
               
               
               Cow position:chr1:34000896-34000659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:92-326
               
               
               Cow position:chr1:46939873-46940116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:92-330
               
               
               Cow position:chr1:87888385-87888143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:92-332
               
               
               Cow position:chr1:1878013-1877767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:92-360
               
               
               Cow position:chr1:63905489-63905762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-364
               
               
               Cow position:chr1:100537792-100537518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:93-326
               
               
               Cow position:chr1:84116378-84116148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:93-342
               
               
               Cow position:chr1:80555211-80555449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:94-318
               
               
               Cow position:chr1:81472856-81472633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:95-333
               
               
               Cow position:chr1:57575780-57576024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:96-266
               
               
               Cow position:chr1:83593820-83594002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:96-308
               
               
               Cow position:chr1:15311849-15311632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:97-252
               
               
               Cow position:chr1:91834208-91834053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:97-330
               
               
               Cow position:chr1:79663690-79663924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):137, 10

               
               
               Conread position:97-332
               
               
               Cow position:chr1:23633931-23634160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:97-415
               
               
               Cow position:chr1:12222624-12222940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 244

               
               
               Conread position:97-415
               
               
               Cow position:chr1:78750707-78751037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 269

               
               
               Conread position:98-414
               
               
               Cow position:chr1:27495464-27495164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:100-240
               
               
               Cow position:chr1:32596434-32596289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:100-405
               
               
               Cow position:chr1:94212207-94211909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:101-259
               
               
               Cow position:chr1:60372287-60372447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:101-335
               
               
               Cow position:chr1:98380596-98380840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:102-279
               
               
               Cow position:chr1:62291714-62291893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:102-356
               
               
               Cow position:chr1:21131120-21131371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:103-318
               
               
               Cow position:chr1:33702092-33701874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 31

               
               
               Conread position:104-279
               
               
               Cow position:chr1:72422600-72422775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:104-328
               
               
               Cow position:chr1:731969-732181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:104-415
               
               
               Cow position:chr1:22628667-22628974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:105-318
               
               
               Cow position:chr1:2075368-2075574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:105-318
               
               
               Cow position:chr1:85361832-85361609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:105-324
               
               
               Cow position:chr1:83982399-83982629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-326
               
               
               Cow position:chr1:92370388-92370613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-332
               
               
               Cow position:chr1:71748039-71748267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:105-415
               
               
               Cow position:chr1:11772104-11772416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:105-415
               
               
               Cow position:chr1:20125586-20125276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 134

               
               
               Conread position:106-252
               
               
               Cow position:chr1:69540270-69540123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:106-305
               
               
               Cow position:chr1:53410945-53411143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:106-332
               
               
               Cow position:chr1:52506584-52506804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:106-332
               
               
               Cow position:chr1:77099580-77099800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):186, 34

               
               
               Conread position:106-415
               
               
               Cow position:chr1:50634430-50634746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 256

               
               
               Conread position:106-415
               
               
               Cow position:chr1:76850755-76851066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:107-318
               
               
               Cow position:chr1:98708410-98708196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-326
               
               
               Cow position:chr1:37646032-37646255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):6, 133

               
               
               Conread position:107-326
               
               
               Cow position:chr1:95327181-95327407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:107-330
               
               
               Cow position:chr1:42887297-42887521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:107-413
               
               
               Cow position:chr1:56073491-56073801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 36

               
               
               Conread position:107-415
               
               
               Cow position:chr1:81180002-81180320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 241

               
               
               Conread position:108-317
               
               
               Cow position:chr1:68282772-68282549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:108-328
               
               
               Cow position:chr1:67014357-67014128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 200

               
               
               Conread position:109-235
               
               
               Cow position:chr1:97938937-97938810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:110-293
               
               
               Cow position:chr1:55194497-55194685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:110-305
               
               
               Cow position:chr1:20799852-20799639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:110-318
               
               
               Cow position:chr1:43211732-43211532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:111-318
               
               
               Cow position:chr1:89395567-89395345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:111-334
               
               
               Cow position:chr1:97806754-97806530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:112-240
               
               
               Cow position:chr1:7748185-7748053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:112-240
               
               
               Cow position:chr1:7752351-7752219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:114-311
               
               
               Cow position:chr1:89729011-89729195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:114-318
               
               
               Cow position:chr1:42968352-42968562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:114-415
               
               
               Cow position:chr1:67821248-67821553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:115-365
               
               
               Cow position:chr1:57969092-57969334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:116-318
               
               
               Cow position:chr1:21093053-21092845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:117-289
               
               
               Cow position:chr1:86484925-86484738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-327
               
               
               Cow position:chr1:61246199-61246406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:117-332
               
               
               Cow position:chr1:71325288-71325507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:117-347
               
               
               Cow position:chr1:3790106-3790331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:118-318
               
               
               Cow position:chr1:57305790-57305586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:119-415
               
               
               Cow position:chr1:88338646-88338362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:121-318
               
               
               Cow position:chr1:36613319-36613521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-318
               
               
               Cow position:chr1:44136511-44136708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:123-263
               
               
               Cow position:chr1:7450084-7449941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:123-314
               
               
               Cow position:chr1:54732514-54732699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:124-318
               
               
               Cow position:chr1:24528655-24528844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:127-307
               
               
               Cow position:chr1:19545149-19545334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:127-307
               
               
               Cow position:chr1:39702771-39702595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:127-317
               
               
               Cow position:chr1:43893874-43893683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:127-318
               
               
               Cow position:chr1:92551185-92551381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:127-321
               
               
               Cow position:chr1:30504421-30504222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:127-328
               
               
               Cow position:chr1:58889345-58889551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:128-311
               
               
               Cow position:chr1:19516456-19516645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:128-318
               
               
               Cow position:chr1:64160289-64160095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 175

               
               
               Conread position:129-334
               
               
               Cow position:chr1:31347968-31348170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:130-415
               
               
               Cow position:chr1:52496730-52496441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 171

               
               
               Conread position:131-318
               
               
               Cow position:chr1:84786721-84786525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:132-332
               
               
               Cow position:chr1:52488018-52488218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:133-318
               
               
               Cow position:chr1:99118333-99118139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:137-324
               
               
               Cow position:chr1:3757895-3757700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:137-339
               
               
               Cow position:chr1:25856625-25856422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:138-332
               
               
               Cow position:chr1:55686279-55686479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 155

               
               
               Conread position:139-309
               
               
               Cow position:chr1:32631404-32631229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:139-316
               
               
               Cow position:chr1:74013322-74013511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:139-318
               
               
               Cow position:chr1:33717165-33716975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:146-306
               
               
               Cow position:chr1:99543119-99543283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:150-318
               
               
               Cow position:chr1:40062378-40062202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:150-327
               
               
               Cow position:chr1:67916963-67916781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:150-363
               
               
               Cow position:chr1:52912950-52913153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:151-332
               
               
               Cow position:chr1:5990837-5990654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:152-318
               
               
               Cow position:chr1:24201823-24201985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:152-318
               
               
               Cow position:chr1:73757012-73756847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:152-358
               
               
               Cow position:chr1:92517650-92517847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:153-318
               
               
               Cow position:chr1:95071907-95071740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:156-316
               
               
               Cow position:chr1:22227764-22227613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:156-318
               
               
               Cow position:chr1:24225584-24225742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:160-318
               
               
               Cow position:chr1:26159512-26159678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:161-317
               
               
               Cow position:chr1:56229166-56229009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:163-414
               
               
               Cow position:chr1:15028593-15028343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):86, 133

               
               
               Conread position:166-318
               
               
               Cow position:chr1:58439140-58439292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:168-332
               
               
               Cow position:chr1:61304589-61304421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:169-310
               
               
               Cow position:chr1:62996401-62996257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 133

               
               
               Conread position:169-317
               
               
               Cow position:chr1:3872758-3872606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:169-330
               
               
               Cow position:chr1:3076490-3076649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:169-330
               
               
               Cow position:chr1:101714028-101713858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:169-332
               
               
               Cow position:chr1:52563888-52564052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:171-413
               
               
               Cow position:chr1:46821913-46821681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:173-317
               
               
               Cow position:chr1:94378935-94378787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:173-338
               
               
               Cow position:chr1:52510340-52510509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:173-357
               
               
               Cow position:chr1:86020160-86020352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 6

               
               
               Conread position:173-358
               
               
               Cow position:chr1:15367050-15367235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:173-415
               
               
               Cow position:chr1:65144558-65144807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:175-318
               
               
               Cow position:chr1:54294756-54294908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:175-318
               
               
               Cow position:chr1:81579667-81579517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:179-355
               
               
               Cow position:chr1:101852177-101852357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:179-358
               
               
               Cow position:chr1:57981650-57981835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):54, 127

               
               
               Conread position:189-415
               
               
               Cow position:chr1:72813298-72813080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:193-367
               
               
               Cow position:chr1:98023511-98023690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:213-368
               
               
               Cow position:chr1:10881682-10881522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:1-231
               
               
               Cow position:chr10:42892931-42893150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:1-235
               
               
               Cow position:chr10:24375584-24375363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:1-240
               
               
               Cow position:chr10:8219326-8219091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:1-253
               
               
               Cow position:chr10:13617613-13617849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:1-293
               
               
               Cow position:chr10:67581325-67581038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-296
               
               
               Cow position:chr10:29252204-29251907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:1-305
               
               
               Cow position:chr10:48316907-48317218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:1-310
               
               
               Cow position:chr10:22567410-22567706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-310
               
               
               Cow position:chr10:29816642-29816321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 147

               
               
               Conread position:1-314
               
               
               Cow position:chr10:23506452-23506758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:1-316
               
               
               Cow position:chr10:56705547-56705859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:1-318
               
               
               Cow position:chr10:15868291-15867959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):5, 91

               
               
               Conread position:1-318
               
               
               Cow position:chr10:21657461-21657144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:1-318
               
               
               Cow position:chr10:24871204-24870888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:1-318
               
               
               Cow position:chr10:33891043-33891364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-318
               
               
               Cow position:chr10:38942472-38942149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:1-330
               
               
               Cow position:chr10:40420807-40421136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:1-332
               
               
               Cow position:chr10:22321563-22321236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:1-332
               
               
               Cow position:chr10:29188315-29188651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-332
               
               
               Cow position:chr10:31466787-31466453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:1-332
               
               
               Cow position:chr10:31791219-31791551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:1-332
               
               
               Cow position:chr10:50015957-50016283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:1-338
               
               
               Cow position:chr10:39081437-39081097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:1-375
               
               
               Cow position:chr10:58935129-58935522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:1-415
               
               
               Cow position:chr10:5151386-5150976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:2-170
               
               
               Cow position:chr10:34465079-34464914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):137, 82

               
               
               Conread position:2-227
               
               
               Cow position:chr10:39303809-39304032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:2-240
               
               
               Cow position:chr10:68927190-68926963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:2-279
               
               
               Cow position:chr10:2853600-2853884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:2-293
               
               
               Cow position:chr10:37668118-37668412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 89

               
               
               Conread position:2-314
               
               
               Cow position:chr10:24132786-24133093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:2-317
               
               
               Cow position:chr10:24744583-24744282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):228, 77

               
               
               Conread position:3-175
               
               
               Cow position:chr10:52069448-52069614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):136, 84

               
               
               Conread position:3-231
               
               
               Cow position:chr10:47651335-47651117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):199, 85

               
               
               Conread position:3-250
               
               
               Cow position:chr10:24781225-24780980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:3-292
               
               
               Cow position:chr10:6038302-6038587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:3-318
               
               
               Cow position:chr10:37818520-37818836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:3-326
               
               
               Cow position:chr10:50359953-50359630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):184, 64

               
               
               Conread position:3-334
               
               
               Cow position:chr10:35911721-35912037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:3-415
               
               
               Cow position:chr10:37529229-37529646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:5-331
               
               
               Cow position:chr10:56475503-56475179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:6-326
               
               
               Cow position:chr10:33915032-33915336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:7-153
               
               
               Cow position:chr10:48178389-48178246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:7-260
               
               
               Cow position:chr10:38513208-38512955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:7-290
               
               
               Cow position:chr10:48257244-48257528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:7-291
               
               
               Cow position:chr10:47773762-47773484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:7-305
               
               
               Cow position:chr10:58690943-58690640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):30, 139

               
               
               Conread position:7-318
               
               
               Cow position:chr10:26209215-26209538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:7-318
               
               
               Cow position:chr10:29279478-29279168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 57

               
               
               Conread position:7-318
               
               
               Cow position:chr10:64876552-64876240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:7-326
               
               
               Cow position:chr10:21424646-21424969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-328
               
               
               Cow position:chr10:35752930-35753247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 9

               
               
               Conread position:7-332
               
               
               Cow position:chr10:6568264-6567944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:7-333
               
               
               Cow position:chr10:15817761-15818088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:7-333
               
               
               Cow position:chr10:24022249-24022570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):193, 90

               
               
               Conread position:7-335
               
               
               Cow position:chr10:21082413-21082102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 82

               
               
               Conread position:7-339
               
               
               Cow position:chr10:9341703-9342036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-354
               
               
               Cow position:chr10:25699682-25699353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 90

               
               
               Conread position:7-355
               
               
               Cow position:chr10:49038617-49038246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-364
               
               
               Cow position:chr10:30450030-30450380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:7-415
               
               
               Cow position:chr10:12315182-12314794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:7-415
               
               
               Cow position:chr10:22616608-22617009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:7-415
               
               
               Cow position:chr10:40738026-40737640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):185, 46

               
               
               Conread position:7-415
               
               
               Cow position:chr10:58608135-58607739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:8-191
               
               
               Cow position:chr10:331412-331230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:8-244
               
               
               Cow position:chr10:50134772-50135005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):55, 68

               
               
               Conread position:8-318
               
               
               Cow position:chr10:22479694-22480000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:9-125
               
               
               Cow position:chr10:55319526-55319411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:9-137
               
               
               Cow position:chr10:53365058-53364935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-165
               
               
               Cow position:chr10:36107387-36107537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-166
               
               
               Cow position:chr10:34660212-34660362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-175
               
               
               Cow position:chr10:31004986-31005148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr10:6768680-6768842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-179
               
               
               Cow position:chr10:55518755-55518583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:9-183
               
               
               Cow position:chr10:52881588-52881757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:9-206
               
               
               Cow position:chr10:37884767-37884954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:9-210
               
               
               Cow position:chr10:6532128-6532316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):173, 34

               
               
               Conread position:9-210
               
               
               Cow position:chr10:47724977-47724783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-212
               
               
               Cow position:chr10:33240649-33240844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:9-220
               
               
               Cow position:chr10:4109619-4109415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-222
               
               
               Cow position:chr10:45965530-45965324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-229
               
               
               Cow position:chr10:11463636-11463850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:9-230
               
               
               Cow position:chr10:45658175-45657960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:9-231
               
               
               Cow position:chr10:22433879-22434105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:9-231
               
               
               Cow position:chr10:52695696-52695914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-232
               
               
               Cow position:chr10:747500-747278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:9-232
               
               
               Cow position:chr10:16986362-16986144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:9-232
               
               
               Cow position:chr10:29339366-29339571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-235
               
               
               Cow position:chr10:48513051-48513273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):88, 97

               
               
               Conread position:9-238
               
               
               Cow position:chr10:4148520-4148287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:9-240
               
               
               Cow position:chr10:45679048-45678822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):172, 67

               
               
               Conread position:9-241
               
               
               Cow position:chr10:4184226-4183996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-244
               
               
               Cow position:chr10:26145379-26145618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:9-245
               
               
               Cow position:chr10:37173416-37173648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:9-252
               
               
               Cow position:chr10:47690418-47690186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-261
               
               
               Cow position:chr10:41254543-41254782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-262
               
               
               Cow position:chr10:28395271-28395513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-262
               
               
               Cow position:chr10:55930228-55929976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):173, 91

               
               
               Conread position:9-264
               
               
               Cow position:chr10:46492964-46493226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-264
               
               
               Cow position:chr10:66194274-66194527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-266
               
               
               Cow position:chr10:35778870-35779123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-275
               
               
               Cow position:chr10:45378974-45379242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-277
               
               
               Cow position:chr10:28152348-28152619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-277
               
               
               Cow position:chr10:40163903-40164165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:9-287
               
               
               Cow position:chr10:32029802-32030070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-290
               
               
               Cow position:chr10:8923310-8923025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-290
               
               
               Cow position:chr10:22341608-22341316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:9-290
               
               
               Cow position:chr10:22396283-22396006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-293
               
               
               Cow position:chr10:28776381-28776117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:9-294
               
               
               Cow position:chr10:31779238-31779521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-296
               
               
               Cow position:chr10:36490050-36489764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:9-296
               
               
               Cow position:chr10:38370424-38370717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:9-296
               
               
               Cow position:chr10:39875123-39875400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):224, 58

               
               
               Conread position:9-296
               
               
               Cow position:chr10:60960965-60960685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:9-300
               
               
               Cow position:chr10:24312856-24313148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:9-302
               
               
               Cow position:chr10:23576577-23576282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-304
               
               
               Cow position:chr10:41802869-41803159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:9-307
               
               
               Cow position:chr10:3998936-3998639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-307
               
               
               Cow position:chr10:24732334-24732044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):221, 26

               
               
               Conread position:9-308
               
               
               Cow position:chr10:59151834-59152130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-309
               
               
               Cow position:chr10:59571932-59571629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-310
               
               
               Cow position:chr10:56828287-56828589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-311
               
               
               Cow position:chr10:805221-804925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):125, 49

               
               
               Conread position:9-311
               
               
               Cow position:chr10:28105049-28105342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-312
               
               
               Cow position:chr10:17863616-17863313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):173, 70

               
               
               Conread position:9-312
               
               
               Cow position:chr10:29588809-29589113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):172, 82

               
               
               Conread position:9-314
               
               
               Cow position:chr10:52589651-52589966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:9-315
               
               
               Cow position:chr10:18042210-18041911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-315
               
               
               Cow position:chr10:19372306-19372602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-315
               
               
               Cow position:chr10:19590732-19591038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:9-315
               
               
               Cow position:chr10:63276424-63276117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr10:11080994-11080683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):132, 82

               
               
               Conread position:9-316
               
               
               Cow position:chr10:19895424-19895125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:9-316
               
               
               Cow position:chr10:35731497-35731800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-316
               
               
               Cow position:chr10:39398486-39398793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:9-316
               
               
               Cow position:chr10:51314037-51313714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:9-317
               
               
               Cow position:chr10:6489902-6489590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-317
               
               
               Cow position:chr10:29360949-29360632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 161

               
               
               Conread position:9-317
               
               
               Cow position:chr10:43487743-43487435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:9-318
               
               
               Cow position:chr10:1749615-1749300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:9-318
               
               
               Cow position:chr10:2974056-2974366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr10:9288078-9287790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-318
               
               
               Cow position:chr10:13311763-13311455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-318
               
               
               Cow position:chr10:13391017-13391330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr10:14817129-14817440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr10:14850248-14849955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:9-318
               
               
               Cow position:chr10:15871842-15872139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr10:20553215-20552910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:9-318
               
               
               Cow position:chr10:21447879-21448170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:9-318
               
               
               Cow position:chr10:22472355-22472039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 122

               
               
               Conread position:9-318
               
               
               Cow position:chr10:22527871-22528178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:9-318
               
               
               Cow position:chr10:23936507-23936207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):222, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr10:24307893-24308173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr10:27362541-27362217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 195

               
               
               Conread position:9-318
               
               
               Cow position:chr10:28038903-28039208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr10:30460684-30460368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr10:31362183-31362486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):221, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr10:32583942-32583639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-318
               
               
               Cow position:chr10:33215834-33215520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr10:39268625-39268319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:9-318
               
               
               Cow position:chr10:39939402-39939706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):129, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr10:41408305-41408010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr10:43438905-43438593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:9-318
               
               
               Cow position:chr10:44783375-44783064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr10:45371086-45370781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr10:48741129-48741434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:9-318
               
               
               Cow position:chr10:53084200-53083888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr10:54469363-54469659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr10:59588146-59588442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr10:60388734-60389035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):233, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr10:62286587-62286275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-318
               
               
               Cow position:chr10:64285764-64286073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr10:68829254-68829543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):178, 84

               
               
               Conread position:9-321
               
               
               Cow position:chr10:22520131-22520443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:9-324
               
               
               Cow position:chr10:14098302-14098605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:9-325
               
               
               Cow position:chr10:45770078-45769757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:9-326
               
               
               Cow position:chr10:10751960-10752265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):173, 34

               
               
               Conread position:9-326
               
               
               Cow position:chr10:56080141-56080458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr10:15293296-15292985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:9-328
               
               
               Cow position:chr10:38725685-38725373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:9-328
               
               
               Cow position:chr10:53247973-53248295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:9-328
               
               
               Cow position:chr10:54848808-54848491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:9-329
               
               
               Cow position:chr10:16645156-16645482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 90

               
               
               Conread position:9-330
               
               
               Cow position:chr10:10964018-10963707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:9-330
               
               
               Cow position:chr10:21462273-21461952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:9-330
               
               
               Cow position:chr10:29070187-29069867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-330
               
               
               Cow position:chr10:42637263-42636940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-331
               
               
               Cow position:chr10:30224714-30224393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:9-331
               
               
               Cow position:chr10:34607592-34607268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-331
               
               
               Cow position:chr10:49169004-49169346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 310

               
               
               Conread position:9-332
               
               
               Cow position:chr10:13368383-13368060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:9-332
               
               
               Cow position:chr10:27749703-27749384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr10:36002228-36001915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-332
               
               
               Cow position:chr10:41626625-41626318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-332
               
               
               Cow position:chr10:52569622-52569304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr10:53674856-53674532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr10:59675224-59675543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):174, 89

               
               
               Conread position:9-333
               
               
               Cow position:chr10:34655078-34655403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:9-333
               
               
               Cow position:chr10:56835320-56834987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):69, 94

               
               
               Conread position:9-334
               
               
               Cow position:chr10:8093286-8093608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):221, 90

               
               
               Conread position:9-334
               
               
               Cow position:chr10:57461387-57461073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-335
               
               
               Cow position:chr10:32775130-32774821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:9-335
               
               
               Cow position:chr10:35902925-35903238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):221, 77

               
               
               Conread position:9-335
               
               
               Cow position:chr10:37014664-37014345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):180, 91

               
               
               Conread position:9-335
               
               
               Cow position:chr10:69934750-69935071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):170, 20

               
               
               Conread position:9-337
               
               
               Cow position:chr10:59663941-59664262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:9-338
               
               
               Cow position:chr10:54477133-54476815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-340
               
               
               Cow position:chr10:2849379-2849056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 5

               
               
               Conread position:9-342
               
               
               Cow position:chr10:23056047-23056379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-344
               
               
               Cow position:chr10:42745948-42745610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-347
               
               
               Cow position:chr10:52296525-52296192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:9-350
               
               
               Cow position:chr10:29919808-29920140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-350
               
               
               Cow position:chr10:53357927-53357588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):207, 26

               
               
               Conread position:9-351
               
               
               Cow position:chr10:1976287-1976630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-351
               
               
               Cow position:chr10:17844797-17844459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:9-359
               
               
               Cow position:chr10:28176358-28176712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 47

               
               
               Conread position:9-378
               
               
               Cow position:chr10:15318915-15318543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-404
               
               
               Cow position:chr10:9576018-9576409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-413
               
               
               Cow position:chr10:27716810-27717202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-413
               
               
               Cow position:chr10:28670787-28671187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 93

               
               
               Conread position:9-413
               
               
               Cow position:chr10:59839257-59839655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 5

               
               
               Conread position:9-414
               
               
               Cow position:chr10:30352880-30352472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-415
               
               
               Cow position:chr10:25854-25452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):172, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr10:1428068-1427675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:9-415
               
               
               Cow position:chr10:1488862-1488481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr10:6505382-6504985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):219, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr10:10720642-10721050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr10:17073334-17073718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):215, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr10:17176062-17175667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-415
               
               
               Cow position:chr10:23886429-23886811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):193, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr10:24756442-24756068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr10:26577580-26577184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:9-415
               
               
               Cow position:chr10:31528005-31527628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-415
               
               
               Cow position:chr10:38518597-38518997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):144, 66

               
               
               Conread position:9-415
               
               
               Cow position:chr10:38944287-38943891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:9-415
               
               
               Cow position:chr10:49846805-49846410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr10:56733064-56732662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-416
               
               
               Cow position:chr10:10469010-10468612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:285
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-418
               
               
               Cow position:chr10:45337710-45337298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 165

               
               
               Conread position:9-422
               
               
               Cow position:chr10:53336374-53336775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:10-165
               
               
               Cow position:chr10:63628218-63628058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:10-166
               
               
               Cow position:chr10:19098867-19098717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:10-241
               
               
               Cow position:chr10:55801332-55801100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:10-279
               
               
               Cow position:chr10:60722128-60722382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:10-279
               
               
               Cow position:chr10:64042114-64041844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 87

               
               
               Conread position:10-310
               
               
               Cow position:chr10:20997258-20997545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):179, 40

               
               
               Conread position:10-332
               
               
               Cow position:chr10:31374059-31374397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:10-332
               
               
               Cow position:chr10:35767060-35767369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):129, 24

               
               
               Conread position:10-332
               
               
               Cow position:chr10:64182477-64182160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:10-340
               
               
               Cow position:chr10:13586733-13586415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-356
               
               
               Cow position:chr10:61305293-61304967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 16

               
               
               Conread position:10-364
               
               
               Cow position:chr10:37235523-37235874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 67

               
               
               Conread position:10-415
               
               
               Cow position:chr10:24745149-24744755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:10-415
               
               
               Cow position:chr10:24763513-24763109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:10-415
               
               
               Cow position:chr10:34898008-34897628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):303, 90

               
               
               Conread position:11-171
               
               
               Cow position:chr10:12100515-12100674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:11-186
               
               
               Cow position:chr10:6664062-6663886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:11-210
               
               
               Cow position:chr10:16683778-16683978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-252
               
               
               Cow position:chr10:12486292-12486061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-264
               
               
               Cow position:chr10:7817136-7816885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-291
               
               
               Cow position:chr10:65071340-65071061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-296
               
               
               Cow position:chr10:24560959-24561242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):128, 93

               
               
               Conread position:11-307
               
               
               Cow position:chr10:11221731-11221444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):170, 49

               
               
               Conread position:11-312
               
               
               Cow position:chr10:8413022-8413321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-316
               
               
               Cow position:chr10:8277581-8277267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:11-318
               
               
               Cow position:chr10:1423859-1423555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr10:2462461-2462753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:11-318
               
               
               Cow position:chr10:5543220-5543527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:11-318
               
               
               Cow position:chr10:21037331-21037033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:11-318
               
               
               Cow position:chr10:24753175-24752881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr10:34430197-34430491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr10:34906741-34906432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:11-318
               
               
               Cow position:chr10:37512210-37512525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:11-318
               
               
               Cow position:chr10:39387482-39387182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:11-318
               
               
               Cow position:chr10:49569225-49568927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 55

               
               
               Conread position:11-325
               
               
               Cow position:chr10:2304353-2304660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:11-326
               
               
               Cow position:chr10:20132500-20132812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:11-329
               
               
               Cow position:chr10:31855365-31855045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:11-332
               
               
               Cow position:chr10:10124372-10124051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):152, 44

               
               
               Conread position:11-332
               
               
               Cow position:chr10:24096344-24096670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):91, 104

               
               
               Conread position:11-332
               
               
               Cow position:chr10:56683176-56683492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 88

               
               
               Conread position:11-334
               
               
               Cow position:chr10:65072087-65072403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:11-352
               
               
               Cow position:chr10:20109917-20110242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:11-356
               
               
               Cow position:chr10:38014395-38014058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-413
               
               
               Cow position:chr10:11009438-11009059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-415
               
               
               Cow position:chr10:2613397-2613015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:11-415
               
               
               Cow position:chr10:24276697-24277130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:11-415
               
               
               Cow position:chr10:24786137-24785729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:12-316
               
               
               Cow position:chr10:32417381-32417091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:12-334
               
               
               Cow position:chr10:51306368-51306034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:12-336
               
               
               Cow position:chr10:55122834-55122499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 298

               
               
               Conread position:13-315
               
               
               Cow position:chr10:22049285-22048978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:13-346
               
               
               Cow position:chr10:31027617-31027946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):126, 78

               
               
               Conread position:14-209
               
               
               Cow position:chr10:9656497-9656704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:14-220
               
               
               Cow position:chr10:4164295-4164093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-240
               
               
               Cow position:chr10:11576794-11576573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 57

               
               
               Conread position:14-264
               
               
               Cow position:chr10:6436085-6435836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:14-289
               
               
               Cow position:chr10:54948112-54948378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-317
               
               
               Cow position:chr10:35862202-35862506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:14-318
               
               
               Cow position:chr10:12919331-12919617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:14-326
               
               
               Cow position:chr10:4311198-4310903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:14-332
               
               
               Cow position:chr10:16598714-16598398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:14-334
               
               
               Cow position:chr10:2449376-2449060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-415
               
               
               Cow position:chr10:52046896-52046500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:16-236
               
               
               Cow position:chr10:50044620-50044841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:16-278
               
               
               Cow position:chr10:25882435-25882189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):216, 19

               
               
               Conread position:16-316
               
               
               Cow position:chr10:48255201-48255498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-329
               
               
               Cow position:chr10:30455810-30456143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 275

               
               
               Conread position:16-343
               
               
               Cow position:chr10:2407107-2407410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:16-369
               
               
               Cow position:chr10:25293811-25293464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:16-430
               
               
               Cow position:chr10:41984863-41985279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:17-341
               
               
               Cow position:chr10:6642911-6642581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:19-232
               
               
               Cow position:chr10:17836972-17836766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:20-222
               
               
               Cow position:chr10:69587659-69587856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):150, 65

               
               
               Conread position:20-227
               
               
               Cow position:chr10:24422136-24422340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:20-264
               
               
               Cow position:chr10:33732847-33733092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):119, 79

               
               
               Conread position:20-290
               
               
               Cow position:chr10:54962703-54962968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-318
               
               
               Cow position:chr10:1088049-1087743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 164

               
               
               Conread position:20-318
               
               
               Cow position:chr10:20372105-20372408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:20-318
               
               
               Cow position:chr10:35857042-35857331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:20-328
               
               
               Cow position:chr10:65423884-65424198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:20-339
               
               
               Cow position:chr10:35975571-35975262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 54

               
               
               Conread position:21-246
               
               
               Cow position:chr10:35653689-35653463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 74

               
               
               Conread position:21-296
               
               
               Cow position:chr10:15462510-15462244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:21-318
               
               
               Cow position:chr10:54504623-54504325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:21-326
               
               
               Cow position:chr10:36896423-36896115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:21-331
               
               
               Cow position:chr10:57786357-57786047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):209, 71

               
               
               Conread position:21-332
               
               
               Cow position:chr10:39228166-39227866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:21-332
               
               
               Cow position:chr10:57059263-57059571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:21-351
               
               
               Cow position:chr10:6173376-6173047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 66

               
               
               Conread position:21-373
               
               
               Cow position:chr10:13765146-13765494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:21-394
               
               
               Cow position:chr10:42312921-42312560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:21-396
               
               
               Cow position:chr10:11213130-11212750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:21-405
               
               
               Cow position:chr10:7366765-7367154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):118, 43

               
               
               Conread position:21-413
               
               
               Cow position:chr10:30523044-30523421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:21-415
               
               
               Cow position:chr10:30360539-30360164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:21-415
               
               
               Cow position:chr10:57142197-57142585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 37

               
               
               Conread position:22-283
               
               
               Cow position:chr10:50609560-50609296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):98, 71

               
               
               Conread position:22-318
               
               
               Cow position:chr10:6235420-6235700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:22-318
               
               
               Cow position:chr10:23096762-23097041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:22-333
               
               
               Cow position:chr10:25149916-25149600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 82

               
               
               Conread position:23-208
               
               
               Cow position:chr10:2202105-2202287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):116, 60

               
               
               Conread position:23-219
               
               
               Cow position:chr10:60237077-60237267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):157, 64

               
               
               Conread position:23-236
               
               
               Cow position:chr10:32834839-32834627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:23-314
               
               
               Cow position:chr10:52113653-52113938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:23-318
               
               
               Cow position:chr10:6012020-6012310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:23-318
               
               
               Cow position:chr10:20095777-20095479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:23-318
               
               
               Cow position:chr10:66127875-66127580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:24-310
               
               
               Cow position:chr10:69567864-69567585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:24-361
               
               
               Cow position:chr10:53179292-53178984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):269, 69

               
               
               Conread position:25-318
               
               
               Cow position:chr10:9083312-9083022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:25-415
               
               
               Cow position:chr10:40645938-40645560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):114, 52

               
               
               Conread position:26-226
               
               
               Cow position:chr10:64838997-64839196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:26-245
               
               
               Cow position:chr10:47412090-47412303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:26-316
               
               
               Cow position:chr10:43287855-43288143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-318
               
               
               Cow position:chr10:53973858-53973572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:26-326
               
               
               Cow position:chr10:58557203-58556910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):162, 29

               
               
               Conread position:26-330
               
               
               Cow position:chr10:51696757-51696464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:26-332
               
               
               Cow position:chr10:51944377-51944072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:26-333
               
               
               Cow position:chr10:9675447-9675748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):213, 32

               
               
               Conread position:26-343
               
               
               Cow position:chr10:33867385-33867678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:26-349
               
               
               Cow position:chr10:54731035-54730704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:27-318
               
               
               Cow position:chr10:721316-721022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):112, 66

               
               
               Conread position:27-318
               
               
               Cow position:chr10:46195798-46195517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:27-332
               
               
               Cow position:chr10:63940786-63940487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:28-415
               
               
               Cow position:chr10:25342610-25342222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):114, 51

               
               
               Conread position:29-293
               
               
               Cow position:chr10:10043093-10043346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):188, 59

               
               
               Conread position:29-318
               
               
               Cow position:chr10:49045856-49045567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):110, 79

               
               
               Conread position:29-327
               
               
               Cow position:chr10:20399212-20398914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:30-219
               
               
               Cow position:chr10:48408381-48408565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-290
               
               
               Cow position:chr10:43509000-43508746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-296
               
               
               Cow position:chr10:50183034-50183302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:30-311
               
               
               Cow position:chr10:14947271-14946997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-318
               
               
               Cow position:chr10:16093223-16092939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):187, 62

               
               
               Conread position:30-318
               
               
               Cow position:chr10:37287162-37287454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr10:50533855-50534147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr10:65748959-65748681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-322
               
               
               Cow position:chr10:61839606-61839318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:30-332
               
               
               Cow position:chr10:26731636-26731940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-333
               
               
               Cow position:chr10:19394580-19394870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):159, 54

               
               
               Conread position:30-364
               
               
               Cow position:chr10:41941566-41941903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 76

               
               
               Conread position:31-266
               
               
               Cow position:chr10:38739555-38739327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:32-316
               
               
               Cow position:chr10:6516174-6516461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:32-317
               
               
               Cow position:chr10:48462333-48462617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:32-331
               
               
               Cow position:chr10:51779025-51779319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:33-205
               
               
               Cow position:chr10:39586850-39587019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:33-318
               
               
               Cow position:chr10:42454136-42453861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:34-415
               
               
               Cow position:chr10:32093811-32093427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 54

               
               
               Conread position:35-214
               
               
               Cow position:chr10:2538100-2537926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:35-296
               
               
               Cow position:chr10:52029630-52029367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:35-296
               
               
               Cow position:chr10:60358731-60358478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:35-317
               
               
               Cow position:chr10:5607649-5607367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:35-317
               
               
               Cow position:chr10:35802369-35802645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:35-318
               
               
               Cow position:chr10:24548263-24547982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:35-331
               
               
               Cow position:chr10:25479110-25478815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:35-335
               
               
               Cow position:chr10:47165874-47165584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:35-344
               
               
               Cow position:chr10:41255989-41255685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:35-373
               
               
               Cow position:chr10:34174987-34175324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:36-342
               
               
               Cow position:chr10:34554088-34554389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 57

               
               
               Conread position:37-352
               
               
               Cow position:chr10:23912501-23912806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):152, 56

               
               
               Conread position:38-245
               
               
               Cow position:chr10:36285505-36285301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:38-318
               
               
               Cow position:chr10:35904824-35905107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:38-318
               
               
               Cow position:chr10:37444216-37444493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:38-332
               
               
               Cow position:chr10:19094648-19094357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:38-338
               
               
               Cow position:chr10:60032568-60032872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 64

               
               
               Conread position:39-352
               
               
               Cow position:chr10:57457336-57457021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:40-332
               
               
               Cow position:chr10:33163719-33163419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:40-352
               
               
               Cow position:chr10:9798194-9798503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:41-416
               
               
               Cow position:chr10:37528606-37528974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:43-318
               
               
               Cow position:chr10:40906316-40906036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:43-318
               
               
               Cow position:chr10:51289248-51288978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):149, 44

               
               
               Conread position:44-256
               
               
               Cow position:chr10:59164102-59164311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:45-245
               
               
               Cow position:chr10:41794712-41794908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:45-245
               
               
               Cow position:chr10:51942784-51942592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:46-231
               
               
               Cow position:chr10:39140176-39139999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:46-332
               
               
               Cow position:chr10:52152522-52152232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:47-308
               
               
               Cow position:chr10:8170242-8169991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:47-326
               
               
               Cow position:chr10:17983176-17982900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:47-353
               
               
               Cow position:chr10:31266340-31266635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:47-356
               
               
               Cow position:chr10:20505538-20505227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 64

               
               
               Conread position:47-356
               
               
               Cow position:chr10:48388278-48388588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:52-414
               
               
               Cow position:chr10:14975807-14976166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:55-262
               
               
               Cow position:chr10:31000603-31000822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:55-316
               
               
               Cow position:chr10:64878005-64878270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:55-318
               
               
               Cow position:chr10:11486992-11487255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 180

               
               
               Conread position:55-326
               
               
               Cow position:chr10:3985413-3985162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:55-331
               
               
               Cow position:chr10:20735686-20735417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-332
               
               
               Cow position:chr10:19104187-19104473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-333
               
               
               Cow position:chr10:46227077-46226795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:55-334
               
               
               Cow position:chr10:6986432-6986158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:55-415
               
               
               Cow position:chr10:15294352-15293995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:56-209
               
               
               Cow position:chr10:8321687-8321837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:56-310
               
               
               Cow position:chr10:31812450-31812686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:56-328
               
               
               Cow position:chr10:39110027-39110282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:56-329
               
               
               Cow position:chr10:22843669-22843395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:56-352
               
               
               Cow position:chr10:21708918-21709203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:56-413
               
               
               Cow position:chr10:668865-668504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:57-296
               
               
               Cow position:chr10:50200694-50200458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:57-345
               
               
               Cow position:chr10:67627010-67627289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:58-318
               
               
               Cow position:chr10:19678855-19678591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:58-330
               
               
               Cow position:chr10:40543030-40543310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:59-415
               
               
               Cow position:chr10:20543507-20543153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:62-314
               
               
               Cow position:chr10:37709054-37709307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):168, 23

               
               
               Conread position:62-315
               
               
               Cow position:chr10:25045711-25045956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:63-328
               
               
               Cow position:chr10:6530179-6529912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:64-235
               
               
               Cow position:chr10:42115234-42115063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:64-318
               
               
               Cow position:chr10:19402914-19402659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:69-415
               
               
               Cow position:chr10:59675635-59675990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:72-348
               
               
               Cow position:chr10:24871858-24871581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:74-318
               
               
               Cow position:chr10:45728970-45729199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:74-329
               
               
               Cow position:chr10:54799590-54799330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 135

               
               
               Conread position:74-369
               
               
               Cow position:chr10:1351910-1351609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:80-232
               
               
               Cow position:chr10:62642954-62642805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:82-318
               
               
               Cow position:chr10:8760172-8760401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:82-318
               
               
               Cow position:chr10:43450950-43451196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:82-415
               
               
               Cow position:chr10:53057700-53058038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:83-303
               
               
               Cow position:chr10:59141396-59141166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:83-331
               
               
               Cow position:chr10:31400932-31401188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:83-415
               
               
               Cow position:chr10:22786858-22786535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:84-278
               
               
               Cow position:chr10:16414623-16414823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:84-296
               
               
               Cow position:chr10:35791892-35791678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:84-318
               
               
               Cow position:chr10:24971651-24971873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:84-326
               
               
               Cow position:chr10:62353422-62353181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:84-332
               
               
               Cow position:chr10:8475828-8475571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:84-333
               
               
               Cow position:chr10:35026439-35026188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-368
               
               
               Cow position:chr10:48259267-48259557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:84-415
               
               
               Cow position:chr10:41737268-41736940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:85-318
               
               
               Cow position:chr10:20897266-20897026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:85-364
               
               
               Cow position:chr10:16432338-16432630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:86-318
               
               
               Cow position:chr10:3180663-3180896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:87-240
               
               
               Cow position:chr10:1201893-1201740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:87-315
               
               
               Cow position:chr10:34300459-34300234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:87-333
               
               
               Cow position:chr10:65132919-65132667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:88-335
               
               
               Cow position:chr10:50390733-50390489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:88-415
               
               
               Cow position:chr10:1978712-1979038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:89-262
               
               
               Cow position:chr10:10148612-10148429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:89-293
               
               
               Cow position:chr10:11060155-11059949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):153, 48

               
               
               Conread position:89-307
               
               
               Cow position:chr10:69558880-69558661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:89-317
               
               
               Cow position:chr10:8077189-8077428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:89-335
               
               
               Cow position:chr10:16599069-16599325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:90-318
               
               
               Cow position:chr10:67443149-67443382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:91-317
               
               
               Cow position:chr10:24755470-24755701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:91-318
               
               
               Cow position:chr10:44817741-44817506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:91-318
               
               
               Cow position:chr10:49146476-49146256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:91-322
               
               
               Cow position:chr10:61588308-61588544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:91-331
               
               
               Cow position:chr10:46829832-46829585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:91-332
               
               
               Cow position:chr10:32503404-32503160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):48, 211

               
               
               Conread position:91-356
               
               
               Cow position:chr10:14909524-14909259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:92-246
               
               
               Cow position:chr10:58612670-58612818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:92-306
               
               
               Cow position:chr10:49456133-49456341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:92-307
               
               
               Cow position:chr10:44771610-44771390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-330
               
               
               Cow position:chr10:62114643-62114409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:92-333
               
               
               Cow position:chr10:7737758-7737499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:93-264
               
               
               Cow position:chr10:30787661-30787831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:93-352
               
               
               Cow position:chr10:39314665-39314398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:94-318
               
               
               Cow position:chr10:33002289-33002516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:95-240
               
               
               Cow position:chr10:67020578-67020431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:96-307
               
               
               Cow position:chr10:9445063-9445279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-330
               
               
               Cow position:chr10:60936896-60936664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:97-208
               
               
               Cow position:chr10:48500052-48499942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 53

               
               
               Conread position:98-318
               
               
               Cow position:chr10:2394518-2394739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:98-332
               
               
               Cow position:chr10:57033842-57034081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:98-362
               
               
               Cow position:chr10:22652649-22652373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:99-364
               
               
               Cow position:chr10:65130715-65130985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:100-333
               
               
               Cow position:chr10:10699571-10699802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):142, 13

               
               
               Conread position:100-415
               
               
               Cow position:chr10:34661367-34661685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:100-415
               
               
               Cow position:chr10:64961251-64960938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:101-296
               
               
               Cow position:chr10:37822778-37822982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:101-296
               
               
               Cow position:chr10:46801060-46801259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:101-316
               
               
               Cow position:chr10:48377696-48377921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:101-332
               
               
               Cow position:chr10:69698931-69698693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:104-226
               
               
               Cow position:chr10:4484610-4484486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-318
               
               
               Cow position:chr10:10048627-10048408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:104-337
               
               
               Cow position:chr10:16740113-16740351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:104-338
               
               
               Cow position:chr10:8923881-8923638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-415
               
               
               Cow position:chr10:39774090-39774396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:105-242
               
               
               Cow position:chr10:7291854-7291993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-278
               
               
               Cow position:chr10:47091616-47091794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:105-303
               
               
               Cow position:chr10:318754-318956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-304
               
               
               Cow position:chr10:5502967-5502761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-317
               
               
               Cow position:chr10:29211900-29211682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-325
               
               
               Cow position:chr10:54936169-54936396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:106-264
               
               
               Cow position:chr10:35796387-35796540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:106-318
               
               
               Cow position:chr10:20447035-20446823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:106-318
               
               
               Cow position:chr10:57736221-57736441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:106-331
               
               
               Cow position:chr10:77324-77100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:106-332
               
               
               Cow position:chr10:47976819-47976597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:106-333
               
               
               Cow position:chr10:6719834-6719609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 21

               
               
               Conread position:106-342
               
               
               Cow position:chr10:15618868-15619108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:106-358
               
               
               Cow position:chr10:58259577-58259832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:107-402
               
               
               Cow position:chr10:28933682-28933377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:108-317
               
               
               Cow position:chr10:53934796-53935015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 174

               
               
               Conread position:108-318
               
               
               Cow position:chr10:41397421-41397203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:108-333
               
               
               Cow position:chr10:10134923-10134687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 202

               
               
               Conread position:110-318
               
               
               Cow position:chr10:25936179-25935966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:110-356
               
               
               Cow position:chr10:55097752-55097996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:112-331
               
               
               Cow position:chr10:22390525-22390307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 180

               
               
               Conread position:112-341
               
               
               Cow position:chr10:38449361-38449598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):27, 181

               
               
               Conread position:113-369
               
               
               Cow position:chr10:65791765-65791514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:117-316
               
               
               Cow position:chr10:67716916-67716709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:121-311
               
               
               Cow position:chr10:23376537-23376733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:121-329
               
               
               Cow position:chr10:29628024-29628238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:121-415
               
               
               Cow position:chr10:40270527-40270248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:123-328
               
               
               Cow position:chr10:20812102-20811888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:124-318
               
               
               Cow position:chr10:41916760-41916951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:126-316
               
               
               Cow position:chr10:28836140-28835956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:126-364
               
               
               Cow position:chr10:42459412-42459659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 189

               
               
               Conread position:127-290
               
               
               Cow position:chr10:11609529-11609358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-317
               
               
               Cow position:chr10:16986159-16985963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-317
               
               
               Cow position:chr10:39646183-39646380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-415
               
               
               Cow position:chr10:6345998-6345703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):12, 205

               
               
               Conread position:128-414
               
               
               Cow position:chr10:30746319-30746038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:130-333
               
               
               Cow position:chr10:5847586-5847795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:132-331
               
               
               Cow position:chr10:55733685-55733889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:133-329
               
               
               Cow position:chr10:6852184-6851984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:136-332
               
               
               Cow position:chr10:25509611-25509408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:138-232
               
               
               Cow position:chr10:7095835-7095741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:138-277
               
               
               Cow position:chr10:9586610-9586753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:138-293
               
               
               Cow position:chr10:32928674-32928515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:138-318
               
               
               Cow position:chr10:35901237-35901059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):159, 111

               
               
               Conread position:138-332
               
               
               Cow position:chr10:47159013-47158815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:138-333
               
               
               Cow position:chr10:8934390-8934195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:138-415
               
               
               Cow position:chr10:7328635-7328358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:139-332
               
               
               Cow position:chr10:56095133-56094938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 117

               
               
               Conread position:142-318
               
               
               Cow position:chr10:19503569-19503750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:146-334
               
               
               Cow position:chr10:26607985-26608181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:146-414
               
               
               Cow position:chr10:28569970-28569698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):75, 220

               
               
               Conread position:150-309
               
               
               Cow position:chr10:35715813-35715978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-338
               
               
               Cow position:chr10:42230556-42230368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-318
               
               
               Cow position:chr10:30914393-30914220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:152-326
               
               
               Cow position:chr10:54141786-54141601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:155-335
               
               
               Cow position:chr10:5264589-5264407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):84, 51

               
               
               Conread position:155-415
               
               
               Cow position:chr10:20294771-20295031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:157-318
               
               
               Cow position:chr10:16623246-16623413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:158-310
               
               
               Cow position:chr10:734596-734751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:164-327
               
               
               Cow position:chr10:10046171-10046334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:166-310
               
               
               Cow position:chr10:39123818-39123970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:169-317
               
               
               Cow position:chr10:41637532-41637374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 141

               
               
               Conread position:169-326
               
               
               Cow position:chr10:14188941-14189096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:174-369
               
               
               Cow position:chr10:39245037-39245236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:182-334
               
               
               Cow position:chr10:23872598-23872754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:182-364
               
               
               Cow position:chr10:5886756-5886569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:184-347
               
               
               Cow position:chr10:38948457-38948616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 77

               
               
               Conread position:188-405
               
               
               Cow position:chr10:42123960-42124177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:195-368
               
               
               Cow position:chr10:48369754-48369935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr11:55494726-55494522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-280
               
               
               Cow position:chr11:33348140-33348418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:1-293
               
               
               Cow position:chr11:77750725-77751014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:1-316
               
               
               Cow position:chr11:18144771-18145074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:1-317
               
               
               Cow position:chr11:51043888-51044207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:1-317
               
               
               Cow position:chr11:58588391-58588073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 92

               
               
               Conread position:1-318
               
               
               Cow position:chr11:18588539-18588852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-318
               
               
               Cow position:chr11:19487434-19487747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:1-318
               
               
               Cow position:chr11:34616306-34615997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:1-318
               
               
               Cow position:chr11:43524655-43524351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-318
               
               
               Cow position:chr11:63847893-63847580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:1-320
               
               
               Cow position:chr11:29916588-29916263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):9, 183

               
               
               Conread position:1-332
               
               
               Cow position:chr11:41811868-41812197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:1-335
               
               
               Cow position:chr11:8496079-8495749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:1-415
               
               
               Cow position:chr11:45282975-45282576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:2-293
               
               
               Cow position:chr11:2084187-2083901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):135, 86

               
               
               Conread position:2-318
               
               
               Cow position:chr11:11752473-11752790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):137, 77

               
               
               Conread position:2-318
               
               
               Cow position:chr11:63519045-63518743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):137, 77

               
               
               Conread position:3-232
               
               
               Cow position:chr11:71341422-71341632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):136, 80

               
               
               Conread position:3-317
               
               
               Cow position:chr11:65988267-65987960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:3-318
               
               
               Cow position:chr11:12949904-12950213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:3-318
               
               
               Cow position:chr11:16000968-16000657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):136, 41

               
               
               Conread position:3-318
               
               
               Cow position:chr11:56821200-56821527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:3-331
               
               
               Cow position:chr11:1849128-1849448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 49

               
               
               Conread position:4-243
               
               
               Cow position:chr11:57170788-57171018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 84

               
               
               Conread position:4-335
               
               
               Cow position:chr11:14649272-14649601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):135, 73

               
               
               Conread position:4-415
               
               
               Cow position:chr11:35580302-35579894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 88

               
               
               Conread position:7-136
               
               
               Cow position:chr11:41313618-41313740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:7-137
               
               
               Cow position:chr11:84890678-84890805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-180
               
               
               Cow position:chr11:31506888-31506717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):116, 83

               
               
               Conread position:7-210
               
               
               Cow position:chr11:6202481-6202288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-222
               
               
               Cow position:chr11:41175910-41176120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:7-224
               
               
               Cow position:chr11:16540901-16540690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-234
               
               
               Cow position:chr11:77683212-77682984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:7-245
               
               
               Cow position:chr11:36238816-36238591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:7-264
               
               
               Cow position:chr11:61858864-61859117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:7-269
               
               
               Cow position:chr11:69810941-69810681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):223, 82

               
               
               Conread position:7-273
               
               
               Cow position:chr11:64044272-64044012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:7-293
               
               
               Cow position:chr11:8147860-8148133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:7-296
               
               
               Cow position:chr11:3726327-3726036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):131, 97

               
               
               Conread position:7-311
               
               
               Cow position:chr11:17192241-17192546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:7-316
               
               
               Cow position:chr11:65409115-65409427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:7-318
               
               
               Cow position:chr11:9088259-9088566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 65

               
               
               Conread position:7-318
               
               
               Cow position:chr11:51144752-51144446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:7-318
               
               
               Cow position:chr11:51687689-51687997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:7-318
               
               
               Cow position:chr11:67745360-67745056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-326
               
               
               Cow position:chr11:18698918-18698595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:7-327
               
               
               Cow position:chr11:25331706-25332009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:7-330
               
               
               Cow position:chr11:56892856-56892536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:7-331
               
               
               Cow position:chr11:28691715-28692036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:7-332
               
               
               Cow position:chr11:34963108-34962777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:7-333
               
               
               Cow position:chr11:53452310-53452632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-343
               
               
               Cow position:chr11:14949370-14949703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):181, 31

               
               
               Conread position:7-344
               
               
               Cow position:chr11:18630497-18630157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:7-346
               
               
               Cow position:chr11:46705502-46705822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:7-347
               
               
               Cow position:chr11:30721137-30720796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):174, 104

               
               
               Conread position:7-352
               
               
               Cow position:chr11:81162394-81162738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 72

               
               
               Conread position:7-354
               
               
               Cow position:chr11:67600823-67600460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-415
               
               
               Cow position:chr11:27681540-27681140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):133, 72

               
               
               Conread position:7-415
               
               
               Cow position:chr11:35881949-35881546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:7-415
               
               
               Cow position:chr11:42232645-42232252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:7-415
               
               
               Cow position:chr11:43594034-43593632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:8-240
               
               
               Cow position:chr11:65607651-65607879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:8-311
               
               
               Cow position:chr11:19238122-19238421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:8-318
               
               
               Cow position:chr11:56518272-56518584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:8-415
               
               
               Cow position:chr11:23251556-23251964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:9-142
               
               
               Cow position:chr11:32398673-32398546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-178
               
               
               Cow position:chr11:33345482-33345317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:9-179
               
               
               Cow position:chr11:47837356-47837186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):115, 45

               
               
               Conread position:9-185
               
               
               Cow position:chr11:56734666-56734496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:9-186
               
               
               Cow position:chr11:30787260-30787083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:9-186
               
               
               Cow position:chr11:70756514-70756348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-190
               
               
               Cow position:chr11:48659971-48659793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-190
               
               
               Cow position:chr11:52690484-52690661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:9-190
               
               
               Cow position:chr11:70206357-70206184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-200
               
               
               Cow position:chr11:67246822-67246644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-201
               
               
               Cow position:chr11:4652936-4653126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):150, 78

               
               
               Conread position:9-201
               
               
               Cow position:chr11:6633747-6633562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-204
               
               
               Cow position:chr11:32254180-32254371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:9-204
               
               
               Cow position:chr11:35775374-35775186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:9-205
               
               
               Cow position:chr11:28993701-28993885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-205
               
               
               Cow position:chr11:70278076-70278262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-209
               
               
               Cow position:chr11:21852265-21852461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:9-214
               
               
               Cow position:chr11:51729323-51729126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-219
               
               
               Cow position:chr11:8544981-8545180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-221
               
               
               Cow position:chr11:75874718-75874921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-222
               
               
               Cow position:chr11:16907014-16907213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:9-230
               
               
               Cow position:chr11:34646626-34646413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:9-231
               
               
               Cow position:chr11:47004385-47004171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-231
               
               
               Cow position:chr11:67136394-67136619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-232
               
               
               Cow position:chr11:83687397-83687608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):170, 84

               
               
               Conread position:9-233
               
               
               Cow position:chr11:9270689-9270909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-235
               
               
               Cow position:chr11:61958707-61958930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-236
               
               
               Cow position:chr11:21438245-21438031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-240
               
               
               Cow position:chr11:13592772-13592548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-240
               
               
               Cow position:chr11:19591958-19592183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 54

               
               
               Conread position:9-240
               
               
               Cow position:chr11:20684535-20684765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-240
               
               
               Cow position:chr11:27932312-27932080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:9-240
               
               
               Cow position:chr11:37804517-37804743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-240
               
               
               Cow position:chr11:38670718-38670494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-240
               
               
               Cow position:chr11:72375646-72375874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-241
               
               
               Cow position:chr11:60143265-60143488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 7

               
               
               Conread position:9-243
               
               
               Cow position:chr11:30955037-30954807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-245
               
               
               Cow position:chr11:27913321-27913080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 144

               
               
               Conread position:9-245
               
               
               Cow position:chr11:49231910-49231684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-245
               
               
               Cow position:chr11:63434021-63434248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-245
               
               
               Cow position:chr11:71492825-71493050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-246
               
               
               Cow position:chr11:48041996-48042234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:9-247
               
               
               Cow position:chr11:63909630-63909853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-257
               
               
               Cow position:chr11:36286732-36286488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-259
               
               
               Cow position:chr11:4207348-4207100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):233, 78

               
               
               Conread position:9-261
               
               
               Cow position:chr11:2811693-2811938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-261
               
               
               Cow position:chr11:38874365-38874617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:9-262
               
               
               Cow position:chr11:36114193-36113942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-263
               
               
               Cow position:chr11:11558208-11557952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:9-263
               
               
               Cow position:chr11:52983712-52983474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-264
               
               
               Cow position:chr11:16232900-16233148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-268
               
               
               Cow position:chr11:81406132-81406379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-269
               
               
               Cow position:chr11:41215769-41215526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-279
               
               
               Cow position:chr11:36112456-36112185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:9-279
               
               
               Cow position:chr11:62620413-62620152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-280
               
               
               Cow position:chr11:32436371-32436095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-280
               
               
               Cow position:chr11:42043959-42044224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):225, 26

               
               
               Conread position:9-282
               
               
               Cow position:chr11:34121235-34120962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):219, 82

               
               
               Conread position:9-282
               
               
               Cow position:chr11:48544474-48544207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:9-288
               
               
               Cow position:chr11:26144059-26144326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:9-289
               
               
               Cow position:chr11:82940588-82940860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-293
               
               
               Cow position:chr11:2917549-2917826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-293
               
               
               Cow position:chr11:81281994-81281698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:9-296
               
               
               Cow position:chr11:4663010-4663289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-296
               
               
               Cow position:chr11:13043109-13043391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-296
               
               
               Cow position:chr11:16342192-16342491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-296
               
               
               Cow position:chr11:35153787-35154077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:9-296
               
               
               Cow position:chr11:64905035-64904746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:9-296
               
               
               Cow position:chr11:87155556-87155266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:9-300
               
               
               Cow position:chr11:66188280-66188575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-303
               
               
               Cow position:chr11:33311010-33310714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:9-308
               
               
               Cow position:chr11:30597030-30596735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 98

               
               
               Conread position:9-309
               
               
               Cow position:chr11:14094383-14094685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:9-309
               
               
               Cow position:chr11:70836339-70836630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):206, 84

               
               
               Conread position:9-311
               
               
               Cow position:chr11:27746960-27746653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:9-311
               
               
               Cow position:chr11:39499393-39499112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:9-311
               
               
               Cow position:chr11:63482393-63482690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-312
               
               
               Cow position:chr11:47545168-47544862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-314
               
               
               Cow position:chr11:35347716-35348025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-314
               
               
               Cow position:chr11:45872274-45872584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:9-315
               
               
               Cow position:chr11:34032166-34032464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-316
               
               
               Cow position:chr11:45898013-45898325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:9-316
               
               
               Cow position:chr11:46747824-46748138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):132, 92

               
               
               Conread position:9-316
               
               
               Cow position:chr11:65159416-65159715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 59

               
               
               Conread position:9-317
               
               
               Cow position:chr11:19247163-19247466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:9-317
               
               
               Cow position:chr11:32378224-32377917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-317
               
               
               Cow position:chr11:38236288-38235973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:9-317
               
               
               Cow position:chr11:44222922-44222630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):272, 36

               
               
               Conread position:9-317
               
               
               Cow position:chr11:80787870-80788181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):135, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr11:4674409-4674722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr11:6233843-6234150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr11:8339369-8339676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr11:15504149-15503829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr11:17227608-17227911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr11:17278639-17278933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):183, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr11:17831185-17831499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr11:25387105-25386799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:9-318
               
               
               Cow position:chr11:26483748-26483448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr11:27386302-27386611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr11:30120625-30120934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr11:30476031-30475728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr11:33341108-33341417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr11:36647380-36647089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):222, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr11:41272174-41271866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-318
               
               
               Cow position:chr11:45631729-45632036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr11:52380835-52381142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):134, 87

               
               
               Conread position:9-318
               
               
               Cow position:chr11:53778653-53778341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr11:55744504-55744202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr11:61454480-61454806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:9-318
               
               
               Cow position:chr11:64638489-64638795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-318
               
               
               Cow position:chr11:66041315-66041002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:9-318
               
               
               Cow position:chr11:70483815-70484133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):94, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr11:71868566-71868875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr11:76369486-76369793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):131, 91

               
               
               Conread position:9-318
               
               
               Cow position:chr11:79728631-79728945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr11:83230364-83230656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):228, 40

               
               
               Conread position:9-318
               
               
               Cow position:chr11:84385602-84385915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-325
               
               
               Cow position:chr11:41986009-41986322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-326
               
               
               Cow position:chr11:18572837-18572524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:9-326
               
               
               Cow position:chr11:42016603-42016918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:9-326
               
               
               Cow position:chr11:54334365-54334055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-327
               
               
               Cow position:chr11:50951594-50951270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-328
               
               
               Cow position:chr11:22977837-22978138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:9-328
               
               
               Cow position:chr11:23232478-23232796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:9-328
               
               
               Cow position:chr11:55761905-55761598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-330
               
               
               Cow position:chr11:20602264-20601956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:9-330
               
               
               Cow position:chr11:29946877-29947210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 191

               
               
               Conread position:9-330
               
               
               Cow position:chr11:70273343-70273018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-331
               
               
               Cow position:chr11:36981600-36981283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):177, 77

               
               
               Conread position:9-331
               
               
               Cow position:chr11:40258375-40258682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-331
               
               
               Cow position:chr11:48272237-48271911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:9-331
               
               
               Cow position:chr11:65431091-65430780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 54

               
               
               Conread position:9-331
               
               
               Cow position:chr11:71168553-71168862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-332
               
               
               Cow position:chr11:41214-40896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):224, 46

               
               
               Conread position:9-332
               
               
               Cow position:chr11:439626-439944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr11:2788430-2788094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr11:8840711-8841026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 29

               
               
               Conread position:9-332
               
               
               Cow position:chr11:28644124-28643796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):131, 83

               
               
               Conread position:9-332
               
               
               Cow position:chr11:33753872-33754184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-332
               
               
               Cow position:chr11:38639148-38638837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-332
               
               
               Cow position:chr11:40459144-40458835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr11:40467089-40467409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-332
               
               
               Cow position:chr11:40792668-40792986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:9-332
               
               
               Cow position:chr11:44636717-44637046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr11:83357431-83357107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:9-333
               
               
               Cow position:chr11:1380712-1380408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:9-333
               
               
               Cow position:chr11:53147500-53147826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-333
               
               
               Cow position:chr11:61137138-61137484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):84, 246

               
               
               Conread position:9-334
               
               
               Cow position:chr11:67804786-67804465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-334
               
               
               Cow position:chr11:77745215-77745541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-335
               
               
               Cow position:chr11:32595494-32595178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-335
               
               
               Cow position:chr11:33414273-33413945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:9-335
               
               
               Cow position:chr11:52297184-52297512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:9-335
               
               
               Cow position:chr11:73512406-73512708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-336
               
               
               Cow position:chr11:49934694-49935033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-338
               
               
               Cow position:chr11:18371402-18371731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):167, 102

               
               
               Conread position:9-344
               
               
               Cow position:chr11:4436356-4436035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-349
               
               
               Cow position:chr11:11125700-11125357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-350
               
               
               Cow position:chr11:21844100-21844436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-357
               
               
               Cow position:chr11:9221695-9222036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-360
               
               
               Cow position:chr11:10620291-10620639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:9-362
               
               
               Cow position:chr11:42002911-42003270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:9-367
               
               
               Cow position:chr11:65826714-65827052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-368
               
               
               Cow position:chr11:20491606-20491252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-368
               
               
               Cow position:chr11:56654592-56654227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 103

               
               
               Conread position:9-414
               
               
               Cow position:chr11:16910322-16910728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:9-414
               
               
               Cow position:chr11:42359151-42358765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):283, 91

               
               
               Conread position:9-414
               
               
               Cow position:chr11:67747321-67746918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr11:5031739-5032137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-415
               
               
               Cow position:chr11:17889694-17890082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr11:22931934-22932336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 139

               
               
               Conread position:9-415
               
               
               Cow position:chr11:23138018-23138432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-415
               
               
               Cow position:chr11:30708543-30708132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-415
               
               
               Cow position:chr11:31352515-31352931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):85, 314

               
               
               Conread position:9-415
               
               
               Cow position:chr11:34113302-34112903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr11:43430420-43430818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr11:48672749-48672348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-415
               
               
               Cow position:chr11:49152985-49152580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-415
               
               
               Cow position:chr11:77705791-77705404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-416
               
               
               Cow position:chr11:43898175-43897774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:9-416
               
               
               Cow position:chr11:44234392-44233996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:9-422
               
               
               Cow position:chr11:30192215-30191796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):102, 45

               
               
               Conread position:9-432
               
               
               Cow position:chr11:3393172-3393587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):219, 84

               
               
               Conread position:10-153
               
               
               Cow position:chr11:12368736-12368595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:10-275
               
               
               Cow position:chr11:18591398-18591662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-289
               
               
               Cow position:chr11:57724789-57725071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 68

               
               
               Conread position:10-293
               
               
               Cow position:chr11:30638914-30639195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:10-304
               
               
               Cow position:chr11:77128696-77128411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 137

               
               
               Conread position:10-311
               
               
               Cow position:chr11:16261989-16262296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:10-317
               
               
               Cow position:chr11:81300585-81300883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):129, 62

               
               
               Conread position:10-318
               
               
               Cow position:chr11:21798965-21798680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:10-318
               
               
               Cow position:chr11:26535822-26535504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:10-318
               
               
               Cow position:chr11:62155674-62155359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 293

               
               
               Conread position:10-324
               
               
               Cow position:chr11:31413494-31413173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:10-326
               
               
               Cow position:chr11:76606708-76606410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):229, 74

               
               
               Conread position:10-328
               
               
               Cow position:chr11:61203201-61202881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:10-368
               
               
               Cow position:chr11:40478817-40479177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:11-159
               
               
               Cow position:chr11:75965617-75965757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-193
               
               
               Cow position:chr11:48429145-48428964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:11-204
               
               
               Cow position:chr11:48306312-48306496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-205
               
               
               Cow position:chr11:63435555-63435364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 21

               
               
               Conread position:11-212
               
               
               Cow position:chr11:17493513-17493318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:11-226
               
               
               Cow position:chr11:71009163-71008961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-227
               
               
               Cow position:chr11:30830579-30830791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-232
               
               
               Cow position:chr11:15772679-15772900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:11-232
               
               
               Cow position:chr11:69402213-69402428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-235
               
               
               Cow position:chr11:1157678-1157461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:11-240
               
               
               Cow position:chr11:27765188-27764967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:11-264
               
               
               Cow position:chr11:23586673-23586418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):223, 77

               
               
               Conread position:11-277
               
               
               Cow position:chr11:2092369-2092110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):218, 47

               
               
               Conread position:11-277
               
               
               Cow position:chr11:71501097-71501353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-277
               
               
               Cow position:chr11:77546450-77546188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:11-290
               
               
               Cow position:chr11:30925191-30924909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:11-290
               
               
               Cow position:chr11:77319449-77319180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):129, 76

               
               
               Conread position:11-291
               
               
               Cow position:chr11:50072972-50072717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-308
               
               
               Cow position:chr11:36940561-36940862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:11-309
               
               
               Cow position:chr11:30764525-30764217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 103

               
               
               Conread position:11-315
               
               
               Cow position:chr11:62573974-62574267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-317
               
               
               Cow position:chr11:13061201-13061494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-317
               
               
               Cow position:chr11:24937700-24937392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr11:3780383-3780696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):128, 103

               
               
               Conread position:11-318
               
               
               Cow position:chr11:15285580-15285889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:11-318
               
               
               Cow position:chr11:33349666-33349973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr11:36986984-36986690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):178, 61

               
               
               Conread position:11-318
               
               
               Cow position:chr11:65444808-65445102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:11-324
               
               
               Cow position:chr11:53313537-53313846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:11-326
               
               
               Cow position:chr11:50152779-50153097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):126, 71

               
               
               Conread position:11-328
               
               
               Cow position:chr11:61427629-61427333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:11-331
               
               
               Cow position:chr11:3833328-3833632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:11-332
               
               
               Cow position:chr11:4323393-4323081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-332
               
               
               Cow position:chr11:44032046-44031714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:11-332
               
               
               Cow position:chr11:77758726-77759045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:11-334
               
               
               Cow position:chr11:30934451-30934138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:11-338
               
               
               Cow position:chr11:13500050-13499723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):125, 44

               
               
               Conread position:11-341
               
               
               Cow position:chr11:55333944-55333615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:11-342
               
               
               Cow position:chr11:14308674-14308343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-344
               
               
               Cow position:chr11:43646377-43646716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:11-358
               
               
               Cow position:chr11:8828597-8828940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-365
               
               
               Cow position:chr11:48474738-48474390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-368
               
               
               Cow position:chr11:42519769-42519421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:11-415
               
               
               Cow position:chr11:4732377-4731978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 92

               
               
               Conread position:11-415
               
               
               Cow position:chr11:10076803-10076414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:11-415
               
               
               Cow position:chr11:26067148-26067540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:11-415
               
               
               Cow position:chr11:30165544-30165140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 51

               
               
               Conread position:11-415
               
               
               Cow position:chr11:76114681-76114292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):238, 76

               
               
               Conread position:12-209
               
               
               Cow position:chr11:21427959-21428151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:13-289
               
               
               Cow position:chr11:46413606-46413334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:13-296
               
               
               Cow position:chr11:33293746-33294041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:13-318
               
               
               Cow position:chr11:6154441-6154141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:14-187
               
               
               Cow position:chr11:68913172-68913007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-231
               
               
               Cow position:chr11:40573303-40573513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:14-232
               
               
               Cow position:chr11:70086366-70086144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:14-279
               
               
               Cow position:chr11:65762559-65762829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:14-308
               
               
               Cow position:chr11:83397937-83397643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-317
               
               
               Cow position:chr11:27939516-27939216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:14-318
               
               
               Cow position:chr11:7924557-7924860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):167, 77

               
               
               Conread position:14-318
               
               
               Cow position:chr11:10095375-10095071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:14-318
               
               
               Cow position:chr11:18066793-18067114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:14-318
               
               
               Cow position:chr11:30355090-30354796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:14-318
               
               
               Cow position:chr11:70382659-70382966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:14-328
               
               
               Cow position:chr11:70609830-70609506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:14-329
               
               
               Cow position:chr11:21549512-21549213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):167, 65

               
               
               Conread position:14-332
               
               
               Cow position:chr11:8988198-8988515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-332
               
               
               Cow position:chr11:63065684-63065368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):125, 36

               
               
               Conread position:14-332
               
               
               Cow position:chr11:85723729-85723416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-333
               
               
               Cow position:chr11:3720285-3719965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:14-351
               
               
               Cow position:chr11:18210316-18210654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:14-415
               
               
               Cow position:chr11:30879699-30879317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):169, 48

               
               
               Conread position:14-415
               
               
               Cow position:chr11:33527083-33526707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):334, 79

               
               
               Conread position:14-415
               
               
               Cow position:chr11:69119325-69118939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):216, 65

               
               
               Conread position:15-276
               
               
               Cow position:chr11:2509282-2509525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:16-279
               
               
               Cow position:chr11:38845232-38845488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-315
               
               
               Cow position:chr11:24585211-24584911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:16-331
               
               
               Cow position:chr11:37347508-37347191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:16-332
               
               
               Cow position:chr11:62019554-62019884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:19-291
               
               
               Cow position:chr11:26117695-26117961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:19-324
               
               
               Cow position:chr11:47125576-47125288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):170, 82

               
               
               Conread position:19-333
               
               
               Cow position:chr11:70838257-70838589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:19-422
               
               
               Cow position:chr11:81174911-81174523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:20-186
               
               
               Cow position:chr11:71807545-71807704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:20-240
               
               
               Cow position:chr11:9463862-9463643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:20-264
               
               
               Cow position:chr11:82107869-82108105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:20-305
               
               
               Cow position:chr11:56728975-56728688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-307
               
               
               Cow position:chr11:171676-171957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-318
               
               
               Cow position:chr11:377616-377922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:20-318
               
               
               Cow position:chr11:86925915-86926189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):163, 10

               
               
               Conread position:21-296
               
               
               Cow position:chr11:42792948-42793225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr11:15632529-15632827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr11:20761872-20761574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-325
               
               
               Cow position:chr11:45646568-45646869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 74

               
               
               Conread position:21-325
               
               
               Cow position:chr11:46746656-46746357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:21-327
               
               
               Cow position:chr11:83043338-83043641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-331
               
               
               Cow position:chr11:60301936-60302242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):221, 72

               
               
               Conread position:21-332
               
               
               Cow position:chr11:70459588-70459289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:21-334
               
               
               Cow position:chr11:1362443-1362769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:21-415
               
               
               Cow position:chr11:2309898-2309512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:21-415
               
               
               Cow position:chr11:23128515-23128912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:22-225
               
               
               Cow position:chr11:53512109-53511908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:22-266
               
               
               Cow position:chr11:23271980-23272217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:22-272
               
               
               Cow position:chr11:7458258-7458508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:22-307
               
               
               Cow position:chr11:40485911-40486194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:22-318
               
               
               Cow position:chr11:8827803-8827508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:23-326
               
               
               Cow position:chr11:67931462-67931774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):116, 94

               
               
               Conread position:23-330
               
               
               Cow position:chr11:39115518-39115210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:23-415
               
               
               Cow position:chr11:68206822-68207208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):207, 44

               
               
               Conread position:25-316
               
               
               Cow position:chr11:38810328-38810620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:25-332
               
               
               Cow position:chr11:44642264-44642571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 52

               
               
               Conread position:25-368
               
               
               Cow position:chr11:37160810-37160469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:26-307
               
               
               Cow position:chr11:24967472-24967201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-310
               
               
               Cow position:chr11:22499344-22499614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):202, 65

               
               
               Conread position:26-316
               
               
               Cow position:chr11:73924543-73924828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-318
               
               
               Cow position:chr11:12111433-12111739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):24, 30

               
               
               Conread position:26-318
               
               
               Cow position:chr11:83196517-83196228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:26-329
               
               
               Cow position:chr11:36658800-36659097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-332
               
               
               Cow position:chr11:21894138-21894439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:26-332
               
               
               Cow position:chr11:80923301-80923621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:26-403
               
               
               Cow position:chr11:16251224-16251602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:27-331
               
               
               Cow position:chr11:62150872-62151166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):191, 52

               
               
               Conread position:29-316
               
               
               Cow position:chr11:77238147-77237852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 269

               
               
               Conread position:29-330
               
               
               Cow position:chr11:58990519-58990227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 58

               
               
               Conread position:30-191
               
               
               Cow position:chr11:42066875-42066721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:30-201
               
               
               Cow position:chr11:51626980-51626813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-210
               
               
               Cow position:chr11:32693463-32693630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):156, 37

               
               
               Conread position:30-210
               
               
               Cow position:chr11:63499308-63499482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:30-221
               
               
               Cow position:chr11:41134050-41134235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-257
               
               
               Cow position:chr11:33468726-33468508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:30-277
               
               
               Cow position:chr11:25620381-25620626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:30-293
               
               
               Cow position:chr11:2907507-2907772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:30-307
               
               
               Cow position:chr11:78381045-78381307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-317
               
               
               Cow position:chr11:53773697-53773402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-318
               
               
               Cow position:chr11:5226716-5227010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:30-318
               
               
               Cow position:chr11:48697464-48697176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:30-318
               
               
               Cow position:chr11:48932571-48932854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr11:59872946-59872655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-333
               
               
               Cow position:chr11:59902906-59902604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-336
               
               
               Cow position:chr11:80530382-80530081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-337
               
               
               Cow position:chr11:38194173-38193861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:30-341
               
               
               Cow position:chr11:7590208-7589896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:30-342
               
               
               Cow position:chr11:62880610-62880920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):150, 58

               
               
               Conread position:30-415
               
               
               Cow position:chr11:17860140-17860514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-415
               
               
               Cow position:chr11:62979506-62979117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-415
               
               
               Cow position:chr11:64029247-64029616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):160, 58

               
               
               Conread position:31-317
               
               
               Cow position:chr11:17968568-17968846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:31-318
               
               
               Cow position:chr11:18243926-18244213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:31-318
               
               
               Cow position:chr11:49149052-49148778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:31-415
               
               
               Cow position:chr11:81066566-81066942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:32-198
               
               
               Cow position:chr11:49057417-49057256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:32-317
               
               
               Cow position:chr11:32750128-32749837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 54

               
               
               Conread position:32-415
               
               
               Cow position:chr11:7395151-7394796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):154, 53

               
               
               Conread position:33-317
               
               
               Cow position:chr11:34829766-34830050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:33-410
               
               
               Cow position:chr11:75480007-75480390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):81, 59

               
               
               Conread position:35-332
               
               
               Cow position:chr11:13191236-13190934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):98, 55

               
               
               Conread position:35-340
               
               
               Cow position:chr11:7333709-7334015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:35-415
               
               
               Cow position:chr11:18086329-18086698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):146, 67

               
               
               Conread position:37-311
               
               
               Cow position:chr11:59155870-59156135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:37-332
               
               
               Cow position:chr11:18484160-18484445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:38-201
               
               
               Cow position:chr11:65435862-65435704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:38-235
               
               
               Cow position:chr11:36672036-36672231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-260
               
               
               Cow position:chr11:32610006-32609794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-318
               
               
               Cow position:chr11:32072160-32071878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:38-318
               
               
               Cow position:chr11:53130821-53130541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:39-336
               
               
               Cow position:chr11:68909839-68910138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 58

               
               
               Conread position:40-204
               
               
               Cow position:chr11:37546511-37546666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:40-318
               
               
               Cow position:chr11:17112624-17112898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:40-374
               
               
               Cow position:chr11:8247207-8246860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:41-317
               
               
               Cow position:chr11:58102769-58103045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:41-414
               
               
               Cow position:chr11:30110967-30110594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:43-230
               
               
               Cow position:chr11:15525970-15525775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:43-254
               
               
               Cow position:chr11:18399325-18399533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:43-279
               
               
               Cow position:chr11:2514591-2514825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:43-300
               
               
               Cow position:chr11:5677726-5677465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:43-304
               
               
               Cow position:chr11:2050582-2050322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):142, 34

               
               
               Conread position:43-354
               
               
               Cow position:chr11:46580360-46580059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:44-333
               
               
               Cow position:chr11:85764937-85764664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:46-311
               
               
               Cow position:chr11:11460495-11460233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 5

               
               
               Conread position:47-233
               
               
               Cow position:chr11:47109972-47109788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:47-291
               
               
               Cow position:chr11:62808653-62808893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:47-306
               
               
               Cow position:chr11:63516826-63516563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:47-309
               
               
               Cow position:chr11:62045395-62045136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:47-317
               
               
               Cow position:chr11:48901084-48901348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:47-318
               
               
               Cow position:chr11:8105784-8105511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:47-318
               
               
               Cow position:chr11:41983458-41983718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:47-318
               
               
               Cow position:chr11:47165142-47165408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:47-318
               
               
               Cow position:chr11:62016282-62016541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:47-328
               
               
               Cow position:chr11:77241369-77241099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-332
               
               
               Cow position:chr11:31901045-31900763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:47-332
               
               
               Cow position:chr11:62965549-62965839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:47-415
               
               
               Cow position:chr11:47586351-47586707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:49-264
               
               
               Cow position:chr11:21830351-21830570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:50-264
               
               
               Cow position:chr11:17574337-17574538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:52-327
               
               
               Cow position:chr11:81614646-81614912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:52-330
               
               
               Cow position:chr11:58460105-58459847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:52-332
               
               
               Cow position:chr11:1485365-1485646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:52-332
               
               
               Cow position:chr11:83066491-83066210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:55-203
               
               
               Cow position:chr11:83926040-83925895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-245
               
               
               Cow position:chr11:79666787-79666983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:55-317
               
               
               Cow position:chr11:60822739-60822997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-318
               
               
               Cow position:chr11:12555413-12555689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:55-318
               
               
               Cow position:chr11:15124986-15125251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:55-328
               
               
               Cow position:chr11:43360786-43361082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:55-332
               
               
               Cow position:chr11:65857851-65857572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:56-415
               
               
               Cow position:chr11:81605619-81605277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:57-232
               
               
               Cow position:chr11:70600826-70601001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:57-318
               
               
               Cow position:chr11:71455781-71455516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:58-332
               
               
               Cow position:chr11:25320044-25319765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:61-415
               
               
               Cow position:chr11:64932308-64932658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 141

               
               
               Conread position:62-258
               
               
               Cow position:chr11:61298996-61299189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:62-315
               
               
               Cow position:chr11:9837114-9837366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:62-325
               
               
               Cow position:chr11:75748418-75748157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:62-338
               
               
               Cow position:chr11:10877230-10876944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:62-340
               
               
               Cow position:chr11:38794534-38794262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:62-414
               
               
               Cow position:chr11:49106041-49105695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:63-332
               
               
               Cow position:chr11:71846363-71846634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:63-415
               
               
               Cow position:chr11:21819458-21819812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:64-317
               
               
               Cow position:chr11:8232585-8232834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:64-317
               
               
               Cow position:chr11:43914197-43913952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:64-416
               
               
               Cow position:chr11:10876011-10875661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:70-316
               
               
               Cow position:chr11:36496825-36496584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:71-334
               
               
               Cow position:chr11:35149144-35148881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:73-296
               
               
               Cow position:chr11:63156931-63157162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:79-425
               
               
               Cow position:chr11:73478593-73478253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 221

               
               
               Conread position:80-318
               
               
               Cow position:chr11:61846027-61846277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:80-324
               
               
               Cow position:chr11:74929757-74929503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 229

               
               
               Conread position:80-346
               
               
               Cow position:chr11:67940670-67940407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:80-412
               
               
               Cow position:chr11:14941624-14941957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:81-318
               
               
               Cow position:chr11:47193491-47193252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:82-318
               
               
               Cow position:chr11:2281323-2281558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:82-331
               
               
               Cow position:chr11:34121734-34121472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:82-333
               
               
               Cow position:chr11:56796771-56797025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):5, 26

               
               
               Conread position:83-318
               
               
               Cow position:chr11:64334819-64334586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:83-332
               
               
               Cow position:chr11:36182657-36182403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:84-296
               
               
               Cow position:chr11:20238642-20238423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:84-296
               
               
               Cow position:chr11:40818669-40818888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-317
               
               
               Cow position:chr11:986901-986669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:84-327
               
               
               Cow position:chr11:71309559-71309809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:84-332
               
               
               Cow position:chr11:62490402-62490148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr11:62749790-62750035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):146, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr11:74316681-74316421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:84-373
               
               
               Cow position:chr11:1668647-1668348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:85-264
               
               
               Cow position:chr11:17661059-17660877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:86-255
               
               
               Cow position:chr11:47850990-47850823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:87-279
               
               
               Cow position:chr11:11469674-11469866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):160, 6

               
               
               Conread position:87-304
               
               
               Cow position:chr11:17321628-17321400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:87-348
               
               
               Cow position:chr11:25165407-25165144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:88-222
               
               
               Cow position:chr11:29266506-29266370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-318
               
               
               Cow position:chr11:18509051-18509280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:88-334
               
               
               Cow position:chr11:19890826-19890597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:88-368
               
               
               Cow position:chr11:50778338-50778048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:89-342
               
               
               Cow position:chr11:53142256-53142509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:91-292
               
               
               Cow position:chr11:41438258-41438470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:91-318
               
               
               Cow position:chr11:10302227-10302460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 168

               
               
               Conread position:92-231
               
               
               Cow position:chr11:48383489-48383350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-245
               
               
               Cow position:chr11:33364305-33364152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:92-293
               
               
               Cow position:chr11:36848887-36848686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:92-311
               
               
               Cow position:chr11:57061838-57061612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:92-317
               
               
               Cow position:chr11:35684535-35684769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-318
               
               
               Cow position:chr11:27462431-27462656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:93-318
               
               
               Cow position:chr11:53719901-53719674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:93-415
               
               
               Cow position:chr11:45277187-45277515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:94-235
               
               
               Cow position:chr11:36301117-36301261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:94-245
               
               
               Cow position:chr11:36766619-36766472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:94-332
               
               
               Cow position:chr11:952226-951983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:96-318
               
               
               Cow position:chr11:41577058-41577276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:96-318
               
               
               Cow position:chr11:68570707-68570943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:96-331
               
               
               Cow position:chr11:50197472-50197729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:97-335
               
               
               Cow position:chr11:19788089-19787857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:97-364
               
               
               Cow position:chr11:80011883-80012149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:97-394
               
               
               Cow position:chr11:35276257-35275956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:98-251
               
               
               Cow position:chr11:29786650-29786800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:100-318
               
               
               Cow position:chr11:50112140-50111920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:100-318
               
               
               Cow position:chr11:60470223-60470451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:101-318
               
               
               Cow position:chr11:67951012-67951232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:101-318
               
               
               Cow position:chr11:75355560-75355338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:101-325
               
               
               Cow position:chr11:77207998-77207770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:101-375
               
               
               Cow position:chr11:57111356-57111640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:101-396
               
               
               Cow position:chr11:58614614-58614312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 204

               
               
               Conread position:101-415
               
               
               Cow position:chr11:1485916-1486230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:103-318
               
               
               Cow position:chr11:70745579-70745807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:103-330
               
               
               Cow position:chr11:34467536-34467315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:104-316
               
               
               Cow position:chr11:65495377-65495597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:104-333
               
               
               Cow position:chr11:58400211-58399983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:105-268
               
               
               Cow position:chr11:37100408-37100581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:105-318
               
               
               Cow position:chr11:7247935-7248148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:105-318
               
               
               Cow position:chr11:44819051-44818825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:106-290
               
               
               Cow position:chr11:47899226-47899033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-315
               
               
               Cow position:chr11:84924148-84924364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:106-318
               
               
               Cow position:chr11:41598778-41598999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-348
               
               
               Cow position:chr11:60512733-60512484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:106-415
               
               
               Cow position:chr11:78820044-78819747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:107-318
               
               
               Cow position:chr11:10992227-10992008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-346
               
               
               Cow position:chr11:38009869-38010111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:110-308
               
               
               Cow position:chr11:80825106-80824907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:110-335
               
               
               Cow position:chr11:35363441-35363207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):29, 198

               
               
               Conread position:111-300
               
               
               Cow position:chr11:27722304-27722108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:112-318
               
               
               Cow position:chr11:84890809-84891023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 195

               
               
               Conread position:113-350
               
               
               Cow position:chr11:70163844-70163596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:114-318
               
               
               Cow position:chr11:55348206-55347991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:114-332
               
               
               Cow position:chr11:54856566-54856349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:116-245
               
               
               Cow position:chr11:27911028-27910898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:117-311
               
               
               Cow position:chr11:25337012-25336811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:117-332
               
               
               Cow position:chr11:34413034-34412811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-332
               
               
               Cow position:chr11:35238770-35238543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:118-332
               
               
               Cow position:chr11:7315192-7315412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:124-415
               
               
               Cow position:chr11:31885447-31885152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:127-318
               
               
               Cow position:chr11:48232659-48232471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 88

               
               
               Conread position:127-334
               
               
               Cow position:chr11:79019597-79019803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:127-342
               
               
               Cow position:chr11:73473844-73474069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 164

               
               
               Conread position:127-352
               
               
               Cow position:chr11:5221499-5221722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:128-318
               
               
               Cow position:chr11:37118414-37118213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:128-326
               
               
               Cow position:chr11:64090159-64090366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:128-330
               
               
               Cow position:chr11:24601898-24601683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:129-415
               
               
               Cow position:chr11:3303755-3303476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:130-318
               
               
               Cow position:chr11:84775028-84774846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:130-329
               
               
               Cow position:chr11:82232338-82232139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 169

               
               
               Conread position:130-334
               
               
               Cow position:chr11:85189459-85189672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:131-332
               
               
               Cow position:chr11:46451534-46451333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:135-415
               
               
               Cow position:chr11:40250685-40250961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:136-310
               
               
               Cow position:chr11:51756234-51756053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 167

               
               
               Conread position:138-278
               
               
               Cow position:chr11:21728355-21728499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:138-296
               
               
               Cow position:chr11:35874078-35874234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:149-329
               
               
               Cow position:chr11:2344176-2343997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:150-318
               
               
               Cow position:chr11:6639412-6639240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 153

               
               
               Conread position:150-318
               
               
               Cow position:chr11:62376534-62376708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:151-326
               
               
               Cow position:chr11:55117383-55117193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:151-333
               
               
               Cow position:chr11:54134349-54134532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:151-415
               
               
               Cow position:chr11:37563364-37563101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:152-344
               
               
               Cow position:chr11:39057534-39057342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:152-357
               
               
               Cow position:chr11:3282951-3282748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:156-358
               
               
               Cow position:chr11:40608823-40609032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:157-415
               
               
               Cow position:chr11:48428978-48428722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):187, 60

               
               
               Conread position:159-342
               
               
               Cow position:chr11:9234523-9234333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 159

               
               
               Conread position:159-347
               
               
               Cow position:chr11:63920396-63920588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:164-334
               
               
               Cow position:chr11:30172262-30172091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):66, 133

               
               
               Conread position:169-351
               
               
               Cow position:chr11:6091776-6091953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:175-312
               
               
               Cow position:chr11:31227866-31227729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-318
               
               
               Cow position:chr11:39034318-39034183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:183-351
               
               
               Cow position:chr11:48982978-48982809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-175
               
               
               Cow position:chr12:7110222-7110056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:1-192
               
               
               Cow position:chr12:15038950-15039137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:1-193
               
               
               Cow position:chr12:41215860-41216046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:1-235
               
               
               Cow position:chr12:32413541-32413307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):5, 106

               
               
               Conread position:1-279
               
               
               Cow position:chr12:38484369-38484650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:1-317
               
               
               Cow position:chr12:9710182-9710494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-318
               
               
               Cow position:chr12:19154588-19154902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:1-318
               
               
               Cow position:chr12:41581136-41580826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:1-326
               
               
               Cow position:chr12:45160493-45160811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-333
               
               
               Cow position:chr12:5801066-5800732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:3-307
               
               
               Cow position:chr12:29969601-29969295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:3-325
               
               
               Cow position:chr12:11836256-11835944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:3-365
               
               
               Cow position:chr12:25619353-25619715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:4-318
               
               
               Cow position:chr12:6241340-6241018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 95

               
               
               Conread position:5-329
               
               
               Cow position:chr12:3955753-3956077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):134, 73

               
               
               Conread position:6-318
               
               
               Cow position:chr12:25561388-25561080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:7-183
               
               
               Cow position:chr12:26217806-26217978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:7-206
               
               
               Cow position:chr12:27365946-27365751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:7-209
               
               
               Cow position:chr12:29921766-29921960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:7-241
               
               
               Cow position:chr12:30210501-30210272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-245
               
               
               Cow position:chr12:29899405-29899646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:7-318
               
               
               Cow position:chr12:19664514-19664806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 71

               
               
               Conread position:7-318
               
               
               Cow position:chr12:27055624-27055317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):156, 31

               
               
               Conread position:7-326
               
               
               Cow position:chr12:1223326-1223641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-326
               
               
               Cow position:chr12:27803032-27803348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 93

               
               
               Conread position:7-361
               
               
               Cow position:chr12:21612121-21611760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:8-325
               
               
               Cow position:chr12:40270071-40270384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:8-330
               
               
               Cow position:chr12:4866834-4866513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:8-333
               
               
               Cow position:chr12:7960564-7960869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:8-415
               
               
               Cow position:chr12:40910272-40910670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 86

               
               
               Conread position:9-153
               
               
               Cow position:chr12:25193066-25192930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-202
               
               
               Cow position:chr12:3623710-3623523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-203
               
               
               Cow position:chr12:4719963-4719773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-208
               
               
               Cow position:chr12:23916858-23916665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-210
               
               
               Cow position:chr12:23855852-23855656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-210
               
               
               Cow position:chr12:38774227-38774419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-211
               
               
               Cow position:chr12:15414851-15415053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:9-212
               
               
               Cow position:chr12:12637167-12637369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-232
               
               
               Cow position:chr12:3906489-3906271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-232
               
               
               Cow position:chr12:33976215-33976002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-235
               
               
               Cow position:chr12:4596480-4596249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:9-235
               
               
               Cow position:chr12:28748957-28748734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-240
               
               
               Cow position:chr12:25452431-25452653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:9-241
               
               
               Cow position:chr12:4768941-4768718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-241
               
               
               Cow position:chr12:18963912-18964138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-245
               
               
               Cow position:chr12:4162347-4162580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-245
               
               
               Cow position:chr12:31948131-31947909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-245
               
               
               Cow position:chr12:33851373-33851146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:9-258
               
               
               Cow position:chr12:25280486-25280721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):237, 78

               
               
               Conread position:9-264
               
               
               Cow position:chr12:23574779-23574533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-264
               
               
               Cow position:chr12:40028738-40028992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-265
               
               
               Cow position:chr12:20071557-20071823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):128, 5

               
               
               Conread position:9-268
               
               
               Cow position:chr12:730920-731176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-268
               
               
               Cow position:chr12:34161429-34161176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-269
               
               
               Cow position:chr12:1889562-1889823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:9-273
               
               
               Cow position:chr12:24211423-24211170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):228, 35

               
               
               Conread position:9-279
               
               
               Cow position:chr12:28213526-28213266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-291
               
               
               Cow position:chr12:46333361-46333098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:9-296
               
               
               Cow position:chr12:39465595-39465309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:9-303
               
               
               Cow position:chr12:30661934-30662226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:9-306
               
               
               Cow position:chr12:24559374-24559074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-307
               
               
               Cow position:chr12:9482289-9482579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:9-307
               
               
               Cow position:chr12:34465988-34466281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 67

               
               
               Conread position:9-314
               
               
               Cow position:chr12:5538949-5539253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:9-314
               
               
               Cow position:chr12:12178939-12178634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-314
               
               
               Cow position:chr12:23154462-23154753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:9-316
               
               
               Cow position:chr12:32715060-32714752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-316
               
               
               Cow position:chr12:42967011-42966712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:9-317
               
               
               Cow position:chr12:15358356-15358038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:9-317
               
               
               Cow position:chr12:21393722-21393408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):156, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr12:33458163-33457859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-317
               
               
               Cow position:chr12:35368658-35368353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr12:2711514-2711201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:9-318
               
               
               Cow position:chr12:3950329-3950642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr12:4371257-4370942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr12:8943208-8943511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 67

               
               
               Conread position:9-318
               
               
               Cow position:chr12:9914805-9914498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr12:19508543-19508863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 94

               
               
               Conread position:9-318
               
               
               Cow position:chr12:22515716-22516027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr12:22882072-22881761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr12:28010893-28011190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-318
               
               
               Cow position:chr12:31198783-31198477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr12:31228588-31228288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-318
               
               
               Cow position:chr12:31532388-31532692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr12:32169556-32169245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr12:33323480-33323789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr12:34007317-34007008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr12:34673324-34673620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr12:36118981-36118680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr12:40807418-40807105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr12:41474105-41473804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr12:42181113-42181432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 193

               
               
               Conread position:9-318
               
               
               Cow position:chr12:47799807-47800104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr12:47804173-47803864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-325
               
               
               Cow position:chr12:5714646-5714331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-326
               
               
               Cow position:chr12:15938249-15938566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-326
               
               
               Cow position:chr12:29483870-29484190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr12:30170685-30170368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:9-326
               
               
               Cow position:chr12:31429555-31429859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-330
               
               
               Cow position:chr12:30596483-30596160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 57

               
               
               Conread position:9-331
               
               
               Cow position:chr12:18420906-18421230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):221, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr12:1773649-1773968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr12:15122342-15122037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:9-332
               
               
               Cow position:chr12:15429580-15429905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):204, 73

               
               
               Conread position:9-332
               
               
               Cow position:chr12:17881877-17881567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr12:18769054-18769381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:9-332
               
               
               Cow position:chr12:20326790-20326466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:9-332
               
               
               Cow position:chr12:29995448-29995767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-332
               
               
               Cow position:chr12:30438253-30437946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr12:30745732-30745408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:9-332
               
               
               Cow position:chr12:35310669-35310978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):225, 29

               
               
               Conread position:9-332
               
               
               Cow position:chr12:39486440-39486125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):221, 82

               
               
               Conread position:9-335
               
               
               Cow position:chr12:7978053-7977739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 24

               
               
               Conread position:9-335
               
               
               Cow position:chr12:11056891-11056568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-335
               
               
               Cow position:chr12:42254683-42254350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-338
               
               
               Cow position:chr12:6210142-6210468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 89

               
               
               Conread position:9-340
               
               
               Cow position:chr12:48415500-48415824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):146, 40

               
               
               Conread position:9-342
               
               
               Cow position:chr12:6720344-6720007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:9-347
               
               
               Cow position:chr12:41159603-41159277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):168, 20

               
               
               Conread position:9-354
               
               
               Cow position:chr12:28582492-28582817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-363
               
               
               Cow position:chr12:21922466-21922099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):125, 44

               
               
               Conread position:9-369
               
               
               Cow position:chr12:30590783-30590433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:9-415
               
               
               Cow position:chr12:17717081-17716699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 25

               
               
               Conread position:9-415
               
               
               Cow position:chr12:30753735-30753346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr12:36313868-36313486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:10-240
               
               
               Cow position:chr12:27037435-27037654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-240
               
               
               Cow position:chr12:37190330-37190112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 95

               
               
               Conread position:10-296
               
               
               Cow position:chr12:12331495-12331770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):152, 52

               
               
               Conread position:10-318
               
               
               Cow position:chr12:6164007-6164320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:10-344
               
               
               Cow position:chr12:6410720-6411045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:11-197
               
               
               Cow position:chr12:15230802-15230981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:11-199
               
               
               Cow position:chr12:18420484-18420302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-205
               
               
               Cow position:chr12:20636138-20636333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:11-229
               
               
               Cow position:chr12:7299446-7299666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:11-266
               
               
               Cow position:chr12:15163153-15162911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-287
               
               
               Cow position:chr12:5940355-5940083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:11-296
               
               
               Cow position:chr12:28559309-28559026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:11-307
               
               
               Cow position:chr12:30919439-30919152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 101

               
               
               Conread position:11-314
               
               
               Cow position:chr12:941654-941345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 93

               
               
               Conread position:11-315
               
               
               Cow position:chr12:44517724-44518023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-317
               
               
               Cow position:chr12:41091547-41091239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:11-318
               
               
               Cow position:chr12:3056147-3055845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 84

               
               
               Conread position:11-318
               
               
               Cow position:chr12:7000589-7000880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr12:18572638-18572347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):177, 41

               
               
               Conread position:11-332
               
               
               Cow position:chr12:18518687-18518366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 143

               
               
               Conread position:11-415
               
               
               Cow position:chr12:794578-794162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:11-415
               
               
               Cow position:chr12:18943644-18944029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:12-328
               
               
               Cow position:chr12:29448659-29448345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:13-222
               
               
               Cow position:chr12:11587786-11587576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:13-245
               
               
               Cow position:chr12:10575617-10575389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:13-293
               
               
               Cow position:chr12:42879706-42879440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:13-415
               
               
               Cow position:chr12:16543569-16543956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 58

               
               
               Conread position:14-192
               
               
               Cow position:chr12:31517160-31517328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:14-261
               
               
               Cow position:chr12:1030990-1030746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:14-282
               
               
               Cow position:chr12:45363372-45363102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):167, 78

               
               
               Conread position:14-293
               
               
               Cow position:chr12:34473610-34473881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:14-304
               
               
               Cow position:chr12:15783932-15783656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 52

               
               
               Conread position:14-308
               
               
               Cow position:chr12:44595799-44596096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 71

               
               
               Conread position:14-314
               
               
               Cow position:chr12:37728155-37727860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:14-314
               
               
               Cow position:chr12:37732769-37733064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:14-314
               
               
               Cow position:chr12:45820355-45820644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:14-318
               
               
               Cow position:chr12:10895542-10895839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):223, 79

               
               
               Conread position:14-318
               
               
               Cow position:chr12:18577850-18577559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):203, 65

               
               
               Conread position:14-318
               
               
               Cow position:chr12:35771010-35771324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:14-327
               
               
               Cow position:chr12:3510572-3510265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:14-333
               
               
               Cow position:chr12:3568952-3568641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 71

               
               
               Conread position:14-333
               
               
               Cow position:chr12:34385500-34385820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:15-311
               
               
               Cow position:chr12:18388279-18388566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:19-315
               
               
               Cow position:chr12:1505027-1504739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:20-231
               
               
               Cow position:chr12:10491277-10491077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:20-240
               
               
               Cow position:chr12:18765968-18766186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:20-264
               
               
               Cow position:chr12:34333115-34332869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:20-304
               
               
               Cow position:chr12:34429151-34429420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 57

               
               
               Conread position:21-269
               
               
               Cow position:chr12:36544637-36544885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:21-287
               
               
               Cow position:chr12:5635449-5635708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:21-318
               
               
               Cow position:chr12:5906060-5905766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr12:46314700-46314986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:21-331
               
               
               Cow position:chr12:17080264-17079954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:21-332
               
               
               Cow position:chr12:9143391-9143087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):209, 57

               
               
               Conread position:21-332
               
               
               Cow position:chr12:44013836-44014145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:21-335
               
               
               Cow position:chr12:19869467-19869163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:21-343
               
               
               Cow position:chr12:17031619-17031305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:22-415
               
               
               Cow position:chr12:27563374-27563757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):114, 74

               
               
               Conread position:23-180
               
               
               Cow position:chr12:21911804-21911653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:23-205
               
               
               Cow position:chr12:44920037-44919860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:23-326
               
               
               Cow position:chr12:3197271-3196954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:24-416
               
               
               Cow position:chr12:36012611-36013002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:25-264
               
               
               Cow position:chr12:12030828-12031072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 66

               
               
               Conread position:25-318
               
               
               Cow position:chr12:19715037-19715318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 5

               
               
               Conread position:25-330
               
               
               Cow position:chr12:30805853-30805552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):114, 73

               
               
               Conread position:26-279
               
               
               Cow position:chr12:23798100-23797851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-308
               
               
               Cow position:chr12:25320916-25320642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-332
               
               
               Cow position:chr12:19691232-19691540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:26-334
               
               
               Cow position:chr12:3579285-3578975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:27-290
               
               
               Cow position:chr12:24107547-24107801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):114, 65

               
               
               Conread position:29-297
               
               
               Cow position:chr12:29770576-29770841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:29-316
               
               
               Cow position:chr12:8868879-8869172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 73

               
               
               Conread position:29-318
               
               
               Cow position:chr12:44622351-44622068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:29-332
               
               
               Cow position:chr12:12304383-12304096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:29-332
               
               
               Cow position:chr12:31959882-31959588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 6

               
               
               Conread position:29-335
               
               
               Cow position:chr12:37770873-37770563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:30-279
               
               
               Cow position:chr12:35779929-35780179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:30-304
               
               
               Cow position:chr12:42602248-42602517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-318
               
               
               Cow position:chr12:6488995-6489267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):6, 22

               
               
               Conread position:30-330
               
               
               Cow position:chr12:20479336-20479615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):148, 56

               
               
               Conread position:30-368
               
               
               Cow position:chr12:29411489-29411826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:31-245
               
               
               Cow position:chr12:30476475-30476268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-305
               
               
               Cow position:chr12:44846379-44846115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:32-264
               
               
               Cow position:chr12:43582768-43582541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:34-209
               
               
               Cow position:chr12:4122553-4122719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:34-280
               
               
               Cow position:chr12:43351823-43351587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 56

               
               
               Conread position:34-328
               
               
               Cow position:chr12:11583381-11583101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):145, 52

               
               
               Conread position:35-201
               
               
               Cow position:chr12:38692186-38692353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:35-316
               
               
               Cow position:chr12:16851016-16851298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:38-318
               
               
               Cow position:chr12:17495221-17495483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):143, 34

               
               
               Conread position:38-346
               
               
               Cow position:chr12:2670253-2669958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:38-354
               
               
               Cow position:chr12:27562841-27563166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:39-332
               
               
               Cow position:chr12:26782870-26782576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):147, 53

               
               
               Conread position:39-415
               
               
               Cow position:chr12:28572673-28572323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):150, 54

               
               
               Conread position:40-227
               
               
               Cow position:chr12:5639131-5638947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:40-333
               
               
               Cow position:chr12:4116474-4116199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:40-334
               
               
               Cow position:chr12:24032990-24032699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:40-415
               
               
               Cow position:chr12:2241904-2242269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):136, 39

               
               
               Conread position:45-317
               
               
               Cow position:chr12:3039491-3039224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:46-236
               
               
               Cow position:chr12:38511857-38512047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:46-347
               
               
               Cow position:chr12:40110361-40110070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):144, 42

               
               
               Conread position:47-204
               
               
               Cow position:chr12:20354954-20354796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:47-225
               
               
               Cow position:chr12:30227252-30227422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:47-240
               
               
               Cow position:chr12:25820452-25820638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:47-270
               
               
               Cow position:chr12:4182713-4182927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:47-316
               
               
               Cow position:chr12:22047448-22047182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:47-318
               
               
               Cow position:chr12:28650935-28650666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:47-354
               
               
               Cow position:chr12:25456097-25455787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:48-415
               
               
               Cow position:chr12:19039633-19039997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:52-240
               
               
               Cow position:chr12:18021565-18021388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:52-332
               
               
               Cow position:chr12:18937379-18937082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:55-279
               
               
               Cow position:chr12:6226683-6226899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:55-311
               
               
               Cow position:chr12:41214351-41214602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:55-318
               
               
               Cow position:chr12:27038783-27039057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-318
               
               
               Cow position:chr12:32391818-32391554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:56-332
               
               
               Cow position:chr12:46143791-46143516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:56-368
               
               
               Cow position:chr12:23379547-23379228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:57-293
               
               
               Cow position:chr12:17702258-17702499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:59-204
               
               
               Cow position:chr12:6957933-6957790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:59-318
               
               
               Cow position:chr12:33403059-33403302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):199, 42

               
               
               Conread position:59-330
               
               
               Cow position:chr12:34103165-34103439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:62-221
               
               
               Cow position:chr12:7191299-7191452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:62-245
               
               
               Cow position:chr12:44559551-44559372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:62-338
               
               
               Cow position:chr12:44767039-44766772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):158, 31

               
               
               Conread position:62-352
               
               
               Cow position:chr12:12938956-12939255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:66-268
               
               
               Cow position:chr12:6117864-6117661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:71-368
               
               
               Cow position:chr12:35354745-35354444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:74-318
               
               
               Cow position:chr12:24440774-24440521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:80-332
               
               
               Cow position:chr12:47929164-47928907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:82-335
               
               
               Cow position:chr12:16359829-16359566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:83-398
               
               
               Cow position:chr12:6698730-6698415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:84-310
               
               
               Cow position:chr12:18040645-18040875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:85-318
               
               
               Cow position:chr12:11109712-11109479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:85-318
               
               
               Cow position:chr12:17001207-17000967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:87-325
               
               
               Cow position:chr12:29694102-29694335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:87-332
               
               
               Cow position:chr12:17472282-17472525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:87-332
               
               
               Cow position:chr12:32786056-32786296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:88-243
               
               
               Cow position:chr12:11696624-11696463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:91-253
               
               
               Cow position:chr12:13066462-13066296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:91-332
               
               
               Cow position:chr12:35807621-35807371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:92-244
               
               
               Cow position:chr12:2805108-2805257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:92-318
               
               
               Cow position:chr12:24755094-24755315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):147, 41

               
               
               Conread position:92-318
               
               
               Cow position:chr12:26868854-26869087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 199

               
               
               Conread position:92-360
               
               
               Cow position:chr12:1284521-1284791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:93-310
               
               
               Cow position:chr12:18081611-18081826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:94-333
               
               
               Cow position:chr12:19866179-19865936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:96-318
               
               
               Cow position:chr12:31841378-31841150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 209

               
               
               Conread position:96-328
               
               
               Cow position:chr12:18123614-18123386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 10

               
               
               Conread position:96-330
               
               
               Cow position:chr12:36954440-36954678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:97-365
               
               
               Cow position:chr12:17708654-17708377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:99-326
               
               
               Cow position:chr12:12017811-12017577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:99-413
               
               
               Cow position:chr12:9413849-9414144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:100-366
               
               
               Cow position:chr12:37993791-37994061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:101-318
               
               
               Cow position:chr12:35218475-35218695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:104-317
               
               
               Cow position:chr12:22260895-22261104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:104-330
               
               
               Cow position:chr12:17982547-17982326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:104-332
               
               
               Cow position:chr12:19872353-19872133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:105-290
               
               
               Cow position:chr12:28804922-28804730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-331
               
               
               Cow position:chr12:18076460-18076230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:105-415
               
               
               Cow position:chr12:19420008-19420311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:106-279
               
               
               Cow position:chr12:15240797-15240976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-289
               
               
               Cow position:chr12:29161889-29162073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:106-290
               
               
               Cow position:chr12:3994882-3994686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-318
               
               
               Cow position:chr12:40158312-40158530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 199

               
               
               Conread position:106-318
               
               
               Cow position:chr12:42167574-42167355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:108-330
               
               
               Cow position:chr12:41083991-41083763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 31

               
               
               Conread position:108-368
               
               
               Cow position:chr12:7657706-7657450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:109-314
               
               
               Cow position:chr12:42282910-42283126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 170

               
               
               Conread position:109-318
               
               
               Cow position:chr12:1848611-1848829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:109-332
               
               
               Cow position:chr12:45814335-45814569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):28, 201

               
               
               Conread position:110-318
               
               
               Cow position:chr12:9229564-9229773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:110-332
               
               
               Cow position:chr12:44905563-44905332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:112-415
               
               
               Cow position:chr12:21486505-21486216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:113-309
               
               
               Cow position:chr12:3212247-3212042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-332
               
               
               Cow position:chr12:41979379-41979604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:115-232
               
               
               Cow position:chr12:31882264-31882147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-317
               
               
               Cow position:chr12:4134588-4134375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 195

               
               
               Conread position:116-269
               
               
               Cow position:chr12:24180812-24180655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:121-318
               
               
               Cow position:chr12:3880341-3880548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:123-296
               
               
               Cow position:chr12:8710735-8710562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:124-309
               
               
               Cow position:chr12:42698314-42698506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:127-316
               
               
               Cow position:chr12:10162048-10162244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:127-334
               
               
               Cow position:chr12:6687765-6687562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:128-332
               
               
               Cow position:chr12:34148445-34148656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:130-318
               
               
               Cow position:chr12:31925550-31925359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:130-342
               
               
               Cow position:chr12:15232190-15231974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 173

               
               
               Conread position:133-318
               
               
               Cow position:chr12:40307597-40307405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:133-333
               
               
               Cow position:chr12:5135044-5134833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:138-318
               
               
               Cow position:chr12:3076723-3076914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:142-318
               
               
               Cow position:chr12:25805221-25805401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:150-332
               
               
               Cow position:chr12:12976296-12976491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:151-415
               
               
               Cow position:chr12:29762715-29762989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:152-332
               
               
               Cow position:chr12:37123390-37123208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:156-318
               
               
               Cow position:chr12:7109066-7108897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:172-344
               
               
               Cow position:chr12:14131883-14132062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:173-335
               
               
               Cow position:chr12:3160925-3160756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:181-364
               
               
               Cow position:chr12:4191022-4190836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:184-318
               
               
               Cow position:chr12:25529881-25529739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:187-332
               
               
               Cow position:chr12:3600052-3600201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-175
               
               
               Cow position:chr13:3211470-3211642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:1-210
               
               
               Cow position:chr13:11591675-11591872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:1-240
               
               
               Cow position:chr13:7488462-7488695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:1-240
               
               
               Cow position:chr13:20231269-20231048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):188, 99

               
               
               Conread position:1-277
               
               
               Cow position:chr13:46181713-46181986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:1-284
               
               
               Cow position:chr13:37818830-37818553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:1-293
               
               
               Cow position:chr13:53195360-53195079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:1-305
               
               
               Cow position:chr13:17004672-17004368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-317
               
               
               Cow position:chr13:33256422-33256733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:1-318
               
               
               Cow position:chr13:10932472-10932790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:1-318
               
               
               Cow position:chr13:13765712-13766004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:1-318
               
               
               Cow position:chr13:45604495-45604180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:1-318
               
               
               Cow position:chr13:52283833-52284147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-326
               
               
               Cow position:chr13:18243783-18244102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:1-332
               
               
               Cow position:chr13:19023927-19023587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 118

               
               
               Conread position:1-342
               
               
               Cow position:chr13:29630778-29631114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:1-368
               
               
               Cow position:chr13:6621670-6621310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:2-316
               
               
               Cow position:chr13:34263446-34263137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:3-185
               
               
               Cow position:chr13:3989122-3989304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:3-290
               
               
               Cow position:chr13:17346735-17347017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-332
               
               
               Cow position:chr13:20606192-20605867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:3-354
               
               
               Cow position:chr13:22277253-22276897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):82, 76

               
               
               Conread position:4-314
               
               
               Cow position:chr13:17439842-17439533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:6-332
               
               
               Cow position:chr13:60329687-60330003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):133, 7

               
               
               Conread position:6-333
               
               
               Cow position:chr13:23270277-23269960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:7-187
               
               
               Cow position:chr13:60389559-60389385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):124, 80

               
               
               Conread position:7-222
               
               
               Cow position:chr13:11321688-11321478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:7-229
               
               
               Cow position:chr13:17966280-17966064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:7-263
               
               
               Cow position:chr13:29831502-29831251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 55

               
               
               Conread position:7-277
               
               
               Cow position:chr13:27314064-27314333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:7-279
               
               
               Cow position:chr13:24230143-24230412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:7-293
               
               
               Cow position:chr13:20839495-20839780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:7-296
               
               
               Cow position:chr13:58524860-58525138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:7-305
               
               
               Cow position:chr13:15192957-15192669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-306
               
               
               Cow position:chr13:18852009-18852302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:7-312
               
               
               Cow position:chr13:49804904-49805206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):132, 58

               
               
               Conread position:7-317
               
               
               Cow position:chr13:25547653-25547356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-317
               
               
               Cow position:chr13:28683291-28683595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 86

               
               
               Conread position:7-317
               
               
               Cow position:chr13:43869184-43868883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):133, 80

               
               
               Conread position:7-318
               
               
               Cow position:chr13:7010400-7010707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-318
               
               
               Cow position:chr13:15885093-15884776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr13:20180342-20180635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:7-318
               
               
               Cow position:chr13:24585975-24586285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:7-318
               
               
               Cow position:chr13:40722778-40722472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):124, 77

               
               
               Conread position:7-318
               
               
               Cow position:chr13:47756292-47756613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:7-323
               
               
               Cow position:chr13:43194098-43194418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:7-326
               
               
               Cow position:chr13:6079483-6079173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:7-326
               
               
               Cow position:chr13:61166521-61166211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):182, 19

               
               
               Conread position:7-332
               
               
               Cow position:chr13:15166747-15167070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:7-332
               
               
               Cow position:chr13:54702115-54702442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-332
               
               
               Cow position:chr13:60509191-60508864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):142, 81

               
               
               Conread position:7-333
               
               
               Cow position:chr13:12546979-12546654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 92

               
               
               Conread position:7-333
               
               
               Cow position:chr13:19138369-19138690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:7-335
               
               
               Cow position:chr13:38278219-38277882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:7-335
               
               
               Cow position:chr13:44201936-44202244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):110, 45

               
               
               Conread position:7-368
               
               
               Cow position:chr13:38012261-38012648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 135

               
               
               Conread position:7-415
               
               
               Cow position:chr13:32167383-32166975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:7-415
               
               
               Cow position:chr13:57746176-57745759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-431
               
               
               Cow position:chr13:17622217-17622628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:8-240
               
               
               Cow position:chr13:4208884-4208662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:8-318
               
               
               Cow position:chr13:9802997-9803295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:8-339
               
               
               Cow position:chr13:9975144-9974810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:8-455
               
               
               Cow position:chr13:16020781-16021222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:9-137
               
               
               Cow position:chr13:24110411-24110538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-147
               
               
               Cow position:chr13:62008038-62008175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-152
               
               
               Cow position:chr13:17563670-17563804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:9-174
               
               
               Cow position:chr13:15964247-15964408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-192
               
               
               Cow position:chr13:13297603-13297782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-197
               
               
               Cow position:chr13:47322479-47322291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-202
               
               
               Cow position:chr13:27550670-27550857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:9-203
               
               
               Cow position:chr13:14576144-14576325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:9-209
               
               
               Cow position:chr13:2803403-2803594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-209
               
               
               Cow position:chr13:18973515-18973314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:9-210
               
               
               Cow position:chr13:25380894-25381088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:9-227
               
               
               Cow position:chr13:20360210-20360413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-229
               
               
               Cow position:chr13:44003632-44003864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:9-231
               
               
               Cow position:chr13:1363625-1363841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-231
               
               
               Cow position:chr13:26698567-26698350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-232
               
               
               Cow position:chr13:6930846-6931063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:9-232
               
               
               Cow position:chr13:13238507-13238725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:9-235
               
               
               Cow position:chr13:9265896-9265681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):168, 26

               
               
               Conread position:9-237
               
               
               Cow position:chr13:18999466-18999695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:9-240
               
               
               Cow position:chr13:13338787-13339016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-240
               
               
               Cow position:chr13:13954462-13954232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-240
               
               
               Cow position:chr13:15110245-15110476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-240
               
               
               Cow position:chr13:19582152-19581931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:9-240
               
               
               Cow position:chr13:49507919-49507693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:9-241
               
               
               Cow position:chr13:8555392-8555620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-244
               
               
               Cow position:chr13:39367890-39368117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:9-245
               
               
               Cow position:chr13:49022937-49022709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):221, 78

               
               
               Conread position:9-261
               
               
               Cow position:chr13:5758411-5758164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-262
               
               
               Cow position:chr13:19188232-19188486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-262
               
               
               Cow position:chr13:52055661-52055414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:9-263
               
               
               Cow position:chr13:11643870-11644116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-263
               
               
               Cow position:chr13:15991299-15991039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:9-263
               
               
               Cow position:chr13:49503601-49503345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-264
               
               
               Cow position:chr13:2404685-2404927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-264
               
               
               Cow position:chr13:12619184-12618925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:9-265
               
               
               Cow position:chr13:55583126-55583384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:9-268
               
               
               Cow position:chr13:15195274-15195021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):127, 25

               
               
               Conread position:9-277
               
               
               Cow position:chr13:8652511-8652240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:9-279
               
               
               Cow position:chr13:9643956-9643683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 77

               
               
               Conread position:9-279
               
               
               Cow position:chr13:23512301-23512558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):130, 64

               
               
               Conread position:9-279
               
               
               Cow position:chr13:59170584-59170856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:9-282
               
               
               Cow position:chr13:20679270-20679547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-282
               
               
               Cow position:chr13:37593015-37592736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:9-289
               
               
               Cow position:chr13:16834145-16833869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:9-290
               
               
               Cow position:chr13:60340737-60341024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-293
               
               
               Cow position:chr13:6974092-6974373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-293
               
               
               Cow position:chr13:42092498-42092229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-293
               
               
               Cow position:chr13:51015247-51014967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-293
               
               
               Cow position:chr13:52228169-52227887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-294
               
               
               Cow position:chr13:19022202-19022492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-296
               
               
               Cow position:chr13:4463943-4464223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):177, 26

               
               
               Conread position:9-296
               
               
               Cow position:chr13:18491527-18491810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:9-296
               
               
               Cow position:chr13:40491146-40491449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 84

               
               
               Conread position:9-303
               
               
               Cow position:chr13:21039668-21039375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-307
               
               
               Cow position:chr13:25531859-25531561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:9-307
               
               
               Cow position:chr13:34261162-34261459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 82

               
               
               Conread position:9-309
               
               
               Cow position:chr13:11096111-11096401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-309
               
               
               Cow position:chr13:20650055-20649754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-310
               
               
               Cow position:chr13:8609616-8609318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:9-310
               
               
               Cow position:chr13:12206979-12207273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-310
               
               
               Cow position:chr13:43919330-43919026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):93, 79

               
               
               Conread position:9-311
               
               
               Cow position:chr13:11768112-11767810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 8

               
               
               Conread position:9-311
               
               
               Cow position:chr13:15041542-15041241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:9-311
               
               
               Cow position:chr13:19033489-19033778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 57

               
               
               Conread position:9-311
               
               
               Cow position:chr13:21155569-21155258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:9-311
               
               
               Cow position:chr13:21242153-21241861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):229, 70

               
               
               Conread position:9-311
               
               
               Cow position:chr13:32657869-32657575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-311
               
               
               Cow position:chr13:43184950-43184641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:9-311
               
               
               Cow position:chr13:54094741-54095035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-312
               
               
               Cow position:chr13:12045407-12045103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:9-314
               
               
               Cow position:chr13:11821084-11821376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:9-314
               
               
               Cow position:chr13:30026038-30026347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:9-316
               
               
               Cow position:chr13:7076188-7076492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-316
               
               
               Cow position:chr13:55316260-55315953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-316
               
               
               Cow position:chr13:60650974-60650684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):213, 66

               
               
               Conread position:9-317
               
               
               Cow position:chr13:8201552-8201248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:9-317
               
               
               Cow position:chr13:12282756-12283072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:9-317
               
               
               Cow position:chr13:17855303-17855611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr13:42113950-42114258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr13:1043038-1042718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-318
               
               
               Cow position:chr13:12614184-12614498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr13:12670520-12670207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:9-318
               
               
               Cow position:chr13:13176581-13176887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:9-318
               
               
               Cow position:chr13:13260934-13261246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr13:15621741-15622045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:9-318
               
               
               Cow position:chr13:15958545-15958859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:9-318
               
               
               Cow position:chr13:20271294-20270978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):148, 23

               
               
               Conread position:9-318
               
               
               Cow position:chr13:20706274-20705965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr13:24376424-24376728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr13:24753818-24754122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr13:32535588-32535891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr13:34375190-34375493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 110

               
               
               Conread position:9-318
               
               
               Cow position:chr13:34941719-34941419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr13:37381732-37382049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr13:38873013-38872734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr13:46312086-46311798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr13:51528512-51528208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 58

               
               
               Conread position:9-318
               
               
               Cow position:chr13:53536377-53536068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:9-318
               
               
               Cow position:chr13:55674277-55673967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-321
               
               
               Cow position:chr13:6061077-6060767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-324
               
               
               Cow position:chr13:8524687-8524377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-326
               
               
               Cow position:chr13:7663491-7663183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-328
               
               
               Cow position:chr13:890238-889931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:9-328
               
               
               Cow position:chr13:9142210-9142530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-329
               
               
               Cow position:chr13:17971099-17970786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:9-329
               
               
               Cow position:chr13:48597840-48598153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-330
               
               
               Cow position:chr13:20562924-20563248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-330
               
               
               Cow position:chr13:20879893-20879585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):180, 63

               
               
               Conread position:9-331
               
               
               Cow position:chr13:18989653-18989956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-331
               
               
               Cow position:chr13:21275790-21276106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-331
               
               
               Cow position:chr13:31813807-31814118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):285, 70

               
               
               Conread position:9-331
               
               
               Cow position:chr13:44626299-44626631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr13:1155772-1155456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:9-332
               
               
               Cow position:chr13:6616828-6616496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:9-332
               
               
               Cow position:chr13:12574565-12574886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:9-332
               
               
               Cow position:chr13:12876044-12875733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-332
               
               
               Cow position:chr13:18166663-18166982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-332
               
               
               Cow position:chr13:20784521-20784840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):215, 88

               
               
               Conread position:9-332
               
               
               Cow position:chr13:25435192-25434877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr13:31808452-31808764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):172, 46

               
               
               Conread position:9-332
               
               
               Cow position:chr13:32283059-32283379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:9-332
               
               
               Cow position:chr13:34035298-34035620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:9-332
               
               
               Cow position:chr13:40651865-40652185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-332
               
               
               Cow position:chr13:52894078-52894394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:9-332
               
               
               Cow position:chr13:58043559-58043880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr13:61047145-61047458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:9-333
               
               
               Cow position:chr13:11060919-11061237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-334
               
               
               Cow position:chr13:3315744-3315419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-334
               
               
               Cow position:chr13:34728912-34728585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:9-335
               
               
               Cow position:chr13:60966700-60967019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:9-340
               
               
               Cow position:chr13:46736146-46736464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-349
               
               
               Cow position:chr13:23856142-23856484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:9-350
               
               
               Cow position:chr13:25926721-25927062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-350
               
               
               Cow position:chr13:33631060-33631390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-354
               
               
               Cow position:chr13:43595177-43594842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:9-358
               
               
               Cow position:chr13:14063590-14063250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-364
               
               
               Cow position:chr13:42200550-42200900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-368
               
               
               Cow position:chr13:23167170-23166811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-370
               
               
               Cow position:chr13:9587658-9587293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:9-395
               
               
               Cow position:chr13:17977284-17977641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-405
               
               
               Cow position:chr13:6835864-6835492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:9-411
               
               
               Cow position:chr13:51940665-51941052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-413
               
               
               Cow position:chr13:17158947-17158539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:9-415
               
               
               Cow position:chr13:2413960-2414351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr13:8362812-8362419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr13:12449057-12448661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-415
               
               
               Cow position:chr13:17613271-17613673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:9-415
               
               
               Cow position:chr13:20666455-20666061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr13:30798653-30799049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr13:36771491-36771095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-415
               
               
               Cow position:chr13:50690467-50690065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:10-289
               
               
               Cow position:chr13:151895-152160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):229, 69

               
               
               Conread position:10-290
               
               
               Cow position:chr13:40943175-40943458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-314
               
               
               Cow position:chr13:24369513-24369819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 72

               
               
               Conread position:10-318
               
               
               Cow position:chr13:60974011-60974313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 25

               
               
               Conread position:10-330
               
               
               Cow position:chr13:37069277-37069599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:10-340
               
               
               Cow position:chr13:56148453-56148799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:10-340
               
               
               Cow position:chr13:56160514-56160168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:11-147
               
               
               Cow position:chr13:7356540-7356673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-199
               
               
               Cow position:chr13:51901517-51901703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:11-222
               
               
               Cow position:chr13:51116091-51115890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:11-235
               
               
               Cow position:chr13:47188369-47188594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:11-237
               
               
               Cow position:chr13:52929644-52929862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:11-264
               
               
               Cow position:chr13:14771385-14771645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-264
               
               
               Cow position:chr13:22085813-22085567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-286
               
               
               Cow position:chr13:9593438-9593713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-293
               
               
               Cow position:chr13:17745176-17745452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:11-296
               
               
               Cow position:chr13:12202295-12202581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:11-303
               
               
               Cow position:chr13:7059395-7059698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:11-307
               
               
               Cow position:chr13:2774060-2774352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:11-317
               
               
               Cow position:chr13:38284045-38283747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:11-318
               
               
               Cow position:chr13:10924988-10924668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 203

               
               
               Conread position:11-318
               
               
               Cow position:chr13:17114446-17114142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr13:41155101-41154808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:11-324
               
               
               Cow position:chr13:17021793-17021476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:11-328
               
               
               Cow position:chr13:3016241-3015920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-328
               
               
               Cow position:chr13:19393225-19393535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 10

               
               
               Conread position:11-332
               
               
               Cow position:chr13:13088962-13089275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:11-336
               
               
               Cow position:chr13:34995396-34995070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:11-337
               
               
               Cow position:chr13:16343625-16343943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):128, 40

               
               
               Conread position:11-343
               
               
               Cow position:chr13:9246664-9246977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 76

               
               
               Conread position:11-349
               
               
               Cow position:chr13:1958940-1959278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:11-368
               
               
               Cow position:chr13:15974551-15974898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:11-415
               
               
               Cow position:chr13:14717407-14717010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr13:38329549-38329959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):86, 327

               
               
               Conread position:11-415
               
               
               Cow position:chr13:43762101-43762498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 76

               
               
               Conread position:13-326
               
               
               Cow position:chr13:37517206-37516890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:13-332
               
               
               Cow position:chr13:57494254-57493932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:14-203
               
               
               Cow position:chr13:15194799-15194613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):127, 66

               
               
               Conread position:14-210
               
               
               Cow position:chr13:25579254-25579061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:14-234
               
               
               Cow position:chr13:20128602-20128815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:14-237
               
               
               Cow position:chr13:25537559-25537785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:14-240
               
               
               Cow position:chr13:54582808-54583033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:14-245
               
               
               Cow position:chr13:4420278-4420508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:14-279
               
               
               Cow position:chr13:15529098-15528829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:14-279
               
               
               Cow position:chr13:26369459-26369725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:14-316
               
               
               Cow position:chr13:2463299-2462995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):125, 71

               
               
               Conread position:14-317
               
               
               Cow position:chr13:5279262-5278951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:14-317
               
               
               Cow position:chr13:8839054-8838757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):228, 74

               
               
               Conread position:14-317
               
               
               Cow position:chr13:16024525-16024825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-318
               
               
               Cow position:chr13:45352967-45353280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 294

               
               
               Conread position:14-318
               
               
               Cow position:chr13:45725829-45726117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:14-328
               
               
               Cow position:chr13:24715177-24715485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:14-411
               
               
               Cow position:chr13:41253557-41253949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 63

               
               
               Conread position:14-413
               
               
               Cow position:chr13:37484343-37483945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):198, 125

               
               
               Conread position:15-310
               
               
               Cow position:chr13:29814476-29814771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:16-218
               
               
               Cow position:chr13:12745609-12745805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:16-296
               
               
               Cow position:chr13:8245393-8245116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):146, 16

               
               
               Conread position:16-318
               
               
               Cow position:chr13:54080877-54080566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):146, 70

               
               
               Conread position:16-325
               
               
               Cow position:chr13:20880991-20880681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:16-348
               
               
               Cow position:chr13:11955177-11954845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:16-415
               
               
               Cow position:chr13:26383297-26382903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:17-279
               
               
               Cow position:chr13:46111904-46112166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:18-311
               
               
               Cow position:chr13:15349304-15349039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:19-182
               
               
               Cow position:chr13:22227780-22227623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:19-318
               
               
               Cow position:chr13:20466344-20466057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:19-318
               
               
               Cow position:chr13:30509997-30510299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:19-325
               
               
               Cow position:chr13:13578092-13577792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):143, 60

               
               
               Conread position:19-353
               
               
               Cow position:chr13:9665000-9665348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:20-215
               
               
               Cow position:chr13:18929468-18929662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:20-227
               
               
               Cow position:chr13:28552530-28552739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):146, 96

               
               
               Conread position:20-231
               
               
               Cow position:chr13:26743069-26743270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:20-293
               
               
               Cow position:chr13:2192653-2192921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:20-318
               
               
               Cow position:chr13:25695826-25695530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-318
               
               
               Cow position:chr13:37985802-37985513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):210, 70

               
               
               Conread position:20-331
               
               
               Cow position:chr13:13306034-13306357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:20-332
               
               
               Cow position:chr13:23265674-23265981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:21-198
               
               
               Cow position:chr13:56677956-56678129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:21-227
               
               
               Cow position:chr13:11381780-11381579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:21-230
               
               
               Cow position:chr13:8374830-8374626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-231
               
               
               Cow position:chr13:54389078-54388874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-305
               
               
               Cow position:chr13:17800015-17800297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:21-330
               
               
               Cow position:chr13:21176379-21176074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-332
               
               
               Cow position:chr13:25817469-25817765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:21-334
               
               
               Cow position:chr13:23478973-23479283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):212, 78

               
               
               Conread position:21-352
               
               
               Cow position:chr13:30693657-30693973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:22-282
               
               
               Cow position:chr13:15281996-15281734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:23-331
               
               
               Cow position:chr13:39952474-39952163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:23-332
               
               
               Cow position:chr13:6153839-6153527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:23-415
               
               
               Cow position:chr13:33517978-33517581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:24-247
               
               
               Cow position:chr13:14870478-14870692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):156, 64

               
               
               Conread position:24-331
               
               
               Cow position:chr13:54418162-54418483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:24-332
               
               
               Cow position:chr13:971952-971646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:25-235
               
               
               Cow position:chr13:61990388-61990187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:25-318
               
               
               Cow position:chr13:26480263-26479976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:26-264
               
               
               Cow position:chr13:21283756-21283522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):198, 58

               
               
               Conread position:26-309
               
               
               Cow position:chr13:43480005-43480290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-316
               
               
               Cow position:chr13:56686379-56686663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:26-318
               
               
               Cow position:chr13:48037568-48037858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:26-332
               
               
               Cow position:chr13:34281623-34281932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 53

               
               
               Conread position:26-334
               
               
               Cow position:chr13:311383-311684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-352
               
               
               Cow position:chr13:45023264-45022935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-360
               
               
               Cow position:chr13:1779777-1780115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:27-342
               
               
               Cow position:chr13:5658777-5658469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:28-329
               
               
               Cow position:chr13:34052641-34052353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:29-263
               
               
               Cow position:chr13:62474848-62474616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):201, 64

               
               
               Conread position:29-282
               
               
               Cow position:chr13:19223599-19223851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 5

               
               
               Conread position:29-293
               
               
               Cow position:chr13:45073970-45073722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:29-296
               
               
               Cow position:chr13:10845548-10845809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):110, 5

               
               
               Conread position:29-311
               
               
               Cow position:chr13:47964237-47963970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:29-318
               
               
               Cow position:chr13:47863752-47863461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):110, 50

               
               
               Conread position:30-240
               
               
               Cow position:chr13:36345928-36346127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):5, 9

               
               
               Conread position:30-286
               
               
               Cow position:chr13:57475466-57475211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:30-291
               
               
               Cow position:chr13:51821925-51821681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:30-318
               
               
               Cow position:chr13:1170414-1170706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 25

               
               
               Conread position:30-318
               
               
               Cow position:chr13:33352399-33352129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):200, 56

               
               
               Conread position:30-325
               
               
               Cow position:chr13:42860622-42860325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:30-328
               
               
               Cow position:chr13:19364197-19364492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:30-332
               
               
               Cow position:chr13:15445993-15446298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:30-333
               
               
               Cow position:chr13:6759845-6759537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:30-333
               
               
               Cow position:chr13:10989122-10988821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:30-333
               
               
               Cow position:chr13:19178224-19178529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:30-333
               
               
               Cow position:chr13:20682901-20683199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-349
               
               
               Cow position:chr13:52284760-52285084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-414
               
               
               Cow position:chr13:60430130-60429755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:31-203
               
               
               Cow position:chr13:18995075-18995247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:32-318
               
               
               Cow position:chr13:1635959-1636239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:32-363
               
               
               Cow position:chr13:46637171-46636848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:35-280
               
               
               Cow position:chr13:7789964-7790209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 149

               
               
               Conread position:35-307
               
               
               Cow position:chr13:35719185-35718907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):190, 50

               
               
               Conread position:37-358
               
               
               Cow position:chr13:52879371-52879688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):144, 53

               
               
               Conread position:38-328
               
               
               Cow position:chr13:47312876-47313151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:39-309
               
               
               Cow position:chr13:46458579-46458851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:39-318
               
               
               Cow position:chr13:22115654-22115941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 178

               
               
               Conread position:39-318
               
               
               Cow position:chr13:24155490-24155778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 179

               
               
               Conread position:40-318
               
               
               Cow position:chr13:12682584-12682303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):190, 52

               
               
               Conread position:40-318
               
               
               Cow position:chr13:53566556-53566834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:43-216
               
               
               Cow position:chr13:6389345-6389512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:43-231
               
               
               Cow position:chr13:16711592-16711777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:43-290
               
               
               Cow position:chr13:13465812-13465580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):146, 30

               
               
               Conread position:43-318
               
               
               Cow position:chr13:20174714-20174977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:43-415
               
               
               Cow position:chr13:1011296-1011659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:45-318
               
               
               Cow position:chr13:5091702-5091423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:46-178
               
               
               Cow position:chr13:13809595-13809467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:47-240
               
               
               Cow position:chr13:20853918-20853722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:47-240
               
               
               Cow position:chr13:51199289-51199475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:47-293
               
               
               Cow position:chr13:20042001-20041748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):140, 41

               
               
               Conread position:47-300
               
               
               Cow position:chr13:11147272-11147526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:47-305
               
               
               Cow position:chr13:9548662-9548916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:47-311
               
               
               Cow position:chr13:54093714-54093971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-315
               
               
               Cow position:chr13:51108452-51108724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 67

               
               
               Conread position:49-327
               
               
               Cow position:chr13:3003400-3003694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:52-332
               
               
               Cow position:chr13:5752454-5752171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:54-241
               
               
               Cow position:chr13:18941852-18942041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:55-282
               
               
               Cow position:chr13:20531172-20530939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):126, 33

               
               
               Conread position:55-307
               
               
               Cow position:chr13:37946229-37945989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-311
               
               
               Cow position:chr13:4866994-4866749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:55-318
               
               
               Cow position:chr13:4552768-4553037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:55-334
               
               
               Cow position:chr13:21107116-21107378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:55-335
               
               
               Cow position:chr13:52178085-52178353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:56-201
               
               
               Cow position:chr13:55947751-55947891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:56-296
               
               
               Cow position:chr13:6975817-6975574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):172, 44

               
               
               Conread position:56-318
               
               
               Cow position:chr13:15869101-15869357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:56-332
               
               
               Cow position:chr13:27525299-27525010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):8, 256

               
               
               Conread position:56-335
               
               
               Cow position:chr13:25249180-25248889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:56-364
               
               
               Cow position:chr13:9569982-9570265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-332
               
               
               Cow position:chr13:13265785-13266053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:62-308
               
               
               Cow position:chr13:54237337-54237574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:62-317
               
               
               Cow position:chr13:43812070-43812319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:62-317
               
               
               Cow position:chr13:43839559-43839310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:63-307
               
               
               Cow position:chr13:37980660-37980420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 138

               
               
               Conread position:65-323
               
               
               Cow position:chr13:12977552-12977804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:65-331
               
               
               Cow position:chr13:7257383-7257652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:66-240
               
               
               Cow position:chr13:1338989-1339166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:71-324
               
               
               Cow position:chr13:61170733-61170472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:76-326
               
               
               Cow position:chr13:49283357-49283097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:79-245
               
               
               Cow position:chr13:24776277-24776440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:82-332
               
               
               Cow position:chr13:14544116-14544374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:83-307
               
               
               Cow position:chr13:20536503-20536727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:83-316
               
               
               Cow position:chr13:32773366-32773598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:84-296
               
               
               Cow position:chr13:18172338-18172556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:84-318
               
               
               Cow position:chr13:55295623-55295388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:84-330
               
               
               Cow position:chr13:15172412-15172157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:84-332
               
               
               Cow position:chr13:19426696-19426446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:84-340
               
               
               Cow position:chr13:25261810-25261547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:85-290
               
               
               Cow position:chr13:52199089-52199299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:86-326
               
               
               Cow position:chr13:21708187-21708427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:87-260
               
               
               Cow position:chr13:966078-966257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:87-296
               
               
               Cow position:chr13:563138-562922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:87-312
               
               
               Cow position:chr13:9884772-9885000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:87-331
               
               
               Cow position:chr13:32017525-32017272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):19, 221

               
               
               Conread position:88-318
               
               
               Cow position:chr13:35659756-35659991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-328
               
               
               Cow position:chr13:47007723-47007490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:88-334
               
               
               Cow position:chr13:54344773-54345030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 252

               
               
               Conread position:88-342
               
               
               Cow position:chr13:52922097-52922350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:89-318
               
               
               Cow position:chr13:8607514-8607281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:89-326
               
               
               Cow position:chr13:9125671-9125919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:89-354
               
               
               Cow position:chr13:7262396-7262668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:90-354
               
               
               Cow position:chr13:24822758-24822496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:90-358
               
               
               Cow position:chr13:24280252-24280526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):142, 50

               
               
               Conread position:91-318
               
               
               Cow position:chr13:20814275-20814042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:91-318
               
               
               Cow position:chr13:20816318-20816551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:92-220
               
               
               Cow position:chr13:29958689-29958815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:92-229
               
               
               Cow position:chr13:49520814-49520677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-317
               
               
               Cow position:chr13:2339442-2339666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-318
               
               
               Cow position:chr13:21235677-21235447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:92-318
               
               
               Cow position:chr13:55843488-55843722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:92-326
               
               
               Cow position:chr13:27027766-27027523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:92-349
               
               
               Cow position:chr13:4664859-4664592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:92-415
               
               
               Cow position:chr13:34507882-34508203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):6, 58

               
               
               Conread position:93-341
               
               
               Cow position:chr13:21904670-21904919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 207

               
               
               Conread position:94-232
               
               
               Cow position:chr13:53070161-53070022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:94-415
               
               
               Cow position:chr13:60690718-60690392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 230

               
               
               Conread position:95-318
               
               
               Cow position:chr13:23960805-23960568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:96-291
               
               
               Cow position:chr13:20509743-20509943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:96-311
               
               
               Cow position:chr13:21209869-21210093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:96-332
               
               
               Cow position:chr13:15740075-15740318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:96-415
               
               
               Cow position:chr13:18835205-18835513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:97-263
               
               
               Cow position:chr13:52858588-52858764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:97-332
               
               
               Cow position:chr13:6945379-6945625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:99-245
               
               
               Cow position:chr13:22030103-22030249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 119

               
               
               Conread position:99-304
               
               
               Cow position:chr13:48944684-48944885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:99-334
               
               
               Cow position:chr13:8824283-8824518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:100-318
               
               
               Cow position:chr13:33875681-33875900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:100-326
               
               
               Cow position:chr13:61976950-61976719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 191

               
               
               Conread position:100-328
               
               
               Cow position:chr13:32717859-32717623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:102-243
               
               
               Cow position:chr13:9900165-9900308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:104-203
               
               
               Cow position:chr13:4514479-4514580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-314
               
               
               Cow position:chr13:5713319-5713528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:104-414
               
               
               Cow position:chr13:15162633-15162343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:105-264
               
               
               Cow position:chr13:5079203-5079041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:105-318
               
               
               Cow position:chr13:44322924-44323141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:105-318
               
               
               Cow position:chr13:60599921-60599704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:105-332
               
               
               Cow position:chr13:30651198-30651427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-352
               
               
               Cow position:chr13:34299609-34299372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:106-305
               
               
               Cow position:chr13:37521359-37521155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-368
               
               
               Cow position:chr13:26261778-26261505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:107-264
               
               
               Cow position:chr13:47186246-47186408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-316
               
               
               Cow position:chr13:36949151-36948934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:107-332
               
               
               Cow position:chr13:16292565-16292798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:107-360
               
               
               Cow position:chr13:48251964-48251712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:107-415
               
               
               Cow position:chr13:43629755-43629437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:108-332
               
               
               Cow position:chr13:54381914-54381683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 198

               
               
               Conread position:109-332
               
               
               Cow position:chr13:1839405-1839632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:109-332
               
               
               Cow position:chr13:6606999-6606768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:113-318
               
               
               Cow position:chr13:24539519-24539733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:113-334
               
               
               Cow position:chr13:46501329-46501558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:114-318
               
               
               Cow position:chr13:17993958-17994164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:116-332
               
               
               Cow position:chr13:52010549-52010334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:117-315
               
               
               Cow position:chr13:18551476-18551683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:120-249
               
               
               Cow position:chr13:58743254-58743120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:123-264
               
               
               Cow position:chr13:22025671-22025525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:124-334
               
               
               Cow position:chr13:19555797-19556006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:128-316
               
               
               Cow position:chr13:17815811-17816007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:128-318
               
               
               Cow position:chr13:20820793-20820603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):11, 171

               
               
               Conread position:128-318
               
               
               Cow position:chr13:37497706-37497520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:128-334
               
               
               Cow position:chr13:11460668-11460877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:130-291
               
               
               Cow position:chr13:33054350-33054184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:130-307
               
               
               Cow position:chr13:14927280-14927466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:131-332
               
               
               Cow position:chr13:32949962-32949751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:133-335
               
               
               Cow position:chr13:36264017-36264219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:133-415
               
               
               Cow position:chr13:25062456-25062742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 83

               
               
               Conread position:134-334
               
               
               Cow position:chr13:11290771-11290566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:138-307
               
               
               Cow position:chr13:37947949-37947784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:138-326
               
               
               Cow position:chr13:41608314-41608126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:138-327
               
               
               Cow position:chr13:56155105-56154914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:142-328
               
               
               Cow position:chr13:46525388-46525195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:148-318
               
               
               Cow position:chr13:27985366-27985191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:150-325
               
               
               Cow position:chr13:54331081-54331264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:152-318
               
               
               Cow position:chr13:8195151-8195320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:152-328
               
               
               Cow position:chr13:60436818-60436635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:158-332
               
               
               Cow position:chr13:48629067-48629242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:169-318
               
               
               Cow position:chr13:29122751-29122604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:169-344
               
               
               Cow position:chr13:10859877-10859700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 164

               
               
               Conread position:170-363
               
               
               Cow position:chr13:15850073-15850276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:173-312
               
               
               Cow position:chr13:17762980-17762841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-342
               
               
               Cow position:chr13:29671341-29671179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:1-135
               
               
               Cow position:chr14:803664-803794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:1-235
               
               
               Cow position:chr14:19394341-19394568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):137, 87

               
               
               Conread position:1-309
               
               
               Cow position:chr14:47609604-47609301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-317
               
               
               Cow position:chr14:6735885-6735571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:1-318
               
               
               Cow position:chr14:19594158-19593844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):5, 131

               
               
               Conread position:1-318
               
               
               Cow position:chr14:20640650-20640325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:1-326
               
               
               Cow position:chr14:45677209-45677527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 57

               
               
               Conread position:1-332
               
               
               Cow position:chr14:28795650-28795986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-361
               
               
               Cow position:chr14:12856578-12856935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 113

               
               
               Conread position:1-368
               
               
               Cow position:chr14:19851048-19850684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-393
               
               
               Cow position:chr14:40269863-40269478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:2-237
               
               
               Cow position:chr14:26490761-26490533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:2-315
               
               
               Cow position:chr14:20712709-20712389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:2-350
               
               
               Cow position:chr14:8488169-8488512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:2-415
               
               
               Cow position:chr14:17755549-17755944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):137, 70

               
               
               Conread position:3-147
               
               
               Cow position:chr14:46061924-46062066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:3-240
               
               
               Cow position:chr14:26191122-26190886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:3-278
               
               
               Cow position:chr14:27076959-27077222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 150

               
               
               Conread position:3-364
               
               
               Cow position:chr14:27104064-27104436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:3-410
               
               
               Cow position:chr14:47973966-47974369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:4-327
               
               
               Cow position:chr14:16834305-16834635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:4-368
               
               
               Cow position:chr14:36709107-36709468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):183, 46

               
               
               Conread position:7-205
               
               
               Cow position:chr14:21933357-21933163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):132, 93

               
               
               Conread position:7-208
               
               
               Cow position:chr14:4203112-4202912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 93

               
               
               Conread position:7-209
               
               
               Cow position:chr14:46685289-46685480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:7-232
               
               
               Cow position:chr14:5572929-5573147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):171, 89

               
               
               Conread position:7-286
               
               
               Cow position:chr14:28003954-28004244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:7-289
               
               
               Cow position:chr14:25378510-25378224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 72

               
               
               Conread position:7-304
               
               
               Cow position:chr14:13426836-13427100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:7-311
               
               
               Cow position:chr14:40033981-40034259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):224, 22

               
               
               Conread position:7-318
               
               
               Cow position:chr14:6599971-6599658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:7-318
               
               
               Cow position:chr14:20016721-20016411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:7-318
               
               
               Cow position:chr14:40230649-40230341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):132, 53

               
               
               Conread position:7-329
               
               
               Cow position:chr14:26097707-26097381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 94

               
               
               Conread position:7-330
               
               
               Cow position:chr14:5222305-5221981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:7-331
               
               
               Cow position:chr14:14622190-14621877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:7-331
               
               
               Cow position:chr14:31130389-31130080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:7-333
               
               
               Cow position:chr14:39821151-39821477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:7-340
               
               
               Cow position:chr14:38355174-38355501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):235, 45

               
               
               Conread position:7-355
               
               
               Cow position:chr14:6984976-6984635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:7-358
               
               
               Cow position:chr14:44257909-44258251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:8-186
               
               
               Cow position:chr14:41302843-41302671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:8-296
               
               
               Cow position:chr14:14221758-14222049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 39

               
               
               Conread position:8-296
               
               
               Cow position:chr14:17841305-17841013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 92

               
               
               Conread position:8-318
               
               
               Cow position:chr14:44237736-44237404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 80

               
               
               Conread position:8-358
               
               
               Cow position:chr14:43031783-43032142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):126, 71

               
               
               Conread position:9-170
               
               
               Cow position:chr14:16352336-16352488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-180
               
               
               Cow position:chr14:7036369-7036202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-180
               
               
               Cow position:chr14:41253002-41252836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 17

               
               
               Conread position:9-185
               
               
               Cow position:chr14:40754259-40754085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:9-186
               
               
               Cow position:chr14:1868811-1868643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:9-187
               
               
               Cow position:chr14:27275151-27275320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-187
               
               
               Cow position:chr14:42437013-42437185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:9-198
               
               
               Cow position:chr14:46998027-46998217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 113

               
               
               Conread position:9-202
               
               
               Cow position:chr14:12511909-12511726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:9-205
               
               
               Cow position:chr14:12035398-12035586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:9-209
               
               
               Cow position:chr14:44084501-44084297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 190

               
               
               Conread position:9-209
               
               
               Cow position:chr14:45045585-45045788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:9-210
               
               
               Cow position:chr14:24607955-24608149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-240
               
               
               Cow position:chr14:15313549-15313767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-240
               
               
               Cow position:chr14:33830290-33830510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:9-260
               
               
               Cow position:chr14:12520314-12520071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-264
               
               
               Cow position:chr14:29029817-29030070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-264
               
               
               Cow position:chr14:32732740-32732992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:9-268
               
               
               Cow position:chr14:12667717-12667978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):115, 79

               
               
               Conread position:9-279
               
               
               Cow position:chr14:14979720-14979446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:9-279
               
               
               Cow position:chr14:28115199-28114926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-279
               
               
               Cow position:chr14:33309515-33309252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-279
               
               
               Cow position:chr14:33338487-33338223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:9-282
               
               
               Cow position:chr14:13845973-13846246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):233, 114

               
               
               Conread position:9-282
               
               
               Cow position:chr14:40432913-40433181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-282
               
               
               Cow position:chr14:50362782-50363065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-290
               
               
               Cow position:chr14:8786559-8786281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-290
               
               
               Cow position:chr14:10609668-10609957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:9-293
               
               
               Cow position:chr14:7695256-7695521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:9-293
               
               
               Cow position:chr14:9837905-9837620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):201, 127

               
               
               Conread position:9-296
               
               
               Cow position:chr14:3868440-3868156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-296
               
               
               Cow position:chr14:19129494-19129785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 84

               
               
               Conread position:9-296
               
               
               Cow position:chr14:32452237-32452530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-300
               
               
               Cow position:chr14:10858421-10858709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:9-307
               
               
               Cow position:chr14:36555163-36554866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-307
               
               
               Cow position:chr14:41325459-41325151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:9-308
               
               
               Cow position:chr14:47672893-47672597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:9-309
               
               
               Cow position:chr14:39434271-39433973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-315
               
               
               Cow position:chr14:24922088-24922399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:9-316
               
               
               Cow position:chr14:8101781-8102072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-317
               
               
               Cow position:chr14:8784184-8784470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):222, 68

               
               
               Conread position:9-317
               
               
               Cow position:chr14:9020014-9020321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 57

               
               
               Conread position:9-317
               
               
               Cow position:chr14:28304795-28304491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr14:13385356-13385669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-318
               
               
               Cow position:chr14:13809928-13810233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr14:19863445-19863145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr14:20600375-20600677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr14:22989022-22989330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr14:25403947-25403648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr14:26620598-26620915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr14:30661982-30662283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-318
               
               
               Cow position:chr14:35018765-35018460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr14:35381579-35381884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:9-318
               
               
               Cow position:chr14:36437498-36437188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr14:38144119-38143818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr14:38168680-38168979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):221, 96

               
               
               Conread position:9-318
               
               
               Cow position:chr14:38920940-38921233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr14:39618388-39618080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):181, 98

               
               
               Conread position:9-318
               
               
               Cow position:chr14:39778740-39779049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):205, 88

               
               
               Conread position:9-318
               
               
               Cow position:chr14:41471982-41471674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:9-318
               
               
               Cow position:chr14:41749771-41749468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-318
               
               
               Cow position:chr14:48740881-48740590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:9-325
               
               
               Cow position:chr14:10078256-10078560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-326
               
               
               Cow position:chr14:20010323-20010008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-326
               
               
               Cow position:chr14:45605082-45605393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-328
               
               
               Cow position:chr14:18657619-18657294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):129, 57

               
               
               Conread position:9-328
               
               
               Cow position:chr14:33714690-33714382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-329
               
               
               Cow position:chr14:19189032-19189346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-331
               
               
               Cow position:chr14:34083177-34082847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:9-331
               
               
               Cow position:chr14:45052431-45052747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr14:16237524-16237197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 97

               
               
               Conread position:9-332
               
               
               Cow position:chr14:35420776-35420447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):128, 90

               
               
               Conread position:9-332
               
               
               Cow position:chr14:37155865-37156178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr14:42784952-42785249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr14:43249576-43249894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):172, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr14:47584669-47584339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:9-333
               
               
               Cow position:chr14:14327128-14326793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:9-335
               
               
               Cow position:chr14:41809665-41809339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-346
               
               
               Cow position:chr14:23526926-23527261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 80

               
               
               Conread position:9-348
               
               
               Cow position:chr14:3564272-3564599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-351
               
               
               Cow position:chr14:8541224-8540885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-358
               
               
               Cow position:chr14:5630150-5630499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-364
               
               
               Cow position:chr14:1868395-1868065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-368
               
               
               Cow position:chr14:23107311-23107674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:9-368
               
               
               Cow position:chr14:26108620-26108985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:9-403
               
               
               Cow position:chr14:18309319-18308938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 176

               
               
               Conread position:9-413
               
               
               Cow position:chr14:33247441-33247043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr14:19618763-19618374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr14:21357546-21357947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr14:24416865-24417269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:9-415
               
               
               Cow position:chr14:25779090-25779481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 43

               
               
               Conread position:9-415
               
               
               Cow position:chr14:26116050-26116448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-415
               
               
               Cow position:chr14:28378347-28378746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:10-240
               
               
               Cow position:chr14:25002024-25002246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-250
               
               
               Cow position:chr14:23761862-23762102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):129, 9

               
               
               Conread position:10-263
               
               
               Cow position:chr14:20110733-20110479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-306
               
               
               Cow position:chr14:6541735-6541438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-318
               
               
               Cow position:chr14:22966744-22967047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:10-318
               
               
               Cow position:chr14:42596372-42596673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):161, 45

               
               
               Conread position:11-179
               
               
               Cow position:chr14:12954395-12954231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 91

               
               
               Conread position:11-203
               
               
               Cow position:chr14:33341744-33341934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:11-209
               
               
               Cow position:chr14:1859627-1859432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:11-235
               
               
               Cow position:chr14:1978081-1977874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:11-240
               
               
               Cow position:chr14:14182334-14182556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-264
               
               
               Cow position:chr14:39037214-39037471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:11-277
               
               
               Cow position:chr14:27591967-27591700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:11-279
               
               
               Cow position:chr14:1646193-1645932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:11-289
               
               
               Cow position:chr14:19372329-19372610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-290
               
               
               Cow position:chr14:11043501-11043222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-300
               
               
               Cow position:chr14:48689519-48689806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-307
               
               
               Cow position:chr14:37679014-37678713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-317
               
               
               Cow position:chr14:4990992-4991286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):236, 89

               
               
               Conread position:11-317
               
               
               Cow position:chr14:39807469-39807164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-318
               
               
               Cow position:chr14:11508245-11507947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:11-324
               
               
               Cow position:chr14:34199853-34199539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:11-326
               
               
               Cow position:chr14:21018103-21018415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:11-330
               
               
               Cow position:chr14:47027382-47027069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:11-332
               
               
               Cow position:chr14:41479672-41479349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:11-332
               
               
               Cow position:chr14:42330345-42330664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:11-332
               
               
               Cow position:chr14:47591924-47591611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:11-335
               
               
               Cow position:chr14:7290790-7291108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:11-368
               
               
               Cow position:chr14:12559492-12559138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 73

               
               
               Conread position:12-135
               
               
               Cow position:chr14:37901984-37902107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 92

               
               
               Conread position:13-318
               
               
               Cow position:chr14:41180720-41180420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 42

               
               
               Conread position:14-179
               
               
               Cow position:chr14:26222733-26222896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:14-260
               
               
               Cow position:chr14:37447470-37447240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:14-261
               
               
               Cow position:chr14:12324412-12324663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):118, 74

               
               
               Conread position:14-264
               
               
               Cow position:chr14:33643783-33643549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:14-279
               
               
               Cow position:chr14:34983863-34984121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 71

               
               
               Conread position:14-309
               
               
               Cow position:chr14:33538943-33538638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 212

               
               
               Conread position:14-330
               
               
               Cow position:chr14:31784957-31785281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-330
               
               
               Cow position:chr14:49021906-49021596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:14-332
               
               
               Cow position:chr14:44742388-44742077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-349
               
               
               Cow position:chr14:25231657-25231323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:14-353
               
               
               Cow position:chr14:33774054-33773722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:14-356
               
               
               Cow position:chr14:48412889-48412543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-381
               
               
               Cow position:chr14:25385893-25385533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:16-318
               
               
               Cow position:chr14:33828157-33828445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:16-318
               
               
               Cow position:chr14:46751667-46751969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):91, 59

               
               
               Conread position:19-279
               
               
               Cow position:chr14:11615223-11614964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):120, 55

               
               
               Conread position:19-290
               
               
               Cow position:chr14:37884412-37884143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:19-296
               
               
               Cow position:chr14:21691278-21691006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:19-316
               
               
               Cow position:chr14:17899480-17899778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:19-338
               
               
               Cow position:chr14:15514011-15514333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:20-277
               
               
               Cow position:chr14:6175583-6175838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:20-347
               
               
               Cow position:chr14:36289798-36289497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):168, 26

               
               
               Conread position:20-412
               
               
               Cow position:chr14:18238141-18238535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):217, 26

               
               
               Conread position:21-306
               
               
               Cow position:chr14:42154972-42154677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:21-318
               
               
               Cow position:chr14:9308230-9308521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:21-318
               
               
               Cow position:chr14:24236825-24237114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):165, 67

               
               
               Conread position:21-318
               
               
               Cow position:chr14:37131653-37131954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):111, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr14:50589401-50589096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:21-331
               
               
               Cow position:chr14:24684132-24683827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):116, 54

               
               
               Conread position:21-335
               
               
               Cow position:chr14:15054991-15054675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 58

               
               
               Conread position:21-364
               
               
               Cow position:chr14:41127893-41128232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:21-413
               
               
               Cow position:chr14:33326395-33326012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:21-415
               
               
               Cow position:chr14:13006504-13006889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):115, 41

               
               
               Conread position:22-318
               
               
               Cow position:chr14:37236508-37236773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:22-340
               
               
               Cow position:chr14:40165425-40165742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:22-364
               
               
               Cow position:chr14:14187333-14187675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:23-221
               
               
               Cow position:chr14:4877229-4877037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:23-318
               
               
               Cow position:chr14:36166940-36167229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:23-332
               
               
               Cow position:chr14:7558439-7558122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:23-332
               
               
               Cow position:chr14:31734853-31734543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):116, 54

               
               
               Conread position:23-332
               
               
               Cow position:chr14:44848370-44848075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):116, 49

               
               
               Conread position:23-335
               
               
               Cow position:chr14:28565615-28565924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:23-337
               
               
               Cow position:chr14:15032760-15033071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:24-317
               
               
               Cow position:chr14:18485251-18484946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:24-318
               
               
               Cow position:chr14:39770231-39769935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:24-326
               
               
               Cow position:chr14:10906716-10907021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:26-210
               
               
               Cow position:chr14:23080762-23080582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:26-290
               
               
               Cow position:chr14:35498500-35498233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:26-317
               
               
               Cow position:chr14:49563656-49563374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 29

               
               
               Conread position:26-318
               
               
               Cow position:chr14:4109487-4109177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:26-318
               
               
               Cow position:chr14:9901185-9901466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):216, 24

               
               
               Conread position:26-320
               
               
               Cow position:chr14:9875404-9875686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:26-329
               
               
               Cow position:chr14:26442338-26442031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 70

               
               
               Conread position:26-336
               
               
               Cow position:chr14:48427076-48427390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-415
               
               
               Cow position:chr14:22583154-22583523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):215, 62

               
               
               Conread position:26-415
               
               
               Cow position:chr14:41210860-41211254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:27-240
               
               
               Cow position:chr14:2975083-2974882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):160, 29

               
               
               Conread position:29-328
               
               
               Cow position:chr14:9255296-9255004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:30-229
               
               
               Cow position:chr14:41966253-41966442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:30-231
               
               
               Cow position:chr14:16256775-16256970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:30-315
               
               
               Cow position:chr14:24981464-24981747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-317
               
               
               Cow position:chr14:23712697-23712981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):204, 71

               
               
               Conread position:30-318
               
               
               Cow position:chr14:33791197-33791485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:30-331
               
               
               Cow position:chr14:27848207-27848509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:30-332
               
               
               Cow position:chr14:10697497-10697216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):162, 63

               
               
               Conread position:30-332
               
               
               Cow position:chr14:10702831-10702524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:30-332
               
               
               Cow position:chr14:43453171-43452870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):150, 62

               
               
               Conread position:31-318
               
               
               Cow position:chr14:18449004-18448711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:31-326
               
               
               Cow position:chr14:6529977-6530259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:31-332
               
               
               Cow position:chr14:18904600-18904298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:32-318
               
               
               Cow position:chr14:38296271-38295980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:33-332
               
               
               Cow position:chr14:28987711-28988001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):106, 47

               
               
               Conread position:34-250
               
               
               Cow position:chr14:14580882-14581093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:35-309
               
               
               Cow position:chr14:26448761-26449035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 50

               
               
               Conread position:35-310
               
               
               Cow position:chr14:34221067-34221342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):126, 53

               
               
               Conread position:35-317
               
               
               Cow position:chr14:35700438-35700726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:35-318
               
               
               Cow position:chr14:7959790-7960056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:36-295
               
               
               Cow position:chr14:20483442-20483194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:38-229
               
               
               Cow position:chr14:35819596-35819410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:38-314
               
               
               Cow position:chr14:41716134-41716399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:38-318
               
               
               Cow position:chr14:21284639-21284925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-326
               
               
               Cow position:chr14:7482073-7482359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:39-324
               
               
               Cow position:chr14:27988664-27988950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:40-290
               
               
               Cow position:chr14:8750090-8750343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 62

               
               
               Conread position:40-307
               
               
               Cow position:chr14:8964567-8964828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):193, 51

               
               
               Conread position:43-355
               
               
               Cow position:chr14:38379044-38379353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:44-263
               
               
               Cow position:chr14:24387470-24387692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:44-317
               
               
               Cow position:chr14:8754342-8754621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 175

               
               
               Conread position:44-360
               
               
               Cow position:chr14:33209328-33209021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:47-208
               
               
               Cow position:chr14:38673605-38673450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 8

               
               
               Conread position:47-219
               
               
               Cow position:chr14:23591260-23591425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:47-318
               
               
               Cow position:chr14:7270977-7270720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr14:11748882-11748626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:47-318
               
               
               Cow position:chr14:19221904-19222175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr14:24991848-24992108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:47-342
               
               
               Cow position:chr14:24580954-24581243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):165, 53

               
               
               Conread position:47-415
               
               
               Cow position:chr14:27312449-27312823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:49-291
               
               
               Cow position:chr14:39422565-39422319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:49-318
               
               
               Cow position:chr14:40347133-40346882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:49-330
               
               
               Cow position:chr14:46490231-46489948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:49-358
               
               
               Cow position:chr14:14280439-14280753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:50-332
               
               
               Cow position:chr14:35266984-35266704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:52-318
               
               
               Cow position:chr14:5835937-5836200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:55-200
               
               
               Cow position:chr14:37467728-37467588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-245
               
               
               Cow position:chr14:37435269-37435077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:55-318
               
               
               Cow position:chr14:11981671-11981949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:55-323
               
               
               Cow position:chr14:46782363-46782094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:56-210
               
               
               Cow position:chr14:19513378-19513236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:56-310
               
               
               Cow position:chr14:23464781-23464527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:57-415
               
               
               Cow position:chr14:28090939-28090590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:58-333
               
               
               Cow position:chr14:18345695-18345420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:62-311
               
               
               Cow position:chr14:24797537-24797291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:62-318
               
               
               Cow position:chr14:22381512-22381259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:62-324
               
               
               Cow position:chr14:37624447-37624186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:63-274
               
               
               Cow position:chr14:10721686-10721483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):76, 23

               
               
               Conread position:63-332
               
               
               Cow position:chr14:35544475-35544205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:67-318
               
               
               Cow position:chr14:15913509-15913258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 225

               
               
               Conread position:69-316
               
               
               Cow position:chr14:10912918-10912679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:71-237
               
               
               Cow position:chr14:38747713-38747873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:71-314
               
               
               Cow position:chr14:39926248-39926483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):153, 32

               
               
               Conread position:71-318
               
               
               Cow position:chr14:11820078-11819828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:77-263
               
               
               Cow position:chr14:42276993-42277179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 138

               
               
               Conread position:79-332
               
               
               Cow position:chr14:18941250-18940994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:79-354
               
               
               Cow position:chr14:45292868-45292589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:82-318
               
               
               Cow position:chr14:23154832-23154588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 48

               
               
               Conread position:82-326
               
               
               Cow position:chr14:4649954-4649712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):160, 31

               
               
               Conread position:82-336
               
               
               Cow position:chr14:50055446-50055715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:83-290
               
               
               Cow position:chr14:48399839-48400040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):166, 53

               
               
               Conread position:87-192
               
               
               Cow position:chr14:25462982-25462876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:87-415
               
               
               Cow position:chr14:27362098-27362432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 259

               
               
               Conread position:88-311
               
               
               Cow position:chr14:8495210-8495442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 218

               
               
               Conread position:88-411
               
               
               Cow position:chr14:31399636-31399963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:88-412
               
               
               Cow position:chr14:25458388-25458700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:89-318
               
               
               Cow position:chr14:35712118-35711884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:89-334
               
               
               Cow position:chr14:34163811-34163565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:91-318
               
               
               Cow position:chr14:12488636-12488406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:91-412
               
               
               Cow position:chr14:19957848-19957527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:92-262
               
               
               Cow position:chr14:22952929-22952758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-307
               
               
               Cow position:chr14:15518313-15518092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:92-318
               
               
               Cow position:chr14:29606169-29605941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 72

               
               
               Conread position:92-331
               
               
               Cow position:chr14:20932678-20932927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-350
               
               
               Cow position:chr14:44878722-44878458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-352
               
               
               Cow position:chr14:38406847-38406595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):225, 39

               
               
               Conread position:93-225
               
               
               Cow position:chr14:50518908-50518776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-331
               
               
               Cow position:chr14:43046213-43046453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:94-289
               
               
               Cow position:chr14:6419238-6419045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:94-318
               
               
               Cow position:chr14:12614029-12613807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:94-318
               
               
               Cow position:chr14:50027286-50027510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:95-303
               
               
               Cow position:chr14:34355627-34355421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 118

               
               
               Conread position:96-318
               
               
               Cow position:chr14:19633247-19633478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-334
               
               
               Cow position:chr14:3878524-3878764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:97-315
               
               
               Cow position:chr14:41756327-41756551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 143

               
               
               Conread position:98-332
               
               
               Cow position:chr14:5502091-5501842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:99-305
               
               
               Cow position:chr14:24786011-24786215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:100-415
               
               
               Cow position:chr14:42918161-42918483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 216

               
               
               Conread position:101-348
               
               
               Cow position:chr14:36151479-36151718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:104-316
               
               
               Cow position:chr14:19624161-19624384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:105-245
               
               
               Cow position:chr14:28924462-28924604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-311
               
               
               Cow position:chr14:43035961-43036167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:105-318
               
               
               Cow position:chr14:34395596-34395376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:105-330
               
               
               Cow position:chr14:6490631-6490396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:105-332
               
               
               Cow position:chr14:106500-106265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:105-335
               
               
               Cow position:chr14:20468028-20467800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:106-307
               
               
               Cow position:chr14:19975306-19975502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:106-317
               
               
               Cow position:chr14:31888624-31888411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:106-318
               
               
               Cow position:chr14:46965637-46965854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:106-342
               
               
               Cow position:chr14:40737591-40737357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:106-415
               
               
               Cow position:chr14:22909682-22909366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:109-307
               
               
               Cow position:chr14:21964199-21964405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-318
               
               
               Cow position:chr14:46735388-46735608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:112-335
               
               
               Cow position:chr14:7316911-7317149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:113-335
               
               
               Cow position:chr14:17013589-17013821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:113-415
               
               
               Cow position:chr14:10090636-10090943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 218

               
               
               Conread position:114-318
               
               
               Cow position:chr14:19996402-19996614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:115-332
               
               
               Cow position:chr14:39518782-39519005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:116-328
               
               
               Cow position:chr14:34020775-34020996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:117-305
               
               
               Cow position:chr14:41190787-41190597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:122-317
               
               
               Cow position:chr14:14466383-14466185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:123-332
               
               
               Cow position:chr14:20666929-20666715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 181

               
               
               Conread position:125-415
               
               
               Cow position:chr14:35651108-35650817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 158

               
               
               Conread position:126-415
               
               
               Cow position:chr14:24893854-24894142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 221

               
               
               Conread position:127-285
               
               
               Cow position:chr14:37138233-37138072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:127-327
               
               
               Cow position:chr14:11641471-11641270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:128-296
               
               
               Cow position:chr14:17397502-17397331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:129-318
               
               
               Cow position:chr14:37108807-37108615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:133-332
               
               
               Cow position:chr14:35607354-35607144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 181

               
               
               Conread position:134-318
               
               
               Cow position:chr14:25695486-25695676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:137-415
               
               
               Cow position:chr14:20745682-20745951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:138-296
               
               
               Cow position:chr14:47036686-47036526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:138-316
               
               
               Cow position:chr14:9029566-9029389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):159, 43

               
               
               Conread position:138-317
               
               
               Cow position:chr14:34330655-34330834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:145-342
               
               
               Cow position:chr14:33751640-33751830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:150-307
               
               
               Cow position:chr14:21534912-21534755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-316
               
               
               Cow position:chr14:45068967-45068793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:150-318
               
               
               Cow position:chr14:27866015-27865836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:152-333
               
               
               Cow position:chr14:36775730-36775911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:155-317
               
               
               Cow position:chr14:34329526-34329364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:155-376
               
               
               Cow position:chr14:33580737-33580952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:157-331
               
               
               Cow position:chr14:29300236-29300056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:161-335
               
               
               Cow position:chr14:13997582-13997405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:173-347
               
               
               Cow position:chr14:28605320-28605501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 137

               
               
               Conread position:181-307
               
               
               Cow position:chr14:19513222-19513092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr15:169664-169849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:1-217
               
               
               Cow position:chr15:10512247-10512034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:1-221
               
               
               Cow position:chr15:22930325-22930099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:1-229
               
               
               Cow position:chr15:5726350-5726573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-231
               
               
               Cow position:chr15:39619167-39619405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:1-247
               
               
               Cow position:chr15:35945555-35945787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):5, 90

               
               
               Conread position:1-273
               
               
               Cow position:chr15:19119585-19119314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:1-317
               
               
               Cow position:chr15:33303348-33303674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:1-318
               
               
               Cow position:chr15:21832411-21832082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-318
               
               
               Cow position:chr15:27247531-27247855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:1-318
               
               
               Cow position:chr15:30799919-30800224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:1-330
               
               
               Cow position:chr15:7192237-7191908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:1-331
               
               
               Cow position:chr15:32980008-32979679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:1-335
               
               
               Cow position:chr15:5984560-5984247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:1-368
               
               
               Cow position:chr15:6491566-6491197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:2-354
               
               
               Cow position:chr15:11011575-11011231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:3-192
               
               
               Cow position:chr15:16928065-16927887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):136, 80

               
               
               Conread position:3-292
               
               
               Cow position:chr15:31599362-31599651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 43

               
               
               Conread position:3-317
               
               
               Cow position:chr15:9178174-9177871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-318
               
               
               Cow position:chr15:6970016-6970326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):211, 81

               
               
               Conread position:3-318
               
               
               Cow position:chr15:22531696-22532003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):225, 26

               
               
               Conread position:3-318
               
               
               Cow position:chr15:37964562-37964883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:3-328
               
               
               Cow position:chr15:24977146-24976839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):228, 34

               
               
               Conread position:3-415
               
               
               Cow position:chr15:9072411-9072000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 274

               
               
               Conread position:5-318
               
               
               Cow position:chr15:7430001-7430323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:5-318
               
               
               Cow position:chr15:15215047-15215362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 69

               
               
               Conread position:6-303
               
               
               Cow position:chr15:12304670-12304968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:6-332
               
               
               Cow position:chr15:21389132-21388811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:6-337
               
               
               Cow position:chr15:6657130-6657466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:6-415
               
               
               Cow position:chr15:47892579-47892180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:7-209
               
               
               Cow position:chr15:4178911-4178708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:7-233
               
               
               Cow position:chr15:11559322-11559104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-235
               
               
               Cow position:chr15:11560482-11560256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:7-268
               
               
               Cow position:chr15:9526445-9526176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:7-293
               
               
               Cow position:chr15:11995994-11995708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:7-307
               
               
               Cow position:chr15:10088352-10088644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-310
               
               
               Cow position:chr15:27863294-27862991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):156, 84

               
               
               Conread position:7-316
               
               
               Cow position:chr15:33284910-33285222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-316
               
               
               Cow position:chr15:39599480-39599780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:7-318
               
               
               Cow position:chr15:3572667-3572362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:7-318
               
               
               Cow position:chr15:21366164-21365858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:7-318
               
               
               Cow position:chr15:27732444-27732740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):242, 55

               
               
               Conread position:7-318
               
               
               Cow position:chr15:37931726-37931427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:7-318
               
               
               Cow position:chr15:40343277-40343592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 91

               
               
               Conread position:7-318
               
               
               Cow position:chr15:45245511-45245208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:7-326
               
               
               Cow position:chr15:6647483-6647798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:7-330
               
               
               Cow position:chr15:33976662-33976339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:7-333
               
               
               Cow position:chr15:18720347-18720671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:7-335
               
               
               Cow position:chr15:26421565-26421240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:7-415
               
               
               Cow position:chr15:13387110-13387511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:7-415
               
               
               Cow position:chr15:15041389-15041004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:7-415
               
               
               Cow position:chr15:24045067-24044661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:7-415
               
               
               Cow position:chr15:42415287-42415697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):131, 57

               
               
               Conread position:8-236
               
               
               Cow position:chr15:12655882-12655656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:8-280
               
               
               Cow position:chr15:37777384-37777655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:8-332
               
               
               Cow position:chr15:16448717-16449060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 196

               
               
               Conread position:9-158
               
               
               Cow position:chr15:44250684-44250830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-172
               
               
               Cow position:chr15:35441043-35440884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-175
               
               
               Cow position:chr15:10660520-10660357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-176
               
               
               Cow position:chr15:36793459-36793297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:9-180
               
               
               Cow position:chr15:19950513-19950673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-185
               
               
               Cow position:chr15:6232979-6232811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:9-185
               
               
               Cow position:chr15:31928861-31928694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:9-187
               
               
               Cow position:chr15:34284375-34284205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-188
               
               
               Cow position:chr15:5717745-5717917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:9-196
               
               
               Cow position:chr15:33178391-33178209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:9-203
               
               
               Cow position:chr15:5158409-5158604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-203
               
               
               Cow position:chr15:43599224-43599408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-205
               
               
               Cow position:chr15:49273992-49274176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-209
               
               
               Cow position:chr15:4418365-4418172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-210
               
               
               Cow position:chr15:915808-915616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-210
               
               
               Cow position:chr15:9107069-9107266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-210
               
               
               Cow position:chr15:18671421-18671223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-218
               
               
               Cow position:chr15:12870829-12870626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-222
               
               
               Cow position:chr15:2141268-2141058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:9-233
               
               
               Cow position:chr15:9000986-9001213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-235
               
               
               Cow position:chr15:38837784-38838001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-236
               
               
               Cow position:chr15:10608271-10608049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-237
               
               
               Cow position:chr15:16657527-16657750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:9-240
               
               
               Cow position:chr15:41045441-41045662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 76

               
               
               Conread position:9-249
               
               
               Cow position:chr15:39316807-39316566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:9-252
               
               
               Cow position:chr15:21582889-21582648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:9-260
               
               
               Cow position:chr15:21821889-21821636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-261
               
               
               Cow position:chr15:16439796-16439540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:9-264
               
               
               Cow position:chr15:23114869-23115123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:9-264
               
               
               Cow position:chr15:33643125-33643374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-264
               
               
               Cow position:chr15:39436252-39436500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:9-266
               
               
               Cow position:chr15:2968372-2968623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:9-279
               
               
               Cow position:chr15:225769-225500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):171, 82

               
               
               Conread position:9-279
               
               
               Cow position:chr15:1722815-1722548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):140, 64

               
               
               Conread position:9-279
               
               
               Cow position:chr15:17353611-17353347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:9-282
               
               
               Cow position:chr15:27900475-27900198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-290
               
               
               Cow position:chr15:20391240-20390964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:9-291
               
               
               Cow position:chr15:26919240-26918956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-293
               
               
               Cow position:chr15:26903224-26903511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 83

               
               
               Conread position:9-293
               
               
               Cow position:chr15:47280104-47279833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-294
               
               
               Cow position:chr15:4919031-4918734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:9-294
               
               
               Cow position:chr15:12170279-12170564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):221, 47

               
               
               Conread position:9-296
               
               
               Cow position:chr15:35112848-35112568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:9-296
               
               
               Cow position:chr15:39598277-39598558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-296
               
               
               Cow position:chr15:43776387-43776659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 57

               
               
               Conread position:9-296
               
               
               Cow position:chr15:47843216-47842938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-296
               
               
               Cow position:chr15:50322629-50322915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-303
               
               
               Cow position:chr15:21907970-21908261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-306
               
               
               Cow position:chr15:16603860-16604150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:9-307
               
               
               Cow position:chr15:17233228-17233525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-307
               
               
               Cow position:chr15:22939290-22939002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-308
               
               
               Cow position:chr15:5632716-5633004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:9-308
               
               
               Cow position:chr15:27280906-27281196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:9-309
               
               
               Cow position:chr15:21420973-21421274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:9-314
               
               
               Cow position:chr15:17084244-17084550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:9-315
               
               
               Cow position:chr15:27973182-27972876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-315
               
               
               Cow position:chr15:32226837-32226547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):173, 88

               
               
               Conread position:9-316
               
               
               Cow position:chr15:13554388-13554681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-316
               
               
               Cow position:chr15:29810158-29810449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr15:794986-794671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr15:2953099-2952788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 145

               
               
               Conread position:9-318
               
               
               Cow position:chr15:4093898-4093583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr15:5234962-5234663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr15:5683180-5683476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr15:12785469-12785778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-318
               
               
               Cow position:chr15:16476704-16476402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr15:16639812-16640125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:9-318
               
               
               Cow position:chr15:17196183-17196487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr15:21608685-21608389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-318
               
               
               Cow position:chr15:21803622-21803315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr15:21893814-21894124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr15:21941810-21941507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 7

               
               
               Conread position:9-318
               
               
               Cow position:chr15:23568092-23567785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr15:25585055-25584747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-318
               
               
               Cow position:chr15:26404318-26404611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr15:34207152-34206855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr15:44640931-44641239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr15:45479037-45479349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-323
               
               
               Cow position:chr15:31857626-31857938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-325
               
               
               Cow position:chr15:17870249-17869945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:9-325
               
               
               Cow position:chr15:35642049-35642369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:9-326
               
               
               Cow position:chr15:30047511-30047186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:9-326
               
               
               Cow position:chr15:34140016-34140330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr15:47042594-47042287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):224, 70

               
               
               Conread position:9-327
               
               
               Cow position:chr15:36391709-36392018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr15:6462462-6462150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-328
               
               
               Cow position:chr15:42142894-42143205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):171, 83

               
               
               Conread position:9-331
               
               
               Cow position:chr15:52454468-52454802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:9-332
               
               
               Cow position:chr15:8962045-8962356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr15:13515401-13515725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-332
               
               
               Cow position:chr15:16583657-16583356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr15:23798495-23798163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:9-332
               
               
               Cow position:chr15:28924720-28924413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):172, 83

               
               
               Conread position:9-332
               
               
               Cow position:chr15:36259569-36259235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-333
               
               
               Cow position:chr15:18605442-18605741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 70

               
               
               Conread position:9-333
               
               
               Cow position:chr15:24941336-24941029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-335
               
               
               Cow position:chr15:144213-143872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:9-335
               
               
               Cow position:chr15:16307457-16307775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-335
               
               
               Cow position:chr15:43914060-43913725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:9-336
               
               
               Cow position:chr15:1330068-1329741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-338
               
               
               Cow position:chr15:46868680-46868350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-344
               
               
               Cow position:chr15:29604665-29604349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):238, 79

               
               
               Conread position:9-350
               
               
               Cow position:chr15:11658538-11658190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:9-352
               
               
               Cow position:chr15:1297774-1298112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:9-352
               
               
               Cow position:chr15:23768222-23767889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-354
               
               
               Cow position:chr15:286513-286836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-356
               
               
               Cow position:chr15:38883184-38883537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:9-358
               
               
               Cow position:chr15:24994478-24994146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-360
               
               
               Cow position:chr15:17100674-17100332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-397
               
               
               Cow position:chr15:20487168-20486800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 70

               
               
               Conread position:9-405
               
               
               Cow position:chr15:41000035-40999631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:9-414
               
               
               Cow position:chr15:18017964-18018352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:9-415
               
               
               Cow position:chr15:4788935-4788530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:9-415
               
               
               Cow position:chr15:6905568-6905983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):134, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr15:20351867-20352270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-415
               
               
               Cow position:chr15:20534415-20534019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):172, 91

               
               
               Conread position:9-415
               
               
               Cow position:chr15:38162034-38162439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:9-415
               
               
               Cow position:chr15:50302217-50302633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-435
               
               
               Cow position:chr15:24616606-24617014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:10-210
               
               
               Cow position:chr15:22553505-22553313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-235
               
               
               Cow position:chr15:32242014-32242233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:10-247
               
               
               Cow position:chr15:38877268-38877041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:10-250
               
               
               Cow position:chr15:23275578-23275803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-318
               
               
               Cow position:chr15:20472512-20472204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:10-318
               
               
               Cow position:chr15:40957615-40957921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:10-324
               
               
               Cow position:chr15:19280051-19279744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):129, 6

               
               
               Conread position:10-413
               
               
               Cow position:chr15:50957764-50957366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):129, 73

               
               
               Conread position:11-161
               
               
               Cow position:chr15:14176462-14176319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-222
               
               
               Cow position:chr15:5566961-5567184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:11-231
               
               
               Cow position:chr15:25906944-25907159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 168

               
               
               Conread position:11-294
               
               
               Cow position:chr15:12723126-12723404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:11-303
               
               
               Cow position:chr15:49922171-49922466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-307
               
               
               Cow position:chr15:37645028-37645300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):236, 34

               
               
               Conread position:11-316
               
               
               Cow position:chr15:15880963-15881273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-317
               
               
               Cow position:chr15:9494260-9493953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:11-317
               
               
               Cow position:chr15:21836720-21837030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-317
               
               
               Cow position:chr15:39621375-39621679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:11-318
               
               
               Cow position:chr15:9928396-9928698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr15:24797773-24797472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:11-318
               
               
               Cow position:chr15:39405779-39406076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:11-318
               
               
               Cow position:chr15:44051459-44051157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):203, 18

               
               
               Conread position:11-326
               
               
               Cow position:chr15:24285017-24285336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:11-332
               
               
               Cow position:chr15:20370418-20370111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:11-332
               
               
               Cow position:chr15:20459271-20458944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:11-332
               
               
               Cow position:chr15:23180477-23180778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):175, 61

               
               
               Conread position:11-333
               
               
               Cow position:chr15:10335792-10336108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:11-334
               
               
               Cow position:chr15:6565431-6565102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:11-335
               
               
               Cow position:chr15:45377-45060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:11-338
               
               
               Cow position:chr15:31616970-31616642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-341
               
               
               Cow position:chr15:39894624-39894943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 59

               
               
               Conread position:11-346
               
               
               Cow position:chr15:45322818-45323153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 86

               
               
               Conread position:11-364
               
               
               Cow position:chr15:4534946-4535295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:11-368
               
               
               Cow position:chr15:31545312-31544956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-380
               
               
               Cow position:chr15:8230530-8230174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 75

               
               
               Conread position:11-395
               
               
               Cow position:chr15:33624994-33625375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:274
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:11-409
               
               
               Cow position:chr15:7962114-7962513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:11-415
               
               
               Cow position:chr15:13285058-13285473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 406

               
               
               Conread position:12-338
               
               
               Cow position:chr15:18206474-18206149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:13-318
               
               
               Cow position:chr15:43626508-43626804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:14-235
               
               
               Cow position:chr15:4295803-4296019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:14-264
               
               
               Cow position:chr15:9970938-9970695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:14-273
               
               
               Cow position:chr15:1804295-1804031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):129, 58

               
               
               Conread position:14-317
               
               
               Cow position:chr15:40798387-40798085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:15-193
               
               
               Cow position:chr15:39326475-39326299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):124, 49

               
               
               Conread position:15-264
               
               
               Cow position:chr15:16667462-16667211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:15-264
               
               
               Cow position:chr15:23696870-23696629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 67

               
               
               Conread position:15-282
               
               
               Cow position:chr15:41225522-41225255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):215, 78

               
               
               Conread position:15-338
               
               
               Cow position:chr15:30820796-30820473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:15-415
               
               
               Cow position:chr15:10456974-10456569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:16-276
               
               
               Cow position:chr15:11646450-11646189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:16-317
               
               
               Cow position:chr15:22136725-22137024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):144, 77

               
               
               Conread position:16-362
               
               
               Cow position:chr15:20482805-20482451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:16-368
               
               
               Cow position:chr15:2210617-2210958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:16-368
               
               
               Cow position:chr15:2668947-2669295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:17-318
               
               
               Cow position:chr15:41620147-41619844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 6

               
               
               Conread position:18-266
               
               
               Cow position:chr15:36773654-36773404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:19-293
               
               
               Cow position:chr15:50177154-50177413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 65

               
               
               Conread position:20-331
               
               
               Cow position:chr15:1083330-1083025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:20-332
               
               
               Cow position:chr15:19186572-19186259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:20-415
               
               
               Cow position:chr15:43030981-43030591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:21-235
               
               
               Cow position:chr15:53045832-53045624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-240
               
               
               Cow position:chr15:23572639-23572419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):118, 52

               
               
               Conread position:21-318
               
               
               Cow position:chr15:16543400-16543122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr15:51427779-51427481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:21-332
               
               
               Cow position:chr15:36782278-36781976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:22-291
               
               
               Cow position:chr15:50946907-50947166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):174, 57

               
               
               Conread position:22-293
               
               
               Cow position:chr15:14856419-14856160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):159, 71

               
               
               Conread position:22-318
               
               
               Cow position:chr15:5727698-5727980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:22-318
               
               
               Cow position:chr15:43827724-43827430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):117, 75

               
               
               Conread position:23-311
               
               
               Cow position:chr15:37381673-37381966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:23-318
               
               
               Cow position:chr15:4138181-4138478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 66

               
               
               Conread position:23-326
               
               
               Cow position:chr15:33306159-33306457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:23-332
               
               
               Cow position:chr15:37716884-37716567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:24-235
               
               
               Cow position:chr15:16946770-16946567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:24-316
               
               
               Cow position:chr15:47821865-47822138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):115, 53

               
               
               Conread position:24-318
               
               
               Cow position:chr15:26912025-26911739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 6

               
               
               Conread position:26-240
               
               
               Cow position:chr15:43750547-43750774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:26-278
               
               
               Cow position:chr15:24305430-24305176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-315
               
               
               Cow position:chr15:5729990-5730276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:26-326
               
               
               Cow position:chr15:3700235-3699932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:26-330
               
               
               Cow position:chr15:9871365-9871057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:26-332
               
               
               Cow position:chr15:6331987-6331702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):161, 78

               
               
               Conread position:26-415
               
               
               Cow position:chr15:34104309-34104697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 198

               
               
               Conread position:29-326
               
               
               Cow position:chr15:16616241-16616544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:29-332
               
               
               Cow position:chr15:43248720-43248415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:29-394
               
               
               Cow position:chr15:36043168-36043534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:30-245
               
               
               Cow position:chr15:32324152-32323940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-270
               
               
               Cow position:chr15:31137410-31137179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:30-280
               
               
               Cow position:chr15:53036915-53036676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-309
               
               
               Cow position:chr15:16822991-16823269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-318
               
               
               Cow position:chr15:33604991-33605263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):203, 37

               
               
               Conread position:30-326
               
               
               Cow position:chr15:5535811-5536099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:30-330
               
               
               Cow position:chr15:40009598-40009296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:30-413
               
               
               Cow position:chr15:25667166-25666786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:33-332
               
               
               Cow position:chr15:36621469-36621774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:34-331
               
               
               Cow position:chr15:15573766-15573467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):133, 11

               
               
               Conread position:35-318
               
               
               Cow position:chr15:52740065-52739782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:35-329
               
               
               Cow position:chr15:35041817-35041517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:35-370
               
               
               Cow position:chr15:19771193-19771525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:37-311
               
               
               Cow position:chr15:15708049-15707785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:38-231
               
               
               Cow position:chr15:12441761-12441574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-285
               
               
               Cow position:chr15:6168472-6168206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:38-305
               
               
               Cow position:chr15:47105105-47105365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:38-315
               
               
               Cow position:chr15:44256541-44256816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:38-317
               
               
               Cow position:chr15:25111108-25110824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-332
               
               
               Cow position:chr15:22751516-22751807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 43

               
               
               Conread position:40-318
               
               
               Cow position:chr15:6586651-6586371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:40-318
               
               
               Cow position:chr15:46610998-46611260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):146, 53

               
               
               Conread position:40-322
               
               
               Cow position:chr15:16936782-16936511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 61

               
               
               Conread position:43-264
               
               
               Cow position:chr15:4350534-4350312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:43-294
               
               
               Cow position:chr15:26752928-26752694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:44-199
               
               
               Cow position:chr15:36725108-36724961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:44-290
               
               
               Cow position:chr15:10845789-10846036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:44-415
               
               
               Cow position:chr15:5498964-5498598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:45-291
               
               
               Cow position:chr15:50341183-50341430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:45-328
               
               
               Cow position:chr15:11363104-11362830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:45-333
               
               
               Cow position:chr15:13684197-13683927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:47-222
               
               
               Cow position:chr15:5691461-5691624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:47-231
               
               
               Cow position:chr15:23927401-23927219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:47-303
               
               
               Cow position:chr15:34145081-34144828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:47-318
               
               
               Cow position:chr15:6046243-6045972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:55-294
               
               
               Cow position:chr15:22886628-22886867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-317
               
               
               Cow position:chr15:37632803-37632534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-318
               
               
               Cow position:chr15:22713753-22713488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:55-332
               
               
               Cow position:chr15:23775858-23775605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:55-334
               
               
               Cow position:chr15:37985469-37985203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):184, 38

               
               
               Conread position:56-238
               
               
               Cow position:chr15:33770695-33770875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:56-305
               
               
               Cow position:chr15:11629804-11629553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:57-311
               
               
               Cow position:chr15:21522869-21523125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:57-318
               
               
               Cow position:chr15:7750054-7749804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:62-333
               
               
               Cow position:chr15:22531150-22531418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):187, 26

               
               
               Conread position:63-405
               
               
               Cow position:chr15:24038313-24037989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:64-338
               
               
               Cow position:chr15:12316016-12316286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:65-205
               
               
               Cow position:chr15:31502720-31502578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:71-202
               
               
               Cow position:chr15:1542667-1542801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:74-326
               
               
               Cow position:chr15:1830654-1830916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:74-333
               
               
               Cow position:chr15:31949085-31949357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:79-258
               
               
               Cow position:chr15:7535572-7535386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:79-318
               
               
               Cow position:chr15:4485237-4485486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:82-368
               
               
               Cow position:chr15:14020571-14020863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:83-326
               
               
               Cow position:chr15:14870845-14871097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:87-326
               
               
               Cow position:chr15:19403084-19403327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 216

               
               
               Conread position:87-328
               
               
               Cow position:chr15:45216927-45217172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:87-332
               
               
               Cow position:chr15:28126941-28126693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:87-343
               
               
               Cow position:chr15:33678809-33679062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:89-318
               
               
               Cow position:chr15:10615623-10615399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):204, 8

               
               
               Conread position:89-341
               
               
               Cow position:chr15:14322947-14322698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:89-383
               
               
               Cow position:chr15:48486743-48487043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:89-415
               
               
               Cow position:chr15:33680760-33681088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:91-318
               
               
               Cow position:chr15:7827928-7827696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):48, 227

               
               
               Conread position:91-318
               
               
               Cow position:chr15:47990656-47990420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:91-415
               
               
               Cow position:chr15:4373585-4373906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:92-296
               
               
               Cow position:chr15:22095234-22095441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:92-318
               
               
               Cow position:chr15:36422768-36422997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):141, 48

               
               
               Conread position:92-318
               
               
               Cow position:chr15:38846213-38846438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:92-318
               
               
               Cow position:chr15:53402881-53402660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:92-358
               
               
               Cow position:chr15:32287645-32287376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:94-352
               
               
               Cow position:chr15:23791570-23791833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:96-332
               
               
               Cow position:chr15:38898534-38898781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:97-296
               
               
               Cow position:chr15:26701962-26701756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:97-317
               
               
               Cow position:chr15:53680647-53680427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:98-245
               
               
               Cow position:chr15:23957819-23957968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:99-311
               
               
               Cow position:chr15:30001804-30002024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:101-245
               
               
               Cow position:chr15:17859118-17858969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:101-315
               
               
               Cow position:chr15:41583030-41583249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-318
               
               
               Cow position:chr15:29792790-29792570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:102-303
               
               
               Cow position:chr15:38394539-38394747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:104-284
               
               
               Cow position:chr15:15025530-15025712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 147

               
               
               Conread position:105-275
               
               
               Cow position:chr15:5071975-5071801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 50

               
               
               Conread position:105-316
               
               
               Cow position:chr15:5571515-5571296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-411
               
               
               Cow position:chr15:22168181-22168490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 236

               
               
               Conread position:105-415
               
               
               Cow position:chr15:49738922-49738616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:106-331
               
               
               Cow position:chr15:44797652-44797880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:106-332
               
               
               Cow position:chr15:22532362-22532597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-332
               
               
               Cow position:chr15:26079237-26079014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:107-332
               
               
               Cow position:chr15:53183452-53183223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-415
               
               
               Cow position:chr15:9642555-9642879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 175

               
               
               Conread position:108-318
               
               
               Cow position:chr15:24128777-24128991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:108-326
               
               
               Cow position:chr15:9267930-9267714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:108-328
               
               
               Cow position:chr15:17683154-17683380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:108-328
               
               
               Cow position:chr15:25208636-25208412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:108-331
               
               
               Cow position:chr15:23702901-23703128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:109-315
               
               
               Cow position:chr15:10245877-10245670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:114-331
               
               
               Cow position:chr15:51831465-51831237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:114-415
               
               
               Cow position:chr15:6082511-6082212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:115-338
               
               
               Cow position:chr15:6282798-6282576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:117-296
               
               
               Cow position:chr15:14259791-14259615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:117-344
               
               
               Cow position:chr15:9062460-9062226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:123-318
               
               
               Cow position:chr15:26896567-26896370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:124-335
               
               
               Cow position:chr15:47634230-47634444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:126-328
               
               
               Cow position:chr15:30982069-30982270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:129-305
               
               
               Cow position:chr15:52683317-52683498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:129-316
               
               
               Cow position:chr15:10283845-10284034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:129-335
               
               
               Cow position:chr15:19781692-19781893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:130-357
               
               
               Cow position:chr15:38732488-38732252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:131-310
               
               
               Cow position:chr15:26158467-26158284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):9, 172

               
               
               Conread position:131-318
               
               
               Cow position:chr15:12837170-12836978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:133-317
               
               
               Cow position:chr15:13669748-13669563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:137-356
               
               
               Cow position:chr15:21802017-21801791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):18, 193

               
               
               Conread position:138-316
               
               
               Cow position:chr15:14505583-14505767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:138-412
               
               
               Cow position:chr15:34255586-34255315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:142-318
               
               
               Cow position:chr15:18284398-18284583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 166

               
               
               Conread position:150-415
               
               
               Cow position:chr15:28038926-28039183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 149

               
               
               Conread position:150-415
               
               
               Cow position:chr15:31085705-31085981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:151-413
               
               
               Cow position:chr15:5658330-5658591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:155-354
               
               
               Cow position:chr15:19725566-19725362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:156-330
               
               
               Cow position:chr15:22606985-22607161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:156-368
               
               
               Cow position:chr15:50964437-50964660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:164-330
               
               
               Cow position:chr15:36618358-36618532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:173-337
               
               
               Cow position:chr15:53231661-53231826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 40

               
               
               Conread position:175-329
               
               
               Cow position:chr15:29861554-29861713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:179-318
               
               
               Cow position:chr15:29542195-29542339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 125

               
               
               Conread position:181-415
               
               
               Cow position:chr15:12359446-12359688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:183-342
               
               
               Cow position:chr15:52982017-52982182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:189-373
               
               
               Cow position:chr15:47340338-47340520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr16:9161147-9160966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:1-227
               
               
               Cow position:chr16:29712484-29712262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:1-231
               
               
               Cow position:chr16:45693211-45692983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:1-247
               
               
               Cow position:chr16:38119387-38119622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):137, 83

               
               
               Conread position:1-249
               
               
               Cow position:chr16:6887385-6887624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:1-279
               
               
               Cow position:chr16:50383283-50382988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 195

               
               
               Conread position:1-285
               
               
               Cow position:chr16:594159-594449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:1-289
               
               
               Cow position:chr16:15504455-15504750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:1-305
               
               
               Cow position:chr16:53048617-53048311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-318
               
               
               Cow position:chr16:4698924-4699222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:1-325
               
               
               Cow position:chr16:16597622-16597302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:1-326
               
               
               Cow position:chr16:53627365-53627684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 89

               
               
               Conread position:1-330
               
               
               Cow position:chr16:51112815-51113141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:1-332
               
               
               Cow position:chr16:14361168-14360840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:1-333
               
               
               Cow position:chr16:4499494-4499173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:1-333
               
               
               Cow position:chr16:23483347-23483020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-343
               
               
               Cow position:chr16:37117139-37116797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:1-415
               
               
               Cow position:chr16:34210339-34210755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:1-415
               
               
               Cow position:chr16:42969861-42970273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:2-317
               
               
               Cow position:chr16:19152757-19152445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:3-221
               
               
               Cow position:chr16:52222268-52222480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-279
               
               
               Cow position:chr16:26156079-26156349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:3-333
               
               
               Cow position:chr16:51869700-51869370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 85

               
               
               Conread position:3-415
               
               
               Cow position:chr16:22841996-22842411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 97

               
               
               Conread position:4-332
               
               
               Cow position:chr16:53224748-53225072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:6-413
               
               
               Cow position:chr16:42217632-42218033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):133, 83

               
               
               Conread position:7-222
               
               
               Cow position:chr16:6319260-6319045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:7-241
               
               
               Cow position:chr16:46627784-46628007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):232, 45

               
               
               Conread position:7-245
               
               
               Cow position:chr16:20205518-20205281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-248
               
               
               Cow position:chr16:8076445-8076687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-250
               
               
               Cow position:chr16:38621012-38620782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-260
               
               
               Cow position:chr16:45457019-45456761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:7-264
               
               
               Cow position:chr16:17626986-17626731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-264
               
               
               Cow position:chr16:42752907-42752661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:7-293
               
               
               Cow position:chr16:54664744-54665031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:7-296
               
               
               Cow position:chr16:19670296-19670563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):225, 80

               
               
               Conread position:7-296
               
               
               Cow position:chr16:30036934-30037225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:7-309
               
               
               Cow position:chr16:4981320-4981613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:7-314
               
               
               Cow position:chr16:50282375-50282680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:7-316
               
               
               Cow position:chr16:8522333-8522638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:7-316
               
               
               Cow position:chr16:33704862-33704547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:7-317
               
               
               Cow position:chr16:23738238-23737932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 96

               
               
               Conread position:7-318
               
               
               Cow position:chr16:4059413-4059106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:7-318
               
               
               Cow position:chr16:13611397-13611698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-318
               
               
               Cow position:chr16:22804541-22804834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:7-318
               
               
               Cow position:chr16:24702908-24702599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 43

               
               
               Conread position:7-318
               
               
               Cow position:chr16:29655382-29655072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:7-318
               
               
               Cow position:chr16:47343532-47343220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:7-318
               
               
               Cow position:chr16:47820624-47820318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):207, 23

               
               
               Conread position:7-318
               
               
               Cow position:chr16:53813596-53813912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 59

               
               
               Conread position:7-318
               
               
               Cow position:chr16:53891729-53892034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:7-330
               
               
               Cow position:chr16:43505754-43506063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 25

               
               
               Conread position:7-332
               
               
               Cow position:chr16:23729867-23730203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 89

               
               
               Conread position:7-340
               
               
               Cow position:chr16:42733954-42734268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:7-352
               
               
               Cow position:chr16:4979859-4979529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 81

               
               
               Conread position:7-356
               
               
               Cow position:chr16:23681419-23681081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 14

               
               
               Conread position:7-415
               
               
               Cow position:chr16:4971970-4972367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 81

               
               
               Conread position:8-178
               
               
               Cow position:chr16:43674929-43674766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):59, 41

               
               
               Conread position:8-186
               
               
               Cow position:chr16:18052387-18052214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:8-235
               
               
               Cow position:chr16:10650832-10651056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:8-292
               
               
               Cow position:chr16:14758791-14758502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:8-296
               
               
               Cow position:chr16:11274959-11274678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):216, 71

               
               
               Conread position:8-353
               
               
               Cow position:chr16:13181794-13181452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):156, 54

               
               
               Conread position:9-135
               
               
               Cow position:chr16:42433056-42433180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-137
               
               
               Cow position:chr16:26030829-26030951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-137
               
               
               Cow position:chr16:55968497-55968367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-173
               
               
               Cow position:chr16:44428938-44428782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-174
               
               
               Cow position:chr16:30186700-30186539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-186
               
               
               Cow position:chr16:21317538-21317712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-187
               
               
               Cow position:chr16:56796611-56796782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-198
               
               
               Cow position:chr16:23955777-23955955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-202
               
               
               Cow position:chr16:7583452-7583264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-204
               
               
               Cow position:chr16:14699973-14699784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-208
               
               
               Cow position:chr16:8448599-8448783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:9-209
               
               
               Cow position:chr16:54225464-54225646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:9-210
               
               
               Cow position:chr16:19047379-19047578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-229
               
               
               Cow position:chr16:22380301-22380515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-233
               
               
               Cow position:chr16:38243608-38243826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:9-234
               
               
               Cow position:chr16:35297132-35296908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:9-236
               
               
               Cow position:chr16:7550023-7549801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-236
               
               
               Cow position:chr16:47854994-47854775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):175, 16

               
               
               Conread position:9-240
               
               
               Cow position:chr16:7442046-7442273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-240
               
               
               Cow position:chr16:14974489-14974703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:9-240
               
               
               Cow position:chr16:17945576-17945349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-240
               
               
               Cow position:chr16:22808503-22808722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:9-240
               
               
               Cow position:chr16:52133462-52133686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:9-245
               
               
               Cow position:chr16:17289002-17288765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-245
               
               
               Cow position:chr16:34153516-34153750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-252
               
               
               Cow position:chr16:33198384-33198617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:9-256
               
               
               Cow position:chr16:41689748-41689516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-256
               
               
               Cow position:chr16:46433270-46433514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:9-259
               
               
               Cow position:chr16:6344387-6344633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-261
               
               
               Cow position:chr16:41530245-41530487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-264
               
               
               Cow position:chr16:39238001-39237744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-265
               
               
               Cow position:chr16:16552616-16552362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:9-266
               
               
               Cow position:chr16:14685338-14685590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-275
               
               
               Cow position:chr16:8065833-8066091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-277
               
               
               Cow position:chr16:22860714-22860971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-279
               
               
               Cow position:chr16:10032694-10032414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:9-279
               
               
               Cow position:chr16:22773034-22772754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:9-279
               
               
               Cow position:chr16:27261896-27262159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:9-280
               
               
               Cow position:chr16:10592486-10592225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-283
               
               
               Cow position:chr16:13232894-13233163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-283
               
               
               Cow position:chr16:43800862-43801127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-290
               
               
               Cow position:chr16:24747341-24747084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-293
               
               
               Cow position:chr16:5896474-5896191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 41

               
               
               Conread position:9-294
               
               
               Cow position:chr16:43308506-43308798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-294
               
               
               Cow position:chr16:50289207-50288928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-295
               
               
               Cow position:chr16:25839675-25839387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-296
               
               
               Cow position:chr16:8322927-8323219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-296
               
               
               Cow position:chr16:14106697-14106416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:9-296
               
               
               Cow position:chr16:15824390-15824673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-296
               
               
               Cow position:chr16:26676631-26676921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:9-296
               
               
               Cow position:chr16:56082310-56082591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-303
               
               
               Cow position:chr16:49229713-49230006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 63

               
               
               Conread position:9-305
               
               
               Cow position:chr16:7152116-7152414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-309
               
               
               Cow position:chr16:14568434-14568728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-310
               
               
               Cow position:chr16:29557576-29557876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-310
               
               
               Cow position:chr16:56875609-56875898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):180, 44

               
               
               Conread position:9-311
               
               
               Cow position:chr16:45702917-45703222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-314
               
               
               Cow position:chr16:20476586-20476287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-314
               
               
               Cow position:chr16:37380325-37380022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:9-315
               
               
               Cow position:chr16:43661505-43661203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):87, 138

               
               
               Conread position:9-316
               
               
               Cow position:chr16:11008400-11008093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-316
               
               
               Cow position:chr16:22850380-22850078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):126, 29

               
               
               Conread position:9-316
               
               
               Cow position:chr16:40562287-40561975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-316
               
               
               Cow position:chr16:42633689-42633999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:9-316
               
               
               Cow position:chr16:48493235-48492935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr16:4626336-4626646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):219, 83

               
               
               Conread position:9-317
               
               
               Cow position:chr16:5726988-5726677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:9-317
               
               
               Cow position:chr16:8279737-8280041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):221, 21

               
               
               Conread position:9-317
               
               
               Cow position:chr16:13195284-13195585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr16:18353903-18354203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 29

               
               
               Conread position:9-317
               
               
               Cow position:chr16:37452559-37452868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr16:48095710-48096015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-318
               
               
               Cow position:chr16:3246150-3246445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 74

               
               
               Conread position:9-318
               
               
               Cow position:chr16:5363956-5363639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:9-318
               
               
               Cow position:chr16:7136290-7136605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr16:7456407-7456719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr16:8315138-8315427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr16:8933373-8933672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr16:9933213-9932903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr16:13689721-13689410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr16:13752077-13752376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr16:15370741-15370427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr16:15809033-15808721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr16:18037002-18036713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr16:18141272-18141582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-318
               
               
               Cow position:chr16:23871595-23871903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:9-318
               
               
               Cow position:chr16:25170448-25170138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr16:25965554-25965253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:9-318
               
               
               Cow position:chr16:26649574-26649886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr16:28833898-28833589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr16:33482501-33482185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:9-318
               
               
               Cow position:chr16:35195558-35195863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr16:39165294-39164993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-318
               
               
               Cow position:chr16:42257503-42257202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr16:45731332-45731625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr16:46655339-46655029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr16:47245644-47245335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr16:48340639-48340945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr16:56231882-56231570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-324
               
               
               Cow position:chr16:5725522-5725215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 91

               
               
               Conread position:9-326
               
               
               Cow position:chr16:17745891-17745573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 75

               
               
               Conread position:9-326
               
               
               Cow position:chr16:24672303-24672620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 17

               
               
               Conread position:9-326
               
               
               Cow position:chr16:34168641-34168334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-326
               
               
               Cow position:chr16:39394624-39394316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):210, 68

               
               
               Conread position:9-326
               
               
               Cow position:chr16:42242062-42242379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-328
               
               
               Cow position:chr16:5257051-5256740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:9-328
               
               
               Cow position:chr16:5477304-5477610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):151, 26

               
               
               Conread position:9-329
               
               
               Cow position:chr16:8025800-8026107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-330
               
               
               Cow position:chr16:33508127-33507798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:9-331
               
               
               Cow position:chr16:2223342-2223673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:9-331
               
               
               Cow position:chr16:5845725-5845405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:9-331
               
               
               Cow position:chr16:7499105-7498803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-331
               
               
               Cow position:chr16:30515534-30515846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-331
               
               
               Cow position:chr16:32587259-32586933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:9-331
               
               
               Cow position:chr16:33646070-33645748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:9-331
               
               
               Cow position:chr16:35758257-35757948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):240, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr16:601001-600678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-332
               
               
               Cow position:chr16:13698570-13698241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr16:15762101-15762430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:9-332
               
               
               Cow position:chr16:24826128-24825800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr16:29095976-29095687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr16:39646600-39646293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr16:55683353-55683026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:9-333
               
               
               Cow position:chr16:21450902-21450580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-333
               
               
               Cow position:chr16:30715559-30715224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:9-333
               
               
               Cow position:chr16:52790110-52789794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):222, 82

               
               
               Conread position:9-334
               
               
               Cow position:chr16:13306817-13307132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 61

               
               
               Conread position:9-334
               
               
               Cow position:chr16:16402272-16402596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-334
               
               
               Cow position:chr16:20633823-20634139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-334
               
               
               Cow position:chr16:42092332-42092645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:9-335
               
               
               Cow position:chr16:7077688-7078008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-336
               
               
               Cow position:chr16:23564187-23563863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-337
               
               
               Cow position:chr16:44744078-44744404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-339
               
               
               Cow position:chr16:32327713-32327381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:9-339
               
               
               Cow position:chr16:48385348-48385675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-340
               
               
               Cow position:chr16:20025496-20025167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-354
               
               
               Cow position:chr16:26372895-26373239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-361
               
               
               Cow position:chr16:5636639-5636293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:9-370
               
               
               Cow position:chr16:8366776-8367132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:9-396
               
               
               Cow position:chr16:53086286-53086654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 43

               
               
               Conread position:9-412
               
               
               Cow position:chr16:41752522-41752921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-413
               
               
               Cow position:chr16:7665692-7665287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-414
               
               
               Cow position:chr16:11102766-11103178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-414
               
               
               Cow position:chr16:16548668-16548267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-415
               
               
               Cow position:chr16:3634171-3633774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):76, 68

               
               
               Conread position:9-415
               
               
               Cow position:chr16:7505144-7504758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr16:9497213-9497615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:9-415
               
               
               Cow position:chr16:19643944-19643553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:9-415
               
               
               Cow position:chr16:31122195-31122596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:267
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:9-415
               
               
               Cow position:chr16:40333270-40333663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:9-415
               
               
               Cow position:chr16:46552849-46552465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-415
               
               
               Cow position:chr16:49169326-49169721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr16:54287920-54287533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:9-416
               
               
               Cow position:chr16:4910470-4910871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:9-416
               
               
               Cow position:chr16:18206014-18205618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:10-210
               
               
               Cow position:chr16:54342038-54341847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:10-235
               
               
               Cow position:chr16:38191527-38191306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 94

               
               
               Conread position:10-235
               
               
               Cow position:chr16:50521531-50521312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:10-264
               
               
               Cow position:chr16:56787722-56787977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-277
               
               
               Cow position:chr16:26702860-26703126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 69

               
               
               Conread position:10-282
               
               
               Cow position:chr16:21905216-21904945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:10-291
               
               
               Cow position:chr16:53595471-53595748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:10-293
               
               
               Cow position:chr16:41590831-41590551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):129, 114

               
               
               Conread position:10-310
               
               
               Cow position:chr16:49125479-49125765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:10-318
               
               
               Cow position:chr16:8959002-8959316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:10-318
               
               
               Cow position:chr16:35343419-35343728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 68

               
               
               Conread position:10-318
               
               
               Cow position:chr16:42778018-42777710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:10-318
               
               
               Cow position:chr16:48494500-48494809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-326
               
               
               Cow position:chr16:48086814-48087131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):129, 76

               
               
               Conread position:10-361
               
               
               Cow position:chr16:48006439-48006787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:10-415
               
               
               Cow position:chr16:8840946-8840550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:11-212
               
               
               Cow position:chr16:27160811-27160998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-227
               
               
               Cow position:chr16:33595884-33596095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-264
               
               
               Cow position:chr16:52275076-52275329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 90

               
               
               Conread position:11-268
               
               
               Cow position:chr16:11957525-11957787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:11-275
               
               
               Cow position:chr16:12633937-12633683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:11-278
               
               
               Cow position:chr16:42444209-42443940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:11-287
               
               
               Cow position:chr16:28396028-28396317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 242

               
               
               Conread position:11-287
               
               
               Cow position:chr16:52636331-52636604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:11-289
               
               
               Cow position:chr16:17142987-17142708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:11-304
               
               
               Cow position:chr16:36203565-36203854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:11-304
               
               
               Cow position:chr16:45047581-45047862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:11-315
               
               
               Cow position:chr16:23058383-23058686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:11-316
               
               
               Cow position:chr16:4902641-4902351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-316
               
               
               Cow position:chr16:9729248-9728953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-316
               
               
               Cow position:chr16:38905181-38905477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-316
               
               
               Cow position:chr16:50688574-50688275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 63

               
               
               Conread position:11-318
               
               
               Cow position:chr16:23472802-23472497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-318
               
               
               Cow position:chr16:31978133-31978441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:11-318
               
               
               Cow position:chr16:51069860-51070182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:11-324
               
               
               Cow position:chr16:26610692-26610375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):170, 66

               
               
               Conread position:11-325
               
               
               Cow position:chr16:5415708-5416013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:11-328
               
               
               Cow position:chr16:16265048-16265362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:11-332
               
               
               Cow position:chr16:42078795-42079106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:11-332
               
               
               Cow position:chr16:49126135-49126450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:11-335
               
               
               Cow position:chr16:820303-819981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-340
               
               
               Cow position:chr16:52889357-52889685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:11-354
               
               
               Cow position:chr16:14242422-14242086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-405
               
               
               Cow position:chr16:46452690-46453095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 130

               
               
               Conread position:11-415
               
               
               Cow position:chr16:17606351-17605947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):100, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr16:53508932-53509330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:12-232
               
               
               Cow position:chr16:27723276-27723053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:12-316
               
               
               Cow position:chr16:18402739-18402445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:12-326
               
               
               Cow position:chr16:30143154-30143473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:12-415
               
               
               Cow position:chr16:35188305-35187912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:13-293
               
               
               Cow position:chr16:12360925-12361202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):126, 12

               
               
               Conread position:13-332
               
               
               Cow position:chr16:9973448-9973769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:13-340
               
               
               Cow position:chr16:9235428-9235754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):109, 43

               
               
               Conread position:14-203
               
               
               Cow position:chr16:40446311-40446118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:14-213
               
               
               Cow position:chr16:56565646-56565452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:14-245
               
               
               Cow position:chr16:21369534-21369304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:14-247
               
               
               Cow position:chr16:49404109-49404328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:14-278
               
               
               Cow position:chr16:52854982-52855233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):126, 71

               
               
               Conread position:14-290
               
               
               Cow position:chr16:43105465-43105738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):125, 64

               
               
               Conread position:14-293
               
               
               Cow position:chr16:18757789-18758072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:14-315
               
               
               Cow position:chr16:13969320-13969629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:14-318
               
               
               Cow position:chr16:53553669-53553970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-324
               
               
               Cow position:chr16:11775002-11775310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-324
               
               
               Cow position:chr16:48398204-48398504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):195, 63

               
               
               Conread position:14-331
               
               
               Cow position:chr16:33299444-33299125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:14-332
               
               
               Cow position:chr16:54298518-54298213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:14-415
               
               
               Cow position:chr16:4145113-4144718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:15-293
               
               
               Cow position:chr16:10148331-10148053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 57

               
               
               Conread position:15-318
               
               
               Cow position:chr16:7429428-7429125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):124, 77

               
               
               Conread position:17-330
               
               
               Cow position:chr16:43276065-43275757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:18-318
               
               
               Cow position:chr16:3614792-3614495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:19-228
               
               
               Cow position:chr16:12274115-12273909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:19-318
               
               
               Cow position:chr16:11643395-11643105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:19-328
               
               
               Cow position:chr16:23066704-23066405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:19-331
               
               
               Cow position:chr16:15960245-15960560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 78

               
               
               Conread position:19-415
               
               
               Cow position:chr16:18427229-18426839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:20-277
               
               
               Cow position:chr16:8193497-8193233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-318
               
               
               Cow position:chr16:36930272-36930573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:20-319
               
               
               Cow position:chr16:42340240-42339948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:20-329
               
               
               Cow position:chr16:46253642-46253953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:20-332
               
               
               Cow position:chr16:4399779-4399454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:20-332
               
               
               Cow position:chr16:56831697-56832007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:20-348
               
               
               Cow position:chr16:3628858-3628535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):143, 58

               
               
               Conread position:20-415
               
               
               Cow position:chr16:23025391-23024994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 83

               
               
               Conread position:21-231
               
               
               Cow position:chr16:13792615-13792818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:21-271
               
               
               Cow position:chr16:31348720-31348970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:21-291
               
               
               Cow position:chr16:11105597-11105323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):120, 70

               
               
               Conread position:21-318
               
               
               Cow position:chr16:39514030-39514332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:21-318
               
               
               Cow position:chr16:46521933-46521649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):160, 85

               
               
               Conread position:21-318
               
               
               Cow position:chr16:55047061-55047357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:21-326
               
               
               Cow position:chr16:33226495-33226793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:22-243
               
               
               Cow position:chr16:689745-689539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):167, 33

               
               
               Conread position:22-296
               
               
               Cow position:chr16:26342308-26342046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:22-318
               
               
               Cow position:chr16:238310-238008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:22-345
               
               
               Cow position:chr16:47518887-47518569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:23-296
               
               
               Cow position:chr16:41608656-41608377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:23-318
               
               
               Cow position:chr16:14754286-14754575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:24-331
               
               
               Cow position:chr16:38663670-38663977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):165, 59

               
               
               Conread position:24-354
               
               
               Cow position:chr16:48145362-48145688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:26-186
               
               
               Cow position:chr16:54226559-54226715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:26-282
               
               
               Cow position:chr16:13973249-13973498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):194, 6

               
               
               Conread position:26-290
               
               
               Cow position:chr16:48369911-48370173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-293
               
               
               Cow position:chr16:32781404-32781134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-307
               
               
               Cow position:chr16:30096093-30096372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:26-318
               
               
               Cow position:chr16:4857061-4857344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:26-333
               
               
               Cow position:chr16:45139709-45139402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 53

               
               
               Conread position:26-405
               
               
               Cow position:chr16:11791051-11790669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:27-296
               
               
               Cow position:chr16:4372456-4372727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:28-332
               
               
               Cow position:chr16:7542321-7542024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:29-318
               
               
               Cow position:chr16:7619142-7619449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:29-318
               
               
               Cow position:chr16:16096775-16096486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 61

               
               
               Conread position:29-348
               
               
               Cow position:chr16:22786009-22786329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:30-204
               
               
               Cow position:chr16:30135859-30136029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-303
               
               
               Cow position:chr16:27249438-27249171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:30-303
               
               
               Cow position:chr16:51246981-51246725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr16:24228318-24228603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):159, 62

               
               
               Conread position:30-330
               
               
               Cow position:chr16:44676908-44676625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:30-332
               
               
               Cow position:chr16:7082692-7083000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:30-332
               
               
               Cow position:chr16:43537774-43537471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-395
               
               
               Cow position:chr16:46434082-46434447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:31-315
               
               
               Cow position:chr16:23990446-23990737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:32-293
               
               
               Cow position:chr16:37062353-37062623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:32-332
               
               
               Cow position:chr16:570884-571184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:33-414
               
               
               Cow position:chr16:13791548-13791164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):157, 46

               
               
               Conread position:35-258
               
               
               Cow position:chr16:33790799-33791022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:35-264
               
               
               Cow position:chr16:17982108-17982343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:35-318
               
               
               Cow position:chr16:56912684-56912974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:35-330
               
               
               Cow position:chr16:27005232-27004935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:37-214
               
               
               Cow position:chr16:10773157-10772988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:38-411
               
               
               Cow position:chr16:30639363-30639001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):192, 40

               
               
               Conread position:38-413
               
               
               Cow position:chr16:31558931-31558552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):53, 285

               
               
               Conread position:38-415
               
               
               Cow position:chr16:55308515-55308877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:39-240
               
               
               Cow position:chr16:8236297-8236489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:39-279
               
               
               Cow position:chr16:30706132-30705892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:39-316
               
               
               Cow position:chr16:15189211-15188947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:40-334
               
               
               Cow position:chr16:22868154-22868446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):141, 51

               
               
               Conread position:41-171
               
               
               Cow position:chr16:13107080-13107217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:42-264
               
               
               Cow position:chr16:16280426-16280629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:43-241
               
               
               Cow position:chr16:17282686-17282495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:43-294
               
               
               Cow position:chr16:39417099-39417346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:43-308
               
               
               Cow position:chr16:47336756-47336487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:43-332
               
               
               Cow position:chr16:34483953-34483694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):210, 43

               
               
               Conread position:44-315
               
               
               Cow position:chr16:499118-498866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:45-311
               
               
               Cow position:chr16:50113983-50113724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:46-279
               
               
               Cow position:chr16:4192407-4192633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:47-232
               
               
               Cow position:chr16:23187304-23187111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:47-232
               
               
               Cow position:chr16:33357655-33357839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 79

               
               
               Conread position:47-318
               
               
               Cow position:chr16:29067178-29066915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:47-318
               
               
               Cow position:chr16:30311089-30311362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):92, 68

               
               
               Conread position:47-330
               
               
               Cow position:chr16:26501175-26500896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:47-332
               
               
               Cow position:chr16:42253541-42253837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 255

               
               
               Conread position:47-415
               
               
               Cow position:chr16:8807076-8807432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:47-415
               
               
               Cow position:chr16:15656364-15656010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:48-304
               
               
               Cow position:chr16:4134890-4134627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:49-337
               
               
               Cow position:chr16:4103147-4103428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:51-232
               
               
               Cow position:chr16:9136194-9136013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:52-318
               
               
               Cow position:chr16:14799726-14799993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:52-415
               
               
               Cow position:chr16:44973506-44973147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:55-201
               
               
               Cow position:chr16:26068941-26068800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:55-316
               
               
               Cow position:chr16:14028620-14028872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):159, 33

               
               
               Conread position:55-327
               
               
               Cow position:chr16:35623235-35623512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:55-331
               
               
               Cow position:chr16:11620803-11621069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:55-415
               
               
               Cow position:chr16:31159563-31159912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:55-420
               
               
               Cow position:chr16:47509968-47510321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:56-318
               
               
               Cow position:chr16:9790623-9790884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:57-307
               
               
               Cow position:chr16:11568111-11568351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:57-318
               
               
               Cow position:chr16:24148168-24147902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:57-318
               
               
               Cow position:chr16:51710123-51710381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 36

               
               
               Conread position:57-326
               
               
               Cow position:chr16:16177825-16177555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:57-328
               
               
               Cow position:chr16:23033858-23033606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):163, 36

               
               
               Conread position:58-310
               
               
               Cow position:chr16:29608533-29608273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-410
               
               
               Cow position:chr16:53613312-53612944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:63-318
               
               
               Cow position:chr16:25287690-25287943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:63-318
               
               
               Cow position:chr16:43804494-43804244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:64-318
               
               
               Cow position:chr16:39385410-39385148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:66-296
               
               
               Cow position:chr16:4277714-4277945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:70-318
               
               
               Cow position:chr16:49252751-49252993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:71-264
               
               
               Cow position:chr16:10462523-10462716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:74-307
               
               
               Cow position:chr16:50189593-50189836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:74-331
               
               
               Cow position:chr16:43850835-43851088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:79-318
               
               
               Cow position:chr16:50711910-50712160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:82-396
               
               
               Cow position:chr16:55586611-55586926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 260

               
               
               Conread position:84-277
               
               
               Cow position:chr16:8068835-8069030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:84-282
               
               
               Cow position:chr16:47643398-47643202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:84-318
               
               
               Cow position:chr16:18679182-18678944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:84-318
               
               
               Cow position:chr16:47662698-47662460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:85-244
               
               
               Cow position:chr16:7034297-7034142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:85-318
               
               
               Cow position:chr16:38903458-38903687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:86-332
               
               
               Cow position:chr16:24403725-24403463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:87-263
               
               
               Cow position:chr16:9615254-9615433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:87-282
               
               
               Cow position:chr16:45676868-45677069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:87-293
               
               
               Cow position:chr16:51530986-51531201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:87-311
               
               
               Cow position:chr16:47620364-47620134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:87-332
               
               
               Cow position:chr16:3633277-3633025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:87-369
               
               
               Cow position:chr16:23810895-23810618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:87-415
               
               
               Cow position:chr16:46222967-46223317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:88-318
               
               
               Cow position:chr16:17867487-17867728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:88-332
               
               
               Cow position:chr16:29380239-29379987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:88-338
               
               
               Cow position:chr16:5243951-5243690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:89-318
               
               
               Cow position:chr16:16424622-16424857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:91-310
               
               
               Cow position:chr16:32384843-32385066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:91-317
               
               
               Cow position:chr16:17948202-17948434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:91-410
               
               
               Cow position:chr16:40272035-40271727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:92-315
               
               
               Cow position:chr16:5654490-5654259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:92-316
               
               
               Cow position:chr16:41037670-41037433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:92-333
               
               
               Cow position:chr16:5741220-5740987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:92-414
               
               
               Cow position:chr16:50417710-50418030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-415
               
               
               Cow position:chr16:4503262-4502938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):43, 251

               
               
               Conread position:93-301
               
               
               Cow position:chr16:4875972-4875762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:93-309
               
               
               Cow position:chr16:1548899-1549122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:93-415
               
               
               Cow position:chr16:34998642-34998946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:94-311
               
               
               Cow position:chr16:54515702-54515481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:96-317
               
               
               Cow position:chr16:30209730-30209511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:96-328
               
               
               Cow position:chr16:51399771-51400009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:96-334
               
               
               Cow position:chr16:52219057-52218820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:96-415
               
               
               Cow position:chr16:6379132-6379451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 212

               
               
               Conread position:97-359
               
               
               Cow position:chr16:36911070-36911325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:98-316
               
               
               Cow position:chr16:30908953-30909182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:98-357
               
               
               Cow position:chr16:50014501-50014242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 163

               
               
               Conread position:100-317
               
               
               Cow position:chr16:19408544-19408765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:101-318
               
               
               Cow position:chr16:24128676-24128448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 213

               
               
               Conread position:101-332
               
               
               Cow position:chr16:29766307-29766077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:101-412
               
               
               Cow position:chr16:53547620-53547925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:102-237
               
               
               Cow position:chr16:30045888-30045748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:104-328
               
               
               Cow position:chr16:33752163-33751935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:104-332
               
               
               Cow position:chr16:30939701-30939467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 200

               
               
               Conread position:105-263
               
               
               Cow position:chr16:52182233-52182076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:106-318
               
               
               Cow position:chr16:7997655-7997866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:106-332
               
               
               Cow position:chr16:49141600-49141825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:106-415
               
               
               Cow position:chr16:28816130-28816451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:107-332
               
               
               Cow position:chr16:15254987-15255218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:108-318
               
               
               Cow position:chr16:38708868-38709079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 172

               
               
               Conread position:109-318
               
               
               Cow position:chr16:56198484-56198265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:109-332
               
               
               Cow position:chr16:51598644-51598869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 192

               
               
               Conread position:112-332
               
               
               Cow position:chr16:32132484-32132262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 189

               
               
               Conread position:113-332
               
               
               Cow position:chr16:23823058-23823286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:113-415
               
               
               Cow position:chr16:56150258-56149971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:116-332
               
               
               Cow position:chr16:13043751-13043530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:118-316
               
               
               Cow position:chr16:51043576-51043382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:118-361
               
               
               Cow position:chr16:589964-590205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 97

               
               
               Conread position:127-318
               
               
               Cow position:chr16:37442182-37442381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-332
               
               
               Cow position:chr16:56845950-56846165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:127-342
               
               
               Cow position:chr16:25484308-25484091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:128-318
               
               
               Cow position:chr16:901940-902140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:128-362
               
               
               Cow position:chr16:11422253-11422010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:130-318
               
               
               Cow position:chr16:11449703-11449516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:130-415
               
               
               Cow position:chr16:30290260-30289974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 199

               
               
               Conread position:131-326
               
               
               Cow position:chr16:39616681-39616483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:133-318
               
               
               Cow position:chr16:11615295-11615481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:136-315
               
               
               Cow position:chr16:43152773-43152955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:138-333
               
               
               Cow position:chr16:15363676-15363484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:141-326
               
               
               Cow position:chr16:51578489-51578680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:142-415
               
               
               Cow position:chr16:5293587-5293317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:146-276
               
               
               Cow position:chr16:26846156-26846023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:150-318
               
               
               Cow position:chr16:16232006-16231830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:155-338
               
               
               Cow position:chr16:18685334-18685514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:155-415
               
               
               Cow position:chr16:44138624-44138881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:156-334
               
               
               Cow position:chr16:3333336-3333158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:156-335
               
               
               Cow position:chr16:33777728-33777549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:159-415
               
               
               Cow position:chr16:8706637-8706892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 183

               
               
               Conread position:167-318
               
               
               Cow position:chr16:42073063-42073213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:173-353
               
               
               Cow position:chr16:935546-935734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:174-415
               
               
               Cow position:chr16:22919379-22919150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):168, 33

               
               
               Conread position:175-334
               
               
               Cow position:chr16:54227830-54227995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:178-415
               
               
               Cow position:chr16:11099906-11100137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:182-338
               
               
               Cow position:chr16:33405872-33406030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:207-348
               
               
               Cow position:chr16:50934271-50934416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-202
               
               
               Cow position:chr17:21489520-21489716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:1-226
               
               
               Cow position:chr17:37699247-37699472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 92

               
               
               Conread position:1-282
               
               
               Cow position:chr17:24149289-24149001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:1-293
               
               
               Cow position:chr17:5900474-5900189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:1-302
               
               
               Cow position:chr17:11277923-11278228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-316
               
               
               Cow position:chr17:11381622-11381930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:1-318
               
               
               Cow position:chr17:24077505-24077192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:1-318
               
               
               Cow position:chr17:24580190-24580511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:1-329
               
               
               Cow position:chr17:10633945-10634279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:1-330
               
               
               Cow position:chr17:18495416-18495733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:1-332
               
               
               Cow position:chr17:11215789-11216109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 33

               
               
               Conread position:1-332
               
               
               Cow position:chr17:18720342-18720674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-332
               
               
               Cow position:chr17:29292277-29292595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:1-415
               
               
               Cow position:chr17:20083417-20083813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:1-415
               
               
               Cow position:chr17:20889476-20889074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:2-334
               
               
               Cow position:chr17:40771934-40771602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:2-415
               
               
               Cow position:chr17:34079009-34079399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:3-306
               
               
               Cow position:chr17:18824888-18824589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-314
               
               
               Cow position:chr17:34864672-34864362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-318
               
               
               Cow position:chr17:37414800-37415112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-333
               
               
               Cow position:chr17:6936579-6936891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):178, 32

               
               
               Conread position:3-356
               
               
               Cow position:chr17:20208726-20209059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 76

               
               
               Conread position:6-307
               
               
               Cow position:chr17:5006392-5006692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):233, 24

               
               
               Conread position:7-318
               
               
               Cow position:chr17:1020464-1020779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 76

               
               
               Conread position:7-318
               
               
               Cow position:chr17:16371353-16371040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr17:20780612-20780300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:7-326
               
               
               Cow position:chr17:13922580-13922253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:7-330
               
               
               Cow position:chr17:3042573-3042255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:7-330
               
               
               Cow position:chr17:39012816-39012494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:7-332
               
               
               Cow position:chr17:11036009-11035695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-333
               
               
               Cow position:chr17:25541720-25542039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-334
               
               
               Cow position:chr17:7760376-7760691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:7-335
               
               
               Cow position:chr17:27697604-27697921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-358
               
               
               Cow position:chr17:20216264-20215920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):127, 16

               
               
               Conread position:7-396
               
               
               Cow position:chr17:25708053-25707663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:7-415
               
               
               Cow position:chr17:1410141-1410547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-415
               
               
               Cow position:chr17:11171890-11171495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-415
               
               
               Cow position:chr17:21959591-21959979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:8-235
               
               
               Cow position:chr17:10020695-10020920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 97

               
               
               Conread position:9-114
               
               
               Cow position:chr17:25169173-25169066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:9-136
               
               
               Cow position:chr17:7577692-7577565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:9-159
               
               
               Cow position:chr17:25126445-25126303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-179
               
               
               Cow position:chr17:36864725-36864562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-192
               
               
               Cow position:chr17:38263395-38263568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-201
               
               
               Cow position:chr17:9056603-9056792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-206
               
               
               Cow position:chr17:27202951-27203140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-210
               
               
               Cow position:chr17:10561729-10561530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:9-210
               
               
               Cow position:chr17:14652685-14652880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-215
               
               
               Cow position:chr17:7654357-7654560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:9-222
               
               
               Cow position:chr17:11215137-11215341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:9-225
               
               
               Cow position:chr17:20810394-20810603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:9-235
               
               
               Cow position:chr17:10431881-10432102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:9-236
               
               
               Cow position:chr17:20884618-20884397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-236
               
               
               Cow position:chr17:39857485-39857267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-240
               
               
               Cow position:chr17:6329210-6328982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-240
               
               
               Cow position:chr17:14060679-14060906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:9-240
               
               
               Cow position:chr17:24928570-24928349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:9-240
               
               
               Cow position:chr17:32280761-32280539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:9-245
               
               
               Cow position:chr17:27058462-27058688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-245
               
               
               Cow position:chr17:31037282-31037515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-250
               
               
               Cow position:chr17:20874491-20874251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:9-260
               
               
               Cow position:chr17:24559385-24559145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-263
               
               
               Cow position:chr17:18146280-18146025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:9-267
               
               
               Cow position:chr17:14762027-14762280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):178, 89

               
               
               Conread position:9-269
               
               
               Cow position:chr17:7142956-7142701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):180, 75

               
               
               Conread position:9-277
               
               
               Cow position:chr17:20932426-20932158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-282
               
               
               Cow position:chr17:12108899-12108627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-282
               
               
               Cow position:chr17:32273592-32273860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:9-289
               
               
               Cow position:chr17:34596035-34595756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-290
               
               
               Cow position:chr17:22806448-22806725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:9-293
               
               
               Cow position:chr17:10458837-10459122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:9-293
               
               
               Cow position:chr17:24824337-24824065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-293
               
               
               Cow position:chr17:33275655-33275933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 29

               
               
               Conread position:9-293
               
               
               Cow position:chr17:37481974-37482266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):175, 110

               
               
               Conread position:9-296
               
               
               Cow position:chr17:37479907-37480183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:9-303
               
               
               Cow position:chr17:9911852-9911566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):233, 20

               
               
               Conread position:9-304
               
               
               Cow position:chr17:4601450-4601745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:9-304
               
               
               Cow position:chr17:24490636-24490323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:9-305
               
               
               Cow position:chr17:21434636-21434928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-306
               
               
               Cow position:chr17:5514855-5514559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-311
               
               
               Cow position:chr17:1035502-1035809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:9-311
               
               
               Cow position:chr17:25032387-25032677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-315
               
               
               Cow position:chr17:20848617-20848322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-315
               
               
               Cow position:chr17:32278811-32279116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:9-315
               
               
               Cow position:chr17:38647156-38646859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-317
               
               
               Cow position:chr17:9854071-9853775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):160, 20

               
               
               Conread position:9-317
               
               
               Cow position:chr17:21755340-21755652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr17:5422974-5423283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):225, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr17:6423859-6423549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr17:9117739-9117431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr17:11156399-11156705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr17:15684605-15684293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr17:17410388-17410086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr17:20081703-20081991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr17:20800908-20800604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr17:25097550-25097251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-318
               
               
               Cow position:chr17:25796242-25796552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr17:26231049-26230728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr17:29363266-29363575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):77, 138

               
               
               Conread position:9-318
               
               
               Cow position:chr17:32027357-32027674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr17:40741747-40741435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:9-324
               
               
               Cow position:chr17:13940227-13940540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-324
               
               
               Cow position:chr17:32419021-32419336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-325
               
               
               Cow position:chr17:2662519-2662190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:9-326
               
               
               Cow position:chr17:14848447-14848743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-326
               
               
               Cow position:chr17:21680874-21680548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:9-326
               
               
               Cow position:chr17:30718323-30718639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-329
               
               
               Cow position:chr17:33271588-33271902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-330
               
               
               Cow position:chr17:3503676-3503356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:9-331
               
               
               Cow position:chr17:17059518-17059215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:9-331
               
               
               Cow position:chr17:21003734-21004056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-331
               
               
               Cow position:chr17:32138329-32138625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr17:1493054-1493382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr17:8079407-8079091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr17:9565396-9565083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr17:11664490-11664814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr17:18201852-18201548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr17:18860626-18860945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-332
               
               
               Cow position:chr17:21335597-21335924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-332
               
               
               Cow position:chr17:22032602-22032909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:9-332
               
               
               Cow position:chr17:23063814-23063485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:9-332
               
               
               Cow position:chr17:25189380-25189054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr17:25815699-25815382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:9-332
               
               
               Cow position:chr17:27795749-27795422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:9-332
               
               
               Cow position:chr17:33288562-33288880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):225, 73

               
               
               Conread position:9-332
               
               
               Cow position:chr17:35126805-35126488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:9-332
               
               
               Cow position:chr17:38833138-38832816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr17:39736269-39735960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:9-333
               
               
               Cow position:chr17:29080638-29080339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-333
               
               
               Cow position:chr17:32989571-32989266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:9-333
               
               
               Cow position:chr17:32993529-32993840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):232, 63

               
               
               Conread position:9-333
               
               
               Cow position:chr17:38200668-38200993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:9-334
               
               
               Cow position:chr17:37163436-37163755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-335
               
               
               Cow position:chr17:18490635-18490304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-338
               
               
               Cow position:chr17:9746607-9746289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-354
               
               
               Cow position:chr17:11832020-11832384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):172, 87

               
               
               Conread position:9-368
               
               
               Cow position:chr17:24587719-24587356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-414
               
               
               Cow position:chr17:5224494-5224103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-414
               
               
               Cow position:chr17:34316622-34317017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr17:2810727-2810315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:9-415
               
               
               Cow position:chr17:11618679-11618279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-415
               
               
               Cow position:chr17:12289314-12289720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):96, 157

               
               
               Conread position:9-415
               
               
               Cow position:chr17:14003920-14003528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr17:14033547-14033948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:9-415
               
               
               Cow position:chr17:20032817-20033214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr17:20992947-20993341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-415
               
               
               Cow position:chr17:33933650-33934047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:9-418
               
               
               Cow position:chr17:38615055-38614656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:10-228
               
               
               Cow position:chr17:31856767-31856545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-241
               
               
               Cow position:chr17:11962439-11962680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:10-242
               
               
               Cow position:chr17:6848888-6848673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:10-279
               
               
               Cow position:chr17:12591268-12590990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:10-313
               
               
               Cow position:chr17:21628572-21628275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 43

               
               
               Conread position:10-317
               
               
               Cow position:chr17:26765117-26764803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:10-317
               
               
               Cow position:chr17:40288906-40289214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-318
               
               
               Cow position:chr17:4611969-4612289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:10-318
               
               
               Cow position:chr17:5733373-5733660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:10-330
               
               
               Cow position:chr17:2034623-2034321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:10-332
               
               
               Cow position:chr17:5731010-5730698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:10-345
               
               
               Cow position:chr17:7648306-7647983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-350
               
               
               Cow position:chr17:33998952-33999289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:10-355
               
               
               Cow position:chr17:12219845-12220187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 57

               
               
               Conread position:11-189
               
               
               Cow position:chr17:39715253-39715079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-198
               
               
               Cow position:chr17:25342648-25342828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:11-205
               
               
               Cow position:chr17:23516849-23517037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-209
               
               
               Cow position:chr17:34751313-34751504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:11-222
               
               
               Cow position:chr17:23798374-23798170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:11-235
               
               
               Cow position:chr17:26233737-26233951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-236
               
               
               Cow position:chr17:32349160-32348948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:11-240
               
               
               Cow position:chr17:21414737-21414965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:11-271
               
               
               Cow position:chr17:27549735-27549992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):171, 25

               
               
               Conread position:11-279
               
               
               Cow position:chr17:8836855-8837122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):102, 18

               
               
               Conread position:11-296
               
               
               Cow position:chr17:6566574-6566281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:11-296
               
               
               Cow position:chr17:26000210-25999926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-316
               
               
               Cow position:chr17:41891968-41892281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:11-318
               
               
               Cow position:chr17:923972-923668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:11-318
               
               
               Cow position:chr17:8544399-8544098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:11-318
               
               
               Cow position:chr17:11281007-11281319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:11-318
               
               
               Cow position:chr17:20022421-20022729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-318
               
               
               Cow position:chr17:21738781-21739096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-332
               
               
               Cow position:chr17:15664770-15664443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:11-332
               
               
               Cow position:chr17:24883478-24883790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-332
               
               
               Cow position:chr17:35387908-35388236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:11-335
               
               
               Cow position:chr17:19891717-19891386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:11-337
               
               
               Cow position:chr17:25901293-25900968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-342
               
               
               Cow position:chr17:5768000-5767678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):199, 82

               
               
               Conread position:11-362
               
               
               Cow position:chr17:24786927-24787277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:11-415
               
               
               Cow position:chr17:30529452-30529837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 77

               
               
               Conread position:11-415
               
               
               Cow position:chr17:43141616-43142021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):86, 103

               
               
               Conread position:11-416
               
               
               Cow position:chr17:23803553-23803164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:12-262
               
               
               Cow position:chr17:7614287-7614529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:14-187
               
               
               Cow position:chr17:29026161-29025990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):125, 101

               
               
               Conread position:14-240
               
               
               Cow position:chr17:34650550-34650316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:14-290
               
               
               Cow position:chr17:25612180-25611909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:14-296
               
               
               Cow position:chr17:12536375-12536658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-311
               
               
               Cow position:chr17:2006785-2006496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):6, 56

               
               
               Conread position:14-344
               
               
               Cow position:chr17:17406225-17405900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):195, 92

               
               
               Conread position:15-230
               
               
               Cow position:chr17:12946260-12946481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):80, 201

               
               
               Conread position:15-231
               
               
               Cow position:chr17:25916984-25916775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 73

               
               
               Conread position:15-258
               
               
               Cow position:chr17:484687-484451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:15-290
               
               
               Cow position:chr17:40893240-40892965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:16-208
               
               
               Cow position:chr17:11344306-11344119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:16-318
               
               
               Cow position:chr17:13243957-13244238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:16-332
               
               
               Cow position:chr17:27679145-27679470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:16-369
               
               
               Cow position:chr17:13989084-13989436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):192, 58

               
               
               Conread position:19-311
               
               
               Cow position:chr17:29715113-29715391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:19-331
               
               
               Cow position:chr17:30204746-30204430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:20-318
               
               
               Cow position:chr17:11296733-11296423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:20-318
               
               
               Cow position:chr17:27048240-27047951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:20-318
               
               
               Cow position:chr17:30665356-30665062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-328
               
               
               Cow position:chr17:3466908-3466614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):143, 17

               
               
               Conread position:20-330
               
               
               Cow position:chr17:7132356-7132679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:21-237
               
               
               Cow position:chr17:27183860-27184067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):162, 22

               
               
               Conread position:21-293
               
               
               Cow position:chr17:908823-908559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):118, 52

               
               
               Conread position:21-317
               
               
               Cow position:chr17:8279624-8279918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):118, 43

               
               
               Conread position:21-318
               
               
               Cow position:chr17:15102811-15103100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):209, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr17:18246160-18245863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:21-318
               
               
               Cow position:chr17:18592525-18592227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):209, 79

               
               
               Conread position:21-318
               
               
               Cow position:chr17:32471698-32472003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 84

               
               
               Conread position:21-326
               
               
               Cow position:chr17:12059010-12059310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:21-328
               
               
               Cow position:chr17:20870015-20870315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-331
               
               
               Cow position:chr17:36746242-36746543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:21-333
               
               
               Cow position:chr17:21114871-21115175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):223, 61

               
               
               Conread position:21-333
               
               
               Cow position:chr17:36330874-36331193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:21-410
               
               
               Cow position:chr17:8690362-8690748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:22-188
               
               
               Cow position:chr17:1469461-1469299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:22-260
               
               
               Cow position:chr17:4786415-4786650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:22-282
               
               
               Cow position:chr17:38362901-38363147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:22-405
               
               
               Cow position:chr17:15333628-15334011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:22-415
               
               
               Cow position:chr17:21973048-21973432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 55

               
               
               Conread position:23-318
               
               
               Cow position:chr17:11101722-11102006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:23-338
               
               
               Cow position:chr17:34948718-34948408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:23-415
               
               
               Cow position:chr17:5898452-5898827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):167, 9

               
               
               Conread position:24-258
               
               
               Cow position:chr17:267505-267736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:24-332
               
               
               Cow position:chr17:32366367-32366060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:25-318
               
               
               Cow position:chr17:20839487-20839770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:26-311
               
               
               Cow position:chr17:21243709-21243991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:26-318
               
               
               Cow position:chr17:28540108-28539824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-318
               
               
               Cow position:chr17:40331845-40331557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:26-318
               
               
               Cow position:chr17:41289944-41290229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:26-331
               
               
               Cow position:chr17:1783527-1783831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-354
               
               
               Cow position:chr17:6624334-6624008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 65

               
               
               Conread position:27-209
               
               
               Cow position:chr17:17266814-17266993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 65

               
               
               Conread position:27-290
               
               
               Cow position:chr17:12447324-12447582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:29-332
               
               
               Cow position:chr17:15299797-15300096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:30-306
               
               
               Cow position:chr17:31231043-31231314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:30-318
               
               
               Cow position:chr17:7698125-7697844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:30-318
               
               
               Cow position:chr17:27274640-27274350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:30-415
               
               
               Cow position:chr17:21292968-21293346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:31-188
               
               
               Cow position:chr17:1466355-1466507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:31-310
               
               
               Cow position:chr17:44232639-44232924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:31-333
               
               
               Cow position:chr17:26183301-26182995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:32-364
               
               
               Cow position:chr17:9778315-9777993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:32-415
               
               
               Cow position:chr17:3782119-3781735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 59

               
               
               Conread position:33-318
               
               
               Cow position:chr17:23246279-23246000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):199, 46

               
               
               Conread position:33-415
               
               
               Cow position:chr17:24550248-24549869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:34-264
               
               
               Cow position:chr17:43323695-43323916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:34-311
               
               
               Cow position:chr17:20912958-20912693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):151, 59

               
               
               Conread position:34-353
               
               
               Cow position:chr17:24761158-24761470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:35-225
               
               
               Cow position:chr17:25502182-25501995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:35-316
               
               
               Cow position:chr17:11362254-11361973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:36-325
               
               
               Cow position:chr17:25755864-25755565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:37-369
               
               
               Cow position:chr17:36791203-36790880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:38-308
               
               
               Cow position:chr17:22564254-22563981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 69

               
               
               Conread position:38-315
               
               
               Cow position:chr17:21323342-21323091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):143, 46

               
               
               Conread position:38-317
               
               
               Cow position:chr17:3471485-3471210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-333
               
               
               Cow position:chr17:44146908-44147199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:38-373
               
               
               Cow position:chr17:45466091-45465768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):253, 49

               
               
               Conread position:39-264
               
               
               Cow position:chr17:28468193-28467978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):202, 46

               
               
               Conread position:39-329
               
               
               Cow position:chr17:34207750-34208043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:40-310
               
               
               Cow position:chr17:42347160-42347425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:40-316
               
               
               Cow position:chr17:27765336-27765071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:41-209
               
               
               Cow position:chr17:2839972-2839809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:43-318
               
               
               Cow position:chr17:13143627-13143902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:44-235
               
               
               Cow position:chr17:21910861-21911045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:44-296
               
               
               Cow position:chr17:26881271-26881527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:44-331
               
               
               Cow position:chr17:41030011-41029727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:45-316
               
               
               Cow position:chr17:33926064-33926331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):183, 29

               
               
               Conread position:45-318
               
               
               Cow position:chr17:1526292-1526565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:47-208
               
               
               Cow position:chr17:20306107-20305950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-242
               
               
               Cow position:chr17:11921217-11921414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:47-278
               
               
               Cow position:chr17:30734237-30734451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:47-317
               
               
               Cow position:chr17:19999194-19998924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:47-326
               
               
               Cow position:chr17:242695-242416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-326
               
               
               Cow position:chr17:18884273-18884567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:47-332
               
               
               Cow position:chr17:1295514-1295797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:50-335
               
               
               Cow position:chr17:20234290-20233998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:51-196
               
               
               Cow position:chr17:20857791-20857933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:52-412
               
               
               Cow position:chr17:5246946-5246587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:54-311
               
               
               Cow position:chr17:27429629-27429373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:55-412
               
               
               Cow position:chr17:21312760-21313113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:56-293
               
               
               Cow position:chr17:35311475-35311234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:56-316
               
               
               Cow position:chr17:966698-966949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:56-332
               
               
               Cow position:chr17:5330632-5330349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:56-333
               
               
               Cow position:chr17:3387321-3387067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:57-280
               
               
               Cow position:chr17:20990145-20990368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:57-415
               
               
               Cow position:chr17:11056322-11056680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:60-311
               
               
               Cow position:chr17:15067581-15067828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):79, 25

               
               
               Conread position:60-334
               
               
               Cow position:chr17:5895866-5896138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:63-307
               
               
               Cow position:chr17:26224552-26224317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:63-318
               
               
               Cow position:chr17:1275568-1275307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:66-310
               
               
               Cow position:chr17:4472777-4473007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:72-221
               
               
               Cow position:chr17:24910014-24909867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:74-318
               
               
               Cow position:chr17:33122130-33121876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:74-415
               
               
               Cow position:chr17:21874267-21874617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):28, 281

               
               
               Conread position:76-267
               
               
               Cow position:chr17:38613283-38613085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:79-415
               
               
               Cow position:chr17:5280615-5280943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:80-334
               
               
               Cow position:chr17:2079794-2079533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 241

               
               
               Conread position:81-317
               
               
               Cow position:chr17:4721521-4721276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:82-318
               
               
               Cow position:chr17:5041654-5041888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 6

               
               
               Conread position:82-330
               
               
               Cow position:chr17:27162678-27162428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:83-318
               
               
               Cow position:chr17:26085065-26084823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 220

               
               
               Conread position:84-296
               
               
               Cow position:chr17:20072064-20072265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:84-318
               
               
               Cow position:chr17:35185068-35184822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:85-293
               
               
               Cow position:chr17:4436208-4436418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:85-317
               
               
               Cow position:chr17:7890148-7890390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:85-331
               
               
               Cow position:chr17:1061034-1061287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:85-332
               
               
               Cow position:chr17:11386543-11386290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:85-348
               
               
               Cow position:chr17:33402909-33403182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:85-415
               
               
               Cow position:chr17:32651647-32651315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 259

               
               
               Conread position:86-296
               
               
               Cow position:chr17:21697761-21697542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:87-222
               
               
               Cow position:chr17:14883061-14883196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:89-318
               
               
               Cow position:chr17:25590214-25590448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:89-352
               
               
               Cow position:chr17:28359862-28359607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:90-350
               
               
               Cow position:chr17:5745232-5745487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:90-415
               
               
               Cow position:chr17:34628458-34628786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 237

               
               
               Conread position:91-318
               
               
               Cow position:chr17:18109065-18109298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:91-325
               
               
               Cow position:chr17:25128324-25128568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 184

               
               
               Conread position:91-331
               
               
               Cow position:chr17:6156062-6155816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:91-415
               
               
               Cow position:chr17:31231911-31232241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:92-237
               
               
               Cow position:chr17:10222364-10222510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 65

               
               
               Conread position:92-277
               
               
               Cow position:chr17:24821885-24821695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:92-331
               
               
               Cow position:chr17:1081013-1080779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 66

               
               
               Conread position:92-332
               
               
               Cow position:chr17:25608482-25608732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 215

               
               
               Conread position:93-265
               
               
               Cow position:chr17:40792239-40792064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:93-356
               
               
               Cow position:chr17:3270330-3270083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:94-316
               
               
               Cow position:chr17:22781708-22781482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:95-318
               
               
               Cow position:chr17:21363421-21363196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:96-296
               
               
               Cow position:chr17:21207117-21207325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 81

               
               
               Conread position:96-415
               
               
               Cow position:chr17:30539237-30539550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:97-274
               
               
               Cow position:chr17:30359487-30359310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):83, 119

               
               
               Conread position:97-318
               
               
               Cow position:chr17:18494501-18494727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 185

               
               
               Conread position:98-318
               
               
               Cow position:chr17:30236221-30236016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:99-326
               
               
               Cow position:chr17:20126625-20126401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:100-222
               
               
               Cow position:chr17:12768769-12768892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:100-332
               
               
               Cow position:chr17:3306878-3306642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):42, 203

               
               
               Conread position:100-415
               
               
               Cow position:chr17:43717307-43717609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:101-318
               
               
               Cow position:chr17:15133159-15132954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:101-331
               
               
               Cow position:chr17:4606967-4606745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:102-315
               
               
               Cow position:chr17:10446928-10446707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:102-331
               
               
               Cow position:chr17:23101199-23101436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:104-317
               
               
               Cow position:chr17:3843487-3843276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:104-318
               
               
               Cow position:chr17:25740960-25740738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:106-303
               
               
               Cow position:chr17:43634112-43633925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:106-316
               
               
               Cow position:chr17:19455306-19455513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:106-318
               
               
               Cow position:chr17:21017802-21017582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:106-332
               
               
               Cow position:chr17:4824501-4824275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:106-334
               
               
               Cow position:chr17:12216067-12216305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:106-414
               
               
               Cow position:chr17:24973957-24973650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 234

               
               
               Conread position:107-318
               
               
               Cow position:chr17:24554011-24553792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:107-318
               
               
               Cow position:chr17:44924182-44924387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:108-365
               
               
               Cow position:chr17:24608851-24608589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:110-264
               
               
               Cow position:chr17:979154-979311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:110-307
               
               
               Cow position:chr17:31481035-31481247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:113-318
               
               
               Cow position:chr17:5380969-5380754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):26, 162

               
               
               Conread position:113-318
               
               
               Cow position:chr17:21419435-21419220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-368
               
               
               Cow position:chr17:14088326-14088589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:114-317
               
               
               Cow position:chr17:7040949-7041156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:115-344
               
               
               Cow position:chr17:17452608-17452840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:118-311
               
               
               Cow position:chr17:33052853-33052658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:118-350
               
               
               Cow position:chr17:30999760-30999532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:122-296
               
               
               Cow position:chr17:3518263-3518442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:123-317
               
               
               Cow position:chr17:20835585-20835382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:123-318
               
               
               Cow position:chr17:5000590-5000786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 175

               
               
               Conread position:123-349
               
               
               Cow position:chr17:38116401-38116169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:124-318
               
               
               Cow position:chr17:29040478-29040678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:124-415
               
               
               Cow position:chr17:7559682-7559979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:127-245
               
               
               Cow position:chr17:20928899-20928780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:127-318
               
               
               Cow position:chr17:1327986-1328182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:127-318
               
               
               Cow position:chr17:3182600-3182796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:127-318
               
               
               Cow position:chr17:16307363-16307168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-332
               
               
               Cow position:chr17:24877127-24876912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-403
               
               
               Cow position:chr17:32554040-32554320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:128-318
               
               
               Cow position:chr17:3498680-3498876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:130-318
               
               
               Cow position:chr17:21710486-21710293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:133-346
               
               
               Cow position:chr17:1358823-1359037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 148

               
               
               Conread position:133-415
               
               
               Cow position:chr17:8214901-8214607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:138-318
               
               
               Cow position:chr17:25078029-25078205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 107

               
               
               Conread position:138-325
               
               
               Cow position:chr17:18473152-18472960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 163

               
               
               Conread position:138-346
               
               
               Cow position:chr17:36817914-36817702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:141-307
               
               
               Cow position:chr17:40312696-40312520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:150-331
               
               
               Cow position:chr17:16117462-16117654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:151-332
               
               
               Cow position:chr17:20090665-20090847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:155-318
               
               
               Cow position:chr17:36533612-36533449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:155-346
               
               
               Cow position:chr17:7810778-7810979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:156-344
               
               
               Cow position:chr17:37773581-37773770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:159-318
               
               
               Cow position:chr17:12325796-12325958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:160-356
               
               
               Cow position:chr17:23680931-23680734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:160-415
               
               
               Cow position:chr17:8644990-8644736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 107

               
               
               Conread position:169-362
               
               
               Cow position:chr17:20337732-20337539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:173-359
               
               
               Cow position:chr17:30413977-30413783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:179-333
               
               
               Cow position:chr17:11655356-11655196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:188-309
               
               
               Cow position:chr17:10432277-10432398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:188-350
               
               
               Cow position:chr17:15376244-15376080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:1-221
               
               
               Cow position:chr18:346467-346686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:1-240
               
               
               Cow position:chr18:36183875-36184104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:1-291
               
               
               Cow position:chr18:7956178-7955884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:1-309
               
               
               Cow position:chr18:18918928-18919229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:1-310
               
               
               Cow position:chr18:30794456-30794157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:1-311
               
               
               Cow position:chr18:11691378-11691688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:1-314
               
               
               Cow position:chr18:46436734-46437034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:1-317
               
               
               Cow position:chr18:42454991-42455304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:1-318
               
               
               Cow position:chr18:4078825-4078523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:1-318
               
               
               Cow position:chr18:49200664-49200355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:1-368
               
               
               Cow position:chr18:42061108-42060741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:2-318
               
               
               Cow position:chr18:29371895-29371583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):136, 89

               
               
               Conread position:2-324
               
               
               Cow position:chr18:248787-249094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):240, 57

               
               
               Conread position:2-338
               
               
               Cow position:chr18:25206160-25206497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):137, 65

               
               
               Conread position:3-308
               
               
               Cow position:chr18:9806448-9806135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:3-318
               
               
               Cow position:chr18:32873619-32873298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:3-318
               
               
               Cow position:chr18:46452851-46453164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:3-328
               
               
               Cow position:chr18:23062173-23062498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:3-349
               
               
               Cow position:chr18:36264745-36265099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 57

               
               
               Conread position:5-415
               
               
               Cow position:chr18:14048734-14048338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 87

               
               
               Conread position:6-318
               
               
               Cow position:chr18:55461682-55461994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 87

               
               
               Conread position:7-179
               
               
               Cow position:chr18:48242213-48242047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:7-189
               
               
               Cow position:chr18:29474767-29474588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-205
               
               
               Cow position:chr18:30586202-30586388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:7-213
               
               
               Cow position:chr18:51676066-51676272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):173, 81

               
               
               Conread position:7-235
               
               
               Cow position:chr18:51392620-51392840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):174, 30

               
               
               Conread position:7-293
               
               
               Cow position:chr18:29796405-29796685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-307
               
               
               Cow position:chr18:54574296-54574587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):235, 78

               
               
               Conread position:7-318
               
               
               Cow position:chr18:3166466-3166773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:7-318
               
               
               Cow position:chr18:14815325-14815620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):213, 22

               
               
               Conread position:7-318
               
               
               Cow position:chr18:15880821-15881142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 207

               
               
               Conread position:7-318
               
               
               Cow position:chr18:19849734-19850031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:7-318
               
               
               Cow position:chr18:31586352-31586649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):175, 42

               
               
               Conread position:7-318
               
               
               Cow position:chr18:55499095-55498781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):167, 72

               
               
               Conread position:7-332
               
               
               Cow position:chr18:4182164-4182489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-332
               
               
               Cow position:chr18:7947413-7947076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:7-333
               
               
               Cow position:chr18:7359768-7359434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):152, 81

               
               
               Conread position:7-415
               
               
               Cow position:chr18:36458954-36458560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:7-415
               
               
               Cow position:chr18:55697000-55697389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):232, 27

               
               
               Conread position:8-234
               
               
               Cow position:chr18:5072388-5072608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 87

               
               
               Conread position:8-296
               
               
               Cow position:chr18:10322828-10322537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:8-326
               
               
               Cow position:chr18:50993247-50993563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-133
               
               
               Cow position:chr18:47417023-47416898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-162
               
               
               Cow position:chr18:19883554-19883404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:9-187
               
               
               Cow position:chr18:5632289-5632116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:9-187
               
               
               Cow position:chr18:16997275-16997103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):126, 75

               
               
               Conread position:9-195
               
               
               Cow position:chr18:51643344-51643528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):170, 78

               
               
               Conread position:9-199
               
               
               Cow position:chr18:4556148-4556331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-201
               
               
               Cow position:chr18:4952189-4952373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-202
               
               
               Cow position:chr18:56190941-56191136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:9-210
               
               
               Cow position:chr18:43555503-43555698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-225
               
               
               Cow position:chr18:16686314-16686525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-225
               
               
               Cow position:chr18:22143500-22143724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-228
               
               
               Cow position:chr18:8300040-8299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-228
               
               
               Cow position:chr18:36296992-36297224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:9-233
               
               
               Cow position:chr18:27109271-27109493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-235
               
               
               Cow position:chr18:4857866-4858103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:9-235
               
               
               Cow position:chr18:7415010-7415227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 46

               
               
               Conread position:9-240
               
               
               Cow position:chr18:247674-247886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-240
               
               
               Cow position:chr18:23714862-23715088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-245
               
               
               Cow position:chr18:3211899-3211660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:9-245
               
               
               Cow position:chr18:47812491-47812261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-247
               
               
               Cow position:chr18:1954568-1954804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 70

               
               
               Conread position:9-247
               
               
               Cow position:chr18:39623821-39623588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:9-254
               
               
               Cow position:chr18:21102755-21102990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-264
               
               
               Cow position:chr18:25984550-25984804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:9-264
               
               
               Cow position:chr18:42479565-42479823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:9-268
               
               
               Cow position:chr18:4495865-4496123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 89

               
               
               Conread position:9-277
               
               
               Cow position:chr18:12809876-12809615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-277
               
               
               Cow position:chr18:37382072-37382342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:9-293
               
               
               Cow position:chr18:43283735-43284018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-307
               
               
               Cow position:chr18:34527073-34527376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:9-310
               
               
               Cow position:chr18:35537214-35537506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-313
               
               
               Cow position:chr18:5711632-5711948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:9-316
               
               
               Cow position:chr18:26998906-26998581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:9-316
               
               
               Cow position:chr18:47512027-47511711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr18:25282533-25282839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:9-318
               
               
               Cow position:chr18:9974307-9974610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr18:11867358-11867066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr18:16227578-16227276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 40

               
               
               Conread position:9-318
               
               
               Cow position:chr18:19273075-19273386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-318
               
               
               Cow position:chr18:20174108-20174415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr18:21252009-21251701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr18:29958143-29958431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr18:37023529-37023841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr18:38344827-38344519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-318
               
               
               Cow position:chr18:38985720-38985402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:9-318
               
               
               Cow position:chr18:39875238-39875544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr18:40759228-40758931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr18:44801868-44802168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr18:51405885-51406188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:9-318
               
               
               Cow position:chr18:55692837-55692537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-324
               
               
               Cow position:chr18:16044130-16044445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:9-324
               
               
               Cow position:chr18:45104420-45104737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-324
               
               
               Cow position:chr18:56166002-56165692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-325
               
               
               Cow position:chr18:5995491-5995180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-326
               
               
               Cow position:chr18:51691441-51691761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-327
               
               
               Cow position:chr18:50382269-50381963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-330
               
               
               Cow position:chr18:35012296-35012603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-330
               
               
               Cow position:chr18:46048773-46048464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr18:9365942-9365613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:9-332
               
               
               Cow position:chr18:10656460-10656147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr18:14586449-14586775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr18:17005281-17004951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):121, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr18:21176208-21175881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-332
               
               
               Cow position:chr18:51757115-51756799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):140, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr18:55552988-55552666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-333
               
               
               Cow position:chr18:3158576-3158901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-333
               
               
               Cow position:chr18:28101654-28101326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:9-333
               
               
               Cow position:chr18:28657890-28658214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-334
               
               
               Cow position:chr18:15025693-15025378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:9-334
               
               
               Cow position:chr18:32410993-32411289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:9-352
               
               
               Cow position:chr18:33157838-33157502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:9-363
               
               
               Cow position:chr18:21266527-21266175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 75

               
               
               Conread position:9-364
               
               
               Cow position:chr18:20127084-20127433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-414
               
               
               Cow position:chr18:11322617-11322216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):166, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr18:39662800-39662403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 89

               
               
               Conread position:9-415
               
               
               Cow position:chr18:44262651-44262244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:10-200
               
               
               Cow position:chr18:51515241-51515430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 57

               
               
               Conread position:10-202
               
               
               Cow position:chr18:50205768-50205957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:10-289
               
               
               Cow position:chr18:1495324-1495049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:10-317
               
               
               Cow position:chr18:47525428-47525122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 98

               
               
               Conread position:10-318
               
               
               Cow position:chr18:22120865-22121167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:10-318
               
               
               Cow position:chr18:51443419-51443714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:10-326
               
               
               Cow position:chr18:1144164-1144486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:10-332
               
               
               Cow position:chr18:4748862-4749182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):137, 88

               
               
               Conread position:10-360
               
               
               Cow position:chr18:25970614-25970959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:10-416
               
               
               Cow position:chr18:51212204-51211791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:11-193
               
               
               Cow position:chr18:52855074-52854893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:11-204
               
               
               Cow position:chr18:43950845-43950656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-234
               
               
               Cow position:chr18:55806614-55806833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:11-237
               
               
               Cow position:chr18:51500054-51500274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-245
               
               
               Cow position:chr18:10977192-10977414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:11-250
               
               
               Cow position:chr18:18369342-18369578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-289
               
               
               Cow position:chr18:23476668-23476930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):231, 81

               
               
               Conread position:11-290
               
               
               Cow position:chr18:26355009-26355290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-309
               
               
               Cow position:chr18:7951134-7950837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):221, 74

               
               
               Conread position:11-314
               
               
               Cow position:chr18:23447042-23447363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:11-315
               
               
               Cow position:chr18:51656023-51656335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-317
               
               
               Cow position:chr18:3180430-3180136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):228, 75

               
               
               Conread position:11-318
               
               
               Cow position:chr18:5766428-5766144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:11-318
               
               
               Cow position:chr18:11685001-11684705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr18:21681953-21682255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:11-331
               
               
               Cow position:chr18:4381313-4380997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:11-331
               
               
               Cow position:chr18:8104920-8105241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:11-331
               
               
               Cow position:chr18:52637510-52637827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:11-332
               
               
               Cow position:chr18:16842039-16842364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:11-332
               
               
               Cow position:chr18:28768385-28768068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:11-334
               
               
               Cow position:chr18:51298500-51298180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):128, 17

               
               
               Conread position:11-335
               
               
               Cow position:chr18:43065549-43065207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:11-349
               
               
               Cow position:chr18:24855824-24856158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):231, 82

               
               
               Conread position:11-354
               
               
               Cow position:chr18:4516049-4515706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-405
               
               
               Cow position:chr18:7965251-7964867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):109, 79

               
               
               Conread position:11-415
               
               
               Cow position:chr18:29356605-29357011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr18:45961252-45961633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:12-318
               
               
               Cow position:chr18:11377383-11377080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):169, 72

               
               
               Conread position:13-189
               
               
               Cow position:chr18:22274820-22274988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:13-355
               
               
               Cow position:chr18:4368760-4369103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:13-415
               
               
               Cow position:chr18:30185878-30186283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 235

               
               
               Conread position:14-199
               
               
               Cow position:chr18:10117517-10117342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:14-229
               
               
               Cow position:chr18:36746243-36746447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:14-235
               
               
               Cow position:chr18:3387099-3387321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:14-240
               
               
               Cow position:chr18:7109146-7108922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:14-318
               
               
               Cow position:chr18:21192397-21192695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:14-318
               
               
               Cow position:chr18:22214504-22214201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:14-318
               
               
               Cow position:chr18:56159478-56159180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 78

               
               
               Conread position:14-326
               
               
               Cow position:chr18:6609842-6610151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-331
               
               
               Cow position:chr18:3209742-3209420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 165

               
               
               Conread position:14-333
               
               
               Cow position:chr18:49100352-49100672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-344
               
               
               Cow position:chr18:39115102-39115455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:14-415
               
               
               Cow position:chr18:12775768-12776147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:15-245
               
               
               Cow position:chr18:2863975-2864207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:16-289
               
               
               Cow position:chr18:19363950-19363676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:16-310
               
               
               Cow position:chr18:32773893-32773602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-313
               
               
               Cow position:chr18:3044463-3044150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 96

               
               
               Conread position:18-356
               
               
               Cow position:chr18:51271740-51272063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):144, 61

               
               
               Conread position:19-279
               
               
               Cow position:chr18:11183953-11183695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:19-290
               
               
               Cow position:chr18:20481872-20482132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):215, 6

               
               
               Conread position:19-415
               
               
               Cow position:chr18:29768932-29768540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:20-264
               
               
               Cow position:chr18:219346-219101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:20-307
               
               
               Cow position:chr18:31672502-31672781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 52

               
               
               Conread position:20-316
               
               
               Cow position:chr18:43822940-43823236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:20-318
               
               
               Cow position:chr18:32121057-32121345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:20-318
               
               
               Cow position:chr18:36098222-36097916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 287

               
               
               Conread position:20-332
               
               
               Cow position:chr18:29058488-29058794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:20-415
               
               
               Cow position:chr18:52635060-52635455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 271

               
               
               Conread position:21-282
               
               
               Cow position:chr18:17649729-17649985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-290
               
               
               Cow position:chr18:22411602-22411874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:21-308
               
               
               Cow position:chr18:20126316-20126028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:21-318
               
               
               Cow position:chr18:20641487-20641770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:21-318
               
               
               Cow position:chr18:33299913-33299613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-332
               
               
               Cow position:chr18:19193356-19193647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):118, 64

               
               
               Conread position:21-415
               
               
               Cow position:chr18:45571023-45570650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:22-304
               
               
               Cow position:chr18:48453696-48453422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):195, 76

               
               
               Conread position:22-318
               
               
               Cow position:chr18:37002640-37002344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:22-318
               
               
               Cow position:chr18:55505415-55505116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):117, 62

               
               
               Conread position:22-324
               
               
               Cow position:chr18:3027351-3027656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 55

               
               
               Conread position:22-340
               
               
               Cow position:chr18:29065375-29065679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:22-348
               
               
               Cow position:chr18:50700696-50700350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:23-230
               
               
               Cow position:chr18:48828767-48828975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 84

               
               
               Conread position:23-264
               
               
               Cow position:chr18:33896418-33896654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:23-306
               
               
               Cow position:chr18:12059007-12058744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):212, 14

               
               
               Conread position:23-415
               
               
               Cow position:chr18:38607236-38606862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:24-326
               
               
               Cow position:chr18:51712696-51713002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:24-415
               
               
               Cow position:chr18:7487256-7486878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 61

               
               
               Conread position:26-205
               
               
               Cow position:chr18:51850556-51850728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 39

               
               
               Conread position:26-318
               
               
               Cow position:chr18:44548908-44549192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:26-328
               
               
               Cow position:chr18:13507732-13508024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-337
               
               
               Cow position:chr18:4648743-4649039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):155, 58

               
               
               Conread position:26-349
               
               
               Cow position:chr18:23424926-23424612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 6

               
               
               Conread position:26-352
               
               
               Cow position:chr18:25647244-25647568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:27-279
               
               
               Cow position:chr18:32883310-32883055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:27-318
               
               
               Cow position:chr18:35636343-35636635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:27-415
               
               
               Cow position:chr18:45903891-45904265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):199, 52

               
               
               Conread position:29-240
               
               
               Cow position:chr18:41259077-41259283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:29-318
               
               
               Cow position:chr18:4666208-4666496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:29-331
               
               
               Cow position:chr18:55589484-55589773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:29-357
               
               
               Cow position:chr18:16258862-16258544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:30-192
               
               
               Cow position:chr18:56163632-56163473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-230
               
               
               Cow position:chr18:18961835-18962030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:30-264
               
               
               Cow position:chr18:35777956-35777727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:30-276
               
               
               Cow position:chr18:33008063-33007813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-316
               
               
               Cow position:chr18:2592164-2592456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 59

               
               
               Conread position:30-325
               
               
               Cow position:chr18:267815-268103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 53

               
               
               Conread position:30-368
               
               
               Cow position:chr18:20271019-20271355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-415
               
               
               Cow position:chr18:39001803-39002169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:31-264
               
               
               Cow position:chr18:42966864-42966623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-328
               
               
               Cow position:chr18:47517216-47517503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:33-318
               
               
               Cow position:chr18:601179-601455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:35-282
               
               
               Cow position:chr18:21205359-21205117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:35-396
               
               
               Cow position:chr18:35797619-35797266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:35-414
               
               
               Cow position:chr18:42747587-42747214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 52

               
               
               Conread position:37-329
               
               
               Cow position:chr18:55788994-55789288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):180, 50

               
               
               Conread position:38-285
               
               
               Cow position:chr18:26334818-26335068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:38-311
               
               
               Cow position:chr18:34324958-34325236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:38-318
               
               
               Cow position:chr18:10861437-10861703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:38-415
               
               
               Cow position:chr18:21528395-21528031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:39-318
               
               
               Cow position:chr18:2608734-2609014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):150, 61

               
               
               Conread position:40-318
               
               
               Cow position:chr18:24022378-24022098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):57, 183

               
               
               Conread position:40-318
               
               
               Cow position:chr18:54658302-54658016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:40-318
               
               
               Cow position:chr18:56181471-56181740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):99, 57

               
               
               Conread position:40-415
               
               
               Cow position:chr18:33606621-33606256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:41-415
               
               
               Cow position:chr18:34621371-34621738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:43-264
               
               
               Cow position:chr18:15340457-15340671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:43-275
               
               
               Cow position:chr18:24945818-24946055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:43-318
               
               
               Cow position:chr18:56150656-56150941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:43-360
               
               
               Cow position:chr18:11680711-11680393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:43-422
               
               
               Cow position:chr18:52632420-52632799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):185, 44

               
               
               Conread position:44-228
               
               
               Cow position:chr18:35886871-35886687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:46-256
               
               
               Cow position:chr18:14085448-14085238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 54

               
               
               Conread position:47-293
               
               
               Cow position:chr18:35582114-35582362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:47-315
               
               
               Cow position:chr18:2569785-2569518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:47-317
               
               
               Cow position:chr18:19831293-19831013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:47-318
               
               
               Cow position:chr18:49161453-49161741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):60, 76

               
               
               Conread position:49-368
               
               
               Cow position:chr18:11166962-11166644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:51-240
               
               
               Cow position:chr18:53962670-53962484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:52-231
               
               
               Cow position:chr18:1582292-1582473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:52-328
               
               
               Cow position:chr18:47314302-47314589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:53-318
               
               
               Cow position:chr18:48290461-48290723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):5, 50

               
               
               Conread position:54-415
               
               
               Cow position:chr18:41271062-41270713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:55-231
               
               
               Cow position:chr18:18868730-18868553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:55-263
               
               
               Cow position:chr18:55397285-55397075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:55-318
               
               
               Cow position:chr18:26006777-26006520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:55-326
               
               
               Cow position:chr18:16045023-16045293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:55-339
               
               
               Cow position:chr18:52658387-52658113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:55-363
               
               
               Cow position:chr18:47868440-47868125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:56-318
               
               
               Cow position:chr18:21195367-21195624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):183, 37

               
               
               Conread position:56-326
               
               
               Cow position:chr18:47183303-47183578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:57-335
               
               
               Cow position:chr18:35076366-35076085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:57-341
               
               
               Cow position:chr18:23807887-23808181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:58-332
               
               
               Cow position:chr18:9089672-9089406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):160, 19

               
               
               Conread position:58-362
               
               
               Cow position:chr18:33158934-33158625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:60-279
               
               
               Cow position:chr18:7059192-7058984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:62-316
               
               
               Cow position:chr18:2270535-2270786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:62-318
               
               
               Cow position:chr18:31724908-31725169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:62-318
               
               
               Cow position:chr18:52382672-52382413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:62-329
               
               
               Cow position:chr18:33516818-33516548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:62-413
               
               
               Cow position:chr18:49665183-49665529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):77, 68

               
               
               Conread position:62-415
               
               
               Cow position:chr18:4316280-4315925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:64-315
               
               
               Cow position:chr18:5247545-5247801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:64-332
               
               
               Cow position:chr18:19158994-19159263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:67-308
               
               
               Cow position:chr18:12113408-12113642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:71-332
               
               
               Cow position:chr18:25002914-25003176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:74-264
               
               
               Cow position:chr18:41005102-41005295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:74-300
               
               
               Cow position:chr18:33793668-33793441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:75-254
               
               
               Cow position:chr18:18815712-18815894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:83-316
               
               
               Cow position:chr18:22092730-22092498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:84-307
               
               
               Cow position:chr18:18340016-18340231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:84-318
               
               
               Cow position:chr18:29388172-29387942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-332
               
               
               Cow position:chr18:11832076-11831839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:86-314
               
               
               Cow position:chr18:1586850-1587071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:86-332
               
               
               Cow position:chr18:5189735-5189978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:87-249
               
               
               Cow position:chr18:29188964-29188793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:88-417
               
               
               Cow position:chr18:39279047-39279381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:89-282
               
               
               Cow position:chr18:1588660-1588852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 151

               
               
               Conread position:89-317
               
               
               Cow position:chr18:3132804-3133026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:89-318
               
               
               Cow position:chr18:7322685-7322448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 50

               
               
               Conread position:90-318
               
               
               Cow position:chr18:48036724-48036496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 50

               
               
               Conread position:90-415
               
               
               Cow position:chr18:19977035-19977352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:91-330
               
               
               Cow position:chr18:7966199-7965965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:92-271
               
               
               Cow position:chr18:55715901-55716086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:92-318
               
               
               Cow position:chr18:36445385-36445147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:92-324
               
               
               Cow position:chr18:18957850-18958082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:92-332
               
               
               Cow position:chr18:6881403-6881637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:93-358
               
               
               Cow position:chr18:4578523-4578794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:94-268
               
               
               Cow position:chr18:14871925-14872101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 56

               
               
               Conread position:95-316
               
               
               Cow position:chr18:5457325-5457543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:95-318
               
               
               Cow position:chr18:26586714-26586950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:96-262
               
               
               Cow position:chr18:28823024-28823198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:96-310
               
               
               Cow position:chr18:49543415-49543201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:96-318
               
               
               Cow position:chr18:47873032-47872823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:96-335
               
               
               Cow position:chr18:56361659-56361904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:97-318
               
               
               Cow position:chr18:1594002-1594214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:100-332
               
               
               Cow position:chr18:6275757-6275517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:101-240
               
               
               Cow position:chr18:54056494-54056359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:101-415
               
               
               Cow position:chr18:6290723-6290410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:102-415
               
               
               Cow position:chr18:11191365-11191049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:103-318
               
               
               Cow position:chr18:49655635-49655430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:103-334
               
               
               Cow position:chr18:30341239-30341464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:103-334
               
               
               Cow position:chr18:35058274-35058040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:104-276
               
               
               Cow position:chr18:24636434-24636271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:104-317
               
               
               Cow position:chr18:26937657-26937448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:104-318
               
               
               Cow position:chr18:3098384-3098597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:104-318
               
               
               Cow position:chr18:13359998-13359777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:104-368
               
               
               Cow position:chr18:47930931-47931195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:105-315
               
               
               Cow position:chr18:43564162-43563945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:105-317
               
               
               Cow position:chr18:50082319-50082530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:105-326
               
               
               Cow position:chr18:13172588-13172816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:105-328
               
               
               Cow position:chr18:20864922-20864688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:105-332
               
               
               Cow position:chr18:35827477-35827714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:106-331
               
               
               Cow position:chr18:13293443-13293212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 199

               
               
               Conread position:106-415
               
               
               Cow position:chr18:7649929-7649618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 222

               
               
               Conread position:107-295
               
               
               Cow position:chr18:12023704-12023895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:108-309
               
               
               Cow position:chr18:56183869-56183662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:108-318
               
               
               Cow position:chr18:4539949-4540157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 175

               
               
               Conread position:108-330
               
               
               Cow position:chr18:5487178-5486954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:111-331
               
               
               Cow position:chr18:9818765-9818539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 199

               
               
               Conread position:112-291
               
               
               Cow position:chr18:42432168-42432347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:113-317
               
               
               Cow position:chr18:24048167-24047964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 97

               
               
               Conread position:113-332
               
               
               Cow position:chr18:11233358-11233132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-343
               
               
               Cow position:chr18:17334487-17334727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-411
               
               
               Cow position:chr18:43463483-43463789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 123

               
               
               Conread position:114-338
               
               
               Cow position:chr18:28923914-28924137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:115-333
               
               
               Cow position:chr18:39709812-39709590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:115-415
               
               
               Cow position:chr18:5647171-5646868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):24, 184

               
               
               Conread position:117-318
               
               
               Cow position:chr18:3115384-3115175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:117-318
               
               
               Cow position:chr18:4624510-4624714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:117-326
               
               
               Cow position:chr18:32860565-32860355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:117-330
               
               
               Cow position:chr18:2099428-2099650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 215

               
               
               Conread position:119-318
               
               
               Cow position:chr18:238424-238629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:127-318
               
               
               Cow position:chr18:56163497-56163302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:127-327
               
               
               Cow position:chr18:4529421-4529226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:127-332
               
               
               Cow position:chr18:40694879-40694677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:128-333
               
               
               Cow position:chr18:32244110-32244317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:130-332
               
               
               Cow position:chr18:51178839-51179044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:136-311
               
               
               Cow position:chr18:18976990-18976806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:138-318
               
               
               Cow position:chr18:21721378-21721565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:138-415
               
               
               Cow position:chr18:30248232-30248502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:146-318
               
               
               Cow position:chr18:1733302-1733476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:150-326
               
               
               Cow position:chr18:45395893-45395708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:150-332
               
               
               Cow position:chr18:81644-81457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:150-332
               
               
               Cow position:chr18:9712939-9712756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:150-368
               
               
               Cow position:chr18:3422607-3422385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:150-389
               
               
               Cow position:chr18:11811863-11811629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:151-332
               
               
               Cow position:chr18:48407679-48407490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:157-305
               
               
               Cow position:chr18:13507452-13507600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:169-415
               
               
               Cow position:chr18:36346194-36346441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:173-415
               
               
               Cow position:chr18:26843786-26844020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 127

               
               
               Conread position:177-368
               
               
               Cow position:chr18:8170034-8169839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:179-332
               
               
               Cow position:chr18:36769078-36769224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:1-240
               
               
               Cow position:chr19:51285693-51285449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:1-317
               
               
               Cow position:chr19:1355656-1355350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:1-317
               
               
               Cow position:chr19:55236538-55236230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:1-318
               
               
               Cow position:chr19:9387687-9387370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 70

               
               
               Conread position:1-318
               
               
               Cow position:chr19:25053611-25053938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:1-318
               
               
               Cow position:chr19:29368450-29368135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:1-318
               
               
               Cow position:chr19:29625955-29625641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:1-356
               
               
               Cow position:chr19:17664693-17664339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:2-235
               
               
               Cow position:chr19:25271368-25271593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:2-318
               
               
               Cow position:chr19:39661490-39661808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:3-245
               
               
               Cow position:chr19:10242628-10242397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:3-316
               
               
               Cow position:chr19:53371849-53372158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):134, 72

               
               
               Conread position:3-317
               
               
               Cow position:chr19:2342529-2342213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-318
               
               
               Cow position:chr19:14593105-14592787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):136, 76

               
               
               Conread position:3-325
               
               
               Cow position:chr19:23222679-23222365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:3-415
               
               
               Cow position:chr19:21285032-21285451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:4-336
               
               
               Cow position:chr19:41212010-41212334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 24

               
               
               Conread position:6-311
               
               
               Cow position:chr19:15887274-15887579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:7-203
               
               
               Cow position:chr19:15092091-15092272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:7-212
               
               
               Cow position:chr19:42273805-42274001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:7-226
               
               
               Cow position:chr19:31536172-31535961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-245
               
               
               Cow position:chr19:7838999-7839231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-248
               
               
               Cow position:chr19:15936879-15936653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:7-263
               
               
               Cow position:chr19:25769716-25769452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:7-264
               
               
               Cow position:chr19:22039819-22039561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-264
               
               
               Cow position:chr19:22043307-22043553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-264
               
               
               Cow position:chr19:42904056-42903809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):132, 65

               
               
               Conread position:7-284
               
               
               Cow position:chr19:36245449-36245716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):226, 23

               
               
               Conread position:7-318
               
               
               Cow position:chr19:10545659-10545972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:7-318
               
               
               Cow position:chr19:17795941-17795632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:7-318
               
               
               Cow position:chr19:31595346-31595035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-318
               
               
               Cow position:chr19:31846505-31846806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):174, 77

               
               
               Conread position:7-318
               
               
               Cow position:chr19:50562726-50562422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):133, 113

               
               
               Conread position:7-318
               
               
               Cow position:chr19:53738380-53738071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-327
               
               
               Cow position:chr19:16693986-16694320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 180

               
               
               Conread position:7-329
               
               
               Cow position:chr19:56063384-56063705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:7-332
               
               
               Cow position:chr19:36461483-36461804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-333
               
               
               Cow position:chr19:2770971-2771286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-350
               
               
               Cow position:chr19:1713092-1713435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:7-350
               
               
               Cow position:chr19:19662089-19661746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-352
               
               
               Cow position:chr19:42695041-42694690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-368
               
               
               Cow position:chr19:19924556-19924910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:8-215
               
               
               Cow position:chr19:7404332-7404537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):131, 80

               
               
               Conread position:8-233
               
               
               Cow position:chr19:18317034-18316814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:8-291
               
               
               Cow position:chr19:32754571-32754277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:8-296
               
               
               Cow position:chr19:51751121-51751413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:8-318
               
               
               Cow position:chr19:39576524-39576833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:8-326
               
               
               Cow position:chr19:373148-373461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:8-332
               
               
               Cow position:chr19:6516311-6515983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:8-332
               
               
               Cow position:chr19:7543458-7543144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 96

               
               
               Conread position:8-415
               
               
               Cow position:chr19:9583332-9582953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:9-141
               
               
               Cow position:chr19:39781563-39781434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-151
               
               
               Cow position:chr19:30910187-30910049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-183
               
               
               Cow position:chr19:10676818-10676977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-184
               
               
               Cow position:chr19:2221032-2221204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:9-202
               
               
               Cow position:chr19:39254402-39254597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):100, 76

               
               
               Conread position:9-202
               
               
               Cow position:chr19:43202946-43203133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:9-203
               
               
               Cow position:chr19:9295248-9295069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-205
               
               
               Cow position:chr19:8869622-8869432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):171, 83

               
               
               Conread position:9-209
               
               
               Cow position:chr19:46094593-46094790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-209
               
               
               Cow position:chr19:52185722-52185920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:9-210
               
               
               Cow position:chr19:9408730-9408532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:9-210
               
               
               Cow position:chr19:33237217-33237024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-230
               
               
               Cow position:chr19:11876656-11876875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:9-231
               
               
               Cow position:chr19:42564188-42563963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:9-231
               
               
               Cow position:chr19:55957528-55957749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:9-233
               
               
               Cow position:chr19:11443034-11442806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:9-234
               
               
               Cow position:chr19:50682402-50682615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-235
               
               
               Cow position:chr19:47859272-47859488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-240
               
               
               Cow position:chr19:4329010-4329225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:9-240
               
               
               Cow position:chr19:12709767-12709996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):120, 99

               
               
               Conread position:9-240
               
               
               Cow position:chr19:33290527-33290304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):180, 70

               
               
               Conread position:9-240
               
               
               Cow position:chr19:41517845-41518093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:9-240
               
               
               Cow position:chr19:48960441-48960212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-241
               
               
               Cow position:chr19:53418682-53418445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:9-250
               
               
               Cow position:chr19:3217058-3216825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 60

               
               
               Conread position:9-256
               
               
               Cow position:chr19:22449883-22450134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-259
               
               
               Cow position:chr19:53840559-53840311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:9-262
               
               
               Cow position:chr19:34166410-34166156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):172, 26

               
               
               Conread position:9-264
               
               
               Cow position:chr19:24137306-24137048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:9-265
               
               
               Cow position:chr19:36097264-36097010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:9-266
               
               
               Cow position:chr19:32506074-32506322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 82

               
               
               Conread position:9-290
               
               
               Cow position:chr19:38842516-38842791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:9-291
               
               
               Cow position:chr19:35233609-35233886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:9-293
               
               
               Cow position:chr19:30471311-30471576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:9-293
               
               
               Cow position:chr19:34619985-34620267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-296
               
               
               Cow position:chr19:22799034-22799325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:9-296
               
               
               Cow position:chr19:34001250-34000968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-301
               
               
               Cow position:chr19:22134109-22134395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-303
               
               
               Cow position:chr19:6531928-6531641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 5

               
               
               Conread position:9-307
               
               
               Cow position:chr19:19919418-19919714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-307
               
               
               Cow position:chr19:26976024-26976300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-310
               
               
               Cow position:chr19:3621473-3621172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-311
               
               
               Cow position:chr19:12711832-12712137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 83

               
               
               Conread position:9-311
               
               
               Cow position:chr19:53776530-53776835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:9-315
               
               
               Cow position:chr19:39777109-39777431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:9-317
               
               
               Cow position:chr19:23403601-23403907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):172, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr19:387177-386881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):164, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr19:729703-729994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr19:1153249-1152960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):234, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr19:7473741-7473439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:9-318
               
               
               Cow position:chr19:7637192-7637501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr19:8375259-8375565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-318
               
               
               Cow position:chr19:12601848-12601548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr19:12698362-12698060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-318
               
               
               Cow position:chr19:16096511-16096816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr19:20622697-20622398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):178, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr19:26087238-26086931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr19:30886439-30886130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr19:33469064-33468760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr19:33912581-33912897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-318
               
               
               Cow position:chr19:38637775-38638065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr19:40450061-40449768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr19:43431284-43431585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-318
               
               
               Cow position:chr19:43441211-43440899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:9-324
               
               
               Cow position:chr19:47118457-47118768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-326
               
               
               Cow position:chr19:2734493-2734177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-327
               
               
               Cow position:chr19:33823362-33823044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-328
               
               
               Cow position:chr19:1664147-1664468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):221, 84

               
               
               Conread position:9-330
               
               
               Cow position:chr19:17273697-17273996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-330
               
               
               Cow position:chr19:40051350-40051661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:9-330
               
               
               Cow position:chr19:43058570-43058256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr19:268397-268076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-332
               
               
               Cow position:chr19:4445578-4445898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr19:6609954-6610279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr19:18786279-18786603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:9-332
               
               
               Cow position:chr19:24145061-24144740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-332
               
               
               Cow position:chr19:28014522-28014202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-332
               
               
               Cow position:chr19:38339941-38340252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-333
               
               
               Cow position:chr19:12036465-12036783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-333
               
               
               Cow position:chr19:53657935-53657622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):177, 63

               
               
               Conread position:9-335
               
               
               Cow position:chr19:15438145-15437828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 82

               
               
               Conread position:9-335
               
               
               Cow position:chr19:25652717-25653042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-335
               
               
               Cow position:chr19:39245943-39245619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:9-337
               
               
               Cow position:chr19:10081118-10080786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:9-339
               
               
               Cow position:chr19:46454890-46454566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-340
               
               
               Cow position:chr19:39361188-39360854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-342
               
               
               Cow position:chr19:36845293-36844961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:9-344
               
               
               Cow position:chr19:14348056-14347720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-344
               
               
               Cow position:chr19:41024267-41023939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-346
               
               
               Cow position:chr19:20935797-20935465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-348
               
               
               Cow position:chr19:14992882-14993214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 7

               
               
               Conread position:9-352
               
               
               Cow position:chr19:990371-990707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:9-362
               
               
               Cow position:chr19:11376360-11376713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:9-414
               
               
               Cow position:chr19:4503263-4502854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-415
               
               
               Cow position:chr19:11171173-11171571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-415
               
               
               Cow position:chr19:23304447-23304858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:9-415
               
               
               Cow position:chr19:29070676-29071072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr19:31824970-31825378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr19:42205969-42205578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-416
               
               
               Cow position:chr19:35380509-35380899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 79

               
               
               Conread position:10-200
               
               
               Cow position:chr19:52750716-52750902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:10-236
               
               
               Cow position:chr19:13840407-13840181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:10-325
               
               
               Cow position:chr19:53791388-53791701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:10-326
               
               
               Cow position:chr19:47727528-47727840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:10-330
               
               
               Cow position:chr19:39103970-39104284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:10-331
               
               
               Cow position:chr19:254757-255068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:10-332
               
               
               Cow position:chr19:21378427-21378745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):291, 67

               
               
               Conread position:10-335
               
               
               Cow position:chr19:35742204-35741876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-404
               
               
               Cow position:chr19:42663779-42664163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:11-201
               
               
               Cow position:chr19:7741562-7741748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:11-235
               
               
               Cow position:chr19:22153808-22154034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-246
               
               
               Cow position:chr19:25526325-25526097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:11-264
               
               
               Cow position:chr19:11424274-11424519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 75

               
               
               Conread position:11-282
               
               
               Cow position:chr19:25382646-25382933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:11-300
               
               
               Cow position:chr19:11191579-11191867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-317
               
               
               Cow position:chr19:5912919-5913213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:11-318
               
               
               Cow position:chr19:12747735-12748029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-318
               
               
               Cow position:chr19:52381563-52381268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:11-330
               
               
               Cow position:chr19:10232368-10232678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:11-332
               
               
               Cow position:chr19:8033789-8033461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:11-332
               
               
               Cow position:chr19:19804488-19804810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:11-332
               
               
               Cow position:chr19:21199180-21198849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-332
               
               
               Cow position:chr19:55952111-55952421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:11-346
               
               
               Cow position:chr19:35064152-35064476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):126, 63

               
               
               Conread position:11-352
               
               
               Cow position:chr19:36059979-36059634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 82

               
               
               Conread position:11-415
               
               
               Cow position:chr19:31874162-31873754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:11-415
               
               
               Cow position:chr19:36125628-36125235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:11-415
               
               
               Cow position:chr19:47110082-47109679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:12-329
               
               
               Cow position:chr19:21065802-21065504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:13-312
               
               
               Cow position:chr19:55590271-55589974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):220, 24

               
               
               Conread position:13-317
               
               
               Cow position:chr19:21335560-21335875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:13-368
               
               
               Cow position:chr19:43418444-43418107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:14-192
               
               
               Cow position:chr19:40026892-40027065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:14-221
               
               
               Cow position:chr19:4800780-4800580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:14-232
               
               
               Cow position:chr19:55394939-55394732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-235
               
               
               Cow position:chr19:33116635-33116420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):152, 73

               
               
               Conread position:14-240
               
               
               Cow position:chr19:8270562-8270785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:14-276
               
               
               Cow position:chr19:43292089-43291825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-318
               
               
               Cow position:chr19:10755346-10755047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):172, 24

               
               
               Conread position:14-330
               
               
               Cow position:chr19:36722350-36722056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):219, 77

               
               
               Conread position:14-332
               
               
               Cow position:chr19:18750037-18750358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:14-415
               
               
               Cow position:chr19:32457682-32457290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:15-305
               
               
               Cow position:chr19:36976874-36977167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):124, 49

               
               
               Conread position:16-187
               
               
               Cow position:chr19:10971061-10971223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:16-332
               
               
               Cow position:chr19:35540331-35540026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:19-316
               
               
               Cow position:chr19:18788075-18788368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:19-318
               
               
               Cow position:chr19:39622755-39623049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):68, 189

               
               
               Conread position:19-333
               
               
               Cow position:chr19:3084172-3084486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:20-187
               
               
               Cow position:chr19:12094043-12093874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:21-208
               
               
               Cow position:chr19:18153196-18153019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:21-282
               
               
               Cow position:chr19:35344958-35344708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-314
               
               
               Cow position:chr19:51185455-51185166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-318
               
               
               Cow position:chr19:10213703-10213407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:21-318
               
               
               Cow position:chr19:41946214-41945926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-330
               
               
               Cow position:chr19:25726850-25727153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:21-368
               
               
               Cow position:chr19:8332331-8331981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):209, 66

               
               
               Conread position:21-415
               
               
               Cow position:chr19:33033404-33033805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:21-415
               
               
               Cow position:chr19:37646805-37647193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:22-303
               
               
               Cow position:chr19:35762219-35762504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:22-335
               
               
               Cow position:chr19:14253662-14253353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:23-237
               
               
               Cow position:chr19:7884609-7884404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):158, 72

               
               
               Conread position:23-274
               
               
               Cow position:chr19:6079329-6079579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:23-318
               
               
               Cow position:chr19:20661386-20661681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:23-332
               
               
               Cow position:chr19:39057271-39056967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 54

               
               
               Conread position:24-318
               
               
               Cow position:chr19:4448571-4448270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):114, 73

               
               
               Conread position:24-318
               
               
               Cow position:chr19:39751508-39751217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):206, 20

               
               
               Conread position:25-221
               
               
               Cow position:chr19:25807273-25807465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:25-264
               
               
               Cow position:chr19:20687074-20686834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:25-318
               
               
               Cow position:chr19:1968278-1968568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):114, 75

               
               
               Conread position:26-296
               
               
               Cow position:chr19:13129902-13129640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:26-318
               
               
               Cow position:chr19:10186531-10186236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 66

               
               
               Conread position:26-318
               
               
               Cow position:chr19:44757591-44757870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:26-331
               
               
               Cow position:chr19:34425608-34425309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:26-332
               
               
               Cow position:chr19:23786220-23785910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-418
               
               
               Cow position:chr19:23005330-23005721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:27-245
               
               
               Cow position:chr19:15442786-15442579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:27-310
               
               
               Cow position:chr19:32451110-32450822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 70

               
               
               Conread position:27-316
               
               
               Cow position:chr19:14928631-14928932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 51

               
               
               Conread position:27-323
               
               
               Cow position:chr19:44125674-44125380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:29-318
               
               
               Cow position:chr19:30746431-30746138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:29-332
               
               
               Cow position:chr19:2577589-2577298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):202, 56

               
               
               Conread position:30-222
               
               
               Cow position:chr19:21816989-21816798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:30-245
               
               
               Cow position:chr19:10173090-10173303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:30-258
               
               
               Cow position:chr19:3246028-3246250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:30-296
               
               
               Cow position:chr19:47187033-47187294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):151, 49

               
               
               Conread position:30-316
               
               
               Cow position:chr19:3811993-3812277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):194, 42

               
               
               Conread position:30-318
               
               
               Cow position:chr19:42240269-42240555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):47, 42

               
               
               Conread position:30-318
               
               
               Cow position:chr19:53542869-53543143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:30-356
               
               
               Cow position:chr19:33882149-33882459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):204, 45

               
               
               Conread position:30-396
               
               
               Cow position:chr19:2260108-2260465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:30-418
               
               
               Cow position:chr19:6687977-6688361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:31-215
               
               
               Cow position:chr19:46822477-46822302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:31-229
               
               
               Cow position:chr19:38111490-38111301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:31-290
               
               
               Cow position:chr19:8864770-8864511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:31-306
               
               
               Cow position:chr19:25864903-25865176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:31-309
               
               
               Cow position:chr19:25851811-25852087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:31-334
               
               
               Cow position:chr19:35622378-35622086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-335
               
               
               Cow position:chr19:46918871-46918560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:31-350
               
               
               Cow position:chr19:25851467-25851784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 46

               
               
               Conread position:31-415
               
               
               Cow position:chr19:8839628-8839245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:33-373
               
               
               Cow position:chr19:13316399-13316723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:34-413
               
               
               Cow position:chr19:13267170-13267537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 59

               
               
               Conread position:34-415
               
               
               Cow position:chr19:8496278-8496653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:35-296
               
               
               Cow position:chr19:44490115-44489850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:35-296
               
               
               Cow position:chr19:53243458-53243714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:35-318
               
               
               Cow position:chr19:15863030-15863302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):204, 52

               
               
               Conread position:35-324
               
               
               Cow position:chr19:36380271-36379979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:35-332
               
               
               Cow position:chr19:27180246-27180537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:35-342
               
               
               Cow position:chr19:10172022-10171712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:35-415
               
               
               Cow position:chr19:1580570-1580933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:35-434
               
               
               Cow position:chr19:39698081-39697701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):199, 103

               
               
               Conread position:37-307
               
               
               Cow position:chr19:2589524-2589258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:38-333
               
               
               Cow position:chr19:8211822-8212120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:40-204
               
               
               Cow position:chr19:7492841-7492684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:40-332
               
               
               Cow position:chr19:21092781-21092502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:43-241
               
               
               Cow position:chr19:24759873-24760068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:43-310
               
               
               Cow position:chr19:20310624-20310886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:44-328
               
               
               Cow position:chr19:43702701-43702976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):205, 35

               
               
               Conread position:47-218
               
               
               Cow position:chr19:19174157-19173984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:47-236
               
               
               Cow position:chr19:36190259-36190061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:47-236
               
               
               Cow position:chr19:39587520-39587703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:47-311
               
               
               Cow position:chr19:10286901-10286650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):184, 44

               
               
               Conread position:47-311
               
               
               Cow position:chr19:51334686-51334411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:47-318
               
               
               Cow position:chr19:38596623-38596351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:47-326
               
               
               Cow position:chr19:33932143-33932413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:47-348
               
               
               Cow position:chr19:19561521-19561212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:47-414
               
               
               Cow position:chr19:4339911-4340261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):143, 41

               
               
               Conread position:49-318
               
               
               Cow position:chr19:33307104-33306833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:49-332
               
               
               Cow position:chr19:53645422-53645692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):140, 39

               
               
               Conread position:50-310
               
               
               Cow position:chr19:31380985-31381252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:55-245
               
               
               Cow position:chr19:4722023-4722222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 127

               
               
               Conread position:55-248
               
               
               Cow position:chr19:2041867-2041666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:55-254
               
               
               Cow position:chr19:1552233-1552035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:55-269
               
               
               Cow position:chr19:42746340-42746547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-291
               
               
               Cow position:chr19:35808139-35808358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-313
               
               
               Cow position:chr19:13390911-13390661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:55-318
               
               
               Cow position:chr19:10786371-10786623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:55-326
               
               
               Cow position:chr19:6417594-6417328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-329
               
               
               Cow position:chr19:19673414-19673144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:55-362
               
               
               Cow position:chr19:1898240-1898540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:55-415
               
               
               Cow position:chr19:42706362-42706721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):184, 38

               
               
               Conread position:56-293
               
               
               Cow position:chr19:34911890-34911646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:56-326
               
               
               Cow position:chr19:17478963-17479232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:56-331
               
               
               Cow position:chr19:5656112-5656387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:57-318
               
               
               Cow position:chr19:27348269-27348525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:57-333
               
               
               Cow position:chr19:52773176-52773455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:62-335
               
               
               Cow position:chr19:42465512-42465769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):180, 40

               
               
               Conread position:63-418
               
               
               Cow position:chr19:11816920-11817285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:65-296
               
               
               Cow position:chr19:29115741-29115523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:65-315
               
               
               Cow position:chr19:2138117-2138366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:65-335
               
               
               Cow position:chr19:4251983-4252253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:73-328
               
               
               Cow position:chr19:20700074-20699815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:76-311
               
               
               Cow position:chr19:46180831-46181072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:80-205
               
               
               Cow position:chr19:30552007-30551881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:80-318
               
               
               Cow position:chr19:29627399-29627638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 157

               
               
               Conread position:83-318
               
               
               Cow position:chr19:21363464-21363705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 57

               
               
               Conread position:83-318
               
               
               Cow position:chr19:22765597-22765353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:83-330
               
               
               Cow position:chr19:20670919-20671177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:84-311
               
               
               Cow position:chr19:20693472-20693242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 213

               
               
               Conread position:84-317
               
               
               Cow position:chr19:38392777-38392534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-318
               
               
               Cow position:chr19:36176721-36176482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:84-331
               
               
               Cow position:chr19:54294613-54294860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:85-318
               
               
               Cow position:chr19:25999597-25999368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:85-333
               
               
               Cow position:chr19:30533909-30533663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:87-296
               
               
               Cow position:chr19:55544709-55544503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:87-318
               
               
               Cow position:chr19:5433582-5433825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:87-415
               
               
               Cow position:chr19:37562034-37562358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:88-222
               
               
               Cow position:chr19:25131585-25131448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:89-279
               
               
               Cow position:chr19:28921794-28921598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:89-416
               
               
               Cow position:chr19:3496203-3496550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:90-252
               
               
               Cow position:chr19:42069977-42070138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:90-318
               
               
               Cow position:chr19:4600042-4599819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:91-303
               
               
               Cow position:chr19:30052039-30052249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:91-314
               
               
               Cow position:chr19:51267863-51267635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:91-317
               
               
               Cow position:chr19:630901-630683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:91-332
               
               
               Cow position:chr19:4195696-4195451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 49

               
               
               Conread position:92-293
               
               
               Cow position:chr19:31762995-31762785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:92-315
               
               
               Cow position:chr19:6049701-6049922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:92-318
               
               
               Cow position:chr19:15068036-15068257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:93-333
               
               
               Cow position:chr19:47671715-47671471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:94-276
               
               
               Cow position:chr19:3489465-3489275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 62

               
               
               Conread position:94-318
               
               
               Cow position:chr19:35782166-35782396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:97-317
               
               
               Cow position:chr19:50646624-50646848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:98-318
               
               
               Cow position:chr19:10093255-10093031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:99-318
               
               
               Cow position:chr19:28451365-28451141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:101-318
               
               
               Cow position:chr19:44838960-44839163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):176, 24

               
               
               Conread position:101-330
               
               
               Cow position:chr19:32955846-32955608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-415
               
               
               Cow position:chr19:42417825-42417514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:103-352
               
               
               Cow position:chr19:5648699-5648949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:104-296
               
               
               Cow position:chr19:48409466-48409273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-318
               
               
               Cow position:chr19:48475099-48474879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:105-277
               
               
               Cow position:chr19:37423314-37423499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-331
               
               
               Cow position:chr19:24358281-24358500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:105-332
               
               
               Cow position:chr19:1901043-1901279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-338
               
               
               Cow position:chr19:47772968-47773195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:105-348
               
               
               Cow position:chr19:2735015-2735272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:105-415
               
               
               Cow position:chr19:31378647-31378968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:106-318
               
               
               Cow position:chr19:43517186-43516972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:106-326
               
               
               Cow position:chr19:56383092-56382875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:107-317
               
               
               Cow position:chr19:48722982-48722763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 208

               
               
               Conread position:107-318
               
               
               Cow position:chr19:25572399-25572182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-328
               
               
               Cow position:chr19:39794916-39794683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-415
               
               
               Cow position:chr19:22779156-22778853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 233

               
               
               Conread position:108-318
               
               
               Cow position:chr19:32177750-32177974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:108-318
               
               
               Cow position:chr19:41584926-41584710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:108-335
               
               
               Cow position:chr19:27104688-27104469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:110-317
               
               
               Cow position:chr19:38396329-38396534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:113-318
               
               
               Cow position:chr19:4537470-4537676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 187

               
               
               Conread position:115-318
               
               
               Cow position:chr19:19431174-19430967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:115-332
               
               
               Cow position:chr19:18015773-18015983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:117-331
               
               
               Cow position:chr19:28038695-28038899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:117-332
               
               
               Cow position:chr19:53037210-53037431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 188

               
               
               Conread position:128-326
               
               
               Cow position:chr19:7612552-7612355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:128-331
               
               
               Cow position:chr19:25025563-25025766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:128-415
               
               
               Cow position:chr19:34955762-34956050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 218

               
               
               Conread position:132-291
               
               
               Cow position:chr19:24956517-24956679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:133-332
               
               
               Cow position:chr19:24062217-24062019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr19:7492356-7492143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:138-311
               
               
               Cow position:chr19:3178021-3177851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:138-327
               
               
               Cow position:chr19:4587800-4587992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 163

               
               
               Conread position:138-414
               
               
               Cow position:chr19:19499633-19499904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 67

               
               
               Conread position:139-341
               
               
               Cow position:chr19:20432856-20433067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:142-329
               
               
               Cow position:chr19:33281282-33281096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:150-318
               
               
               Cow position:chr19:25086441-25086278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:150-318
               
               
               Cow position:chr19:30232637-30232469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):82, 147

               
               
               Conread position:150-327
               
               
               Cow position:chr19:8128229-8128043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:150-334
               
               
               Cow position:chr19:16594805-16594621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:150-344
               
               
               Cow position:chr19:55210558-55210747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:155-318
               
               
               Cow position:chr19:33622211-33622042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:162-316
               
               
               Cow position:chr19:46159952-46159795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:164-318
               
               
               Cow position:chr19:24935919-24936076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:165-405
               
               
               Cow position:chr19:19246678-19246437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:165-415
               
               
               Cow position:chr19:52305010-52305272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:169-415
               
               
               Cow position:chr19:21115198-21114954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 172

               
               
               Conread position:170-328
               
               
               Cow position:chr19:38756184-38756024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:175-364
               
               
               Cow position:chr19:11145726-11145920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:178-332
               
               
               Cow position:chr19:21042999-21042839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:179-330
               
               
               Cow position:chr19:7066066-7065917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:179-351
               
               
               Cow position:chr19:42215986-42215814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:182-358
               
               
               Cow position:chr19:23398879-23399057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:182-415
               
               
               Cow position:chr19:3858203-3858435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 125

               
               
               Conread position:184-317
               
               
               Cow position:chr19:37633474-37633615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:186-332
               
               
               Cow position:chr19:25041455-25041606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:203-415
               
               
               Cow position:chr19:9294124-9293911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:1-165
               
               
               Cow position:chr2:65036216-65036378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:1-279
               
               
               Cow position:chr2:24720353-24720084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:1-279
               
               
               Cow position:chr2:69823654-69823374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:1-308
               
               
               Cow position:chr2:39564418-39564111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:1-315
               
               
               Cow position:chr2:45666097-45665784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:1-317
               
               
               Cow position:chr2:41710917-41710630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:1-318
               
               
               Cow position:chr2:39281260-39280940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:1-318
               
               
               Cow position:chr2:70163664-70163357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:1-318
               
               
               Cow position:chr2:70704323-70704002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:1-332
               
               
               Cow position:chr2:39078443-39078108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-332
               
               
               Cow position:chr2:47115855-47116179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:1-332
               
               
               Cow position:chr2:66916641-66916989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 120

               
               
               Conread position:1-332
               
               
               Cow position:chr2:80242118-80242455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 165

               
               
               Conread position:1-335
               
               
               Cow position:chr2:13582648-13582315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:1-351
               
               
               Cow position:chr2:10867827-10868178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:1-415
               
               
               Cow position:chr2:21644386-21644794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:2-318
               
               
               Cow position:chr2:1304011-1303700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):137, 86

               
               
               Conread position:2-318
               
               
               Cow position:chr2:27145306-27145616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:2-318
               
               
               Cow position:chr2:62818644-62818968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):137, 78

               
               
               Conread position:2-368
               
               
               Cow position:chr2:42309493-42309857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:2-415
               
               
               Cow position:chr2:53000571-53000164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:3-188
               
               
               Cow position:chr2:33988256-33988431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:3-237
               
               
               Cow position:chr2:84970652-84970874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:3-296
               
               
               Cow position:chr2:25597434-25597720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 69

               
               
               Conread position:3-311
               
               
               Cow position:chr2:53851497-53851188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):136, 20

               
               
               Conread position:3-316
               
               
               Cow position:chr2:49480532-49480849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:3-318
               
               
               Cow position:chr2:54890381-54890069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 76

               
               
               Conread position:3-318
               
               
               Cow position:chr2:72598865-72598552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:3-326
               
               
               Cow position:chr2:14465497-14465811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 83

               
               
               Conread position:3-332
               
               
               Cow position:chr2:58536934-58537248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 121

               
               
               Conread position:3-346
               
               
               Cow position:chr2:70752857-70752512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-415
               
               
               Cow position:chr2:21211602-21211189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:4-318
               
               
               Cow position:chr2:33402426-33402741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):181, 26

               
               
               Conread position:4-318
               
               
               Cow position:chr2:46994703-46995004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):135, 9

               
               
               Conread position:4-361
               
               
               Cow position:chr2:11617155-11616804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 75

               
               
               Conread position:6-316
               
               
               Cow position:chr2:64292661-64292949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:6-332
               
               
               Cow position:chr2:54700514-54700183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:7-147
               
               
               Cow position:chr2:60429338-60429202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-188
               
               
               Cow position:chr2:25966834-25967011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:7-216
               
               
               Cow position:chr2:44005013-44004811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):182, 25

               
               
               Conread position:7-221
               
               
               Cow position:chr2:69367070-69367282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:7-240
               
               
               Cow position:chr2:2382500-2382729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-240
               
               
               Cow position:chr2:40313423-40313204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:7-241
               
               
               Cow position:chr2:24434223-24434447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:7-241
               
               
               Cow position:chr2:63331747-63331983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 77

               
               
               Conread position:7-264
               
               
               Cow position:chr2:41019152-41019415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:7-268
               
               
               Cow position:chr2:26851220-26850960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 10

               
               
               Conread position:7-293
               
               
               Cow position:chr2:46909379-46909665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:7-301
               
               
               Cow position:chr2:1651461-1651168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 42

               
               
               Conread position:7-303
               
               
               Cow position:chr2:64323297-64323014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:7-311
               
               
               Cow position:chr2:10356616-10356920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:7-318
               
               
               Cow position:chr2:30642606-30642922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 87

               
               
               Conread position:7-318
               
               
               Cow position:chr2:42927393-42927703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-318
               
               
               Cow position:chr2:47990494-47990188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-318
               
               
               Cow position:chr2:55632833-55632523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:7-318
               
               
               Cow position:chr2:64830895-64830603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:7-332
               
               
               Cow position:chr2:70945461-70945132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):217, 77

               
               
               Conread position:7-334
               
               
               Cow position:chr2:2589892-2590210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 49

               
               
               Conread position:7-342
               
               
               Cow position:chr2:29382622-29382949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:7-414
               
               
               Cow position:chr2:45259004-45259416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):57, 231

               
               
               Conread position:8-209
               
               
               Cow position:chr2:32660233-32660035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 96

               
               
               Conread position:8-217
               
               
               Cow position:chr2:80770170-80769971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:8-307
               
               
               Cow position:chr2:65269634-65269939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):131, 92

               
               
               Conread position:8-318
               
               
               Cow position:chr2:1756097-1755785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):106, 80

               
               
               Conread position:8-318
               
               
               Cow position:chr2:26102823-26102528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):181, 80

               
               
               Conread position:8-326
               
               
               Cow position:chr2:63273889-63274217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):224, 47

               
               
               Conread position:8-340
               
               
               Cow position:chr2:45880720-45881041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 94

               
               
               Conread position:9-150
               
               
               Cow position:chr2:39223712-39223570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 97

               
               
               Conread position:9-165
               
               
               Cow position:chr2:40410200-40410046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-174
               
               
               Cow position:chr2:46971177-46971015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-177
               
               
               Cow position:chr2:19137835-19138000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-178
               
               
               Cow position:chr2:8798095-8797932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-179
               
               
               Cow position:chr2:50352948-50352779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:9-189
               
               
               Cow position:chr2:30351651-30351820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr2:29734877-29734701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-196
               
               
               Cow position:chr2:62861643-62861463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:9-196
               
               
               Cow position:chr2:64131473-64131296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:9-200
               
               
               Cow position:chr2:58135337-58135526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-200
               
               
               Cow position:chr2:76861401-76861592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-204
               
               
               Cow position:chr2:45281705-45281518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 101

               
               
               Conread position:9-205
               
               
               Cow position:chr2:47147964-47147774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:9-209
               
               
               Cow position:chr2:44025432-44025233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-215
               
               
               Cow position:chr2:51098030-51098235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-219
               
               
               Cow position:chr2:54968063-54967857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 72

               
               
               Conread position:9-222
               
               
               Cow position:chr2:69199265-69199467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):129, 54

               
               
               Conread position:9-226
               
               
               Cow position:chr2:41622536-41622327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:9-231
               
               
               Cow position:chr2:34749929-34750141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-231
               
               
               Cow position:chr2:70495325-70495114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-233
               
               
               Cow position:chr2:2931109-2930890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:9-235
               
               
               Cow position:chr2:31460279-31460495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:9-237
               
               
               Cow position:chr2:67313634-67313856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-237
               
               
               Cow position:chr2:70781145-70780929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-240
               
               
               Cow position:chr2:47055962-47055738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):180, 21

               
               
               Conread position:9-241
               
               
               Cow position:chr2:12686735-12686957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:9-245
               
               
               Cow position:chr2:56248845-56248620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):151, 32

               
               
               Conread position:9-245
               
               
               Cow position:chr2:61421113-61421348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-247
               
               
               Cow position:chr2:26170800-26170566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:9-255
               
               
               Cow position:chr2:17328805-17328560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-262
               
               
               Cow position:chr2:5130399-5130645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):176, 83

               
               
               Conread position:9-262
               
               
               Cow position:chr2:6901831-6901594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:9-263
               
               
               Cow position:chr2:16505421-16505674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-263
               
               
               Cow position:chr2:43790155-43789908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-264
               
               
               Cow position:chr2:7383633-7383879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-264
               
               
               Cow position:chr2:30955784-30956037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-264
               
               
               Cow position:chr2:46120587-46120835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-265
               
               
               Cow position:chr2:18997774-18997526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-266
               
               
               Cow position:chr2:29121937-29121686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-267
               
               
               Cow position:chr2:3308972-3309230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:9-276
               
               
               Cow position:chr2:29159961-29159692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):171, 84

               
               
               Conread position:9-279
               
               
               Cow position:chr2:5300651-5300374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 132

               
               
               Conread position:9-279
               
               
               Cow position:chr2:6232662-6232404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:9-279
               
               
               Cow position:chr2:9325054-9324779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-279
               
               
               Cow position:chr2:42936154-42936426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:9-279
               
               
               Cow position:chr2:46051250-46051516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 26

               
               
               Conread position:9-280
               
               
               Cow position:chr2:1487226-1486965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-280
               
               
               Cow position:chr2:44232398-44232669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-282
               
               
               Cow position:chr2:47624352-47624614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-288
               
               
               Cow position:chr2:38362310-38362594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:9-288
               
               
               Cow position:chr2:68970794-68970511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:9-289
               
               
               Cow position:chr2:9767379-9767653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:9-290
               
               
               Cow position:chr2:13604524-13604241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-290
               
               
               Cow position:chr2:33531893-33532172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:9-290
               
               
               Cow position:chr2:50565989-50565702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 105

               
               
               Conread position:9-290
               
               
               Cow position:chr2:69419530-69419802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 75

               
               
               Conread position:9-290
               
               
               Cow position:chr2:69747561-69747845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-290
               
               
               Cow position:chr2:72183437-72183714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):215, 83

               
               
               Conread position:9-291
               
               
               Cow position:chr2:40728405-40728133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:9-292
               
               
               Cow position:chr2:54971234-54970958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:9-293
               
               
               Cow position:chr2:5999002-5998724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-293
               
               
               Cow position:chr2:80275239-80275519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-296
               
               
               Cow position:chr2:26806062-26806344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:9-296
               
               
               Cow position:chr2:34535102-34535388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-296
               
               
               Cow position:chr2:46033390-46033101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-296
               
               
               Cow position:chr2:80963595-80963875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-301
               
               
               Cow position:chr2:36017359-36017649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:9-303
               
               
               Cow position:chr2:15250237-15249946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-305
               
               
               Cow position:chr2:17114675-17114975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:9-305
               
               
               Cow position:chr2:36105325-36105031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:9-307
               
               
               Cow position:chr2:7524077-7524381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-307
               
               
               Cow position:chr2:9687518-9687817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-307
               
               
               Cow position:chr2:38273605-38273302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-307
               
               
               Cow position:chr2:53430774-53430486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-308
               
               
               Cow position:chr2:62644642-62644357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-309
               
               
               Cow position:chr2:69250614-69250919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-310
               
               
               Cow position:chr2:9063328-9063026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-310
               
               
               Cow position:chr2:51824979-51824684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:9-311
               
               
               Cow position:chr2:11806374-11806074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-311
               
               
               Cow position:chr2:17966974-17967279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-311
               
               
               Cow position:chr2:46262496-46262199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:9-311
               
               
               Cow position:chr2:56828509-56828813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):6, 86

               
               
               Conread position:9-311
               
               
               Cow position:chr2:59180129-59179811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 187

               
               
               Conread position:9-311
               
               
               Cow position:chr2:80116152-80115859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 54

               
               
               Conread position:9-314
               
               
               Cow position:chr2:6039068-6038756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:9-315
               
               
               Cow position:chr2:47403263-47402956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-316
               
               
               Cow position:chr2:16839691-16839383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-316
               
               
               Cow position:chr2:48361627-48361319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-316
               
               
               Cow position:chr2:56350862-56351167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-316
               
               
               Cow position:chr2:61485678-61485386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr2:85339403-85339710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-317
               
               
               Cow position:chr2:14089848-14089529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-318
               
               
               Cow position:chr2:192411-192711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr2:11697181-11696878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):217, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr2:17444853-17444542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:9-318
               
               
               Cow position:chr2:17940233-17940538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-318
               
               
               Cow position:chr2:21003229-21002935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr2:21382798-21383109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr2:31457548-31457236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:9-318
               
               
               Cow position:chr2:31749914-31750221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-318
               
               
               Cow position:chr2:36077407-36077096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:9-318
               
               
               Cow position:chr2:36424076-36423762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr2:36436262-36435949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr2:38658732-38659034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr2:39584504-39584199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 74

               
               
               Conread position:9-318
               
               
               Cow position:chr2:41954941-41954627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr2:47073242-47072939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr2:47097888-47098186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr2:56846802-56846500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr2:57393237-57393547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):180, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr2:65928787-65929091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:9-318
               
               
               Cow position:chr2:70539317-70539628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:9-318
               
               
               Cow position:chr2:70896089-70895777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr2:82580873-82581183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-322
               
               
               Cow position:chr2:28710944-28711243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):238, 82

               
               
               Conread position:9-324
               
               
               Cow position:chr2:13684755-13684448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:9-324
               
               
               Cow position:chr2:81388745-81388432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:9-325
               
               
               Cow position:chr2:61974852-61974535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-326
               
               
               Cow position:chr2:34695300-34694978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-328
               
               
               Cow position:chr2:549275-549578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:9-328
               
               
               Cow position:chr2:11734578-11734250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:9-328
               
               
               Cow position:chr2:15059007-15059329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr2:51594820-51594503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr2:82262321-82262641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-329
               
               
               Cow position:chr2:4383842-4384155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-330
               
               
               Cow position:chr2:10655801-10656101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-330
               
               
               Cow position:chr2:18621471-18621142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:9-330
               
               
               Cow position:chr2:18858089-18858398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-330
               
               
               Cow position:chr2:38205703-38206029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 89

               
               
               Conread position:9-330
               
               
               Cow position:chr2:46227514-46227202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):230, 58

               
               
               Conread position:9-331
               
               
               Cow position:chr2:39501094-39500767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:9-331
               
               
               Cow position:chr2:39815229-39815551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-331
               
               
               Cow position:chr2:45624069-45623760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-331
               
               
               Cow position:chr2:77157293-77157619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr2:777631-777961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr2:14826331-14826018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):179, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr2:22371897-22372211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr2:29269127-29268798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 209

               
               
               Conread position:9-332
               
               
               Cow position:chr2:33497149-33497470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr2:37009465-37009152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):222, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr2:38259398-38259718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:9-332
               
               
               Cow position:chr2:38662642-38662942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):206, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr2:41461424-41461100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 95

               
               
               Conread position:9-332
               
               
               Cow position:chr2:42192493-42192178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr2:42255490-42255165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr2:42608121-42607805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr2:44170614-44170290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:9-332
               
               
               Cow position:chr2:45912577-45912904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr2:52332582-52332896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr2:57939736-57939416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:9-332
               
               
               Cow position:chr2:69676476-69676801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:9-332
               
               
               Cow position:chr2:71800029-71800357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):177, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr2:72528015-72527686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr2:74260513-74260193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:9-333
               
               
               Cow position:chr2:42801093-42800780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-333
               
               
               Cow position:chr2:43596101-43596437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:9-334
               
               
               Cow position:chr2:12237192-12237507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):213, 26

               
               
               Conread position:9-334
               
               
               Cow position:chr2:28303374-28303058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-335
               
               
               Cow position:chr2:43624481-43624796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:9-340
               
               
               Cow position:chr2:22859584-22859911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 66

               
               
               Conread position:9-342
               
               
               Cow position:chr2:14710065-14710382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):172, 46

               
               
               Conread position:9-342
               
               
               Cow position:chr2:32416805-32417133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:9-348
               
               
               Cow position:chr2:79903-80241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-350
               
               
               Cow position:chr2:32402914-32403247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:9-351
               
               
               Cow position:chr2:13354731-13354390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-357
               
               
               Cow position:chr2:41248626-41248277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-358
               
               
               Cow position:chr2:27173423-27173075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-358
               
               
               Cow position:chr2:46189041-46189382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-364
               
               
               Cow position:chr2:28653481-28653830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 60

               
               
               Conread position:9-364
               
               
               Cow position:chr2:46745978-46745621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-368
               
               
               Cow position:chr2:45535521-45535168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-369
               
               
               Cow position:chr2:36878163-36878521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-373
               
               
               Cow position:chr2:28257520-28257166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-413
               
               
               Cow position:chr2:49608647-49608252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-414
               
               
               Cow position:chr2:39662760-39662358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:9-415
               
               
               Cow position:chr2:13580291-13579902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr2:15298593-15298200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:9-415
               
               
               Cow position:chr2:19494269-19493863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr2:20900408-20900810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):180, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr2:26438670-26439067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-415
               
               
               Cow position:chr2:32431681-32432072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 47

               
               
               Conread position:9-415
               
               
               Cow position:chr2:33262561-33262957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):155, 19

               
               
               Conread position:9-415
               
               
               Cow position:chr2:36963577-36963194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:9-415
               
               
               Cow position:chr2:39263542-39263149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr2:44081492-44081108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr2:45499147-45499538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr2:45935906-45936295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-415
               
               
               Cow position:chr2:51638601-51638205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-415
               
               
               Cow position:chr2:54654560-54654964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:9-415
               
               
               Cow position:chr2:58074289-58074690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-415
               
               
               Cow position:chr2:68109686-68110083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr2:76110451-76110044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-422
               
               
               Cow position:chr2:19212000-19212391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-446
               
               
               Cow position:chr2:65932020-65931601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:10-209
               
               
               Cow position:chr2:19156130-19156324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:10-264
               
               
               Cow position:chr2:82019073-82019321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:10-268
               
               
               Cow position:chr2:24007477-24007222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):229, 15

               
               
               Conread position:10-317
               
               
               Cow position:chr2:28118554-28118250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 6

               
               
               Conread position:10-318
               
               
               Cow position:chr2:35092642-35092940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):211, 39

               
               
               Conread position:10-324
               
               
               Cow position:chr2:63288097-63288407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-325
               
               
               Cow position:chr2:41057469-41057760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:10-326
               
               
               Cow position:chr2:25283169-25282847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:10-332
               
               
               Cow position:chr2:4254481-4254802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 62

               
               
               Conread position:10-332
               
               
               Cow position:chr2:46243964-46244292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:10-332
               
               
               Cow position:chr2:68487952-68488275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 57

               
               
               Conread position:10-341
               
               
               Cow position:chr2:50408727-50408416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:10-415
               
               
               Cow position:chr2:2673585-2673184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 64

               
               
               Conread position:10-415
               
               
               Cow position:chr2:76340597-76341007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 96

               
               
               Conread position:11-179
               
               
               Cow position:chr2:67927742-67927904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:11-198
               
               
               Cow position:chr2:17409954-17410133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:11-240
               
               
               Cow position:chr2:42970167-42969935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:11-245
               
               
               Cow position:chr2:80595261-80595488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:11-278
               
               
               Cow position:chr2:21380349-21380615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-279
               
               
               Cow position:chr2:41145368-41145097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:11-291
               
               
               Cow position:chr2:70664070-70663788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 92

               
               
               Conread position:11-293
               
               
               Cow position:chr2:44229641-44229917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:11-296
               
               
               Cow position:chr2:26042187-26042469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-315
               
               
               Cow position:chr2:46331116-46330807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-317
               
               
               Cow position:chr2:18061575-18061881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:11-317
               
               
               Cow position:chr2:41313947-41313638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 60

               
               
               Conread position:11-318
               
               
               Cow position:chr2:6056021-6055715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):151, 69

               
               
               Conread position:11-318
               
               
               Cow position:chr2:24593920-24593641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-318
               
               
               Cow position:chr2:29612606-29612313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:11-318
               
               
               Cow position:chr2:30817020-30816705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:11-318
               
               
               Cow position:chr2:32048533-32048236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr2:33251036-33251327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):155, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr2:38747712-38747424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:11-318
               
               
               Cow position:chr2:43577744-43578049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr2:66403878-66404180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr2:68842881-68843201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr2:71437325-71437636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr2:84480448-84480772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:11-326
               
               
               Cow position:chr2:46202315-46202008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:11-330
               
               
               Cow position:chr2:31155761-31155453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-332
               
               
               Cow position:chr2:21682-22005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:11-332
               
               
               Cow position:chr2:14854358-14854057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-332
               
               
               Cow position:chr2:44191533-44191218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):191, 71

               
               
               Conread position:11-332
               
               
               Cow position:chr2:53532759-53533073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):88, 66

               
               
               Conread position:11-332
               
               
               Cow position:chr2:59397000-59397325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-333
               
               
               Cow position:chr2:28820417-28820097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:11-337
               
               
               Cow position:chr2:32446288-32446581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-337
               
               
               Cow position:chr2:52171309-52170980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-346
               
               
               Cow position:chr2:42183425-42183091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:11-351
               
               
               Cow position:chr2:6356327-6356672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 71

               
               
               Conread position:11-356
               
               
               Cow position:chr2:47090815-47090474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:11-368
               
               
               Cow position:chr2:14749647-14749295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-380
               
               
               Cow position:chr2:59905989-59906344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 65

               
               
               Conread position:11-415
               
               
               Cow position:chr2:13369707-13369319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-415
               
               
               Cow position:chr2:15674594-15674205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 12

               
               
               Conread position:11-415
               
               
               Cow position:chr2:27337726-27338123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-415
               
               
               Cow position:chr2:32264339-32264744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:11-415
               
               
               Cow position:chr2:41147921-41147535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):80, 67

               
               
               Conread position:11-415
               
               
               Cow position:chr2:76562159-76561770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):231, 82

               
               
               Conread position:12-307
               
               
               Cow position:chr2:4273214-4273506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:12-326
               
               
               Cow position:chr2:23493587-23493274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:12-360
               
               
               Cow position:chr2:40427743-40428097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:12-415
               
               
               Cow position:chr2:31500050-31499660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:13-324
               
               
               Cow position:chr2:2078-2375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:13-334
               
               
               Cow position:chr2:46230712-46231035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:14-202
               
               
               Cow position:chr2:39237463-39237286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-205
               
               
               Cow position:chr2:50793796-50793607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-264
               
               
               Cow position:chr2:40484459-40484719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:14-280
               
               
               Cow position:chr2:19294644-19294387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:14-296
               
               
               Cow position:chr2:81348827-81349115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 58

               
               
               Conread position:14-305
               
               
               Cow position:chr2:69579629-69579920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):61, 73

               
               
               Conread position:14-318
               
               
               Cow position:chr2:33659652-33659954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:14-318
               
               
               Cow position:chr2:43835512-43835815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:14-326
               
               
               Cow position:chr2:38965670-38965359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):218, 65

               
               
               Conread position:14-326
               
               
               Cow position:chr2:74353949-74353635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 63

               
               
               Conread position:14-326
               
               
               Cow position:chr2:77241915-77241596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:14-331
               
               
               Cow position:chr2:50278074-50277757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):125, 44

               
               
               Conread position:14-332
               
               
               Cow position:chr2:50766522-50766222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:14-332
               
               
               Cow position:chr2:69238329-69238007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:14-332
               
               
               Cow position:chr2:76313818-76314121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:14-340
               
               
               Cow position:chr2:23270883-23271200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):144, 57

               
               
               Conread position:14-410
               
               
               Cow position:chr2:66217493-66217876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):210, 65

               
               
               Conread position:15-318
               
               
               Cow position:chr2:46344740-46344436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:15-413
               
               
               Cow position:chr2:24271277-24270885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:16-200
               
               
               Cow position:chr2:42293301-42293121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:16-303
               
               
               Cow position:chr2:793695-793410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-318
               
               
               Cow position:chr2:39855840-39855537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:16-324
               
               
               Cow position:chr2:51799274-51799579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:16-332
               
               
               Cow position:chr2:26500885-26501206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:16-368
               
               
               Cow position:chr2:85926106-85925755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:17-415
               
               
               Cow position:chr2:305803-306187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:18-295
               
               
               Cow position:chr2:23847780-23848049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:19-240
               
               
               Cow position:chr2:46175215-46175425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:19-290
               
               
               Cow position:chr2:55960567-55960832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):104, 6

               
               
               Conread position:19-311
               
               
               Cow position:chr2:46194840-46194550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:19-318
               
               
               Cow position:chr2:48748681-48748976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:20-208
               
               
               Cow position:chr2:81894297-81894490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:20-236
               
               
               Cow position:chr2:83410548-83410344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:20-237
               
               
               Cow position:chr2:19594766-19594549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 78

               
               
               Conread position:20-256
               
               
               Cow position:chr2:76122417-76122654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:20-278
               
               
               Cow position:chr2:6281977-6282227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-287
               
               
               Cow position:chr2:15063225-15063488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):161, 68

               
               
               Conread position:20-291
               
               
               Cow position:chr2:15597431-15597695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-315
               
               
               Cow position:chr2:49467673-49467370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:20-317
               
               
               Cow position:chr2:38628953-38628657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:20-318
               
               
               Cow position:chr2:25283855-25283558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:20-318
               
               
               Cow position:chr2:25285599-25285302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:20-326
               
               
               Cow position:chr2:85090988-85091299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:20-415
               
               
               Cow position:chr2:52484924-52485329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:21-307
               
               
               Cow position:chr2:66480143-66480419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:21-316
               
               
               Cow position:chr2:77467405-77467707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-317
               
               
               Cow position:chr2:40402984-40403272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:21-318
               
               
               Cow position:chr2:19287039-19287329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):211, 58

               
               
               Conread position:21-331
               
               
               Cow position:chr2:1210720-1211033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:21-331
               
               
               Cow position:chr2:45784782-45784471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 60

               
               
               Conread position:21-415
               
               
               Cow position:chr2:54790324-54789933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:22-318
               
               
               Cow position:chr2:32115122-32114813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:22-318
               
               
               Cow position:chr2:54883511-54883231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:23-231
               
               
               Cow position:chr2:46119724-46119922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 12

               
               
               Conread position:23-236
               
               
               Cow position:chr2:38785560-38785769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:23-316
               
               
               Cow position:chr2:14806300-14806584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:23-318
               
               
               Cow position:chr2:43994976-43994682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:23-318
               
               
               Cow position:chr2:68190598-68190888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:23-329
               
               
               Cow position:chr2:22125238-22125560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:23-331
               
               
               Cow position:chr2:36055758-36056062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):226, 53

               
               
               Conread position:24-318
               
               
               Cow position:chr2:29041923-29041629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:24-318
               
               
               Cow position:chr2:41452273-41451978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:24-336
               
               
               Cow position:chr2:30640231-30639921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:24-413
               
               
               Cow position:chr2:69223180-69223568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):115, 76

               
               
               Conread position:24-415
               
               
               Cow position:chr2:45470047-45469657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:25-316
               
               
               Cow position:chr2:42226227-42226516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 75

               
               
               Conread position:26-240
               
               
               Cow position:chr2:58057102-58056899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:26-264
               
               
               Cow position:chr2:4655057-4655298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:26-276
               
               
               Cow position:chr2:44051349-44051093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-318
               
               
               Cow position:chr2:7194249-7193950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:26-318
               
               
               Cow position:chr2:21416338-21416061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:26-318
               
               
               Cow position:chr2:47645087-47644801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-331
               
               
               Cow position:chr2:29882701-29883002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:27-185
               
               
               Cow position:chr2:4016808-4016954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:27-203
               
               
               Cow position:chr2:58563795-58563963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 66

               
               
               Conread position:27-332
               
               
               Cow position:chr2:6313816-6314120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 87

               
               
               Conread position:28-351
               
               
               Cow position:chr2:64973109-64972796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:29-210
               
               
               Cow position:chr2:45367335-45367154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:29-310
               
               
               Cow position:chr2:80903874-80904169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 265

               
               
               Conread position:29-318
               
               
               Cow position:chr2:988728-988439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):110, 58

               
               
               Conread position:29-332
               
               
               Cow position:chr2:276718-276433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):218, 71

               
               
               Conread position:29-332
               
               
               Cow position:chr2:43773539-43773841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:29-333
               
               
               Cow position:chr2:55387578-55387282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:29-334
               
               
               Cow position:chr2:37113154-37113466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:29-354
               
               
               Cow position:chr2:29802094-29802396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 59

               
               
               Conread position:29-415
               
               
               Cow position:chr2:7966135-7965778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):110, 61

               
               
               Conread position:29-415
               
               
               Cow position:chr2:15815622-15815249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:29-415
               
               
               Cow position:chr2:81927889-81927512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 65

               
               
               Conread position:30-188
               
               
               Cow position:chr2:40597612-40597462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:30-194
               
               
               Cow position:chr2:39228850-39228683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:30-205
               
               
               Cow position:chr2:39598000-39597828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-229
               
               
               Cow position:chr2:73544854-73545053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:30-293
               
               
               Cow position:chr2:47808761-47808502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):156, 8

               
               
               Conread position:30-311
               
               
               Cow position:chr2:14555714-14555996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:30-318
               
               
               Cow position:chr2:46741518-46741224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-325
               
               
               Cow position:chr2:40691520-40691229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):109, 46

               
               
               Conread position:30-326
               
               
               Cow position:chr2:70908291-70908575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:30-359
               
               
               Cow position:chr2:85496297-85496606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:30-415
               
               
               Cow position:chr2:47361488-47361861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:31-204
               
               
               Cow position:chr2:46406359-46406184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:31-296
               
               
               Cow position:chr2:55278565-55278830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:31-318
               
               
               Cow position:chr2:36866743-36867017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:31-348
               
               
               Cow position:chr2:62978640-62978947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:32-184
               
               
               Cow position:chr2:387744-387888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:32-234
               
               
               Cow position:chr2:11412631-11412425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:32-317
               
               
               Cow position:chr2:40882104-40881835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:32-398
               
               
               Cow position:chr2:27178685-27178326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:33-318
               
               
               Cow position:chr2:80839097-80839382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:34-222
               
               
               Cow position:chr2:76764668-76764856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:34-315
               
               
               Cow position:chr2:76182781-76183052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:34-328
               
               
               Cow position:chr2:71624359-71624638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):205, 54

               
               
               Conread position:34-336
               
               
               Cow position:chr2:41185499-41185201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:35-307
               
               
               Cow position:chr2:16428367-16428641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:35-318
               
               
               Cow position:chr2:7720880-7721156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:35-338
               
               
               Cow position:chr2:63865296-63865604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:35-412
               
               
               Cow position:chr2:38376935-38376549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):121, 79

               
               
               Conread position:36-415
               
               
               Cow position:chr2:49344738-49344374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):103, 54

               
               
               Conread position:38-296
               
               
               Cow position:chr2:6697469-6697723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:38-316
               
               
               Cow position:chr2:44482622-44482896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:38-330
               
               
               Cow position:chr2:74209303-74209587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:39-318
               
               
               Cow position:chr2:45439464-45439203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:40-235
               
               
               Cow position:chr2:46111348-46111542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:40-290
               
               
               Cow position:chr2:39368849-39368590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):103, 57

               
               
               Conread position:40-291
               
               
               Cow position:chr2:36007562-36007807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):97, 39

               
               
               Conread position:40-317
               
               
               Cow position:chr2:55877411-55877149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:40-318
               
               
               Cow position:chr2:21284957-21284685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):99, 42

               
               
               Conread position:40-356
               
               
               Cow position:chr2:25928477-25928163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:40-405
               
               
               Cow position:chr2:39052008-39051652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:41-318
               
               
               Cow position:chr2:73466502-73466766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):140, 14

               
               
               Conread position:42-315
               
               
               Cow position:chr2:44550819-44551083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:42-317
               
               
               Cow position:chr2:58247853-58248116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:43-263
               
               
               Cow position:chr2:29907172-29907388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:43-296
               
               
               Cow position:chr2:68716647-68716899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:43-318
               
               
               Cow position:chr2:24469636-24469909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 54

               
               
               Conread position:43-331
               
               
               Cow position:chr2:1658518-1658234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:44-260
               
               
               Cow position:chr2:46353466-46353688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:44-278
               
               
               Cow position:chr2:1435363-1435127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:45-415
               
               
               Cow position:chr2:56102435-56102807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 276

               
               
               Conread position:46-333
               
               
               Cow position:chr2:21355833-21356120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:47-240
               
               
               Cow position:chr2:41422666-41422477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:47-293
               
               
               Cow position:chr2:69770522-69770276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-307
               
               
               Cow position:chr2:20940457-20940198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-316
               
               
               Cow position:chr2:45311102-45311377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:47-318
               
               
               Cow position:chr2:46184248-46184526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:47-318
               
               
               Cow position:chr2:80797682-80797423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:47-415
               
               
               Cow position:chr2:71163688-71164062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:49-332
               
               
               Cow position:chr2:13467714-13467433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:49-332
               
               
               Cow position:chr2:39384859-39385129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:50-332
               
               
               Cow position:chr2:80324840-80325114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 8

               
               
               Conread position:52-222
               
               
               Cow position:chr2:39058876-39058701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:52-318
               
               
               Cow position:chr2:21407935-21407668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:52-405
               
               
               Cow position:chr2:8295834-8295503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:53-318
               
               
               Cow position:chr2:85930471-85930205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):177, 19

               
               
               Conread position:54-340
               
               
               Cow position:chr2:66614898-66615194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:55-249
               
               
               Cow position:chr2:60903153-60902967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:55-263
               
               
               Cow position:chr2:37424087-37424304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:55-307
               
               
               Cow position:chr2:50400436-50400178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-411
               
               
               Cow position:chr2:27076719-27076372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-415
               
               
               Cow position:chr2:23014469-23014830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:56-296
               
               
               Cow position:chr2:46020913-46020675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:56-415
               
               
               Cow position:chr2:55480230-55480592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:57-283
               
               
               Cow position:chr2:21078589-21078371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:57-303
               
               
               Cow position:chr2:82937294-82937538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:58-293
               
               
               Cow position:chr2:47119645-47119397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:62-293
               
               
               Cow position:chr2:78116342-78116570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:62-310
               
               
               Cow position:chr2:24393687-24393933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):168, 31

               
               
               Conread position:62-316
               
               
               Cow position:chr2:1203687-1203430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:62-331
               
               
               Cow position:chr2:65603919-65604192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:62-367
               
               
               Cow position:chr2:73069729-73069416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:62-415
               
               
               Cow position:chr2:818594-818236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 242

               
               
               Conread position:63-275
               
               
               Cow position:chr2:58686944-58686734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:63-335
               
               
               Cow position:chr2:45619388-45619664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 89

               
               
               Conread position:67-309
               
               
               Cow position:chr2:50777768-50777532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):172, 25

               
               
               Conread position:67-311
               
               
               Cow position:chr2:25964489-25964730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:69-368
               
               
               Cow position:chr2:22969139-22968838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:71-277
               
               
               Cow position:chr2:82647824-82648031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:74-326
               
               
               Cow position:chr2:11900428-11900170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:74-415
               
               
               Cow position:chr2:27600547-27600886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:74-415
               
               
               Cow position:chr2:46362823-46362482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:79-328
               
               
               Cow position:chr2:13725913-13726157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:80-413
               
               
               Cow position:chr2:42599922-42599586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:81-332
               
               
               Cow position:chr2:21171371-21171132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):158, 26

               
               
               Conread position:81-350
               
               
               Cow position:chr2:41525732-41526001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:82-279
               
               
               Cow position:chr2:19154296-19154095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:82-316
               
               
               Cow position:chr2:60471176-60470933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:82-346
               
               
               Cow position:chr2:29546008-29546279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:83-290
               
               
               Cow position:chr2:6160350-6160551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):159, 14

               
               
               Conread position:83-317
               
               
               Cow position:chr2:73094802-73095035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:83-318
               
               
               Cow position:chr2:42938310-42938552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:83-334
               
               
               Cow position:chr2:71495379-71495120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:83-356
               
               
               Cow position:chr2:50606535-50606259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:83-405
               
               
               Cow position:chr2:7533781-7534110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:84-282
               
               
               Cow position:chr2:20933776-20933580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-307
               
               
               Cow position:chr2:64212572-64212803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:84-318
               
               
               Cow position:chr2:15568197-15568437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:84-318
               
               
               Cow position:chr2:36630958-36630717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:84-318
               
               
               Cow position:chr2:55526775-55527014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr2:16422539-16422288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-332
               
               
               Cow position:chr2:41185038-41184800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:85-332
               
               
               Cow position:chr2:52344741-52344496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:85-332
               
               
               Cow position:chr2:77378232-77377970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:85-360
               
               
               Cow position:chr2:46245449-46245733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:86-332
               
               
               Cow position:chr2:46357819-46357579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:87-332
               
               
               Cow position:chr2:44986340-44986592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:87-332
               
               
               Cow position:chr2:48069413-48069668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):24, 207

               
               
               Conread position:87-355
               
               
               Cow position:chr2:32408508-32408764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:87-368
               
               
               Cow position:chr2:59992256-59992541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:88-307
               
               
               Cow position:chr2:69581524-69581753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:88-317
               
               
               Cow position:chr2:52385936-52386172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:88-318
               
               
               Cow position:chr2:16594591-16594355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:88-318
               
               
               Cow position:chr2:16632920-16632684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:88-326
               
               
               Cow position:chr2:42394403-42394169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:90-361
               
               
               Cow position:chr2:2689148-2688878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:91-318
               
               
               Cow position:chr2:1352133-1352363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:91-318
               
               
               Cow position:chr2:8505798-8505565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:92-233
               
               
               Cow position:chr2:45537455-45537598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:92-310
               
               
               Cow position:chr2:15653333-15653554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:92-316
               
               
               Cow position:chr2:9591912-9591679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:92-318
               
               
               Cow position:chr2:45575019-45575248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:92-328
               
               
               Cow position:chr2:27613041-27613288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:92-330
               
               
               Cow position:chr2:45554294-45554056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 195

               
               
               Conread position:92-331
               
               
               Cow position:chr2:13001783-13001546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:92-332
               
               
               Cow position:chr2:13544004-13543762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 166

               
               
               Conread position:92-335
               
               
               Cow position:chr2:74031005-74031257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:92-340
               
               
               Cow position:chr2:103542-103796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 212

               
               
               Conread position:93-262
               
               
               Cow position:chr2:59915196-59915026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:93-305
               
               
               Cow position:chr2:60462843-60463056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:93-305
               
               
               Cow position:chr2:60468222-60468435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:93-314
               
               
               Cow position:chr2:32498653-32498875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:93-318
               
               
               Cow position:chr2:43951966-43951747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:93-412
               
               
               Cow position:chr2:469625-469308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):204, 14

               
               
               Conread position:93-415
               
               
               Cow position:chr2:46312429-46312110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:93-432
               
               
               Cow position:chr2:47066599-47066938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:95-315
               
               
               Cow position:chr2:36998135-36997907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:95-332
               
               
               Cow position:chr2:76969203-76969444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):135, 11

               
               
               Conread position:95-415
               
               
               Cow position:chr2:47008364-47008694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 250

               
               
               Conread position:96-245
               
               
               Cow position:chr2:62674257-62674408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-308
               
               
               Cow position:chr2:46294062-46294279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:96-309
               
               
               Cow position:chr2:74249248-74249470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-318
               
               
               Cow position:chr2:46170899-46171126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:97-333
               
               
               Cow position:chr2:13342008-13342247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:97-343
               
               
               Cow position:chr2:85246354-85246609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:97-364
               
               
               Cow position:chr2:40492347-40492071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:97-415
               
               
               Cow position:chr2:76822275-76822595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 207

               
               
               Conread position:98-300
               
               
               Cow position:chr2:15329364-15329168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:98-317
               
               
               Cow position:chr2:15571557-15571779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:99-325
               
               
               Cow position:chr2:32489435-32489658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:100-323
               
               
               Cow position:chr2:333122-333333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:100-332
               
               
               Cow position:chr2:841133-840893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:100-344
               
               
               Cow position:chr2:20980368-20980122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:101-311
               
               
               Cow position:chr2:42872241-42872022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-317
               
               
               Cow position:chr2:48617952-48617727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-415
               
               
               Cow position:chr2:17341547-17341233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:102-307
               
               
               Cow position:chr2:12185989-12185787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:104-235
               
               
               Cow position:chr2:70306126-70305997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:104-261
               
               
               Cow position:chr2:17493349-17493518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:104-293
               
               
               Cow position:chr2:1134422-1134621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-334
               
               
               Cow position:chr2:22035614-22035383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 196

               
               
               Conread position:104-415
               
               
               Cow position:chr2:5297714-5297398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 243

               
               
               Conread position:105-314
               
               
               Cow position:chr2:14396276-14396487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:105-318
               
               
               Cow position:chr2:24709376-24709595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:105-318
               
               
               Cow position:chr2:50580340-50580117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 204

               
               
               Conread position:106-291
               
               
               Cow position:chr2:28318889-28319077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:106-304
               
               
               Cow position:chr2:11599401-11599202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:106-332
               
               
               Cow position:chr2:47138806-47138571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-358
               
               
               Cow position:chr2:42897164-42897418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:106-415
               
               
               Cow position:chr2:28637322-28637623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:107-318
               
               
               Cow position:chr2:26555623-26555839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:107-331
               
               
               Cow position:chr2:47877938-47877714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:107-331
               
               
               Cow position:chr2:84997286-84997050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:108-296
               
               
               Cow position:chr2:68660753-68660561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:108-318
               
               
               Cow position:chr2:41949992-41949771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:108-395
               
               
               Cow position:chr2:24669130-24668829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:108-415
               
               
               Cow position:chr2:70746761-70746437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:109-240
               
               
               Cow position:chr2:47152571-47152705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:109-318
               
               
               Cow position:chr2:31783899-31783690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:110-318
               
               
               Cow position:chr2:32406642-32406434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:111-269
               
               
               Cow position:chr2:41443365-41443203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:111-332
               
               
               Cow position:chr2:23712845-23712625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:112-316
               
               
               Cow position:chr2:73282597-73282808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):27, 177

               
               
               Conread position:112-317
               
               
               Cow position:chr2:485577-485368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:113-358
               
               
               Cow position:chr2:52777236-52776988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:113-415
               
               
               Cow position:chr2:79404060-79403756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 179

               
               
               Conread position:113-432
               
               
               Cow position:chr2:36318419-36318736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:114-307
               
               
               Cow position:chr2:39941447-39941244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:114-318
               
               
               Cow position:chr2:16693112-16692904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:115-335
               
               
               Cow position:chr2:73985060-73985290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:116-293
               
               
               Cow position:chr2:56002969-56002787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:116-311
               
               
               Cow position:chr2:46734412-46734212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:116-323
               
               
               Cow position:chr2:14884239-14884028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):23, 187

               
               
               Conread position:116-353
               
               
               Cow position:chr2:6063060-6063303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 221

               
               
               Conread position:117-318
               
               
               Cow position:chr2:68084468-68084262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:118-332
               
               
               Cow position:chr2:85740070-85739861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:121-279
               
               
               Cow position:chr2:26157761-26157926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:121-296
               
               
               Cow position:chr2:24722496-24722672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:121-306
               
               
               Cow position:chr2:54253301-54253113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:124-317
               
               
               Cow position:chr2:14349733-14349544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:124-331
               
               
               Cow position:chr2:37072765-37072547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:124-332
               
               
               Cow position:chr2:18636845-18636627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:124-414
               
               
               Cow position:chr2:28285582-28285870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 179

               
               
               Conread position:127-318
               
               
               Cow position:chr2:4922180-4922373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:127-318
               
               
               Cow position:chr2:37121126-37120931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:127-348
               
               
               Cow position:chr2:70656900-70656675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 188

               
               
               Conread position:128-318
               
               
               Cow position:chr2:37347743-37347548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:128-332
               
               
               Cow position:chr2:43609162-43609358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:128-342
               
               
               Cow position:chr2:39068249-39068033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):11, 173

               
               
               Conread position:129-318
               
               
               Cow position:chr2:15216561-15216357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:130-332
               
               
               Cow position:chr2:53575044-53574842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):59, 179

               
               
               Conread position:131-318
               
               
               Cow position:chr2:11840373-11840180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:131-350
               
               
               Cow position:chr2:65050971-65050752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:132-274
               
               
               Cow position:chr2:31529450-31529304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:137-332
               
               
               Cow position:chr2:44032607-44032796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:138-344
               
               
               Cow position:chr2:85281183-85281394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 63

               
               
               Conread position:138-368
               
               
               Cow position:chr2:36044417-36044657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:138-415
               
               
               Cow position:chr2:44065523-44065251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):45, 164

               
               
               Conread position:139-318
               
               
               Cow position:chr2:20855896-20856075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:139-318
               
               
               Cow position:chr2:60956304-60956123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:139-354
               
               
               Cow position:chr2:21698931-21698707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:144-339
               
               
               Cow position:chr2:15694158-15693957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 130

               
               
               Conread position:144-350
               
               
               Cow position:chr2:31264562-31264770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:149-345
               
               
               Cow position:chr2:80177840-80178044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:150-325
               
               
               Cow position:chr2:26318550-26318372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:150-332
               
               
               Cow position:chr2:22254242-22254428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:152-328
               
               
               Cow position:chr2:23120844-23121019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:156-332
               
               
               Cow position:chr2:16412284-16412112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:164-415
               
               
               Cow position:chr2:30910333-30910070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 142

               
               
               Conread position:170-335
               
               
               Cow position:chr2:66563372-66563535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:177-353
               
               
               Cow position:chr2:53501369-53501544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:183-346
               
               
               Cow position:chr2:23128892-23129059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:183-359
               
               
               Cow position:chr2:6720747-6720561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:183-414
               
               
               Cow position:chr2:29291654-29291882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:185-318
               
               
               Cow position:chr2:56771725-56771591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:185-348
               
               
               Cow position:chr2:29734393-29734220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:239-368
               
               
               Cow position:chr2:6738441-6738573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1-169
               
               
               Cow position:chr20:10772312-10772147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:1-202
               
               
               Cow position:chr20:15822656-15822462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:1-219
               
               
               Cow position:chr20:19616599-19616379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-227
               
               
               Cow position:chr20:11188700-11188920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):138, 29

               
               
               Conread position:1-235
               
               
               Cow position:chr20:36633918-36633694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:1-245
               
               
               Cow position:chr20:5814673-5814442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:1-264
               
               
               Cow position:chr20:8547172-8546917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:1-318
               
               
               Cow position:chr20:11741199-11741513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):5, 50

               
               
               Conread position:1-332
               
               
               Cow position:chr20:9014240-9014572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:1-391
               
               
               Cow position:chr20:23846558-23846960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:1-415
               
               
               Cow position:chr20:4945147-4945544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:1-418
               
               
               Cow position:chr20:6240415-6240831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 87

               
               
               Conread position:2-311
               
               
               Cow position:chr20:15565723-15566034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):137, 82

               
               
               Conread position:2-332
               
               
               Cow position:chr20:10208913-10208580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:3-230
               
               
               Cow position:chr20:23235134-23234917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-304
               
               
               Cow position:chr20:25293699-25293398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 25

               
               
               Conread position:3-415
               
               
               Cow position:chr20:3599297-3599691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 27

               
               
               Conread position:6-245
               
               
               Cow position:chr20:21761875-21761643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:7-208
               
               
               Cow position:chr20:33067261-33067469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:7-255
               
               
               Cow position:chr20:4334431-4334667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-296
               
               
               Cow position:chr20:36207913-36207614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:7-318
               
               
               Cow position:chr20:1139669-1139983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:7-318
               
               
               Cow position:chr20:28296393-28296080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:7-318
               
               
               Cow position:chr20:38578665-38578964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):232, 41

               
               
               Conread position:7-325
               
               
               Cow position:chr20:6890813-6890488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-326
               
               
               Cow position:chr20:15548797-15549115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:7-329
               
               
               Cow position:chr20:19751406-19751088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-331
               
               
               Cow position:chr20:28982799-28982475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 9

               
               
               Conread position:7-334
               
               
               Cow position:chr20:14759566-14759890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-405
               
               
               Cow position:chr20:24069905-24069526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-415
               
               
               Cow position:chr20:31927363-31927757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):132, 53

               
               
               Conread position:7-415
               
               
               Cow position:chr20:39398580-39398181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):134, 72

               
               
               Conread position:8-215
               
               
               Cow position:chr20:34901670-34901466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):139, 85

               
               
               Conread position:8-234
               
               
               Cow position:chr20:30992240-30992017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):129, 66

               
               
               Conread position:8-296
               
               
               Cow position:chr20:28067325-28067614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:8-307
               
               
               Cow position:chr20:35958746-35958446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 83

               
               
               Conread position:8-326
               
               
               Cow position:chr20:19363264-19363580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):211, 71

               
               
               Conread position:8-368
               
               
               Cow position:chr20:4206070-4205700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 86

               
               
               Conread position:9-143
               
               
               Cow position:chr20:7709684-7709816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-152
               
               
               Cow position:chr20:21428259-21428120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:9-179
               
               
               Cow position:chr20:6248504-6248662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr20:23506373-23506536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:9-180
               
               
               Cow position:chr20:11008267-11008103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-180
               
               
               Cow position:chr20:16941191-16941357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):149, 35

               
               
               Conread position:9-187
               
               
               Cow position:chr20:11135664-11135831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-201
               
               
               Cow position:chr20:5078724-5078532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):134, 78

               
               
               Conread position:9-202
               
               
               Cow position:chr20:34085165-34084976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:9-204
               
               
               Cow position:chr20:13983453-13983271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-209
               
               
               Cow position:chr20:23103320-23103123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:9-210
               
               
               Cow position:chr20:28804667-28804465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:9-210
               
               
               Cow position:chr20:29404078-29404274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-213
               
               
               Cow position:chr20:28594382-28594182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-227
               
               
               Cow position:chr20:33438883-33439087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-227
               
               
               Cow position:chr20:36040571-36040356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 87

               
               
               Conread position:9-231
               
               
               Cow position:chr20:15568852-15569065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-231
               
               
               Cow position:chr20:25162028-25162247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:9-235
               
               
               Cow position:chr20:34221576-34221357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:9-235
               
               
               Cow position:chr20:40450119-40449887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:9-236
               
               
               Cow position:chr20:31289607-31289374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-237
               
               
               Cow position:chr20:4332227-4332013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:9-240
               
               
               Cow position:chr20:28955604-28955827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:9-241
               
               
               Cow position:chr20:8098383-8098153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:9-245
               
               
               Cow position:chr20:14433324-14433561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:9-245
               
               
               Cow position:chr20:22978424-22978185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:9-250
               
               
               Cow position:chr20:22484956-22484722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-251
               
               
               Cow position:chr20:9267007-9267244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):204, 77

               
               
               Conread position:9-264
               
               
               Cow position:chr20:32988734-32988988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:9-276
               
               
               Cow position:chr20:7211137-7210870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-289
               
               
               Cow position:chr20:19237172-19236897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-291
               
               
               Cow position:chr20:23792701-23792419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-293
               
               
               Cow position:chr20:3606864-3607139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):211, 16

               
               
               Conread position:9-293
               
               
               Cow position:chr20:34108202-34107931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-296
               
               
               Cow position:chr20:6603138-6602853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:9-304
               
               
               Cow position:chr20:34097856-34098154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:9-307
               
               
               Cow position:chr20:24000700-24000977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-309
               
               
               Cow position:chr20:29805561-29805862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-311
               
               
               Cow position:chr20:33178420-33178729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-315
               
               
               Cow position:chr20:39417806-39418101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:9-317
               
               
               Cow position:chr20:25009535-25009852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:9-317
               
               
               Cow position:chr20:39728549-39728240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr20:6054412-6054722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:9-318
               
               
               Cow position:chr20:6096398-6096695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr20:10200443-10200131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr20:10884260-10884576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr20:19328485-19328190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr20:20984089-20983797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr20:21372405-21372105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr20:26880815-26881124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:9-318
               
               
               Cow position:chr20:28605306-28604996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:9-318
               
               
               Cow position:chr20:34001292-34001606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-320
               
               
               Cow position:chr20:20967418-20967130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:9-324
               
               
               Cow position:chr20:25686251-25686567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):219, 53

               
               
               Conread position:9-326
               
               
               Cow position:chr20:18392174-18392459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-326
               
               
               Cow position:chr20:22959250-22959559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:9-326
               
               
               Cow position:chr20:40257067-40256752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-327
               
               
               Cow position:chr20:35365143-35364833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:9-327
               
               
               Cow position:chr20:38768366-38768672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-328
               
               
               Cow position:chr20:9433684-9433382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-330
               
               
               Cow position:chr20:21714858-21714529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:9-330
               
               
               Cow position:chr20:39019793-39019474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-330
               
               
               Cow position:chr20:39415847-39415524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 67

               
               
               Conread position:9-331
               
               
               Cow position:chr20:6424064-6423741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr20:7110024-7110340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr20:8429844-8429521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 65

               
               
               Conread position:9-332
               
               
               Cow position:chr20:11340707-11341029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:9-332
               
               
               Cow position:chr20:13493839-13493514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:9-332
               
               
               Cow position:chr20:20203315-20202992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr20:33169758-33170098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 162

               
               
               Conread position:9-334
               
               
               Cow position:chr20:40511659-40511983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-335
               
               
               Cow position:chr20:16715489-16715173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:9-339
               
               
               Cow position:chr20:21929002-21928665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-340
               
               
               Cow position:chr20:34777277-34776954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:9-341
               
               
               Cow position:chr20:23505925-23505596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-344
               
               
               Cow position:chr20:18551459-18551127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):172, 20

               
               
               Conread position:9-352
               
               
               Cow position:chr20:14572266-14572600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:9-415
               
               
               Cow position:chr20:580823-581227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):212, 82

               
               
               Conread position:9-415
               
               
               Cow position:chr20:5998574-5998973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:9-415
               
               
               Cow position:chr20:6257962-6258362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:9-415
               
               
               Cow position:chr20:9412585-9412197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr20:17251814-17251412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:9-415
               
               
               Cow position:chr20:29845148-29844746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr20:33144456-33144852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-415
               
               
               Cow position:chr20:33363615-33363217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):230, 82

               
               
               Conread position:9-415
               
               
               Cow position:chr20:35146118-35145708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr20:36779632-36780029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-415
               
               
               Cow position:chr20:40423006-40423389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:10-209
               
               
               Cow position:chr20:21698490-21698290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:10-276
               
               
               Cow position:chr20:7438755-7439017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:10-278
               
               
               Cow position:chr20:31081134-31080874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:10-307
               
               
               Cow position:chr20:7659117-7659412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 89

               
               
               Conread position:10-326
               
               
               Cow position:chr20:33532399-33532093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:11-221
               
               
               Cow position:chr20:39266863-39267068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:11-245
               
               
               Cow position:chr20:36010891-36010661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-291
               
               
               Cow position:chr20:41028584-41028300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:11-307
               
               
               Cow position:chr20:20359687-20359974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:11-309
               
               
               Cow position:chr20:15073741-15074033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:11-311
               
               
               Cow position:chr20:39325486-39325182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:11-315
               
               
               Cow position:chr20:23870724-23871022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-317
               
               
               Cow position:chr20:14806982-14806677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-317
               
               
               Cow position:chr20:35009642-35009949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr20:6903409-6903119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:11-318
               
               
               Cow position:chr20:11482039-11482349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-318
               
               
               Cow position:chr20:14879884-14879576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-318
               
               
               Cow position:chr20:34251577-34251888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:11-328
               
               
               Cow position:chr20:17670279-17669962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):152, 68

               
               
               Conread position:11-332
               
               
               Cow position:chr20:26077177-26076861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):128, 60

               
               
               Conread position:11-351
               
               
               Cow position:chr20:42458761-42459094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-363
               
               
               Cow position:chr20:20471880-20471534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr20:12995910-12996308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:12-234
               
               
               Cow position:chr20:30648107-30648329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 159

               
               
               Conread position:12-317
               
               
               Cow position:chr20:13967161-13967467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:13-261
               
               
               Cow position:chr20:1576187-1575946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:13-264
               
               
               Cow position:chr20:13652274-13652513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:14-236
               
               
               Cow position:chr20:14540436-14540228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):168, 77

               
               
               Conread position:14-240
               
               
               Cow position:chr20:41089704-41089918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:14-264
               
               
               Cow position:chr20:32523556-32523312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:14-269
               
               
               Cow position:chr20:10348843-10348589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:14-293
               
               
               Cow position:chr20:37165802-37165541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):220, 31

               
               
               Conread position:14-328
               
               
               Cow position:chr20:34597005-34597328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-415
               
               
               Cow position:chr20:21345525-21345103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:15-261
               
               
               Cow position:chr20:13025523-13025761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):170, 78

               
               
               Conread position:16-316
               
               
               Cow position:chr20:13821488-13821790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:16-318
               
               
               Cow position:chr20:22235397-22235104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:16-352
               
               
               Cow position:chr20:24868941-24869272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):214, 63

               
               
               Conread position:16-363
               
               
               Cow position:chr20:10838122-10838474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:17-318
               
               
               Cow position:chr20:22704383-22704078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 8

               
               
               Conread position:19-268
               
               
               Cow position:chr20:15312757-15312499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:19-330
               
               
               Cow position:chr20:19238339-19238654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:19-342
               
               
               Cow position:chr20:35897609-35897284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:20-180
               
               
               Cow position:chr20:20056399-20056552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:20-208
               
               
               Cow position:chr20:12430710-12430891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:20-228
               
               
               Cow position:chr20:13795067-13794873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:20-237
               
               
               Cow position:chr20:13658756-13658967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:20-262
               
               
               Cow position:chr20:24727449-24727220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-318
               
               
               Cow position:chr20:32861909-32862202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:20-350
               
               
               Cow position:chr20:13465596-13465276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 43

               
               
               Conread position:20-359
               
               
               Cow position:chr20:14735755-14735426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:20-415
               
               
               Cow position:chr20:6571422-6571033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 153

               
               
               Conread position:21-235
               
               
               Cow position:chr20:282840-283048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 69

               
               
               Conread position:21-296
               
               
               Cow position:chr20:8578334-8578056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:21-297
               
               
               Cow position:chr20:11864048-11864325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-314
               
               
               Cow position:chr20:39518092-39517805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr20:3331200-3331504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-318
               
               
               Cow position:chr20:20202077-20201782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 35

               
               
               Conread position:21-326
               
               
               Cow position:chr20:13269705-13269407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:21-354
               
               
               Cow position:chr20:12420533-12420867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:22-289
               
               
               Cow position:chr20:14980425-14980696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):115, 69

               
               
               Conread position:22-293
               
               
               Cow position:chr20:7550322-7550056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:22-318
               
               
               Cow position:chr20:8702833-8703116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 30

               
               
               Conread position:22-318
               
               
               Cow position:chr20:9473530-9473824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:23-197
               
               
               Cow position:chr20:5644874-5644702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:23-201
               
               
               Cow position:chr20:23541074-23541246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:23-306
               
               
               Cow position:chr20:8556186-8556472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:23-318
               
               
               Cow position:chr20:30778252-30777966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:23-326
               
               
               Cow position:chr20:35906972-35907265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:24-326
               
               
               Cow position:chr20:7756540-7756847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 77

               
               
               Conread position:24-326
               
               
               Cow position:chr20:19146959-19146652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:24-415
               
               
               Cow position:chr20:30817618-30817237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:26-240
               
               
               Cow position:chr20:8308100-8307889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-315
               
               
               Cow position:chr20:38551452-38551167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:26-318
               
               
               Cow position:chr20:35797692-35797396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 67

               
               
               Conread position:26-334
               
               
               Cow position:chr20:42469841-42469540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):163, 62

               
               
               Conread position:26-335
               
               
               Cow position:chr20:11550449-11550139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:27-263
               
               
               Cow position:chr20:5636558-5636325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:29-231
               
               
               Cow position:chr20:24834173-24833975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-318
               
               
               Cow position:chr20:9537216-9536924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-422
               
               
               Cow position:chr20:21019644-21019259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 43

               
               
               Conread position:30-256
               
               
               Cow position:chr20:18500283-18500071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:30-311
               
               
               Cow position:chr20:29754865-29754583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:30-355
               
               
               Cow position:chr20:7442056-7442371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-414
               
               
               Cow position:chr20:13876626-13877007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-414
               
               
               Cow position:chr20:23064754-23065135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-415
               
               
               Cow position:chr20:10539399-10539022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:31-277
               
               
               Cow position:chr20:28832045-28831794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-307
               
               
               Cow position:chr20:33435089-33435368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:32-318
               
               
               Cow position:chr20:32577843-32578130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 59

               
               
               Conread position:33-264
               
               
               Cow position:chr20:18837078-18837317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:34-238
               
               
               Cow position:chr20:27003652-27003855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 177

               
               
               Conread position:38-317
               
               
               Cow position:chr20:17904227-17903947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:38-318
               
               
               Cow position:chr20:10033851-10034139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:38-326
               
               
               Cow position:chr20:15760881-15761166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-414
               
               
               Cow position:chr20:18185635-18185281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:41-332
               
               
               Cow position:chr20:20312682-20312961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:42-332
               
               
               Cow position:chr20:3035170-3034870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:43-278
               
               
               Cow position:chr20:3321069-3321308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:43-291
               
               
               Cow position:chr20:31069702-31069452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:43-318
               
               
               Cow position:chr20:24521812-24521541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:43-330
               
               
               Cow position:chr20:19313002-19313289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:43-342
               
               
               Cow position:chr20:40185608-40185907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:44-329
               
               
               Cow position:chr20:41451744-41452027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 5

               
               
               Conread position:44-415
               
               
               Cow position:chr20:18100470-18100120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:47-179
               
               
               Cow position:chr20:396576-396446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:47-264
               
               
               Cow position:chr20:34240597-34240369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:47-282
               
               
               Cow position:chr20:37272774-37272542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr20:6848690-6848412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-318
               
               
               Cow position:chr20:32068792-32069068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:47-415
               
               
               Cow position:chr20:24002375-24002030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:48-318
               
               
               Cow position:chr20:23936346-23936625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:49-415
               
               
               Cow position:chr20:4621283-4621639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 52

               
               
               Conread position:55-293
               
               
               Cow position:chr20:24392030-24391795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-318
               
               
               Cow position:chr20:13956098-13955831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:55-330
               
               
               Cow position:chr20:27843704-27843429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:55-334
               
               
               Cow position:chr20:14831561-14831839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:55-349
               
               
               Cow position:chr20:5269010-5269311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:56-318
               
               
               Cow position:chr20:10178048-10178321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:56-352
               
               
               Cow position:chr20:29632949-29633235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:57-318
               
               
               Cow position:chr20:3781374-3781637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:57-368
               
               
               Cow position:chr20:9988629-9988324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:57-415
               
               
               Cow position:chr20:27340112-27339764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:58-317
               
               
               Cow position:chr20:15593346-15593087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:60-296
               
               
               Cow position:chr20:26469016-26469253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:65-264
               
               
               Cow position:chr20:9701527-9701731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:66-414
               
               
               Cow position:chr20:15147969-15148319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:71-326
               
               
               Cow position:chr20:38818050-38817793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:74-332
               
               
               Cow position:chr20:10469106-10468847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 173

               
               
               Conread position:80-318
               
               
               Cow position:chr20:18399796-18399551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:80-330
               
               
               Cow position:chr20:22445603-22445856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:81-317
               
               
               Cow position:chr20:33177223-33176973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:83-290
               
               
               Cow position:chr20:19410334-19410551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:83-332
               
               
               Cow position:chr20:8910947-8910700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:83-334
               
               
               Cow position:chr20:18618664-18618413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:84-290
               
               
               Cow position:chr20:32084053-32084266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:84-310
               
               
               Cow position:chr20:5826970-5826735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:84-318
               
               
               Cow position:chr20:6501838-6501589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:84-326
               
               
               Cow position:chr20:11542254-11542502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:84-326
               
               
               Cow position:chr20:39675361-39675611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:84-335
               
               
               Cow position:chr20:31746600-31746850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:84-354
               
               
               Cow position:chr20:39405789-39405522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:85-332
               
               
               Cow position:chr20:18320764-18321021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:86-331
               
               
               Cow position:chr20:26996559-26996311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:86-332
               
               
               Cow position:chr20:10235881-10235628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:87-212
               
               
               Cow position:chr20:38935211-38935336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:87-318
               
               
               Cow position:chr20:40303842-40304058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:87-373
               
               
               Cow position:chr20:37200385-37200089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):52, 271

               
               
               Conread position:88-332
               
               
               Cow position:chr20:15582013-15582259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:88-332
               
               
               Cow position:chr20:27977683-27977934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:88-363
               
               
               Cow position:chr20:12041124-12041401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:88-415
               
               
               Cow position:chr20:22920142-22920459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):8, 75

               
               
               Conread position:91-318
               
               
               Cow position:chr20:8020920-8020685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):48, 216

               
               
               Conread position:91-318
               
               
               Cow position:chr20:13752254-13752031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:91-318
               
               
               Cow position:chr20:15576865-15577101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:91-332
               
               
               Cow position:chr20:12441664-12441915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:92-272
               
               
               Cow position:chr20:31077575-31077385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-293
               
               
               Cow position:chr20:34918293-34918094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:92-318
               
               
               Cow position:chr20:23834148-23833916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:92-333
               
               
               Cow position:chr20:13829286-13829042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:92-335
               
               
               Cow position:chr20:7132372-7132121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:92-413
               
               
               Cow position:chr20:21325138-21324817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:96-264
               
               
               Cow position:chr20:20242106-20241944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):143, 15

               
               
               Conread position:96-367
               
               
               Cow position:chr20:382097-382386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:97-332
               
               
               Cow position:chr20:32636552-32636789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:97-415
               
               
               Cow position:chr20:14756051-14756366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):46, 206

               
               
               Conread position:99-318
               
               
               Cow position:chr20:40127321-40127546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:100-412
               
               
               Cow position:chr20:12155104-12155399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:101-371
               
               
               Cow position:chr20:9379422-9379146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 240

               
               
               Conread position:102-296
               
               
               Cow position:chr20:13994824-13994621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:103-332
               
               
               Cow position:chr20:34202659-34202423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:104-291
               
               
               Cow position:chr20:17733765-17733961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-415
               
               
               Cow position:chr20:12334385-12334084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:105-232
               
               
               Cow position:chr20:361310-361441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:105-317
               
               
               Cow position:chr20:11923234-11923449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:105-335
               
               
               Cow position:chr20:7806551-7806789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:105-360
               
               
               Cow position:chr20:22007508-22007252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:106-318
               
               
               Cow position:chr20:7600774-7600987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:106-326
               
               
               Cow position:chr20:17363679-17363908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:107-311
               
               
               Cow position:chr20:15235775-15235561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:109-415
               
               
               Cow position:chr20:5104436-5104733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:113-318
               
               
               Cow position:chr20:14740097-14740307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:115-291
               
               
               Cow position:chr20:35760668-35760488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:117-318
               
               
               Cow position:chr20:16291468-16291261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 26

               
               
               Conread position:117-415
               
               
               Cow position:chr20:11614046-11614342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:119-296
               
               
               Cow position:chr20:14917296-14917114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:123-326
               
               
               Cow position:chr20:35970936-35970723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:127-315
               
               
               Cow position:chr20:20351001-20351196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:128-282
               
               
               Cow position:chr20:41119897-41119741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:128-306
               
               
               Cow position:chr20:11043517-11043695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:130-325
               
               
               Cow position:chr20:9730066-9729884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:130-333
               
               
               Cow position:chr20:41977398-41977197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:133-318
               
               
               Cow position:chr20:23163897-23164080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:139-335
               
               
               Cow position:chr20:32847329-32847125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 192

               
               
               Conread position:146-311
               
               
               Cow position:chr20:5116335-5116507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 159

               
               
               Conread position:149-318
               
               
               Cow position:chr20:5702712-5702535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:150-316
               
               
               Cow position:chr20:4781528-4781354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 171

               
               
               Conread position:150-318
               
               
               Cow position:chr20:24902500-24902682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:150-474
               
               
               Cow position:chr20:40157213-40156890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:159-317
               
               
               Cow position:chr20:13023521-13023687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:161-317
               
               
               Cow position:chr20:19154976-19155137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 143

               
               
               Conread position:161-368
               
               
               Cow position:chr20:37028724-37028511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:161-413
               
               
               Cow position:chr20:3658747-3658991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:170-318
               
               
               Cow position:chr20:22851096-22850952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:170-415
               
               
               Cow position:chr20:14718799-14719039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 132

               
               
               Conread position:172-318
               
               
               Cow position:chr20:4892961-4893107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-352
               
               
               Cow position:chr20:16157416-16157600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:178-357
               
               
               Cow position:chr20:11975175-11975356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:182-305
               
               
               Cow position:chr20:31148017-31147895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:1-219
               
               
               Cow position:chr21:9036429-9036209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-274
               
               
               Cow position:chr21:11360162-11359892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):229, 78

               
               
               Conread position:1-306
               
               
               Cow position:chr21:19363332-19363641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:1-310
               
               
               Cow position:chr21:12087714-12087413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 54

               
               
               Conread position:1-311
               
               
               Cow position:chr21:40786805-40786488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:1-316
               
               
               Cow position:chr21:33997099-33997409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:1-316
               
               
               Cow position:chr21:39664270-39664575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-317
               
               
               Cow position:chr21:36795731-36795414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:1-318
               
               
               Cow position:chr21:14760692-14760391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):5, 50

               
               
               Conread position:1-318
               
               
               Cow position:chr21:27521212-27521514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:1-324
               
               
               Cow position:chr21:44114003-44114324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:1-326
               
               
               Cow position:chr21:28924237-28923930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-328
               
               
               Cow position:chr21:22856346-22856016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:1-330
               
               
               Cow position:chr21:3254279-3253965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:1-332
               
               
               Cow position:chr21:39401718-39401397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:1-335
               
               
               Cow position:chr21:27123993-27124334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:1-339
               
               
               Cow position:chr21:3498621-3498289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:1-415
               
               
               Cow position:chr21:22718656-22719058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:1-415
               
               
               Cow position:chr21:44671870-44671475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):229, 15

               
               
               Conread position:1-415
               
               
               Cow position:chr21:44754652-44755055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):138, 70

               
               
               Conread position:3-317
               
               
               Cow position:chr21:40134281-40133967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 87

               
               
               Conread position:3-332
               
               
               Cow position:chr21:16166516-16166836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:4-318
               
               
               Cow position:chr21:41878594-41878287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 88

               
               
               Conread position:5-209
               
               
               Cow position:chr21:46551981-46552182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 87

               
               
               Conread position:5-412
               
               
               Cow position:chr21:4276480-4276881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):227, 65

               
               
               Conread position:7-187
               
               
               Cow position:chr21:977028-977197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 81

               
               
               Conread position:7-205
               
               
               Cow position:chr21:33413968-33414157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:7-206
               
               
               Cow position:chr21:1511409-1511218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:7-231
               
               
               Cow position:chr21:21633183-21633400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:7-241
               
               
               Cow position:chr21:17009101-17008873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-264
               
               
               Cow position:chr21:20153076-20152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 95

               
               
               Conread position:7-289
               
               
               Cow position:chr21:25800520-25800247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 74

               
               
               Conread position:7-293
               
               
               Cow position:chr21:10114214-10114493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr21:10151925-10151606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 72

               
               
               Conread position:7-318
               
               
               Cow position:chr21:10601255-10601557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):84, 97

               
               
               Conread position:7-318
               
               
               Cow position:chr21:25286637-25286320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):135, 72

               
               
               Conread position:7-318
               
               
               Cow position:chr21:28997782-28998095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-326
               
               
               Cow position:chr21:28626357-28626044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-332
               
               
               Cow position:chr21:33350861-33350539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):132, 71

               
               
               Conread position:7-332
               
               
               Cow position:chr21:42413977-42414305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:7-332
               
               
               Cow position:chr21:43357136-43357462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:7-334
               
               
               Cow position:chr21:34160072-34159753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:7-334
               
               
               Cow position:chr21:41579876-41579546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-339
               
               
               Cow position:chr21:7710282-7709956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 48

               
               
               Conread position:7-342
               
               
               Cow position:chr21:8206892-8206575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-360
               
               
               Cow position:chr21:27614412-27614056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):181, 7

               
               
               Conread position:7-415
               
               
               Cow position:chr21:24698601-24698204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):242, 60

               
               
               Conread position:7-415
               
               
               Cow position:chr21:29069206-29069606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:8-332
               
               
               Cow position:chr21:24607505-24607182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):181, 71

               
               
               Conread position:8-414
               
               
               Cow position:chr21:30606968-30607380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:9-187
               
               
               Cow position:chr21:47363616-47363793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:9-190
               
               
               Cow position:chr21:868806-868982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:9-202
               
               
               Cow position:chr21:7377808-7377998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 76

               
               
               Conread position:9-203
               
               
               Cow position:chr21:40432563-40432379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-204
               
               
               Cow position:chr21:45262692-45262883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 70

               
               
               Conread position:9-206
               
               
               Cow position:chr21:40266239-40266048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:9-209
               
               
               Cow position:chr21:36910049-36909858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-210
               
               
               Cow position:chr21:46141166-46140964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:9-215
               
               
               Cow position:chr21:37014288-37014485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-222
               
               
               Cow position:chr21:22210128-22210333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:9-225
               
               
               Cow position:chr21:6998065-6997846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:9-229
               
               
               Cow position:chr21:22121623-22121426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-230
               
               
               Cow position:chr21:36789913-36789700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:9-230
               
               
               Cow position:chr21:38664757-38664541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:9-231
               
               
               Cow position:chr21:16914896-16914677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-235
               
               
               Cow position:chr21:9940070-9940297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-235
               
               
               Cow position:chr21:20418564-20418787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-238
               
               
               Cow position:chr21:42022393-42022185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-240
               
               
               Cow position:chr21:10673239-10673024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-240
               
               
               Cow position:chr21:18155448-18155677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-245
               
               
               Cow position:chr21:957790-957560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-245
               
               
               Cow position:chr21:2657927-2657707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):207, 81

               
               
               Conread position:9-256
               
               
               Cow position:chr21:47158-46911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 81

               
               
               Conread position:9-257
               
               
               Cow position:chr21:12301393-12301632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-259
               
               
               Cow position:chr21:30835481-30835234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-265
               
               
               Cow position:chr21:12461849-12462107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-266
               
               
               Cow position:chr21:9697962-9698220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:9-273
               
               
               Cow position:chr21:35354649-35354393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 64

               
               
               Conread position:9-276
               
               
               Cow position:chr21:30222463-30222196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:9-279
               
               
               Cow position:chr21:10007521-10007791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:9-279
               
               
               Cow position:chr21:11456691-11456960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-287
               
               
               Cow position:chr21:13840445-13840164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:9-288
               
               
               Cow position:chr21:10633522-10633800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-289
               
               
               Cow position:chr21:28244588-28244315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-293
               
               
               Cow position:chr21:41198281-41198575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):69, 75

               
               
               Conread position:9-296
               
               
               Cow position:chr21:21169378-21169662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-296
               
               
               Cow position:chr21:23535827-23535549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 56

               
               
               Conread position:9-296
               
               
               Cow position:chr21:32339622-32339904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-304
               
               
               Cow position:chr21:22193981-22194286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:9-306
               
               
               Cow position:chr21:18790447-18790733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-307
               
               
               Cow position:chr21:643442-643155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):233, 71

               
               
               Conread position:9-309
               
               
               Cow position:chr21:39403407-39403718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:9-311
               
               
               Cow position:chr21:13488645-13488337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:9-311
               
               
               Cow position:chr21:28191150-28190846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:9-311
               
               
               Cow position:chr21:37344983-37345284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:9-314
               
               
               Cow position:chr21:30231576-30231888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):178, 84

               
               
               Conread position:9-315
               
               
               Cow position:chr21:18289781-18289475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-317
               
               
               Cow position:chr21:27863395-27863707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):175, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr21:37299580-37299277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):221, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr21:40589364-40589671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr21:1591672-1591362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr21:3360897-3361203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:9-318
               
               
               Cow position:chr21:3763624-3763926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):138, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr21:5427058-5426757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr21:5567104-5566800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr21:5898284-5898588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr21:6834167-6833863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr21:10264151-10263854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr21:13127981-13128280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):217, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr21:18568521-18568840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):129, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr21:18940462-18940746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr21:20044646-20044960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 72

               
               
               Conread position:9-318
               
               
               Cow position:chr21:23149903-23150208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-318
               
               
               Cow position:chr21:27341477-27341786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr21:31253651-31253346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr21:32559247-32559543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr21:32574848-32574544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr21:38449331-38449641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr21:38900892-38900584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr21:41597929-41597626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr21:41621243-41620930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr21:44251725-44252015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr21:45329832-45330129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr21:45473640-45473947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):166, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr21:45971056-45971347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr21:46849010-46849312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:9-321
               
               
               Cow position:chr21:13365460-13365149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-323
               
               
               Cow position:chr21:641705-641390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-323
               
               
               Cow position:chr21:34565096-34565407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 7

               
               
               Conread position:9-325
               
               
               Cow position:chr21:36763179-36762857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 205

               
               
               Conread position:9-326
               
               
               Cow position:chr21:3585250-3585553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr21:3818327-3818019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-326
               
               
               Cow position:chr21:23321960-23322278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-328
               
               
               Cow position:chr21:18844894-18845214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:9-329
               
               
               Cow position:chr21:4281757-4282068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-329
               
               
               Cow position:chr21:46242122-46242439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-330
               
               
               Cow position:chr21:395985-395675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-330
               
               
               Cow position:chr21:4399921-4399598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-331
               
               
               Cow position:chr21:34390857-34391172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-331
               
               
               Cow position:chr21:34654191-34653882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):125, 46

               
               
               Conread position:9-331
               
               
               Cow position:chr21:42540104-42540422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):211, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr21:9416369-9416039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:9-332
               
               
               Cow position:chr21:17511894-17511573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:9-332
               
               
               Cow position:chr21:19258936-19258623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):180, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr21:20262217-20262537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:9-332
               
               
               Cow position:chr21:42384626-42384302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-333
               
               
               Cow position:chr21:8549799-8549477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-334
               
               
               Cow position:chr21:13584943-13585263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:9-334
               
               
               Cow position:chr21:25383144-25382804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 205

               
               
               Conread position:9-334
               
               
               Cow position:chr21:34739962-34739644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-334
               
               
               Cow position:chr21:47763999-47764317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-335
               
               
               Cow position:chr21:5650021-5649700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:9-335
               
               
               Cow position:chr21:28733795-28734118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-338
               
               
               Cow position:chr21:9990628-9990305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-340
               
               
               Cow position:chr21:33837-33510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:9-340
               
               
               Cow position:chr21:11644848-11645180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-344
               
               
               Cow position:chr21:37706297-37706622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-346
               
               
               Cow position:chr21:10004768-10005103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-346
               
               
               Cow position:chr21:33947135-33947461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:9-347
               
               
               Cow position:chr21:14452352-14452011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-347
               
               
               Cow position:chr21:17184035-17183701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-353
               
               
               Cow position:chr21:6051621-6051282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 76

               
               
               Conread position:9-354
               
               
               Cow position:chr21:10118677-10118328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:9-355
               
               
               Cow position:chr21:15584301-15584629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:9-356
               
               
               Cow position:chr21:12801629-12801971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:9-358
               
               
               Cow position:chr21:29002035-29002391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 69

               
               
               Conread position:9-360
               
               
               Cow position:chr21:24598776-24598428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:9-363
               
               
               Cow position:chr21:45355951-45355602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-368
               
               
               Cow position:chr21:18779858-18780209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:9-408
               
               
               Cow position:chr21:14464699-14464294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:9-413
               
               
               Cow position:chr21:29214042-29214431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-415
               
               
               Cow position:chr21:724767-725168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-415
               
               
               Cow position:chr21:13898305-13897915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:9-415
               
               
               Cow position:chr21:15976751-15976363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-415
               
               
               Cow position:chr21:19196046-19196446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:9-415
               
               
               Cow position:chr21:23587000-23586585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr21:30848823-30849222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 196

               
               
               Conread position:9-415
               
               
               Cow position:chr21:36162841-36163241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-415
               
               
               Cow position:chr21:38121219-38120825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr21:41974260-41974657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-434
               
               
               Cow position:chr21:13489764-13489346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:10-192
               
               
               Cow position:chr21:28919406-28919582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-268
               
               
               Cow position:chr21:10561466-10561717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:10-317
               
               
               Cow position:chr21:10514924-10514619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:10-318
               
               
               Cow position:chr21:24222420-24222727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-326
               
               
               Cow position:chr21:34010279-34010587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):129, 46

               
               
               Conread position:10-332
               
               
               Cow position:chr21:5153738-5153414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:10-332
               
               
               Cow position:chr21:23192392-23192721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:11-217
               
               
               Cow position:chr21:44214242-44214040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:11-235
               
               
               Cow position:chr21:32904038-32904257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-264
               
               
               Cow position:chr21:29978644-29978898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-282
               
               
               Cow position:chr21:45920942-45921212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):124, 80

               
               
               Conread position:11-285
               
               
               Cow position:chr21:20260203-20260477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:11-290
               
               
               Cow position:chr21:36756717-36756453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:11-296
               
               
               Cow position:chr21:27145876-27146159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):179, 82

               
               
               Conread position:11-302
               
               
               Cow position:chr21:26245030-26244754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):270, 77

               
               
               Conread position:11-310
               
               
               Cow position:chr21:5636604-5636902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:11-317
               
               
               Cow position:chr21:33263960-33263660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):203, 92

               
               
               Conread position:11-317
               
               
               Cow position:chr21:47465002-47465309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:11-318
               
               
               Cow position:chr21:13048077-13048386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr21:17193635-17193949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr21:22861118-22860813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr21:23801012-23801310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:11-318
               
               
               Cow position:chr21:35997288-35996983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:11-318
               
               
               Cow position:chr21:36297609-36297290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 71

               
               
               Conread position:11-326
               
               
               Cow position:chr21:23786148-23785833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-326
               
               
               Cow position:chr21:44515380-44515077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-330
               
               
               Cow position:chr21:31662583-31662259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-330
               
               
               Cow position:chr21:40899455-40899133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:11-332
               
               
               Cow position:chr21:20160792-20160481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-333
               
               
               Cow position:chr21:10727393-10727077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-413
               
               
               Cow position:chr21:24888115-24887721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:11-415
               
               
               Cow position:chr21:19766970-19766576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr21:24858431-24858033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):222, 72

               
               
               Conread position:12-179
               
               
               Cow position:chr21:19513980-19513819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 66

               
               
               Conread position:12-318
               
               
               Cow position:chr21:17642869-17643159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):218, 72

               
               
               Conread position:13-292
               
               
               Cow position:chr21:13754900-13754639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:13-326
               
               
               Cow position:chr21:5392421-5392739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:14-279
               
               
               Cow position:chr21:28989727-28989462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:14-294
               
               
               Cow position:chr21:713055-712768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:14-296
               
               
               Cow position:chr21:10001188-10000913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:14-307
               
               
               Cow position:chr21:7581792-7582087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):120, 71

               
               
               Conread position:14-315
               
               
               Cow position:chr21:33727348-33727647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:14-318
               
               
               Cow position:chr21:48263247-48262942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:14-332
               
               
               Cow position:chr21:49699927-49700239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 61

               
               
               Conread position:14-354
               
               
               Cow position:chr21:46829159-46829495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:14-413
               
               
               Cow position:chr21:7564194-7564598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):94, 204

               
               
               Conread position:15-188
               
               
               Cow position:chr21:9302315-9302482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 51

               
               
               Conread position:15-370
               
               
               Cow position:chr21:17175255-17174898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:16-318
               
               
               Cow position:chr21:21223393-21223101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):214, 38

               
               
               Conread position:19-293
               
               
               Cow position:chr21:18064806-18065088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:19-328
               
               
               Cow position:chr21:4098977-4098676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:19-332
               
               
               Cow position:chr21:4795333-4795019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 6

               
               
               Conread position:20-201
               
               
               Cow position:chr21:19210821-19210646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:20-224
               
               
               Cow position:chr21:28237600-28237805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:20-227
               
               
               Cow position:chr21:8527377-8527571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):159, 64

               
               
               Conread position:20-230
               
               
               Cow position:chr21:6017732-6017519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:20-264
               
               
               Cow position:chr21:42007355-42007595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:20-275
               
               
               Cow position:chr21:18041740-18041989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:21-282
               
               
               Cow position:chr21:24642627-24642365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:21-314
               
               
               Cow position:chr21:18842131-18842423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):209, 70

               
               
               Conread position:21-326
               
               
               Cow position:chr21:2679663-2679355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:21-329
               
               
               Cow position:chr21:16187701-16188000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):210, 70

               
               
               Conread position:21-332
               
               
               Cow position:chr21:37480061-37479753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):191, 67

               
               
               Conread position:22-203
               
               
               Cow position:chr21:30256164-30256340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):153, 71

               
               
               Conread position:22-227
               
               
               Cow position:chr21:10410329-10410125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):115, 57

               
               
               Conread position:22-240
               
               
               Cow position:chr21:17875088-17875299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):117, 50

               
               
               Conread position:22-240
               
               
               Cow position:chr21:23980077-23980289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:22-251
               
               
               Cow position:chr21:2260260-2260476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:22-318
               
               
               Cow position:chr21:32536082-32535787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:22-329
               
               
               Cow position:chr21:28882244-28881942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:22-415
               
               
               Cow position:chr21:4904862-4905245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:23-289
               
               
               Cow position:chr21:44825785-44826044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):210, 69

               
               
               Conread position:23-325
               
               
               Cow position:chr21:29943108-29942810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:23-332
               
               
               Cow position:chr21:28429545-28429246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:23-334
               
               
               Cow position:chr21:18828198-18828514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:24-318
               
               
               Cow position:chr21:3380975-3381270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 68

               
               
               Conread position:24-318
               
               
               Cow position:chr21:3813381-3813672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):155, 5

               
               
               Conread position:24-328
               
               
               Cow position:chr21:31691588-31691278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:25-236
               
               
               Cow position:chr21:30236722-30236920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):114, 52

               
               
               Conread position:25-331
               
               
               Cow position:chr21:4189943-4189632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 89

               
               
               Conread position:25-410
               
               
               Cow position:chr21:42501148-42500758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:26-200
               
               
               Cow position:chr21:7394484-7394314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-328
               
               
               Cow position:chr21:29485083-29484785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 53

               
               
               Conread position:26-332
               
               
               Cow position:chr21:33982706-33983013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:27-291
               
               
               Cow position:chr21:15611244-15610989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):150, 11

               
               
               Conread position:27-318
               
               
               Cow position:chr21:11114816-11114522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:27-415
               
               
               Cow position:chr21:27229691-27230070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:29-307
               
               
               Cow position:chr21:8235457-8235722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 64

               
               
               Conread position:29-318
               
               
               Cow position:chr21:13738658-13738382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):205, 54

               
               
               Conread position:29-332
               
               
               Cow position:chr21:38918300-38918012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):151, 9

               
               
               Conread position:29-360
               
               
               Cow position:chr21:28955606-28955291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:30-198
               
               
               Cow position:chr21:22720325-22720162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:30-209
               
               
               Cow position:chr21:33359940-33360110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:30-247
               
               
               Cow position:chr21:18415153-18414936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:30-264
               
               
               Cow position:chr21:13089371-13089603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-303
               
               
               Cow position:chr21:28810165-28810437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-311
               
               
               Cow position:chr21:15911500-15911218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-317
               
               
               Cow position:chr21:6102164-6102457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:30-318
               
               
               Cow position:chr21:5344763-5344472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:30-318
               
               
               Cow position:chr21:39888652-39888933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:30-332
               
               
               Cow position:chr21:41155962-41155659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:30-415
               
               
               Cow position:chr21:2420596-2420227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):158, 68

               
               
               Conread position:30-428
               
               
               Cow position:chr21:33563105-33562721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):158, 58

               
               
               Conread position:31-269
               
               
               Cow position:chr21:5985222-5985456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:31-317
               
               
               Cow position:chr21:47729925-47730207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 64

               
               
               Conread position:31-326
               
               
               Cow position:chr21:8351215-8351501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:31-332
               
               
               Cow position:chr21:16612721-16612426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:31-415
               
               
               Cow position:chr21:12960804-12961191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:32-243
               
               
               Cow position:chr21:9979875-9980074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 63

               
               
               Conread position:32-318
               
               
               Cow position:chr21:37282397-37282120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):217, 47

               
               
               Conread position:32-330
               
               
               Cow position:chr21:17616220-17616526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:33-318
               
               
               Cow position:chr21:28993522-28993815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:33-325
               
               
               Cow position:chr21:45867028-45866740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:34-240
               
               
               Cow position:chr21:34722695-34722893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:35-318
               
               
               Cow position:chr21:20925411-20925695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:35-332
               
               
               Cow position:chr21:6764608-6764905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:35-332
               
               
               Cow position:chr21:35062179-35061885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):146, 44

               
               
               Conread position:35-415
               
               
               Cow position:chr21:47802167-47802540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:38-329
               
               
               Cow position:chr21:37322214-37322490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:39-260
               
               
               Cow position:chr21:26647920-26648138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):142, 58

               
               
               Conread position:39-346
               
               
               Cow position:chr21:24765370-24765067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:40-237
               
               
               Cow position:chr21:29224773-29224966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:40-314
               
               
               Cow position:chr21:39450074-39450353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:40-328
               
               
               Cow position:chr21:3236613-3236333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:43-294
               
               
               Cow position:chr21:5454907-5455155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:43-311
               
               
               Cow position:chr21:37361380-37361652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:43-326
               
               
               Cow position:chr21:394120-393824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:43-332
               
               
               Cow position:chr21:8985636-8985346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:47-291
               
               
               Cow position:chr21:28617671-28617428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:47-324
               
               
               Cow position:chr21:17410578-17410854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:47-344
               
               
               Cow position:chr21:5137407-5137705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:47-415
               
               
               Cow position:chr21:2785696-2786070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:47-432
               
               
               Cow position:chr21:27743829-27743446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:52-306
               
               
               Cow position:chr21:35897564-35897803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:52-328
               
               
               Cow position:chr21:31676574-31676299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:53-318
               
               
               Cow position:chr21:42459462-42459736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:55-257
               
               
               Cow position:chr21:4568357-4568160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:55-289
               
               
               Cow position:chr21:42190099-42190329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:55-305
               
               
               Cow position:chr21:30592232-30592479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:55-318
               
               
               Cow position:chr21:42145991-42145727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:55-318
               
               
               Cow position:chr21:44109075-44108818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:55-320
               
               
               Cow position:chr21:9862570-9862816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:55-332
               
               
               Cow position:chr21:21480112-21480382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):177, 24

               
               
               Conread position:56-264
               
               
               Cow position:chr21:39809965-39809764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:56-315
               
               
               Cow position:chr21:28443302-28443565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):158, 24

               
               
               Conread position:57-316
               
               
               Cow position:chr21:911896-912154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:57-325
               
               
               Cow position:chr21:21077396-21077133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:58-290
               
               
               Cow position:chr21:36793964-36793731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:59-306
               
               
               Cow position:chr21:49662053-49662294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:62-205
               
               
               Cow position:chr21:15544155-15544290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:62-317
               
               
               Cow position:chr21:42905306-42905566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:62-368
               
               
               Cow position:chr21:34835364-34835662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:63-318
               
               
               Cow position:chr21:42913679-42913935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:63-358
               
               
               Cow position:chr21:2927129-2927432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:64-187
               
               
               Cow position:chr21:14228504-14228624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:64-332
               
               
               Cow position:chr21:40244508-40244231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:71-415
               
               
               Cow position:chr21:31701894-31702234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:76-318
               
               
               Cow position:chr21:15445016-15445268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:79-318
               
               
               Cow position:chr21:12973191-12973442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:81-353
               
               
               Cow position:chr21:5426027-5425757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:82-282
               
               
               Cow position:chr21:10608402-10608608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:82-317
               
               
               Cow position:chr21:34237439-34237207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 46

               
               
               Conread position:83-310
               
               
               Cow position:chr21:42024170-42023943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:83-318
               
               
               Cow position:chr21:8618326-8618085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:83-318
               
               
               Cow position:chr21:21216093-21216330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:83-328
               
               
               Cow position:chr21:41957127-41957373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:83-332
               
               
               Cow position:chr21:48250977-48251233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:84-316
               
               
               Cow position:chr21:12617186-12616952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-318
               
               
               Cow position:chr21:7132419-7132651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):146, 22

               
               
               Conread position:84-333
               
               
               Cow position:chr21:46264219-46263972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:85-289
               
               
               Cow position:chr21:32297460-32297671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:85-318
               
               
               Cow position:chr21:42053217-42053454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:85-331
               
               
               Cow position:chr21:47066851-47067089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:87-309
               
               
               Cow position:chr21:46973088-46973307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:87-318
               
               
               Cow position:chr21:18495015-18494777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:87-325
               
               
               Cow position:chr21:35569336-35569580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:88-318
               
               
               Cow position:chr21:45151576-45151812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:89-318
               
               
               Cow position:chr21:8289588-8289830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:89-364
               
               
               Cow position:chr21:28944321-28944599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:89-383
               
               
               Cow position:chr21:8931846-8932123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:89-415
               
               
               Cow position:chr21:30990235-30990546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):148, 8

               
               
               Conread position:90-326
               
               
               Cow position:chr21:40058850-40058609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 209

               
               
               Conread position:90-331
               
               
               Cow position:chr21:15867352-15867110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:91-264
               
               
               Cow position:chr21:2294030-2293857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:91-405
               
               
               Cow position:chr21:20910053-20910379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 62

               
               
               Conread position:92-348
               
               
               Cow position:chr21:29247819-29248063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:92-368
               
               
               Cow position:chr21:21143944-21143660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:92-403
               
               
               Cow position:chr21:18783646-18783949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:92-415
               
               
               Cow position:chr21:23984240-23984562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:93-240
               
               
               Cow position:chr21:46470010-46469862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:93-318
               
               
               Cow position:chr21:17302338-17302565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:93-415
               
               
               Cow position:chr21:4998445-4998763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 208

               
               
               Conread position:94-328
               
               
               Cow position:chr21:1464271-1464030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 233

               
               
               Conread position:94-336
               
               
               Cow position:chr21:45330562-45330815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:95-318
               
               
               Cow position:chr21:9278418-9278183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:96-313
               
               
               Cow position:chr21:802270-802478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:96-335
               
               
               Cow position:chr21:18935797-18935555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:97-318
               
               
               Cow position:chr21:33791329-33791557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:100-318
               
               
               Cow position:chr21:24094716-24094933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:100-318
               
               
               Cow position:chr21:33210235-33210009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:100-415
               
               
               Cow position:chr21:4080391-4080076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:101-335
               
               
               Cow position:chr21:42170669-42170424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 209

               
               
               Conread position:104-316
               
               
               Cow position:chr21:28027836-28027616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:104-318
               
               
               Cow position:chr21:48484417-48484630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:104-330
               
               
               Cow position:chr21:18932515-18932289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 43

               
               
               Conread position:106-291
               
               
               Cow position:chr21:27624736-27624550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:106-317
               
               
               Cow position:chr21:34738638-34738410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:107-332
               
               
               Cow position:chr21:34659061-34658831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:108-293
               
               
               Cow position:chr21:26829232-26829410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:109-306
               
               
               Cow position:chr21:9998692-9998897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 195

               
               
               Conread position:111-317
               
               
               Cow position:chr21:13395575-13395368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:112-318
               
               
               Cow position:chr21:42463812-42464033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:112-415
               
               
               Cow position:chr21:32237317-32237022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:113-274
               
               
               Cow position:chr21:938049-937894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:113-308
               
               
               Cow position:chr21:29979737-29979935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:114-318
               
               
               Cow position:chr21:23822187-23821979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 169

               
               
               Conread position:114-326
               
               
               Cow position:chr21:23478697-23478916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 182

               
               
               Conread position:115-318
               
               
               Cow position:chr21:28512548-28512343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:115-396
               
               
               Cow position:chr21:36819193-36819482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:117-318
               
               
               Cow position:chr21:12366399-12366198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:117-318
               
               
               Cow position:chr21:24714674-24714464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 180

               
               
               Conread position:117-331
               
               
               Cow position:chr21:82096-81868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-414
               
               
               Cow position:chr21:33419706-33419993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:120-332
               
               
               Cow position:chr21:13303833-13303616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:123-331
               
               
               Cow position:chr21:23683559-23683348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:123-331
               
               
               Cow position:chr21:42348663-42348880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:127-318
               
               
               Cow position:chr21:13163897-13163704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 173

               
               
               Conread position:138-316
               
               
               Cow position:chr21:4268871-4268686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:141-328
               
               
               Cow position:chr21:24797679-24797496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 87

               
               
               Conread position:145-317
               
               
               Cow position:chr21:42465821-42465641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:146-415
               
               
               Cow position:chr21:31159250-31158977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:155-333
               
               
               Cow position:chr21:34254301-34254486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:158-333
               
               
               Cow position:chr21:13256779-13256600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:159-307
               
               
               Cow position:chr21:35897456-35897304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:166-311
               
               
               Cow position:chr21:1511036-1510891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-318
               
               
               Cow position:chr21:28029365-28029208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:169-318
               
               
               Cow position:chr21:28907683-28907833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:169-326
               
               
               Cow position:chr21:20162502-20162338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:172-332
               
               
               Cow position:chr21:17282666-17282500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:174-346
               
               
               Cow position:chr21:46132019-46132195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:176-415
               
               
               Cow position:chr21:31278735-31278504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 161

               
               
               Conread position:177-412
               
               
               Cow position:chr21:20548955-20549193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:183-353
               
               
               Cow position:chr21:21000080-21000250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:183-405
               
               
               Cow position:chr21:5418811-5418582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:1-203
               
               
               Cow position:chr22:17193451-17193250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):136, 86

               
               
               Conread position:1-257
               
               
               Cow position:chr22:27835594-27835343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 89

               
               
               Conread position:1-258
               
               
               Cow position:chr22:16053368-16053116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:1-282
               
               
               Cow position:chr22:10632975-10632695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:1-289
               
               
               Cow position:chr22:27825901-27825609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:1-317
               
               
               Cow position:chr22:10295096-10294795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:1-318
               
               
               Cow position:chr22:1484924-1484606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:1-318
               
               
               Cow position:chr22:3950313-3949985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:1-318
               
               
               Cow position:chr22:11257687-11257992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:1-318
               
               
               Cow position:chr22:18196571-18196254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:1-318
               
               
               Cow position:chr22:29013941-29013623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:1-321
               
               
               Cow position:chr22:17294875-17295187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:1-332
               
               
               Cow position:chr22:15398517-15398848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):5, 84

               
               
               Conread position:1-332
               
               
               Cow position:chr22:26134163-26134505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:1-332
               
               
               Cow position:chr22:38930446-38930784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:1-333
               
               
               Cow position:chr22:38439096-38439429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-415
               
               
               Cow position:chr22:10122439-10122044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:1-415
               
               
               Cow position:chr22:16273701-16273289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:2-328
               
               
               Cow position:chr22:2403940-2403607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:2-333
               
               
               Cow position:chr22:29954948-29955270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 23

               
               
               Conread position:2-399
               
               
               Cow position:chr22:14844626-14844237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):183, 72

               
               
               Conread position:3-296
               
               
               Cow position:chr22:15666265-15665980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:3-318
               
               
               Cow position:chr22:10303073-10302754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):136, 83

               
               
               Conread position:4-202
               
               
               Cow position:chr22:44410777-44410590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:4-264
               
               
               Cow position:chr22:41853961-41853694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:4-269
               
               
               Cow position:chr22:10677935-10678192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):213, 34

               
               
               Conread position:7-229
               
               
               Cow position:chr22:15358299-15358080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:7-238
               
               
               Cow position:chr22:6096964-6097199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 123

               
               
               Conread position:7-288
               
               
               Cow position:chr22:19738520-19738804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-300
               
               
               Cow position:chr22:22223240-22222954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-303
               
               
               Cow position:chr22:5384708-5384414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-307
               
               
               Cow position:chr22:42605690-42605387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 251

               
               
               Conread position:7-317
               
               
               Cow position:chr22:17992978-17993285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:7-318
               
               
               Cow position:chr22:22160779-22160465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-328
               
               
               Cow position:chr22:1265871-1266201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-330
               
               
               Cow position:chr22:21355088-21355409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-330
               
               
               Cow position:chr22:43119676-43119997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-335
               
               
               Cow position:chr22:7301782-7302118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-357
               
               
               Cow position:chr22:19775379-19775720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:7-357
               
               
               Cow position:chr22:22997530-22997184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:7-364
               
               
               Cow position:chr22:34750727-34750375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 7

               
               
               Conread position:7-415
               
               
               Cow position:chr22:8412581-8412179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:8-307
               
               
               Cow position:chr22:13841191-13840893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:8-318
               
               
               Cow position:chr22:4583611-4583314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:8-318
               
               
               Cow position:chr22:19652931-19653237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 67

               
               
               Conread position:8-332
               
               
               Cow position:chr22:32895268-32894933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:8-333
               
               
               Cow position:chr22:6202971-6202642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:9-137
               
               
               Cow position:chr22:35029320-35029195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:9-151
               
               
               Cow position:chr22:10553634-10553770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-179
               
               
               Cow position:chr22:13094450-13094285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:9-187
               
               
               Cow position:chr22:4135667-4135497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-187
               
               
               Cow position:chr22:47555899-47555730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-203
               
               
               Cow position:chr22:21325682-21325871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:9-204
               
               
               Cow position:chr22:8090481-8090666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-222
               
               
               Cow position:chr22:1874744-1874537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:9-227
               
               
               Cow position:chr22:2912538-2912743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-227
               
               
               Cow position:chr22:33399438-33399642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:9-229
               
               
               Cow position:chr22:3241652-3241859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-232
               
               
               Cow position:chr22:9668627-9668399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:9-235
               
               
               Cow position:chr22:12313476-12313254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 76

               
               
               Conread position:9-236
               
               
               Cow position:chr22:27740941-27740718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-238
               
               
               Cow position:chr22:24628607-24628822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-240
               
               
               Cow position:chr22:17132359-17132584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-245
               
               
               Cow position:chr22:11458869-11458650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-252
               
               
               Cow position:chr22:19173747-19173512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-257
               
               
               Cow position:chr22:15025059-15025299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-258
               
               
               Cow position:chr22:12315862-12315615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-261
               
               
               Cow position:chr22:2524014-2523763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:9-261
               
               
               Cow position:chr22:16650148-16650402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-264
               
               
               Cow position:chr22:23689153-23689409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-265
               
               
               Cow position:chr22:27274649-27274896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:9-279
               
               
               Cow position:chr22:13849402-13849667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:9-282
               
               
               Cow position:chr22:15068478-15068205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):114, 81

               
               
               Conread position:9-283
               
               
               Cow position:chr22:6149340-6149607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:9-290
               
               
               Cow position:chr22:14690920-14691204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-291
               
               
               Cow position:chr22:11613475-11613192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:9-293
               
               
               Cow position:chr22:1640249-1640540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-293
               
               
               Cow position:chr22:10315127-10314846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:9-293
               
               
               Cow position:chr22:10983401-10983113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-293
               
               
               Cow position:chr22:13300462-13300179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):210, 78

               
               
               Conread position:9-293
               
               
               Cow position:chr22:20862699-20862980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:9-293
               
               
               Cow position:chr22:23403595-23403872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-309
               
               
               Cow position:chr22:8733286-8733569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:9-309
               
               
               Cow position:chr22:25629712-25630020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:9-310
               
               
               Cow position:chr22:6327718-6328013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):203, 70

               
               
               Conread position:9-310
               
               
               Cow position:chr22:7852015-7851711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-311
               
               
               Cow position:chr22:590390-590094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):247, 70

               
               
               Conread position:9-311
               
               
               Cow position:chr22:3965237-3964936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-311
               
               
               Cow position:chr22:8116037-8116331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-311
               
               
               Cow position:chr22:14178776-14179080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):128, 88

               
               
               Conread position:9-311
               
               
               Cow position:chr22:31592805-31593110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:9-315
               
               
               Cow position:chr22:6754216-6754508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-315
               
               
               Cow position:chr22:15039133-15039438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:9-315
               
               
               Cow position:chr22:40120825-40121132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 77

               
               
               Conread position:9-316
               
               
               Cow position:chr22:2627631-2627322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:9-316
               
               
               Cow position:chr22:14143063-14143360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):131, 46

               
               
               Conread position:9-316
               
               
               Cow position:chr22:28665334-28665015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-316
               
               
               Cow position:chr22:30699232-30698926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-317
               
               
               Cow position:chr22:644717-645015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-317
               
               
               Cow position:chr22:1279334-1279641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-317
               
               
               Cow position:chr22:2470189-2470502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):170, 131

               
               
               Conread position:9-317
               
               
               Cow position:chr22:2502876-2502583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:9-317
               
               
               Cow position:chr22:4535278-4535581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-317
               
               
               Cow position:chr22:12968018-12968324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr22:3987567-3987256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-318
               
               
               Cow position:chr22:4119511-4119824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr22:4651228-4650925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:9-318
               
               
               Cow position:chr22:7838641-7838349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr22:8481695-8481391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr22:10919801-10920120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr22:13866716-13866390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr22:13957593-13957906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):152, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr22:14091172-14091487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr22:14376361-14376649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr22:15490705-15490403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:9-318
               
               
               Cow position:chr22:17814283-17813972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-318
               
               
               Cow position:chr22:19047765-19048059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-318
               
               
               Cow position:chr22:22860861-22861167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:9-318
               
               
               Cow position:chr22:23180991-23181290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr22:23804925-23805240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):87, 93

               
               
               Conread position:9-318
               
               
               Cow position:chr22:25246963-25246654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr22:27819053-27818747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr22:30515308-30514999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:9-318
               
               
               Cow position:chr22:31196449-31196752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 133

               
               
               Conread position:9-318
               
               
               Cow position:chr22:34726719-34726418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr22:37324595-37324291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr22:39472313-39472632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:9-318
               
               
               Cow position:chr22:44717772-44717455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:9-320
               
               
               Cow position:chr22:24509620-24509919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):308, 77

               
               
               Conread position:9-325
               
               
               Cow position:chr22:28146727-28146421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):172, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr22:1609718-1610020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:9-326
               
               
               Cow position:chr22:6215505-6215818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-326
               
               
               Cow position:chr22:21746697-21746375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr22:30094298-30093982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 92

               
               
               Conread position:9-326
               
               
               Cow position:chr22:34398405-34398719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-326
               
               
               Cow position:chr22:34475949-34476264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 84

               
               
               Conread position:9-326
               
               
               Cow position:chr22:46567841-46568153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:9-328
               
               
               Cow position:chr22:6092603-6092908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:9-328
               
               
               Cow position:chr22:16621227-16620909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-328
               
               
               Cow position:chr22:26141326-26141008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:9-328
               
               
               Cow position:chr22:26339805-26339493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 83

               
               
               Conread position:9-328
               
               
               Cow position:chr22:30483966-30483646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:9-330
               
               
               Cow position:chr22:11130921-11130604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-330
               
               
               Cow position:chr22:28071610-28071286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-331
               
               
               Cow position:chr22:1309683-1309996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-331
               
               
               Cow position:chr22:34895018-34894703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-332
               
               
               Cow position:chr22:2623471-2623784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:9-332
               
               
               Cow position:chr22:3317172-3316859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr22:4645824-4645507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr22:9372572-9372250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 80

               
               
               Conread position:9-332
               
               
               Cow position:chr22:10162018-10161695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):221, 80

               
               
               Conread position:9-332
               
               
               Cow position:chr22:10631437-10631105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr22:11813672-11813985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 131

               
               
               Conread position:9-332
               
               
               Cow position:chr22:12681749-12682062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-332
               
               
               Cow position:chr22:21568048-21567733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr22:23830981-23830662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):203, 98

               
               
               Conread position:9-332
               
               
               Cow position:chr22:23857097-23856778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr22:25943526-25943211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr22:34441582-34441905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):205, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr22:38977892-38977578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:9-333
               
               
               Cow position:chr22:4075835-4076169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:9-333
               
               
               Cow position:chr22:34712777-34712443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:9-334
               
               
               Cow position:chr22:18926407-18926079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-334
               
               
               Cow position:chr22:27581491-27581177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:9-334
               
               
               Cow position:chr22:34616357-34616037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 160

               
               
               Conread position:9-334
               
               
               Cow position:chr22:35753258-35753578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:9-335
               
               
               Cow position:chr22:17152728-17152406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:9-335
               
               
               Cow position:chr22:32188803-32189112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):113, 79

               
               
               Conread position:9-337
               
               
               Cow position:chr22:27328843-27329158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:9-340
               
               
               Cow position:chr22:30049515-30049853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:9-342
               
               
               Cow position:chr22:28057999-28058321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:9-342
               
               
               Cow position:chr22:37029557-37029882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 17

               
               
               Conread position:9-352
               
               
               Cow position:chr22:845954-845613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-364
               
               
               Cow position:chr22:6494212-6493870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:9-365
               
               
               Cow position:chr22:30964179-30963829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 83

               
               
               Conread position:9-368
               
               
               Cow position:chr22:534550-534187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-368
               
               
               Cow position:chr22:22613157-22612805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):238, 70

               
               
               Conread position:9-369
               
               
               Cow position:chr22:4060896-4061248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 70

               
               
               Conread position:9-405
               
               
               Cow position:chr22:8883062-8882684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):184, 34

               
               
               Conread position:9-414
               
               
               Cow position:chr22:40374660-40374262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr22:864465-864865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr22:8324290-8323902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr22:9127459-9127049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:9-415
               
               
               Cow position:chr22:20626888-20626497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-415
               
               
               Cow position:chr22:23176390-23176804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:9-415
               
               
               Cow position:chr22:25742898-25743312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):168, 70

               
               
               Conread position:10-290
               
               
               Cow position:chr22:8302795-8303078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:10-290
               
               
               Cow position:chr22:43812371-43812646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:10-318
               
               
               Cow position:chr22:16044366-16044685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:10-324
               
               
               Cow position:chr22:22155655-22155339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:10-332
               
               
               Cow position:chr22:226404-226706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:10-332
               
               
               Cow position:chr22:27322364-27322049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-415
               
               
               Cow position:chr22:3960235-3960641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:11-188
               
               
               Cow position:chr22:10609407-10609232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:11-210
               
               
               Cow position:chr22:40789615-40789425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:11-235
               
               
               Cow position:chr22:11745855-11746072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 12

               
               
               Conread position:11-242
               
               
               Cow position:chr22:43131509-43131721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:11-245
               
               
               Cow position:chr22:12389148-12388913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 25

               
               
               Conread position:11-245
               
               
               Cow position:chr22:42945999-42946234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:11-260
               
               
               Cow position:chr22:10421081-10420833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-274
               
               
               Cow position:chr22:27047364-27047612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:11-282
               
               
               Cow position:chr22:15154050-15153787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:11-293
               
               
               Cow position:chr22:40387201-40386941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 69

               
               
               Conread position:11-296
               
               
               Cow position:chr22:16533123-16532846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:11-307
               
               
               Cow position:chr22:32661559-32661267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:11-311
               
               
               Cow position:chr22:4988511-4988808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):221, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr22:2071012-2070715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:11-318
               
               
               Cow position:chr22:4990118-4990427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:11-318
               
               
               Cow position:chr22:13769526-13769227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:11-318
               
               
               Cow position:chr22:24611043-24611332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:11-318
               
               
               Cow position:chr22:33448032-33448331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:11-318
               
               
               Cow position:chr22:45132598-45132906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-329
               
               
               Cow position:chr22:912147-911835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:11-330
               
               
               Cow position:chr22:23758963-23759280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:11-330
               
               
               Cow position:chr22:37201898-37201589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-331
               
               
               Cow position:chr22:10339070-10339381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):223, 24

               
               
               Conread position:11-332
               
               
               Cow position:chr22:8840654-8840317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):74, 302

               
               
               Conread position:11-332
               
               
               Cow position:chr22:10685039-10685352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):128, 66

               
               
               Conread position:11-332
               
               
               Cow position:chr22:13011219-13011547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:11-332
               
               
               Cow position:chr22:14924683-14924994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:11-332
               
               
               Cow position:chr22:16812115-16812433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 66

               
               
               Conread position:11-333
               
               
               Cow position:chr22:26097571-26097884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:11-333
               
               
               Cow position:chr22:44180642-44180320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:11-363
               
               
               Cow position:chr22:44924008-44924363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-394
               
               
               Cow position:chr22:41245304-41244918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:11-415
               
               
               Cow position:chr22:5337549-5337942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:11-415
               
               
               Cow position:chr22:7153930-7153537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:11-415
               
               
               Cow position:chr22:11778561-11778958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:11-415
               
               
               Cow position:chr22:40349392-40349001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:13-318
               
               
               Cow position:chr22:19341248-19340946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:13-334
               
               
               Cow position:chr22:42612506-42612186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):217, 75

               
               
               Conread position:14-205
               
               
               Cow position:chr22:31154000-31153817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:14-222
               
               
               Cow position:chr22:45846189-45845990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:14-231
               
               
               Cow position:chr22:26969829-26969617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-289
               
               
               Cow position:chr22:23827351-23827083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 80

               
               
               Conread position:14-296
               
               
               Cow position:chr22:4108684-4108973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:14-300
               
               
               Cow position:chr22:7165008-7164716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 74

               
               
               Conread position:14-318
               
               
               Cow position:chr22:21012431-21012134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:14-318
               
               
               Cow position:chr22:41829194-41829489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):217, 72

               
               
               Conread position:14-332
               
               
               Cow position:chr22:4043979-4043663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):228, 92

               
               
               Conread position:14-332
               
               
               Cow position:chr22:21502791-21502466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):216, 74

               
               
               Conread position:14-334
               
               
               Cow position:chr22:15090788-15090468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-335
               
               
               Cow position:chr22:38939894-38940222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:14-360
               
               
               Cow position:chr22:23855019-23854682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:14-413
               
               
               Cow position:chr22:26184115-26184503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:14-415
               
               
               Cow position:chr22:33901038-33901420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:15-240
               
               
               Cow position:chr22:32698805-32698586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):166, 25

               
               
               Conread position:15-334
               
               
               Cow position:chr22:13187927-13187600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:15-338
               
               
               Cow position:chr22:39696334-39696021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:15-358
               
               
               Cow position:chr22:9521188-9520854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 77

               
               
               Conread position:16-263
               
               
               Cow position:chr22:6574787-6574542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):124, 59

               
               
               Conread position:16-318
               
               
               Cow position:chr22:39302955-39303262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:16-324
               
               
               Cow position:chr22:59661-59344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:16-332
               
               
               Cow position:chr22:34953859-34953530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:16-342
               
               
               Cow position:chr22:39293699-39294023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):147, 63

               
               
               Conread position:18-296
               
               
               Cow position:chr22:10962918-10963193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:18-312
               
               
               Cow position:chr22:30471651-30471943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:19-245
               
               
               Cow position:chr22:33386468-33386682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:19-307
               
               
               Cow position:chr22:12800712-12800429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:19-358
               
               
               Cow position:chr22:27224168-27223836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:20-136
               
               
               Cow position:chr22:45752854-45752740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:20-235
               
               
               Cow position:chr22:23121962-23122191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:20-292
               
               
               Cow position:chr22:33414979-33415252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:20-318
               
               
               Cow position:chr22:1975654-1975356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-318
               
               
               Cow position:chr22:3325632-3325325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:21-179
               
               
               Cow position:chr22:12892327-12892479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 78

               
               
               Conread position:21-217
               
               
               Cow position:chr22:22553201-22553386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:21-248
               
               
               Cow position:chr22:1849113-1848882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:21-317
               
               
               Cow position:chr22:2913318-2913024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:21-318
               
               
               Cow position:chr22:3993649-3993354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-318
               
               
               Cow position:chr22:41971115-41971410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 79

               
               
               Conread position:21-328
               
               
               Cow position:chr22:3250955-3251255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:21-330
               
               
               Cow position:chr22:17949933-17950225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):118, 62

               
               
               Conread position:21-352
               
               
               Cow position:chr22:15567977-15568309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):205, 51

               
               
               Conread position:21-412
               
               
               Cow position:chr22:14365919-14366296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):211, 58

               
               
               Conread position:22-246
               
               
               Cow position:chr22:16291886-16292096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:22-310
               
               
               Cow position:chr22:4993872-4994169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:22-318
               
               
               Cow position:chr22:30955065-30954783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 54

               
               
               Conread position:22-331
               
               
               Cow position:chr22:32480442-32480734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:23-208
               
               
               Cow position:chr22:25540036-25539849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:23-305
               
               
               Cow position:chr22:2010839-2010556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:23-318
               
               
               Cow position:chr22:6610313-6610608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):160, 62

               
               
               Conread position:23-333
               
               
               Cow position:chr22:4563399-4563091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 59

               
               
               Conread position:24-315
               
               
               Cow position:chr22:15959731-15960024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:24-318
               
               
               Cow position:chr22:41982682-41982971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):223, 55

               
               
               Conread position:24-328
               
               
               Cow position:chr22:29642150-29641843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):159, 63

               
               
               Conread position:24-413
               
               
               Cow position:chr22:16915099-16915473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):274, 8

               
               
               Conread position:25-318
               
               
               Cow position:chr22:31646527-31646238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):193, 50

               
               
               Conread position:26-178
               
               
               Cow position:chr22:9597543-9597691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:26-240
               
               
               Cow position:chr22:16823136-16822929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-293
               
               
               Cow position:chr22:7882589-7882319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-314
               
               
               Cow position:chr22:12946140-12946418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:26-315
               
               
               Cow position:chr22:30710439-30710149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:26-317
               
               
               Cow position:chr22:25221861-25222155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:26-318
               
               
               Cow position:chr22:24066195-24066491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):113, 136

               
               
               Conread position:26-318
               
               
               Cow position:chr22:28351622-28351912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:26-328
               
               
               Cow position:chr22:14638446-14638731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-332
               
               
               Cow position:chr22:3842654-3842356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:26-332
               
               
               Cow position:chr22:16251536-16251833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:26-332
               
               
               Cow position:chr22:18259256-18258958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-335
               
               
               Cow position:chr22:17764416-17764102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-335
               
               
               Cow position:chr22:21890323-21890632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):204, 12

               
               
               Conread position:26-336
               
               
               Cow position:chr22:25361521-25361217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:26-360
               
               
               Cow position:chr22:24175859-24176174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):163, 11

               
               
               Conread position:26-415
               
               
               Cow position:chr22:43291864-43292247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:27-293
               
               
               Cow position:chr22:10585670-10585932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):215, 64

               
               
               Conread position:27-318
               
               
               Cow position:chr22:4017510-4017219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:27-318
               
               
               Cow position:chr22:13286488-13286187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:27-318
               
               
               Cow position:chr22:30269445-30269159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):112, 66

               
               
               Conread position:27-415
               
               
               Cow position:chr22:41270968-41271335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:28-317
               
               
               Cow position:chr22:23009908-23010188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:29-304
               
               
               Cow position:chr22:5467330-5467611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:29-339
               
               
               Cow position:chr22:38980926-38980630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-344
               
               
               Cow position:chr22:23833323-23833014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:30-318
               
               
               Cow position:chr22:39494167-39494460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:30-325
               
               
               Cow position:chr22:294903-295200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-326
               
               
               Cow position:chr22:27550387-27550090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:30-332
               
               
               Cow position:chr22:13688068-13688382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):112, 55

               
               
               Conread position:30-332
               
               
               Cow position:chr22:14882082-14882381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):182, 49

               
               
               Conread position:30-332
               
               
               Cow position:chr22:37145357-37145076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):150, 62

               
               
               Conread position:30-342
               
               
               Cow position:chr22:46610750-46611061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:31-290
               
               
               Cow position:chr22:22146261-22145998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-415
               
               
               Cow position:chr22:22022919-22022545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:33-318
               
               
               Cow position:chr22:6122877-6123151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:35-247
               
               
               Cow position:chr22:10981413-10981206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:35-318
               
               
               Cow position:chr22:26490496-26490205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:35-332
               
               
               Cow position:chr22:24734287-24734581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:35-335
               
               
               Cow position:chr22:28370971-28370673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:36-345
               
               
               Cow position:chr22:12777567-12777866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):103, 48

               
               
               Conread position:37-364
               
               
               Cow position:chr22:26659074-26658753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:38-205
               
               
               Cow position:chr22:15668446-15668613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-332
               
               
               Cow position:chr22:13670148-13670440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:38-413
               
               
               Cow position:chr22:36539641-36540018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:38-415
               
               
               Cow position:chr22:19787655-19788028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:39-318
               
               
               Cow position:chr22:853042-852773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):148, 33

               
               
               Conread position:39-318
               
               
               Cow position:chr22:32651525-32651251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:40-210
               
               
               Cow position:chr22:26506704-26506868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):102, 53

               
               
               Conread position:40-318
               
               
               Cow position:chr22:23865490-23865206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:40-318
               
               
               Cow position:chr22:34606603-34606337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):141, 51

               
               
               Conread position:40-415
               
               
               Cow position:chr22:11837177-11837546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 174

               
               
               Conread position:41-333
               
               
               Cow position:chr22:33094583-33094290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):6, 53

               
               
               Conread position:42-332
               
               
               Cow position:chr22:14602373-14602665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:43-264
               
               
               Cow position:chr22:4974406-4974622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:43-318
               
               
               Cow position:chr22:13951197-13950916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:44-221
               
               
               Cow position:chr22:15020382-15020557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:46-332
               
               
               Cow position:chr22:11500793-11500512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:46-334
               
               
               Cow position:chr22:30712774-30712479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:47-232
               
               
               Cow position:chr22:12599100-12598921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:47-277
               
               
               Cow position:chr22:14002479-14002263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:47-317
               
               
               Cow position:chr22:4632018-4631751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:47-318
               
               
               Cow position:chr22:2702244-2701972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:47-318
               
               
               Cow position:chr22:28731690-28731430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:48-327
               
               
               Cow position:chr22:27401557-27401280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:49-368
               
               
               Cow position:chr22:25342027-25341714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:51-331
               
               
               Cow position:chr22:25477080-25476795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:52-222
               
               
               Cow position:chr22:10292976-10292806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:52-232
               
               
               Cow position:chr22:11497209-11497027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:52-325
               
               
               Cow position:chr22:35533343-35533618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:55-242
               
               
               Cow position:chr22:23580834-23581012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-284
               
               
               Cow position:chr22:27512150-27512384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 226

               
               
               Conread position:55-300
               
               
               Cow position:chr22:37554614-37554864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-311
               
               
               Cow position:chr22:2434059-2433791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 235

               
               
               Conread position:55-313
               
               
               Cow position:chr22:26749039-26749300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:55-318
               
               
               Cow position:chr22:41044904-41045170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:55-318
               
               
               Cow position:chr22:45271588-45271323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:55-355
               
               
               Cow position:chr22:6360481-6360781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-415
               
               
               Cow position:chr22:28179863-28179499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:56-205
               
               
               Cow position:chr22:8157827-8157969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:56-237
               
               
               Cow position:chr22:18218885-18219062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:57-316
               
               
               Cow position:chr22:9734858-9734601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:58-317
               
               
               Cow position:chr22:29256308-29256569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:60-318
               
               
               Cow position:chr22:15950375-15950633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:62-311
               
               
               Cow position:chr22:42684907-42684650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:64-318
               
               
               Cow position:chr22:1821875-1822130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:64-318
               
               
               Cow position:chr22:26107055-26106802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:64-318
               
               
               Cow position:chr22:45685024-45685288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:66-330
               
               
               Cow position:chr22:26316464-26316211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:66-362
               
               
               Cow position:chr22:35902702-35902992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 47

               
               
               Conread position:69-264
               
               
               Cow position:chr22:1081497-1081301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:69-318
               
               
               Cow position:chr22:43044164-43044420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:73-312
               
               
               Cow position:chr22:3252966-3253186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:74-229
               
               
               Cow position:chr22:11601029-11600875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:74-318
               
               
               Cow position:chr22:29090903-29091128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:74-348
               
               
               Cow position:chr22:15428453-15428727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:75-332
               
               
               Cow position:chr22:11038252-11038004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):113, 5

               
               
               Conread position:77-264
               
               
               Cow position:chr22:25764494-25764678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:79-245
               
               
               Cow position:chr22:3541734-3541899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 134

               
               
               Conread position:79-332
               
               
               Cow position:chr22:6204303-6204564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 199

               
               
               Conread position:83-318
               
               
               Cow position:chr22:7913461-7913222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:83-331
               
               
               Cow position:chr22:30689618-30689362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:83-332
               
               
               Cow position:chr22:40048537-40048293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:84-318
               
               
               Cow position:chr22:1067933-1068171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:84-318
               
               
               Cow position:chr22:26786334-26786097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):149, 13

               
               
               Conread position:84-331
               
               
               Cow position:chr22:1342717-1342470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:85-293
               
               
               Cow position:chr22:12974408-12974624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:85-332
               
               
               Cow position:chr22:891163-891409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:86-368
               
               
               Cow position:chr22:1591002-1590713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:87-259
               
               
               Cow position:chr22:3533918-3533749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:88-318
               
               
               Cow position:chr22:6566667-6566899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):51, 218

               
               
               Conread position:88-333
               
               
               Cow position:chr22:36569571-36569813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:89-285
               
               
               Cow position:chr22:33917920-33918122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:89-317
               
               
               Cow position:chr22:19848417-19848650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 183

               
               
               Conread position:89-318
               
               
               Cow position:chr22:4357073-4356843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:89-332
               
               
               Cow position:chr22:7979684-7979445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:89-356
               
               
               Cow position:chr22:23861171-23861437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:89-415
               
               
               Cow position:chr22:13235516-13235191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:90-314
               
               
               Cow position:chr22:2141784-2141564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:90-318
               
               
               Cow position:chr22:35520279-35520519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:91-296
               
               
               Cow position:chr22:20687279-20687059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:91-316
               
               
               Cow position:chr22:38313490-38313718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:92-332
               
               
               Cow position:chr22:13242416-13242166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:92-332
               
               
               Cow position:chr22:34666022-34665782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):97, 47

               
               
               Conread position:92-338
               
               
               Cow position:chr22:2216797-2216548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:92-414
               
               
               Cow position:chr22:2095529-2095205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 253

               
               
               Conread position:92-415
               
               
               Cow position:chr22:5282482-5282163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:92-432
               
               
               Cow position:chr22:13695449-13695778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:94-240
               
               
               Cow position:chr22:1000081-999945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:95-311
               
               
               Cow position:chr22:27292066-27291852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:96-305
               
               
               Cow position:chr22:28357009-28356792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:96-318
               
               
               Cow position:chr22:1791963-1791733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 211

               
               
               Conread position:96-318
               
               
               Cow position:chr22:5042290-5042063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:97-277
               
               
               Cow position:chr22:3945145-3944959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:99-317
               
               
               Cow position:chr22:2476242-2476464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:100-267
               
               
               Cow position:chr22:8397848-8398020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:100-318
               
               
               Cow position:chr22:14601471-14601258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:101-316
               
               
               Cow position:chr22:30119190-30118966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:101-318
               
               
               Cow position:chr22:30473012-30472790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-334
               
               
               Cow position:chr22:30136794-30136550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:101-338
               
               
               Cow position:chr22:4026572-4026335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:104-318
               
               
               Cow position:chr22:1991439-1991233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:104-326
               
               
               Cow position:chr22:45513555-45513784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:106-318
               
               
               Cow position:chr22:27171294-27171515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-326
               
               
               Cow position:chr22:43397974-43397755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:106-434
               
               
               Cow position:chr22:8418428-8418104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):33, 232

               
               
               Conread position:111-296
               
               
               Cow position:chr22:34986157-34986336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):135, 34

               
               
               Conread position:112-330
               
               
               Cow position:chr22:33949044-33949271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:112-332
               
               
               Cow position:chr22:25206011-25206239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:113-309
               
               
               Cow position:chr22:19376663-19376463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:113-318
               
               
               Cow position:chr22:10683708-10683921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:117-333
               
               
               Cow position:chr22:33485651-33485874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 155

               
               
               Conread position:117-341
               
               
               Cow position:chr22:44386456-44386677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:121-318
               
               
               Cow position:chr22:11987268-11987473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:121-318
               
               
               Cow position:chr22:36761574-36761377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:121-332
               
               
               Cow position:chr22:766332-766550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-318
               
               
               Cow position:chr22:11200981-11200787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:122-354
               
               
               Cow position:chr22:9278841-9278613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:123-318
               
               
               Cow position:chr22:31195021-31194816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:127-368
               
               
               Cow position:chr22:13274411-13274164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:128-318
               
               
               Cow position:chr22:14006091-14005895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 150

               
               
               Conread position:128-330
               
               
               Cow position:chr22:27701152-27700946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 175

               
               
               Conread position:131-311
               
               
               Cow position:chr22:21905427-21905245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 5

               
               
               Conread position:131-328
               
               
               Cow position:chr22:15292766-15292962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):111, 8

               
               
               Conread position:133-318
               
               
               Cow position:chr22:28290018-28289829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:133-318
               
               
               Cow position:chr22:34930810-34931004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:133-332
               
               
               Cow position:chr22:36193788-36193591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:136-330
               
               
               Cow position:chr22:11489463-11489276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:137-318
               
               
               Cow position:chr22:5837164-5836977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:137-318
               
               
               Cow position:chr22:42234898-42234721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:138-348
               
               
               Cow position:chr22:14820633-14820839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):182, 26

               
               
               Conread position:138-405
               
               
               Cow position:chr22:1710501-1710229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:150-348
               
               
               Cow position:chr22:40370369-40370173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):147, 74

               
               
               Conread position:150-415
               
               
               Cow position:chr22:28937982-28938253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:151-335
               
               
               Cow position:chr22:33985847-33986038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 155

               
               
               Conread position:152-293
               
               
               Cow position:chr22:27508535-27508396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:152-330
               
               
               Cow position:chr22:9977734-9977552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 150

               
               
               Conread position:155-317
               
               
               Cow position:chr22:22013631-22013466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:155-325
               
               
               Cow position:chr22:22231573-22231394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:155-334
               
               
               Cow position:chr22:34618643-34618461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:155-414
               
               
               Cow position:chr22:36208851-36208582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:155-415
               
               
               Cow position:chr22:13720612-13720878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 193

               
               
               Conread position:155-415
               
               
               Cow position:chr22:41137226-41136970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 144

               
               
               Conread position:156-318
               
               
               Cow position:chr22:45106004-45106175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:156-350
               
               
               Cow position:chr22:25311631-25311834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:158-332
               
               
               Cow position:chr22:8329457-8329279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:160-332
               
               
               Cow position:chr22:12381808-12381629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:161-328
               
               
               Cow position:chr22:13889819-13889650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:163-330
               
               
               Cow position:chr22:28120698-28120523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:165-432
               
               
               Cow position:chr22:26760070-26759808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:169-356
               
               
               Cow position:chr22:6936109-6935922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:175-351
               
               
               Cow position:chr22:18326695-18326872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:179-368
               
               
               Cow position:chr22:26822253-26822065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:183-368
               
               
               Cow position:chr22:16768852-16769043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:185-326
               
               
               Cow position:chr22:31599259-31599119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:188-359
               
               
               Cow position:chr22:12892689-12892864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-261
               
               
               Cow position:chr23:19371008-19371265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:1-264
               
               
               Cow position:chr23:16631336-16631067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:1-266
               
               
               Cow position:chr23:12334276-12334017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:1-290
               
               
               Cow position:chr23:20557779-20558082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:1-291
               
               
               Cow position:chr23:40502448-40502737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-296
               
               
               Cow position:chr23:22396378-22396675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:1-316
               
               
               Cow position:chr23:4608314-4608631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:1-316
               
               
               Cow position:chr23:8006310-8005991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:1-332
               
               
               Cow position:chr23:1605295-1604961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:1-336
               
               
               Cow position:chr23:10085119-10085452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:2-318
               
               
               Cow position:chr23:31607090-31607411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:3-165
               
               
               Cow position:chr23:29069378-29069536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):135, 76

               
               
               Conread position:3-290
               
               
               Cow position:chr23:15743153-15742876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:3-311
               
               
               Cow position:chr23:7402764-7402462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 57

               
               
               Conread position:5-264
               
               
               Cow position:chr23:38973908-38973649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 24

               
               
               Conread position:5-361
               
               
               Cow position:chr23:26949257-26948896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):136, 84

               
               
               Conread position:6-318
               
               
               Cow position:chr23:5617633-5617328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):133, 82

               
               
               Conread position:6-318
               
               
               Cow position:chr23:20171639-20171327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:7-227
               
               
               Cow position:chr23:6031935-6031725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 67

               
               
               Conread position:7-245
               
               
               Cow position:chr23:34356701-34356464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:7-264
               
               
               Cow position:chr23:20248636-20248897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):131, 81

               
               
               Conread position:7-293
               
               
               Cow position:chr23:27544886-27544606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-318
               
               
               Cow position:chr23:20585642-20585963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:7-332
               
               
               Cow position:chr23:9734467-9734154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:7-332
               
               
               Cow position:chr23:38455120-38455450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-332
               
               
               Cow position:chr23:39753173-39752849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 31

               
               
               Conread position:7-335
               
               
               Cow position:chr23:14739507-14739182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:7-349
               
               
               Cow position:chr23:9652425-9652749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-403
               
               
               Cow position:chr23:1337245-1337642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-405
               
               
               Cow position:chr23:11434201-11434597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):153, 44

               
               
               Conread position:7-415
               
               
               Cow position:chr23:40525924-40526312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:8-235
               
               
               Cow position:chr23:23114090-23113865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:8-318
               
               
               Cow position:chr23:4578981-4579286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 95

               
               
               Conread position:8-318
               
               
               Cow position:chr23:25864641-25864933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):6, 53

               
               
               Conread position:9-141
               
               
               Cow position:chr23:39520392-39520519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-179
               
               
               Cow position:chr23:39275948-39275782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-184
               
               
               Cow position:chr23:39780811-39780644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-185
               
               
               Cow position:chr23:3522807-3522639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-191
               
               
               Cow position:chr23:1701228-1701051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-198
               
               
               Cow position:chr23:9226338-9226147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:9-198
               
               
               Cow position:chr23:36172575-36172395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:9-205
               
               
               Cow position:chr23:30951011-30950826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-221
               
               
               Cow position:chr23:349666-349877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-221
               
               
               Cow position:chr23:5436586-5436794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):172, 74

               
               
               Conread position:9-221
               
               
               Cow position:chr23:10829525-10829732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):172, 87

               
               
               Conread position:9-229
               
               
               Cow position:chr23:4329618-4329839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:9-230
               
               
               Cow position:chr23:18415994-18416207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-230
               
               
               Cow position:chr23:27290724-27290937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-232
               
               
               Cow position:chr23:19774825-19774613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-236
               
               
               Cow position:chr23:33622093-33622317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-241
               
               
               Cow position:chr23:1767885-1767660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-245
               
               
               Cow position:chr23:1921170-1921400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-245
               
               
               Cow position:chr23:3282065-3282289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-245
               
               
               Cow position:chr23:5516026-5515793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-257
               
               
               Cow position:chr23:34314897-34315155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 89

               
               
               Conread position:9-261
               
               
               Cow position:chr23:25675643-25675887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-264
               
               
               Cow position:chr23:3191068-3191321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-264
               
               
               Cow position:chr23:21446173-21445920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-264
               
               
               Cow position:chr23:24930015-24930270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):214, 89

               
               
               Conread position:9-264
               
               
               Cow position:chr23:30585594-30585859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:9-264
               
               
               Cow position:chr23:35177375-35177121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:9-268
               
               
               Cow position:chr23:29786289-29786554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 50

               
               
               Conread position:9-279
               
               
               Cow position:chr23:21764979-21764705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:9-279
               
               
               Cow position:chr23:40648675-40648940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):225, 88

               
               
               Conread position:9-280
               
               
               Cow position:chr23:18296863-18296594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-282
               
               
               Cow position:chr23:2501797-2502064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-288
               
               
               Cow position:chr23:24704341-24704058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-290
               
               
               Cow position:chr23:417204-416937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):230, 78

               
               
               Conread position:9-294
               
               
               Cow position:chr23:23409789-23409521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-296
               
               
               Cow position:chr23:5603228-5603500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:9-296
               
               
               Cow position:chr23:10416364-10416652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):131, 90

               
               
               Conread position:9-296
               
               
               Cow position:chr23:36075754-36076050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:9-300
               
               
               Cow position:chr23:12050413-12050132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:9-301
               
               
               Cow position:chr23:40790031-40789750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-309
               
               
               Cow position:chr23:1885116-1885418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-311
               
               
               Cow position:chr23:16699985-16700283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-313
               
               
               Cow position:chr23:6367667-6367359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:9-314
               
               
               Cow position:chr23:26848843-26849148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):124, 141

               
               
               Conread position:9-315
               
               
               Cow position:chr23:15872636-15872949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:9-315
               
               
               Cow position:chr23:18402233-18402534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-316
               
               
               Cow position:chr23:20388594-20388885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):208, 75

               
               
               Conread position:9-316
               
               
               Cow position:chr23:38208783-38208462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-317
               
               
               Cow position:chr23:4562942-4562638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-317
               
               
               Cow position:chr23:13555382-13555678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):169, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr23:16582853-16583160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr23:18697969-18698277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:9-318
               
               
               Cow position:chr23:21452673-21452984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr23:22804781-22804471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr23:25358780-25358480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr23:27563644-27563960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:9-318
               
               
               Cow position:chr23:31493921-31493627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:9-322
               
               
               Cow position:chr23:33940102-33940411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-324
               
               
               Cow position:chr23:13599397-13599087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-325
               
               
               Cow position:chr23:20056810-20057125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-326
               
               
               Cow position:chr23:20744536-20744848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:9-331
               
               
               Cow position:chr23:28206654-28206347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-331
               
               
               Cow position:chr23:39778458-39778149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-332
               
               
               Cow position:chr23:187235-186906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-332
               
               
               Cow position:chr23:534284-533965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-332
               
               
               Cow position:chr23:1923780-1924098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-332
               
               
               Cow position:chr23:14838688-14839000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:9-332
               
               
               Cow position:chr23:21336427-21336754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-332
               
               
               Cow position:chr23:24867366-24867037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-332
               
               
               Cow position:chr23:31601394-31601723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-333
               
               
               Cow position:chr23:18802213-18802539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):130, 98

               
               
               Conread position:9-333
               
               
               Cow position:chr23:40781386-40781062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-337
               
               
               Cow position:chr23:39775783-39775461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:9-338
               
               
               Cow position:chr23:34416618-34416301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:9-340
               
               
               Cow position:chr23:4968467-4968792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-345
               
               
               Cow position:chr23:29345712-29346037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):130, 22

               
               
               Conread position:9-352
               
               
               Cow position:chr23:29034371-29034029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-358
               
               
               Cow position:chr23:17404896-17404559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-366
               
               
               Cow position:chr23:16881106-16881455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-369
               
               
               Cow position:chr23:3967503-3967848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-415
               
               
               Cow position:chr23:1397982-1398374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr23:8911519-8911139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-415
               
               
               Cow position:chr23:11129290-11128893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):183, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr23:21788710-21789111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-415
               
               
               Cow position:chr23:28053328-28052937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:9-416
               
               
               Cow position:chr23:20435007-20435393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:10-263
               
               
               Cow position:chr23:4726846-4726591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 25

               
               
               Conread position:10-270
               
               
               Cow position:chr23:40443916-40443674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):178, 89

               
               
               Conread position:10-296
               
               
               Cow position:chr23:11081132-11080852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 62

               
               
               Conread position:10-317
               
               
               Cow position:chr23:4528821-4529142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:10-332
               
               
               Cow position:chr23:6994927-6995234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-332
               
               
               Cow position:chr23:25669036-25669335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:10-415
               
               
               Cow position:chr23:32309741-32309341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):37, 172

               
               
               Conread position:11-187
               
               
               Cow position:chr23:1655949-1655779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):121, 82

               
               
               Conread position:11-221
               
               
               Cow position:chr23:3244859-3245072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:11-231
               
               
               Cow position:chr23:33570189-33569979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:11-282
               
               
               Cow position:chr23:21659998-21659722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:11-307
               
               
               Cow position:chr23:29521527-29521230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:11-310
               
               
               Cow position:chr23:5707048-5706756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 94

               
               
               Conread position:11-311
               
               
               Cow position:chr23:7845348-7845045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-311
               
               
               Cow position:chr23:13359881-13359576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:11-311
               
               
               Cow position:chr23:40862401-40862095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:11-316
               
               
               Cow position:chr23:6244542-6244836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):219, 25

               
               
               Conread position:11-317
               
               
               Cow position:chr23:1883450-1883143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:11-318
               
               
               Cow position:chr23:1254742-1254426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):170, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr23:3727330-3727652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:11-318
               
               
               Cow position:chr23:9594781-9595080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):128, 17

               
               
               Conread position:11-318
               
               
               Cow position:chr23:19636209-19636514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-318
               
               
               Cow position:chr23:21866797-21866506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr23:26632863-26632549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr23:37065904-37065586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:11-326
               
               
               Cow position:chr23:10414969-10415285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:11-326
               
               
               Cow position:chr23:26986216-26986533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):222, 68

               
               
               Conread position:11-327
               
               
               Cow position:chr23:15287082-15287394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:11-332
               
               
               Cow position:chr23:29626471-29626149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:11-334
               
               
               Cow position:chr23:1647673-1647358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:11-352
               
               
               Cow position:chr23:17092442-17092775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):223, 64

               
               
               Conread position:11-354
               
               
               Cow position:chr23:33711815-33711484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-356
               
               
               Cow position:chr23:26794858-26795193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):178, 73

               
               
               Conread position:11-364
               
               
               Cow position:chr23:36309475-36309130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:11-414
               
               
               Cow position:chr23:1536374-1535983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:11-415
               
               
               Cow position:chr23:10553954-10554351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:13-356
               
               
               Cow position:chr23:40891415-40891074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:13-416
               
               
               Cow position:chr23:13520504-13520117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:14-210
               
               
               Cow position:chr23:26051090-26050897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:14-221
               
               
               Cow position:chr23:33153141-33153339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:14-315
               
               
               Cow position:chr23:4980494-4980791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:14-331
               
               
               Cow position:chr23:3262446-3262763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:14-414
               
               
               Cow position:chr23:5162481-5162088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:14-414
               
               
               Cow position:chr23:40778316-40777924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:15-248
               
               
               Cow position:chr23:2762028-2761807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:15-261
               
               
               Cow position:chr23:1636328-1636088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):124, 57

               
               
               Conread position:16-330
               
               
               Cow position:chr23:5389751-5389438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):147, 59

               
               
               Conread position:16-332
               
               
               Cow position:chr23:645378-645066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:17-282
               
               
               Cow position:chr23:20996508-20996257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:19-331
               
               
               Cow position:chr23:35362730-35363037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:20-277
               
               
               Cow position:chr23:1742403-1742147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:20-318
               
               
               Cow position:chr23:8959641-8959348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:20-318
               
               
               Cow position:chr23:41472667-41472362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:20-334
               
               
               Cow position:chr23:33695726-33696041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:20-335
               
               
               Cow position:chr23:3247634-3247320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:20-415
               
               
               Cow position:chr23:29272161-29271764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:21-197
               
               
               Cow position:chr23:5795522-5795352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:21-276
               
               
               Cow position:chr23:1776589-1776840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):209, 58

               
               
               Conread position:21-291
               
               
               Cow position:chr23:1290342-1290070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):195, 63

               
               
               Conread position:21-311
               
               
               Cow position:chr23:6767950-6767648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 291

               
               
               Conread position:21-315
               
               
               Cow position:chr23:2055749-2055454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 62

               
               
               Conread position:21-326
               
               
               Cow position:chr23:11845321-11845028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 51

               
               
               Conread position:21-332
               
               
               Cow position:chr23:3918052-3918363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:21-344
               
               
               Cow position:chr23:1720938-1721264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:22-311
               
               
               Cow position:chr23:670663-670376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:23-219
               
               
               Cow position:chr23:24984126-24984318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:23-221
               
               
               Cow position:chr23:32479983-32480186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:23-229
               
               
               Cow position:chr23:13946081-13945871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 65

               
               
               Conread position:23-317
               
               
               Cow position:chr23:9599537-9599252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:23-326
               
               
               Cow position:chr23:20194879-20195177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:24-330
               
               
               Cow position:chr23:11045529-11045221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):115, 69

               
               
               Conread position:26-289
               
               
               Cow position:chr23:25378689-25378433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 50

               
               
               Conread position:26-296
               
               
               Cow position:chr23:6224017-6223771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:26-317
               
               
               Cow position:chr23:1803826-1803544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:26-340
               
               
               Cow position:chr23:39806912-39806599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:27-225
               
               
               Cow position:chr23:39083490-39083299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:27-318
               
               
               Cow position:chr23:39309071-39309366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):112, 65

               
               
               Conread position:28-332
               
               
               Cow position:chr23:32555136-32555440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:28-386
               
               
               Cow position:chr23:6592661-6593013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:29-290
               
               
               Cow position:chr23:5723581-5723320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):110, 6

               
               
               Conread position:29-316
               
               
               Cow position:chr23:7220976-7221263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:30-198
               
               
               Cow position:chr23:9713358-9713189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:30-255
               
               
               Cow position:chr23:39813539-39813321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-318
               
               
               Cow position:chr23:1670938-1670666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-332
               
               
               Cow position:chr23:18322387-18322684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:31-279
               
               
               Cow position:chr23:3955452-3955209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:31-327
               
               
               Cow position:chr23:15056604-15056901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:32-318
               
               
               Cow position:chr23:791996-792283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:32-329
               
               
               Cow position:chr23:14164364-14164662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:34-278
               
               
               Cow position:chr23:22399441-22399190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:35-239
               
               
               Cow position:chr23:26942473-26942272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:35-307
               
               
               Cow position:chr23:30662597-30662868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:35-415
               
               
               Cow position:chr23:15710048-15710417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:37-307
               
               
               Cow position:chr23:33601498-33601764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:38-328
               
               
               Cow position:chr23:20781850-20781563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:39-368
               
               
               Cow position:chr23:29242976-29242643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:41-318
               
               
               Cow position:chr23:1321183-1321445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:42-331
               
               
               Cow position:chr23:41285943-41285665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:43-311
               
               
               Cow position:chr23:3208596-3208861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:43-318
               
               
               Cow position:chr23:19978931-19979199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):146, 50

               
               
               Conread position:44-318
               
               
               Cow position:chr23:36128887-36129153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 46

               
               
               Conread position:47-264
               
               
               Cow position:chr23:4942092-4942300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:49-415
               
               
               Cow position:chr23:32961346-32961716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:51-304
               
               
               Cow position:chr23:22674423-22674677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:51-308
               
               
               Cow position:chr23:22530399-22530658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:52-276
               
               
               Cow position:chr23:39028794-39028575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 38

               
               
               Conread position:52-316
               
               
               Cow position:chr23:10853069-10852803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:52-318
               
               
               Cow position:chr23:18367714-18367445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:55-282
               
               
               Cow position:chr23:1068305-1068528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-296
               
               
               Cow position:chr23:5152004-5151759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:55-318
               
               
               Cow position:chr23:38854724-38854985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:56-326
               
               
               Cow position:chr23:19002052-19002327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:60-318
               
               
               Cow position:chr23:10014546-10014294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:62-311
               
               
               Cow position:chr23:12369378-12369624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:62-318
               
               
               Cow position:chr23:19537990-19538245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:62-318
               
               
               Cow position:chr23:37224062-37224317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:62-328
               
               
               Cow position:chr23:33232904-33233166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:63-336
               
               
               Cow position:chr23:14191557-14191283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:64-311
               
               
               Cow position:chr23:20980839-20980601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:64-324
               
               
               Cow position:chr23:406170-406415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:68-264
               
               
               Cow position:chr23:5191524-5191335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:74-264
               
               
               Cow position:chr23:1188906-1189099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:74-332
               
               
               Cow position:chr23:479530-479262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:74-350
               
               
               Cow position:chr23:809164-808879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:79-415
               
               
               Cow position:chr23:11380258-11380618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:80-332
               
               
               Cow position:chr23:16609816-16610075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:81-415
               
               
               Cow position:chr23:12896620-12896947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:82-332
               
               
               Cow position:chr23:7175606-7175355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:83-318
               
               
               Cow position:chr23:587387-587144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:83-415
               
               
               Cow position:chr23:1429812-1430140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:84-318
               
               
               Cow position:chr23:6179725-6179957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:84-333
               
               
               Cow position:chr23:1428797-1428551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:85-317
               
               
               Cow position:chr23:2259602-2259847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 226

               
               
               Conread position:87-279
               
               
               Cow position:chr23:4522993-4523191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:89-291
               
               
               Cow position:chr23:25189327-25189117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:91-326
               
               
               Cow position:chr23:13511715-13511474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:91-332
               
               
               Cow position:chr23:2316780-2316541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:92-315
               
               
               Cow position:chr23:27862311-27862086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:93-239
               
               
               Cow position:chr23:16072348-16072488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:93-334
               
               
               Cow position:chr23:22588282-22588537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:94-300
               
               
               Cow position:chr23:37190607-37190807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:94-318
               
               
               Cow position:chr23:344196-344429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:95-330
               
               
               Cow position:chr23:7596354-7596594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):44, 124

               
               
               Conread position:96-279
               
               
               Cow position:chr23:1490026-1489844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:98-362
               
               
               Cow position:chr23:36199265-36198998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:100-315
               
               
               Cow position:chr23:2179676-2179895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:100-330
               
               
               Cow position:chr23:26319390-26319154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:100-415
               
               
               Cow position:chr23:2371345-2371040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:101-264
               
               
               Cow position:chr23:30999550-30999378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-304
               
               
               Cow position:chr23:29471156-29471356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:101-318
               
               
               Cow position:chr23:23884176-23884391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:101-415
               
               
               Cow position:chr23:5870212-5870527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:102-264
               
               
               Cow position:chr23:30656204-30656372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:105-279
               
               
               Cow position:chr23:31739827-31739646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:107-317
               
               
               Cow position:chr23:12408544-12408761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:107-332
               
               
               Cow position:chr23:21343285-21343511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:108-332
               
               
               Cow position:chr23:39793415-39793188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:109-296
               
               
               Cow position:chr23:37992948-37992760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:109-318
               
               
               Cow position:chr23:360952-361161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:110-317
               
               
               Cow position:chr23:38248856-38248650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:112-318
               
               
               Cow position:chr23:1877913-1878122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:113-337
               
               
               Cow position:chr23:9711623-9711859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:115-318
               
               
               Cow position:chr23:4810711-4810499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:117-318
               
               
               Cow position:chr23:24509657-24509452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:117-332
               
               
               Cow position:chr23:16563796-16563577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-415
               
               
               Cow position:chr23:7392336-7392623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:121-335
               
               
               Cow position:chr23:222020-221802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:124-294
               
               
               Cow position:chr23:4421034-4421204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:128-332
               
               
               Cow position:chr23:9268537-9268325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 179

               
               
               Conread position:133-340
               
               
               Cow position:chr23:38414023-38414230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 35

               
               
               Conread position:134-318
               
               
               Cow position:chr23:5395483-5395676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:134-368
               
               
               Cow position:chr23:4338666-4338909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:138-311
               
               
               Cow position:chr23:11315090-11315261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:138-332
               
               
               Cow position:chr23:26741523-26741715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 84

               
               
               Conread position:138-333
               
               
               Cow position:chr23:1690725-1690522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:139-332
               
               
               Cow position:chr23:28118167-28118366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 167

               
               
               Conread position:142-334
               
               
               Cow position:chr23:14895871-14896070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 164

               
               
               Conread position:149-332
               
               
               Cow position:chr23:35926515-35926329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:152-350
               
               
               Cow position:chr23:29742303-29742101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:155-349
               
               
               Cow position:chr23:9656239-9656053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:164-332
               
               
               Cow position:chr23:9235164-9235328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:164-338
               
               
               Cow position:chr23:1610762-1610583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:169-318
               
               
               Cow position:chr23:7937642-7937790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:179-326
               
               
               Cow position:chr23:26003956-26003805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:182-415
               
               
               Cow position:chr23:30912406-30912643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:184-348
               
               
               Cow position:chr23:11209898-11209728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:184-365
               
               
               Cow position:chr23:11853513-11853698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:188-412
               
               
               Cow position:chr23:9712998-9712776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:440-817
               
               
               Cow position:chr23:24703611-24703223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 123

               
               
               Conread position:1-232
               
               
               Cow position:chr24:22079500-22079273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 25

               
               
               Conread position:1-256
               
               
               Cow position:chr24:16645280-16645537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-265
               
               
               Cow position:chr24:3664216-3663940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 192

               
               
               Conread position:1-269
               
               
               Cow position:chr24:33465581-33465829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:1-277
               
               
               Cow position:chr24:18344103-18343812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr24:28700090-28699781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:1-317
               
               
               Cow position:chr24:38815007-38814695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:1-318
               
               
               Cow position:chr24:28599820-28600131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:1-318
               
               
               Cow position:chr24:32693759-32693425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 197

               
               
               Conread position:1-331
               
               
               Cow position:chr24:18484956-18485290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 92

               
               
               Conread position:1-332
               
               
               Cow position:chr24:212026-211690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:1-342
               
               
               Cow position:chr24:6061359-6061692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 61

               
               
               Conread position:1-360
               
               
               Cow position:chr24:16268089-16268422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:1-415
               
               
               Cow position:chr24:30860677-30860262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:2-332
               
               
               Cow position:chr24:6150060-6149739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):137, 91

               
               
               Conread position:2-412
               
               
               Cow position:chr24:37386308-37386721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):93, 112

               
               
               Conread position:2-415
               
               
               Cow position:chr24:5141979-5141567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:3-292
               
               
               Cow position:chr24:18474693-18474999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:3-317
               
               
               Cow position:chr24:34565155-34564852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 24

               
               
               Conread position:3-318
               
               
               Cow position:chr24:39681888-39681578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-332
               
               
               Cow position:chr24:17104534-17104858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):136, 85

               
               
               Conread position:4-336
               
               
               Cow position:chr24:23556303-23556624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):226, 93

               
               
               Conread position:6-205
               
               
               Cow position:chr24:26455875-26455679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):133, 68

               
               
               Conread position:6-223
               
               
               Cow position:chr24:18357019-18357231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:7-248
               
               
               Cow position:chr24:28990593-28990358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):207, 69

               
               
               Conread position:7-277
               
               
               Cow position:chr24:19179406-19179681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 78

               
               
               Conread position:7-318
               
               
               Cow position:chr24:14746681-14746360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 165

               
               
               Conread position:7-318
               
               
               Cow position:chr24:32609679-32609361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-332
               
               
               Cow position:chr24:20874714-20874385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-333
               
               
               Cow position:chr24:3165850-3165529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-415
               
               
               Cow position:chr24:33621449-33621852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):70, 132

               
               
               Conread position:7-415
               
               
               Cow position:chr24:33944433-33944027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:8-325
               
               
               Cow position:chr24:18243436-18243749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:8-334
               
               
               Cow position:chr24:5849360-5849701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:8-334
               
               
               Cow position:chr24:34742784-34742456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:9-152
               
               
               Cow position:chr24:25752153-25752297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:9-159
               
               
               Cow position:chr24:43832558-43832409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:9-187
               
               
               Cow position:chr24:40837802-40837636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-193
               
               
               Cow position:chr24:32194542-32194361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):129, 95

               
               
               Conread position:9-196
               
               
               Cow position:chr24:37395181-37395359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:9-199
               
               
               Cow position:chr24:19736304-19736483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:9-215
               
               
               Cow position:chr24:35576509-35576705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-226
               
               
               Cow position:chr24:19000077-18999866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-227
               
               
               Cow position:chr24:16895407-16895618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-229
               
               
               Cow position:chr24:32070991-32070782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-235
               
               
               Cow position:chr24:7476323-7476541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):141, 68

               
               
               Conread position:9-235
               
               
               Cow position:chr24:16089258-16089046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-235
               
               
               Cow position:chr24:26554567-26554791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):169, 89

               
               
               Conread position:9-235
               
               
               Cow position:chr24:34008543-34008768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-240
               
               
               Cow position:chr24:10125904-10125670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-240
               
               
               Cow position:chr24:24457220-24457441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):173, 77

               
               
               Conread position:9-240
               
               
               Cow position:chr24:30897506-30897733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-241
               
               
               Cow position:chr24:5633001-5633229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:9-244
               
               
               Cow position:chr24:17832791-17833012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:9-245
               
               
               Cow position:chr24:39143642-39143409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-256
               
               
               Cow position:chr24:15373435-15373194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-262
               
               
               Cow position:chr24:16510007-16509751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):128, 62

               
               
               Conread position:9-264
               
               
               Cow position:chr24:20249866-20250127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:9-267
               
               
               Cow position:chr24:21519455-21519213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:9-268
               
               
               Cow position:chr24:34396149-34396400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:9-272
               
               
               Cow position:chr24:31036378-31036125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:9-280
               
               
               Cow position:chr24:33221910-33222179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:9-289
               
               
               Cow position:chr24:27748670-27748401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):212, 71

               
               
               Conread position:9-291
               
               
               Cow position:chr24:24755477-24755199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:9-293
               
               
               Cow position:chr24:29389261-29388994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-294
               
               
               Cow position:chr24:20943194-20942916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-302
               
               
               Cow position:chr24:41068289-41068007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):179, 5

               
               
               Conread position:9-303
               
               
               Cow position:chr24:23442551-23442843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):97, 63

               
               
               Conread position:9-307
               
               
               Cow position:chr24:17407419-17407123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:9-307
               
               
               Cow position:chr24:32124608-32124908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):140, 44

               
               
               Conread position:9-309
               
               
               Cow position:chr24:17955415-17955716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-309
               
               
               Cow position:chr24:39905426-39905730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-311
               
               
               Cow position:chr24:39483506-39483203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-317
               
               
               Cow position:chr24:16994911-16994617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:9-317
               
               
               Cow position:chr24:18970478-18970768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr24:29673552-29673243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-317
               
               
               Cow position:chr24:32369885-32370187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr24:5754866-5754564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):239, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr24:11840217-11839902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr24:26928914-26929226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr24:27340989-27341301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:9-318
               
               
               Cow position:chr24:32822741-32823059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr24:35675569-35675266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr24:41986025-41985699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-322
               
               
               Cow position:chr24:19769519-19769217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:9-323
               
               
               Cow position:chr24:7914036-7913716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:9-324
               
               
               Cow position:chr24:3152547-3152859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):45, 82

               
               
               Conread position:9-325
               
               
               Cow position:chr24:25885131-25885442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:9-326
               
               
               Cow position:chr24:18741542-18741856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-326
               
               
               Cow position:chr24:29595779-29596096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:9-326
               
               
               Cow position:chr24:43432820-43432517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-327
               
               
               Cow position:chr24:30229503-30229180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr24:18975239-18974914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:9-329
               
               
               Cow position:chr24:3430763-3430447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-330
               
               
               Cow position:chr24:33098443-33098778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-331
               
               
               Cow position:chr24:28496552-28496878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr24:3493914-3493602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr24:17311190-17311500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):211, 23

               
               
               Conread position:9-332
               
               
               Cow position:chr24:19535226-19535535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr24:20024643-20024316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-332
               
               
               Cow position:chr24:29063629-29063937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):222, 14

               
               
               Conread position:9-332
               
               
               Cow position:chr24:44987345-44987665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:9-333
               
               
               Cow position:chr24:20741353-20741030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 84

               
               
               Conread position:9-333
               
               
               Cow position:chr24:28303335-28303640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):234, 70

               
               
               Conread position:9-334
               
               
               Cow position:chr24:35150548-35150237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-338
               
               
               Cow position:chr24:8886940-8886619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:9-350
               
               
               Cow position:chr24:30544836-30545164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:9-352
               
               
               Cow position:chr24:36404112-36404457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:9-403
               
               
               Cow position:chr24:33723816-33724219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-413
               
               
               Cow position:chr24:23616726-23616331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr24:28721917-28721514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr24:32204765-32205162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:10-264
               
               
               Cow position:chr24:18771151-18771410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:10-292
               
               
               Cow position:chr24:2095853-2096140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:10-301
               
               
               Cow position:chr24:27040076-27039778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:10-310
               
               
               Cow position:chr24:24490988-24491283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:10-317
               
               
               Cow position:chr24:34533140-34532847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):129, 25

               
               
               Conread position:10-318
               
               
               Cow position:chr24:18331747-18331459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):127, 83

               
               
               Conread position:10-332
               
               
               Cow position:chr24:2675344-2675040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:10-348
               
               
               Cow position:chr24:31816607-31816276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):223, 71

               
               
               Conread position:11-151
               
               
               Cow position:chr24:27900759-27900622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-229
               
               
               Cow position:chr24:19800875-19800662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:11-246
               
               
               Cow position:chr24:27054439-27054205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-260
               
               
               Cow position:chr24:28253735-28253491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):65, 60

               
               
               Conread position:11-261
               
               
               Cow position:chr24:14617689-14617436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:11-264
               
               
               Cow position:chr24:28327053-28327306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):230, 24

               
               
               Conread position:11-277
               
               
               Cow position:chr24:31324313-31324044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-311
               
               
               Cow position:chr24:27874623-27874332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-316
               
               
               Cow position:chr24:201609-201908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:11-316
               
               
               Cow position:chr24:42344969-42345284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 105

               
               
               Conread position:11-317
               
               
               Cow position:chr24:37650702-37650394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr24:27290899-27290600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 72

               
               
               Conread position:11-318
               
               
               Cow position:chr24:35985702-35985996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-318
               
               
               Cow position:chr24:40850189-40849887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:11-326
               
               
               Cow position:chr24:28690712-28690415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):141, 14

               
               
               Conread position:11-332
               
               
               Cow position:chr24:27906466-27906137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:11-333
               
               
               Cow position:chr24:36173755-36174075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-334
               
               
               Cow position:chr24:27096717-27096391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:11-356
               
               
               Cow position:chr24:6507742-6508078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 29

               
               
               Conread position:11-356
               
               
               Cow position:chr24:39350188-39350523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):152, 44

               
               
               Conread position:11-368
               
               
               Cow position:chr24:27608070-27608423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:11-369
               
               
               Cow position:chr24:6102855-6102505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 16

               
               
               Conread position:11-388
               
               
               Cow position:chr24:28028680-28029057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 48

               
               
               Conread position:11-415
               
               
               Cow position:chr24:32054689-32054305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-416
               
               
               Cow position:chr24:30235898-30235511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:12-309
               
               
               Cow position:chr24:40091553-40091839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:12-415
               
               
               Cow position:chr24:40130156-40129746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:13-177
               
               
               Cow position:chr24:27418076-27418230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 22

               
               
               Conread position:13-264
               
               
               Cow position:chr24:21918202-21918441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:14-270
               
               
               Cow position:chr24:10841182-10841445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 79

               
               
               Conread position:14-293
               
               
               Cow position:chr24:26732475-26732195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:14-310
               
               
               Cow position:chr24:41980636-41980931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:14-367
               
               
               Cow position:chr24:17860233-17860577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:14-415
               
               
               Cow position:chr24:27844503-27844886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):228, 83

               
               
               Conread position:16-275
               
               
               Cow position:chr24:34410665-34410423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:16-318
               
               
               Cow position:chr24:39955027-39955323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):218, 63

               
               
               Conread position:16-332
               
               
               Cow position:chr24:34368983-34369297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-337
               
               
               Cow position:chr24:23685043-23685357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:17-326
               
               
               Cow position:chr24:30483926-30484228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:17-398
               
               
               Cow position:chr24:5683300-5682926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:19-241
               
               
               Cow position:chr24:12263688-12263899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:19-304
               
               
               Cow position:chr24:2970585-2970870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:19-318
               
               
               Cow position:chr24:7917341-7917644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:19-318
               
               
               Cow position:chr24:39808155-39807881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:19-332
               
               
               Cow position:chr24:814241-814556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:20-240
               
               
               Cow position:chr24:352587-352800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-317
               
               
               Cow position:chr24:29170982-29170689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:20-318
               
               
               Cow position:chr24:35074108-35073815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:20-332
               
               
               Cow position:chr24:19465898-19466224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-332
               
               
               Cow position:chr24:44040986-44041301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 55

               
               
               Conread position:21-293
               
               
               Cow position:chr24:10499233-10498956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:21-317
               
               
               Cow position:chr24:15246625-15246912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr24:27725994-27726281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:21-318
               
               
               Cow position:chr24:30314008-30314313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:21-331
               
               
               Cow position:chr24:44809269-44808953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:22-318
               
               
               Cow position:chr24:43364378-43364086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:22-415
               
               
               Cow position:chr24:2402351-2402743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:23-332
               
               
               Cow position:chr24:31159634-31159337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:23-335
               
               
               Cow position:chr24:29679294-29679606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:24-331
               
               
               Cow position:chr24:31812204-31811895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 57

               
               
               Conread position:25-415
               
               
               Cow position:chr24:28553540-28553912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:26-232
               
               
               Cow position:chr24:41423619-41423422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:26-290
               
               
               Cow position:chr24:6487932-6487671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:26-296
               
               
               Cow position:chr24:11887173-11886902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:26-409
               
               
               Cow position:chr24:15057412-15057031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-414
               
               
               Cow position:chr24:27052481-27052856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:27-317
               
               
               Cow position:chr24:29782177-29781886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:27-413
               
               
               Cow position:chr24:44054152-44054506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:29-318
               
               
               Cow position:chr24:17294180-17294464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:29-326
               
               
               Cow position:chr24:39218831-39219131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:29-415
               
               
               Cow position:chr24:42103383-42103004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):111, 5

               
               
               Conread position:30-318
               
               
               Cow position:chr24:15473367-15473078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-318
               
               
               Cow position:chr24:30178250-30177959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):62, 77

               
               
               Conread position:30-330
               
               
               Cow position:chr24:43200261-43200563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:30-332
               
               
               Cow position:chr24:6140942-6141247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:30-335
               
               
               Cow position:chr24:39159538-39159838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:31-318
               
               
               Cow position:chr24:18405304-18405581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:31-318
               
               
               Cow position:chr24:31378765-31378477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:32-317
               
               
               Cow position:chr24:250571-250845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):153, 50

               
               
               Conread position:32-328
               
               
               Cow position:chr24:16625479-16625788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):107, 70

               
               
               Conread position:32-332
               
               
               Cow position:chr24:35794728-35795032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 61

               
               
               Conread position:35-200
               
               
               Cow position:chr24:18313937-18314104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:35-333
               
               
               Cow position:chr24:27633416-27633121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:37-418
               
               
               Cow position:chr24:24250733-24250355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:38-202
               
               
               Cow position:chr24:7777620-7777773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:38-237
               
               
               Cow position:chr24:34782785-34782979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-296
               
               
               Cow position:chr24:6450503-6450259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:38-332
               
               
               Cow position:chr24:18266161-18266463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:38-413
               
               
               Cow position:chr24:6160088-6160448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:38-415
               
               
               Cow position:chr24:43635439-43635064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:39-316
               
               
               Cow position:chr24:15861598-15861876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):100, 56

               
               
               Conread position:40-245
               
               
               Cow position:chr24:6131870-6132072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:42-293
               
               
               Cow position:chr24:28354152-28353899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:43-332
               
               
               Cow position:chr24:42007736-42007455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:43-335
               
               
               Cow position:chr24:36554837-36555122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:44-232
               
               
               Cow position:chr24:27202595-27202410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:44-332
               
               
               Cow position:chr24:34315351-34315067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:46-241
               
               
               Cow position:chr24:885695-885879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:47-277
               
               
               Cow position:chr24:18695611-18695385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-368
               
               
               Cow position:chr24:40184616-40184294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:48-236
               
               
               Cow position:chr24:30226933-30226749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:51-290
               
               
               Cow position:chr24:27149387-27149148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:51-314
               
               
               Cow position:chr24:21860234-21860493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:52-318
               
               
               Cow position:chr24:27968071-27967803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 55

               
               
               Conread position:55-245
               
               
               Cow position:chr24:29707810-29708004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:55-309
               
               
               Cow position:chr24:5152220-5151967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:55-318
               
               
               Cow position:chr24:6154796-6154547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:55-344
               
               
               Cow position:chr24:39259145-39258861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 24

               
               
               Conread position:55-350
               
               
               Cow position:chr24:32758772-32759079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:55-415
               
               
               Cow position:chr24:24136877-24137226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:57-290
               
               
               Cow position:chr24:27824444-27824215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:57-327
               
               
               Cow position:chr24:29028023-29027763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:58-247
               
               
               Cow position:chr24:40984144-40983962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:58-315
               
               
               Cow position:chr24:18390311-18390562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:59-293
               
               
               Cow position:chr24:27207215-27207447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:63-315
               
               
               Cow position:chr24:17363672-17363919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 16

               
               
               Conread position:64-350
               
               
               Cow position:chr24:22433613-22433321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:65-332
               
               
               Cow position:chr24:6913789-6914055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:68-326
               
               
               Cow position:chr24:6160874-6161132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:71-332
               
               
               Cow position:chr24:18734380-18734651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:79-311
               
               
               Cow position:chr24:12993024-12992785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:79-415
               
               
               Cow position:chr24:19658526-19658181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):35, 272

               
               
               Conread position:80-315
               
               
               Cow position:chr24:591879-591636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:83-328
               
               
               Cow position:chr24:16556677-16556922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:84-325
               
               
               Cow position:chr24:11876847-11876599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:84-332
               
               
               Cow position:chr24:33153736-33153491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr24:39440591-39440849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:87-318
               
               
               Cow position:chr24:21768605-21768365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:87-332
               
               
               Cow position:chr24:39493253-39493005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:87-415
               
               
               Cow position:chr24:6340970-6340651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:88-318
               
               
               Cow position:chr24:6900781-6900547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:89-316
               
               
               Cow position:chr24:43733928-43733694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:89-318
               
               
               Cow position:chr24:1269749-1269527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:89-328
               
               
               Cow position:chr24:37204921-37205167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:91-318
               
               
               Cow position:chr24:40301114-40300878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:91-333
               
               
               Cow position:chr24:27270739-27270502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 138

               
               
               Conread position:92-318
               
               
               Cow position:chr24:38347639-38347402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-359
               
               
               Cow position:chr24:27941054-27941325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:92-415
               
               
               Cow position:chr24:36486106-36486430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:93-364
               
               
               Cow position:chr24:25991209-25991468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:93-367
               
               
               Cow position:chr24:44702928-44702652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:95-332
               
               
               Cow position:chr24:40908973-40908725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 170

               
               
               Conread position:96-277
               
               
               Cow position:chr24:25194220-25194030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:96-315
               
               
               Cow position:chr24:33569488-33569710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:96-318
               
               
               Cow position:chr24:20969850-20970069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:96-330
               
               
               Cow position:chr24:28062901-28062656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:96-334
               
               
               Cow position:chr24:27810137-27809888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:97-235
               
               
               Cow position:chr24:42825545-42825684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:98-333
               
               
               Cow position:chr24:25677986-25677742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:98-350
               
               
               Cow position:chr24:39742775-39742516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:100-291
               
               
               Cow position:chr24:21264564-21264761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:100-365
               
               
               Cow position:chr24:23694947-23695219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:101-326
               
               
               Cow position:chr24:27267579-27267350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 226

               
               
               Conread position:104-415
               
               
               Cow position:chr24:14279834-14279521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:105-236
               
               
               Cow position:chr24:5755-5889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-332
               
               
               Cow position:chr24:7301402-7301165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 203

               
               
               Conread position:106-316
               
               
               Cow position:chr24:25229117-25229332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:106-318
               
               
               Cow position:chr24:18025029-18025248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:106-318
               
               
               Cow position:chr24:25424997-25424786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:106-318
               
               
               Cow position:chr24:27719815-27720029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:106-330
               
               
               Cow position:chr24:30900289-30900516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:106-332
               
               
               Cow position:chr24:29180828-29180610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:106-415
               
               
               Cow position:chr24:20862017-20862327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:107-266
               
               
               Cow position:chr24:31359263-31359097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:107-318
               
               
               Cow position:chr24:27543538-27543753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:108-415
               
               
               Cow position:chr24:3631447-3631151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:109-324
               
               
               Cow position:chr24:18324559-18324331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:113-293
               
               
               Cow position:chr24:30776732-30776920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:114-315
               
               
               Cow position:chr24:35529852-35529649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:114-326
               
               
               Cow position:chr24:7001134-7001354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:115-318
               
               
               Cow position:chr24:11007151-11006938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:115-415
               
               
               Cow position:chr24:33238611-33238915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:117-332
               
               
               Cow position:chr24:25320925-25320698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:117-333
               
               
               Cow position:chr24:38375214-38374993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 178

               
               
               Conread position:123-333
               
               
               Cow position:chr24:27465654-27465864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:124-360
               
               
               Cow position:chr24:2730651-2730889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:127-318
               
               
               Cow position:chr24:18732205-18732400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:128-331
               
               
               Cow position:chr24:20923504-20923307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:128-415
               
               
               Cow position:chr24:29606152-29606433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:131-339
               
               
               Cow position:chr24:28600699-28600905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 96

               
               
               Conread position:137-333
               
               
               Cow position:chr24:17763351-17763543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:138-415
               
               
               Cow position:chr24:16267685-16267410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:143-318
               
               
               Cow position:chr24:6957080-6956899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 64

               
               
               Conread position:152-332
               
               
               Cow position:chr24:22193624-22193434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:152-364
               
               
               Cow position:chr24:39607661-39607877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:152-415
               
               
               Cow position:chr24:28689599-28689342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:158-318
               
               
               Cow position:chr24:40974887-40974731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:158-332
               
               
               Cow position:chr24:19804578-19804396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:182-332
               
               
               Cow position:chr24:24854518-24854368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:192-333
               
               
               Cow position:chr24:28289576-28289720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:219-355
               
               
               Cow position:chr24:27629914-27630052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:1-218
               
               
               Cow position:chr25:15634407-15634629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:1-240
               
               
               Cow position:chr25:17342520-17342280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-240
               
               
               Cow position:chr25:26259426-26259664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:1-288
               
               
               Cow position:chr25:61712-61432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:1-309
               
               
               Cow position:chr25:16921735-16922040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:1-311
               
               
               Cow position:chr25:12293685-12293999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:1-327
               
               
               Cow position:chr25:17566649-17566323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:1-335
               
               
               Cow position:chr25:36081937-36081603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:1-362
               
               
               Cow position:chr25:24452099-24452467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:2-269
               
               
               Cow position:chr25:17144487-17144226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:3-318
               
               
               Cow position:chr25:11666706-11666401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:3-338
               
               
               Cow position:chr25:5836899-5837241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 97

               
               
               Conread position:3-415
               
               
               Cow position:chr25:17658669-17658271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:4-331
               
               
               Cow position:chr25:18075721-18075401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:6-318
               
               
               Cow position:chr25:6885916-6886232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):131, 81

               
               
               Conread position:7-264
               
               
               Cow position:chr25:22178970-22178720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:7-294
               
               
               Cow position:chr25:10217995-10218282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-296
               
               
               Cow position:chr25:9642412-9642121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 72

               
               
               Conread position:7-304
               
               
               Cow position:chr25:12840664-12840958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:7-318
               
               
               Cow position:chr25:10407360-10407673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:7-318
               
               
               Cow position:chr25:12116945-12117241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:7-318
               
               
               Cow position:chr25:33256407-33256114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):183, 46

               
               
               Conread position:7-344
               
               
               Cow position:chr25:40321234-40321573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:7-348
               
               
               Cow position:chr25:33978164-33978486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 25

               
               
               Conread position:7-362
               
               
               Cow position:chr25:27534864-27535205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:7-413
               
               
               Cow position:chr25:21951184-21950784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:7-415
               
               
               Cow position:chr25:11436753-11437146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):89, 72

               
               
               Conread position:8-330
               
               
               Cow position:chr25:10643256-10643578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):173, 81

               
               
               Conread position:8-339
               
               
               Cow position:chr25:33260785-33260464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):181, 93

               
               
               Conread position:9-178
               
               
               Cow position:chr25:12252757-12252923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-179
               
               
               Cow position:chr25:30816941-30816774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):127, 83

               
               
               Conread position:9-180
               
               
               Cow position:chr25:1824045-1824208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-196
               
               
               Cow position:chr25:3373330-3373501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-200
               
               
               Cow position:chr25:14157677-14157489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 67

               
               
               Conread position:9-203
               
               
               Cow position:chr25:20664230-20664433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-213
               
               
               Cow position:chr25:22730882-22730687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:9-217
               
               
               Cow position:chr25:6687997-6687800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:9-219
               
               
               Cow position:chr25:30619115-30618914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-229
               
               
               Cow position:chr25:8961822-8961612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:9-232
               
               
               Cow position:chr25:5920996-5920773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:9-233
               
               
               Cow position:chr25:26679278-26679062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-235
               
               
               Cow position:chr25:18905937-18905717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-236
               
               
               Cow position:chr25:19317317-19317093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-240
               
               
               Cow position:chr25:15440725-15440953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:9-240
               
               
               Cow position:chr25:25861298-25861529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:9-241
               
               
               Cow position:chr25:21893390-21893163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-246
               
               
               Cow position:chr25:22750955-22751192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):126, 81

               
               
               Conread position:9-261
               
               
               Cow position:chr25:13387860-13387614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:9-263
               
               
               Cow position:chr25:20133262-20133515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-264
               
               
               Cow position:chr25:13272621-13272368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-264
               
               
               Cow position:chr25:16714217-16714475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:9-264
               
               
               Cow position:chr25:17704796-17704548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):176, 79

               
               
               Conread position:9-277
               
               
               Cow position:chr25:40904778-40905041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:9-279
               
               
               Cow position:chr25:26089761-26090028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):103, 58

               
               
               Conread position:9-293
               
               
               Cow position:chr25:13380549-13380846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:9-293
               
               
               Cow position:chr25:30279156-30279437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):224, 70

               
               
               Conread position:9-300
               
               
               Cow position:chr25:38425413-38425128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-304
               
               
               Cow position:chr25:21289398-21289099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:9-307
               
               
               Cow position:chr25:18988442-18988132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:9-311
               
               
               Cow position:chr25:9056231-9055949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:9-311
               
               
               Cow position:chr25:20019951-20020235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):173, 20

               
               
               Conread position:9-316
               
               
               Cow position:chr25:16319088-16319385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):222, 82

               
               
               Conread position:9-316
               
               
               Cow position:chr25:19679407-19679089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):82, 162

               
               
               Conread position:9-317
               
               
               Cow position:chr25:15377378-15377079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:9-317
               
               
               Cow position:chr25:29215344-29215640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr25:17975326-17975622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):210, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr25:20496583-20496285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr25:23917893-23917587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr25:28187893-28188203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr25:33550561-33550251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-319
               
               
               Cow position:chr25:5846757-5847062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-326
               
               
               Cow position:chr25:6683010-6683324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-326
               
               
               Cow position:chr25:7216876-7216565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-326
               
               
               Cow position:chr25:16064944-16064634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:9-329
               
               
               Cow position:chr25:33691610-33691288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 29

               
               
               Conread position:9-331
               
               
               Cow position:chr25:1838293-1837972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:9-331
               
               
               Cow position:chr25:21024152-21024484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:9-331
               
               
               Cow position:chr25:25051326-25051652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr25:21245552-21245875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr25:36762157-36761837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):180, 70

               
               
               Conread position:9-333
               
               
               Cow position:chr25:7641399-7641723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:9-333
               
               
               Cow position:chr25:26087571-26087245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:9-333
               
               
               Cow position:chr25:26224977-26225309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-334
               
               
               Cow position:chr25:20076549-20076223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-334
               
               
               Cow position:chr25:22909804-22910115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:9-335
               
               
               Cow position:chr25:12260837-12261166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):134, 102

               
               
               Conread position:9-336
               
               
               Cow position:chr25:20785534-20785854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:9-343
               
               
               Cow position:chr25:6474035-6474379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 173

               
               
               Conread position:9-362
               
               
               Cow position:chr25:35612261-35612600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 68

               
               
               Conread position:9-363
               
               
               Cow position:chr25:11131636-11131285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:9-368
               
               
               Cow position:chr25:12081270-12081620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-397
               
               
               Cow position:chr25:24669392-24669764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-398
               
               
               Cow position:chr25:18564538-18564168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:9-412
               
               
               Cow position:chr25:22531333-22530946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):216, 47

               
               
               Conread position:9-413
               
               
               Cow position:chr25:25753944-25754337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-415
               
               
               Cow position:chr25:3145896-3145502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:9-415
               
               
               Cow position:chr25:9349231-9349601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:9-415
               
               
               Cow position:chr25:11585570-11585169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-415
               
               
               Cow position:chr25:20402657-20403063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr25:33959200-33959603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr25:37594458-37594054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-435
               
               
               Cow position:chr25:36036727-36037153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:10-318
               
               
               Cow position:chr25:788310-788014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:10-318
               
               
               Cow position:chr25:7581380-7581682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 73

               
               
               Conread position:10-415
               
               
               Cow position:chr25:20008184-20007777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:11-200
               
               
               Cow position:chr25:18201879-18202059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:11-264
               
               
               Cow position:chr25:17914830-17914579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:11-268
               
               
               Cow position:chr25:8157454-8157715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:11-296
               
               
               Cow position:chr25:14570424-14570136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:11-316
               
               
               Cow position:chr25:18266214-18265911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:11-316
               
               
               Cow position:chr25:19129905-19129601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:11-317
               
               
               Cow position:chr25:33663855-33664150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr25:11661768-11662074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:11-318
               
               
               Cow position:chr25:18294264-18294569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-324
               
               
               Cow position:chr25:40956934-40957247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-327
               
               
               Cow position:chr25:18161337-18161039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:11-332
               
               
               Cow position:chr25:16867288-16866963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:11-332
               
               
               Cow position:chr25:20348919-20348589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:11-332
               
               
               Cow position:chr25:21191539-21191218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-335
               
               
               Cow position:chr25:36535383-36535704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:11-337
               
               
               Cow position:chr25:14196913-14196581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:11-341
               
               
               Cow position:chr25:8512037-8512369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 59

               
               
               Conread position:11-352
               
               
               Cow position:chr25:9754046-9754364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:11-361
               
               
               Cow position:chr25:5407792-5407451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-362
               
               
               Cow position:chr25:24405683-24406039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:13-318
               
               
               Cow position:chr25:6463981-6464284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:14-247
               
               
               Cow position:chr25:26134089-26133858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:14-264
               
               
               Cow position:chr25:34768685-34768921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:14-296
               
               
               Cow position:chr25:21894837-21895119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:14-307
               
               
               Cow position:chr25:1735274-1735560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:14-336
               
               
               Cow position:chr25:9956991-9957305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-340
               
               
               Cow position:chr25:38135797-38135470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:15-310
               
               
               Cow position:chr25:23410710-23410416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 22

               
               
               Conread position:15-332
               
               
               Cow position:chr25:22203643-22203959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:15-348
               
               
               Cow position:chr25:8226149-8225812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:16-305
               
               
               Cow position:chr25:8576739-8576451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:18-305
               
               
               Cow position:chr25:8560912-8560627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:19-200
               
               
               Cow position:chr25:34379063-34379238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:19-315
               
               
               Cow position:chr25:18293794-18293505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:20-232
               
               
               Cow position:chr25:24651412-24651617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-235
               
               
               Cow position:chr25:13672436-13672224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:20-240
               
               
               Cow position:chr25:26457636-26457853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-291
               
               
               Cow position:chr25:12239106-12239376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:21-166
               
               
               Cow position:chr25:30450085-30449943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):115, 72

               
               
               Conread position:21-229
               
               
               Cow position:chr25:9002712-9002513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:21-293
               
               
               Cow position:chr25:6961113-6961380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:21-318
               
               
               Cow position:chr25:8120823-8120522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:21-318
               
               
               Cow position:chr25:35347943-35347650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:21-332
               
               
               Cow position:chr25:21192890-21193212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:21-334
               
               
               Cow position:chr25:20023346-20023668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:21-334
               
               
               Cow position:chr25:34669284-34668972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):160, 53

               
               
               Conread position:22-214
               
               
               Cow position:chr25:12997632-12997445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:23-240
               
               
               Cow position:chr25:16555804-16555589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:26-290
               
               
               Cow position:chr25:12319308-12319566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:26-303
               
               
               Cow position:chr25:34169982-34169713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):213, 74

               
               
               Conread position:26-318
               
               
               Cow position:chr25:26701065-26700785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 62

               
               
               Conread position:26-330
               
               
               Cow position:chr25:14791792-14791484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:27-240
               
               
               Cow position:chr25:36779535-36779323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):112, 73

               
               
               Conread position:29-415
               
               
               Cow position:chr25:25827503-25827117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:30-240
               
               
               Cow position:chr25:27532636-27532846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:30-250
               
               
               Cow position:chr25:11315939-11315724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:30-278
               
               
               Cow position:chr25:38982129-38981895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-311
               
               
               Cow position:chr25:10504306-10504584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):201, 63

               
               
               Conread position:30-326
               
               
               Cow position:chr25:24573099-24572810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):193, 49

               
               
               Conread position:30-334
               
               
               Cow position:chr25:15319951-15319650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):198, 68

               
               
               Conread position:30-415
               
               
               Cow position:chr25:20069752-20069380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:30-415
               
               
               Cow position:chr25:26654942-26654564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:31-316
               
               
               Cow position:chr25:9023663-9023392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:31-318
               
               
               Cow position:chr25:24136406-24136690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:31-318
               
               
               Cow position:chr25:31230209-31230478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:31-332
               
               
               Cow position:chr25:5539452-5539153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):157, 48

               
               
               Conread position:35-245
               
               
               Cow position:chr25:18894693-18894896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:35-310
               
               
               Cow position:chr25:12234735-12235005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:35-318
               
               
               Cow position:chr25:9269374-9269118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:37-414
               
               
               Cow position:chr25:9396469-9396112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):152, 48

               
               
               Conread position:38-258
               
               
               Cow position:chr25:12755464-12755686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-264
               
               
               Cow position:chr25:26269914-26270135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:39-225
               
               
               Cow position:chr25:31732314-31732492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):100, 52

               
               
               Conread position:39-240
               
               
               Cow position:chr25:31705025-31704820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:39-245
               
               
               Cow position:chr25:36017564-36017361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:39-259
               
               
               Cow position:chr25:21042408-21042191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:39-318
               
               
               Cow position:chr25:31732712-31732991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):100, 52

               
               
               Conread position:40-311
               
               
               Cow position:chr25:20211059-20211334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:40-415
               
               
               Cow position:chr25:13333456-13333079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:43-328
               
               
               Cow position:chr25:5791782-5792071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:44-201
               
               
               Cow position:chr25:7299196-7299353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:44-231
               
               
               Cow position:chr25:6121752-6121931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:44-293
               
               
               Cow position:chr25:11054921-11054690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:45-237
               
               
               Cow position:chr25:36124701-36124508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:47-210
               
               
               Cow position:chr25:32587864-32588022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:47-316
               
               
               Cow position:chr25:4002816-4002543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:47-318
               
               
               Cow position:chr25:5515028-5514752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 54

               
               
               Conread position:47-415
               
               
               Cow position:chr25:12824003-12824373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:51-330
               
               
               Cow position:chr25:6424575-6424852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:52-318
               
               
               Cow position:chr25:10138103-10137843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):181, 41

               
               
               Conread position:52-347
               
               
               Cow position:chr25:35345040-35344754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:55-256
               
               
               Cow position:chr25:3983046-3982851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:55-318
               
               
               Cow position:chr25:8918270-8918533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):175, 42

               
               
               Conread position:56-174
               
               
               Cow position:chr25:12691673-12691790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:56-269
               
               
               Cow position:chr25:14945445-14945648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:56-354
               
               
               Cow position:chr25:35333164-35332882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:57-318
               
               
               Cow position:chr25:448333-448600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:57-326
               
               
               Cow position:chr25:14224799-14225058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:58-307
               
               
               Cow position:chr25:2136362-2136108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:58-316
               
               
               Cow position:chr25:16001522-16001774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:62-332
               
               
               Cow position:chr25:12204475-12204201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:63-293
               
               
               Cow position:chr25:7329547-7329314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:64-309
               
               
               Cow position:chr25:15694979-15694737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:66-328
               
               
               Cow position:chr25:22297018-22297282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:71-279
               
               
               Cow position:chr25:11978709-11978915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:73-318
               
               
               Cow position:chr25:7306293-7306043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:74-307
               
               
               Cow position:chr25:30035541-30035304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:75-362
               
               
               Cow position:chr25:18453125-18452825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:79-329
               
               
               Cow position:chr25:26058575-26058319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:80-318
               
               
               Cow position:chr25:6891536-6891775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:80-373
               
               
               Cow position:chr25:10012059-10012359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:82-333
               
               
               Cow position:chr25:12817358-12817103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:83-293
               
               
               Cow position:chr25:36033422-36033206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:84-279
               
               
               Cow position:chr25:2624791-2624588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):146, 56

               
               
               Conread position:84-312
               
               
               Cow position:chr25:24008188-24008426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:84-332
               
               
               Cow position:chr25:7801122-7800867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr25:8347492-8347240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-415
               
               
               Cow position:chr25:26757423-26757087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:85-318
               
               
               Cow position:chr25:15254355-15254586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:85-326
               
               
               Cow position:chr25:35340310-35340069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):144, 54

               
               
               Conread position:86-318
               
               
               Cow position:chr25:23389299-23389532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:87-305
               
               
               Cow position:chr25:22369373-22369151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:87-318
               
               
               Cow position:chr25:1096549-1096322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:89-368
               
               
               Cow position:chr25:10448733-10449004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:92-217
               
               
               Cow position:chr25:22332740-22332612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-318
               
               
               Cow position:chr25:13642335-13642571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:93-332
               
               
               Cow position:chr25:30319469-30319718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:93-348
               
               
               Cow position:chr25:35625208-35625456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:94-316
               
               
               Cow position:chr25:395326-395102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:95-318
               
               
               Cow position:chr25:13569197-13569422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:95-325
               
               
               Cow position:chr25:32191643-32191409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 55

               
               
               Conread position:96-235
               
               
               Cow position:chr25:23323177-23323038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 117

               
               
               Conread position:97-316
               
               
               Cow position:chr25:10365781-10366005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:98-316
               
               
               Cow position:chr25:14467109-14467335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 188

               
               
               Conread position:99-415
               
               
               Cow position:chr25:33839348-33839044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:100-317
               
               
               Cow position:chr25:17354344-17354128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:100-332
               
               
               Cow position:chr25:9634874-9634651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:100-415
               
               
               Cow position:chr25:2111036-2110740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:101-235
               
               
               Cow position:chr25:26938265-26938396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:101-318
               
               
               Cow position:chr25:9961203-9961433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:103-296
               
               
               Cow position:chr25:6255971-6256171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:104-317
               
               
               Cow position:chr25:36026973-36026753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:104-318
               
               
               Cow position:chr25:27821382-27821156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:105-256
               
               
               Cow position:chr25:12520997-12521154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:105-311
               
               
               Cow position:chr25:20085247-20085039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:106-240
               
               
               Cow position:chr25:35110163-35110299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-316
               
               
               Cow position:chr25:16400300-16400503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:106-317
               
               
               Cow position:chr25:2194905-2194693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:108-357
               
               
               Cow position:chr25:9990138-9990385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:122-296
               
               
               Cow position:chr25:10746844-10746667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:126-318
               
               
               Cow position:chr25:6003049-6003246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:127-279
               
               
               Cow position:chr25:2596127-2595962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-318
               
               
               Cow position:chr25:20060085-20060286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:127-318
               
               
               Cow position:chr25:25948457-25948650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:128-318
               
               
               Cow position:chr25:12195387-12195580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:128-318
               
               
               Cow position:chr25:17712477-17712279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:128-318
               
               
               Cow position:chr25:18448778-18448582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:128-415
               
               
               Cow position:chr25:26238811-26238525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):13, 203

               
               
               Conread position:138-328
               
               
               Cow position:chr25:21266939-21266741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:143-296
               
               
               Cow position:chr25:16316818-16316664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:150-368
               
               
               Cow position:chr25:40407553-40407774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:152-334
               
               
               Cow position:chr25:18934957-18935146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:156-331
               
               
               Cow position:chr25:11829990-11830164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:159-311
               
               
               Cow position:chr25:14266595-14266750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:171-318
               
               
               Cow position:chr25:13566745-13566590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 134

               
               
               Conread position:173-348
               
               
               Cow position:chr25:25866818-25866646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:179-414
               
               
               Cow position:chr25:13720651-13720883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:1-279
               
               
               Cow position:chr26:20013557-20013282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):138, 87

               
               
               Conread position:1-318
               
               
               Cow position:chr26:6475348-6475663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 78

               
               
               Conread position:1-327
               
               
               Cow position:chr26:33160423-33160742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):138, 67

               
               
               Conread position:1-344
               
               
               Cow position:chr26:17289282-17288944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:1-346
               
               
               Cow position:chr26:2769762-2770100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:1-412
               
               
               Cow position:chr26:4585132-4585534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:1-415
               
               
               Cow position:chr26:613592-614015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:3-229
               
               
               Cow position:chr26:12964620-12964839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:3-311
               
               
               Cow position:chr26:17204067-17204367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):246, 90

               
               
               Conread position:3-318
               
               
               Cow position:chr26:12069692-12069388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 51

               
               
               Conread position:4-237
               
               
               Cow position:chr26:16510866-16510635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 75

               
               
               Conread position:4-317
               
               
               Cow position:chr26:9632287-9632604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:5-364
               
               
               Cow position:chr26:22623064-22622696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):161, 65

               
               
               Conread position:7-241
               
               
               Cow position:chr26:3019344-3019580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:7-279
               
               
               Cow position:chr26:10747561-10747809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-306
               
               
               Cow position:chr26:26766-27052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr26:25394112-25393794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:7-325
               
               
               Cow position:chr26:20129603-20129919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:7-332
               
               
               Cow position:chr26:34847817-34847493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-340
               
               
               Cow position:chr26:14080780-14080459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):290, 96

               
               
               Conread position:7-356
               
               
               Cow position:chr26:12216926-12216579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:7-415
               
               
               Cow position:chr26:8353042-8352634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 168

               
               
               Conread position:8-317
               
               
               Cow position:chr26:17057751-17057448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:8-328
               
               
               Cow position:chr26:2609733-2610046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 65

               
               
               Conread position:8-414
               
               
               Cow position:chr26:9604634-9604218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):131, 84

               
               
               Conread position:9-177
               
               
               Cow position:chr26:6865095-6864925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:9-187
               
               
               Cow position:chr26:4807625-4807461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:9-187
               
               
               Cow position:chr26:6486580-6486755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-201
               
               
               Cow position:chr26:12237958-12238137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:9-204
               
               
               Cow position:chr26:12893356-12893539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-219
               
               
               Cow position:chr26:33253245-33253452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-221
               
               
               Cow position:chr26:32834508-32834709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-222
               
               
               Cow position:chr26:14905737-14905946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-227
               
               
               Cow position:chr26:31633799-31633585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-231
               
               
               Cow position:chr26:16179633-16179418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-232
               
               
               Cow position:chr26:22348943-22349158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:9-236
               
               
               Cow position:chr26:2739384-2739606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:9-236
               
               
               Cow position:chr26:31903238-31903014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:9-240
               
               
               Cow position:chr26:22249406-22249632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-240
               
               
               Cow position:chr26:23582874-23583100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:9-245
               
               
               Cow position:chr26:23315845-23315612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:9-259
               
               
               Cow position:chr26:22354484-22354236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-259
               
               
               Cow position:chr26:30568592-30568833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:9-260
               
               
               Cow position:chr26:829876-829630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):219, 91

               
               
               Conread position:9-260
               
               
               Cow position:chr26:10974201-10973937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:9-260
               
               
               Cow position:chr26:34060404-34060155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-264
               
               
               Cow position:chr26:14175353-14175099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):127, 68

               
               
               Conread position:9-290
               
               
               Cow position:chr26:15211874-15211607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-291
               
               
               Cow position:chr26:25526320-25526037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-293
               
               
               Cow position:chr26:21636966-21637248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):219, 69

               
               
               Conread position:9-293
               
               
               Cow position:chr26:23142033-23142309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 98

               
               
               Conread position:9-303
               
               
               Cow position:chr26:6005983-6006267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):211, 79

               
               
               Conread position:9-305
               
               
               Cow position:chr26:15200445-15200739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:9-307
               
               
               Cow position:chr26:31856780-31856480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):111, 81

               
               
               Conread position:9-310
               
               
               Cow position:chr26:19774228-19774531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-314
               
               
               Cow position:chr26:4854616-4854305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):130, 99

               
               
               Conread position:9-318
               
               
               Cow position:chr26:3706863-3706564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr26:9104210-9104517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr26:14174371-14174060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr26:21912871-21912552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr26:32601421-32601115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr26:35704459-35704149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:9-324
               
               
               Cow position:chr26:23599725-23600034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:9-326
               
               
               Cow position:chr26:20260652-20260346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:9-328
               
               
               Cow position:chr26:13802182-13801865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:9-328
               
               
               Cow position:chr26:33745988-33745667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:9-330
               
               
               Cow position:chr26:5246407-5246736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-330
               
               
               Cow position:chr26:33096487-33096813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-332
               
               
               Cow position:chr26:4363371-4363055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):171, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr26:7642502-7642827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):172, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr26:11134619-11134946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:9-332
               
               
               Cow position:chr26:16550055-16549730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-333
               
               
               Cow position:chr26:3071904-3072214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-335
               
               
               Cow position:chr26:818393-818717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-340
               
               
               Cow position:chr26:33744975-33744633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):68, 319

               
               
               Conread position:9-344
               
               
               Cow position:chr26:26294125-26294450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-352
               
               
               Cow position:chr26:6794216-6793873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):172, 84

               
               
               Conread position:9-397
               
               
               Cow position:chr26:21859895-21859511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):153, 84

               
               
               Conread position:9-405
               
               
               Cow position:chr26:27163521-27163126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-412
               
               
               Cow position:chr26:13021074-13021472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr26:32553758-32553356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:10-293
               
               
               Cow position:chr26:8745756-8746043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:10-331
               
               
               Cow position:chr26:12155054-12155360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:10-331
               
               
               Cow position:chr26:17427866-17428188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:10-415
               
               
               Cow position:chr26:6714232-6714608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:11-215
               
               
               Cow position:chr26:22152296-22152096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-226
               
               
               Cow position:chr26:33074428-33074639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):179, 61

               
               
               Conread position:11-240
               
               
               Cow position:chr26:16604356-16604134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:11-268
               
               
               Cow position:chr26:35449132-35448877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:11-276
               
               
               Cow position:chr26:19110983-19110708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:11-290
               
               
               Cow position:chr26:31605475-31605199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-290
               
               
               Cow position:chr26:33566975-33567251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:11-309
               
               
               Cow position:chr26:21992171-21991885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-315
               
               
               Cow position:chr26:1587654-1587371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):128, 47

               
               
               Conread position:11-317
               
               
               Cow position:chr26:19459762-19459437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):94, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr26:4598738-4599047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr26:7148236-7148534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):127, 61

               
               
               Conread position:11-318
               
               
               Cow position:chr26:8811196-8810896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr26:26466663-26466954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):230, 24

               
               
               Conread position:11-318
               
               
               Cow position:chr26:29333162-29332864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:11-318
               
               
               Cow position:chr26:32058716-32058417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):217, 26

               
               
               Conread position:11-318
               
               
               Cow position:chr26:32897800-32898107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:11-318
               
               
               Cow position:chr26:34108827-34108535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:11-326
               
               
               Cow position:chr26:18918003-18918314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:11-326
               
               
               Cow position:chr26:34314760-34314433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 66

               
               
               Conread position:11-332
               
               
               Cow position:chr26:12145049-12145353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-338
               
               
               Cow position:chr26:798229-798554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:11-362
               
               
               Cow position:chr26:14924551-14924219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:11-414
               
               
               Cow position:chr26:16783895-16783488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:12-240
               
               
               Cow position:chr26:11270303-11270094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:12-318
               
               
               Cow position:chr26:32652666-32652959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):227, 69

               
               
               Conread position:14-193
               
               
               Cow position:chr26:6470211-6470380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:14-217
               
               
               Cow position:chr26:7315043-7315233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:14-235
               
               
               Cow position:chr26:33857128-33857342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:14-254
               
               
               Cow position:chr26:586813-587039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:14-261
               
               
               Cow position:chr26:10965528-10965754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):200, 79

               
               
               Conread position:14-324
               
               
               Cow position:chr26:23097118-23097420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:14-326
               
               
               Cow position:chr26:20256897-20256602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):167, 73

               
               
               Conread position:14-335
               
               
               Cow position:chr26:33045147-33044828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:14-364
               
               
               Cow position:chr26:16922004-16921657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 65

               
               
               Conread position:15-235
               
               
               Cow position:chr26:14578392-14578177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):124, 64

               
               
               Conread position:16-232
               
               
               Cow position:chr26:12520092-12519872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:16-293
               
               
               Cow position:chr26:32865829-32866099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:16-335
               
               
               Cow position:chr26:29353443-29353765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:17-317
               
               
               Cow position:chr26:19648983-19648690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:17-415
               
               
               Cow position:chr26:17401826-17401438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):164, 69

               
               
               Conread position:19-275
               
               
               Cow position:chr26:22892385-22892633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):188, 6

               
               
               Conread position:21-327
               
               
               Cow position:chr26:26888074-26888379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):212, 66

               
               
               Conread position:22-304
               
               
               Cow position:chr26:30254575-30254856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:22-314
               
               
               Cow position:chr26:5360921-5361188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:22-318
               
               
               Cow position:chr26:16166857-16167149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):165, 57

               
               
               Conread position:23-240
               
               
               Cow position:chr26:30605300-30605517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:23-273
               
               
               Cow position:chr26:32672380-32672631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:23-275
               
               
               Cow position:chr26:19446190-19445944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:23-415
               
               
               Cow position:chr26:8699990-8700375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:24-317
               
               
               Cow position:chr26:32670439-32670725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):209, 62

               
               
               Conread position:25-294
               
               
               Cow position:chr26:5307198-5306920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:25-335
               
               
               Cow position:chr26:6188359-6188043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:26-296
               
               
               Cow position:chr26:23000983-23001259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:26-318
               
               
               Cow position:chr26:32013687-32013394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:26-330
               
               
               Cow position:chr26:27491444-27491752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:29-278
               
               
               Cow position:chr26:8642999-8642762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:29-311
               
               
               Cow position:chr26:21243153-21242875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:30-264
               
               
               Cow position:chr26:6724155-6723922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-311
               
               
               Cow position:chr26:11263693-11263408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:30-316
               
               
               Cow position:chr26:32776456-32776740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:30-318
               
               
               Cow position:chr26:2531132-2531411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-337
               
               
               Cow position:chr26:20846674-20846368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:31-311
               
               
               Cow position:chr26:9666358-9666636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:31-326
               
               
               Cow position:chr26:3181890-3182193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:33-333
               
               
               Cow position:chr26:3726431-3726134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:34-415
               
               
               Cow position:chr26:18692467-18692104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:35-318
               
               
               Cow position:chr26:10767867-10768136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:38-316
               
               
               Cow position:chr26:31779524-31779240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:38-342
               
               
               Cow position:chr26:2345607-2345904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:40-318
               
               
               Cow position:chr26:13705957-13706233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:40-318
               
               
               Cow position:chr26:24280866-24280593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:44-314
               
               
               Cow position:chr26:32688472-32688197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:45-221
               
               
               Cow position:chr26:8819821-8819998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:46-263
               
               
               Cow position:chr26:27761622-27761830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:47-318
               
               
               Cow position:chr26:6447564-6447843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:51-318
               
               
               Cow position:chr26:16796200-16796468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:52-305
               
               
               Cow position:chr26:28243595-28243842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:52-318
               
               
               Cow position:chr26:9850069-9850329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:52-318
               
               
               Cow position:chr26:9853579-9853839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:55-316
               
               
               Cow position:chr26:23925960-23926212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-415
               
               
               Cow position:chr26:9082204-9082556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:56-317
               
               
               Cow position:chr26:755080-755340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:57-330
               
               
               Cow position:chr26:7961671-7961389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 251

               
               
               Conread position:59-277
               
               
               Cow position:chr26:10608274-10608064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:62-187
               
               
               Cow position:chr26:7153364-7153240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:63-194
               
               
               Cow position:chr26:32832208-32832079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:63-327
               
               
               Cow position:chr26:3186631-3186362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:64-318
               
               
               Cow position:chr26:10491803-10491548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:70-331
               
               
               Cow position:chr26:20182777-20182511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:72-318
               
               
               Cow position:chr26:30806490-30806748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:83-318
               
               
               Cow position:chr26:25737473-25737235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:83-332
               
               
               Cow position:chr26:2029542-2029803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:84-274
               
               
               Cow position:chr26:17148708-17148508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:84-332
               
               
               Cow position:chr26:6029772-6030013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:84-332
               
               
               Cow position:chr26:9491926-9491678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):165, 30

               
               
               Conread position:84-332
               
               
               Cow position:chr26:13270670-13270928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:84-349
               
               
               Cow position:chr26:25441879-25442157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:87-318
               
               
               Cow position:chr26:21351688-21351452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:88-264
               
               
               Cow position:chr26:6252851-6252665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-364
               
               
               Cow position:chr26:1674055-1673772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:89-334
               
               
               Cow position:chr26:23272783-23272531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:91-318
               
               
               Cow position:chr26:31701819-31701579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:92-328
               
               
               Cow position:chr26:6323655-6323419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:92-333
               
               
               Cow position:chr26:27063675-27063921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:92-352
               
               
               Cow position:chr26:19842585-19842318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:93-311
               
               
               Cow position:chr26:8504256-8504029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:93-362
               
               
               Cow position:chr26:2408730-2408988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:93-396
               
               
               Cow position:chr26:3756221-3755935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):154, 33

               
               
               Conread position:94-332
               
               
               Cow position:chr26:31890087-31889840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 209

               
               
               Conread position:101-318
               
               
               Cow position:chr26:6498246-6498020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:101-330
               
               
               Cow position:chr26:14958027-14958263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 191

               
               
               Conread position:101-415
               
               
               Cow position:chr26:8896899-8897215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 228

               
               
               Conread position:102-277
               
               
               Cow position:chr26:24629727-24629550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:102-432
               
               
               Cow position:chr26:8034850-8034515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:104-293
               
               
               Cow position:chr26:32026383-32026581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-332
               
               
               Cow position:chr26:18231350-18231117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):35, 200

               
               
               Conread position:104-332
               
               
               Cow position:chr26:27594616-27594393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 162

               
               
               Conread position:105-311
               
               
               Cow position:chr26:1329526-1329316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:105-315
               
               
               Cow position:chr26:7224649-7224850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:105-318
               
               
               Cow position:chr26:9099779-9099988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:106-274
               
               
               Cow position:chr26:32571066-32570894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:106-318
               
               
               Cow position:chr26:32659471-32659687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:106-332
               
               
               Cow position:chr26:7103050-7103287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-405
               
               
               Cow position:chr26:9867136-9867443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):33, 195

               
               
               Conread position:108-348
               
               
               Cow position:chr26:19769105-19769351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:110-326
               
               
               Cow position:chr26:4664455-4664673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:114-420
               
               
               Cow position:chr26:28442036-28442340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:116-347
               
               
               Cow position:chr26:17675762-17675995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:117-316
               
               
               Cow position:chr26:25245012-25245210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:117-318
               
               
               Cow position:chr26:30034436-30034641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:122-318
               
               
               Cow position:chr26:7053996-7053793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:123-293
               
               
               Cow position:chr26:5988762-5988932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:127-318
               
               
               Cow position:chr26:6793903-6793705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-370
               
               
               Cow position:chr26:6828130-6827878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-415
               
               
               Cow position:chr26:19447464-19447760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:128-355
               
               
               Cow position:chr26:4747896-4748130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 182

               
               
               Conread position:131-332
               
               
               Cow position:chr26:14395281-14395485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 57

               
               
               Conread position:133-309
               
               
               Cow position:chr26:7525515-7525695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:133-333
               
               
               Cow position:chr26:20059472-20059273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:138-318
               
               
               Cow position:chr26:29576336-29576151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:151-415
               
               
               Cow position:chr26:26670811-26671067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:156-413
               
               
               Cow position:chr26:30751932-30752187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:173-364
               
               
               Cow position:chr26:5394580-5394379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:178-282
               
               
               Cow position:chr26:24454066-24453960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr27:22559931-22559725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:1-254
               
               
               Cow position:chr27:20247912-20247658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:1-279
               
               
               Cow position:chr27:13841261-13841547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:1-307
               
               
               Cow position:chr27:26218594-26218897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:1-318
               
               
               Cow position:chr27:15668878-15668558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:1-318
               
               
               Cow position:chr27:21408671-21408343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:1-318
               
               
               Cow position:chr27:22171192-22171507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:1-330
               
               
               Cow position:chr27:5932740-5932415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:1-332
               
               
               Cow position:chr27:6499953-6500288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-332
               
               
               Cow position:chr27:15271812-15272129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:2-296
               
               
               Cow position:chr27:18739272-18739575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):84, 101

               
               
               Conread position:3-240
               
               
               Cow position:chr27:8168534-8168302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):136, 95

               
               
               Conread position:3-293
               
               
               Cow position:chr27:10992253-10992538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:3-296
               
               
               Cow position:chr27:11416348-11416628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-317
               
               
               Cow position:chr27:30354448-30354137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):136, 85

               
               
               Conread position:3-340
               
               
               Cow position:chr27:8430542-8430208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:3-368
               
               
               Cow position:chr27:8048840-8048478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-368
               
               
               Cow position:chr27:25998598-25998965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):136, 72

               
               
               Conread position:4-318
               
               
               Cow position:chr27:706852-707156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):135, 11

               
               
               Conread position:4-352
               
               
               Cow position:chr27:26380275-26379934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):184, 83

               
               
               Conread position:6-279
               
               
               Cow position:chr27:15409137-15408873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):233, 73

               
               
               Conread position:6-330
               
               
               Cow position:chr27:23632499-23632821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:7-223
               
               
               Cow position:chr27:29380755-29380968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-264
               
               
               Cow position:chr27:24477317-24477572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):224, 72

               
               
               Conread position:7-293
               
               
               Cow position:chr27:14937530-14937244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-318
               
               
               Cow position:chr27:2957312-2957617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:7-318
               
               
               Cow position:chr27:4390358-4390045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:7-318
               
               
               Cow position:chr27:19387919-19388228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:7-318
               
               
               Cow position:chr27:26238925-26239233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):217, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr27:30582635-30582947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:7-328
               
               
               Cow position:chr27:28518196-28518504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:7-332
               
               
               Cow position:chr27:26643588-26643896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):224, 22

               
               
               Conread position:7-332
               
               
               Cow position:chr27:29831797-29831465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:7-337
               
               
               Cow position:chr27:1058777-1058452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:8-290
               
               
               Cow position:chr27:18593174-18593452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:8-318
               
               
               Cow position:chr27:12246555-12246869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:8-342
               
               
               Cow position:chr27:20766055-20765730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):154, 29

               
               
               Conread position:9-165
               
               
               Cow position:chr27:23860066-23860221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:9-175
               
               
               Cow position:chr27:17646266-17646111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-175
               
               
               Cow position:chr27:28260633-28260477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr27:4155898-4156072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-187
               
               
               Cow position:chr27:15215132-15215307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:9-191
               
               
               Cow position:chr27:6924987-6925167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):128, 88

               
               
               Conread position:9-203
               
               
               Cow position:chr27:20497108-20497304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:9-205
               
               
               Cow position:chr27:24509721-24509909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:9-208
               
               
               Cow position:chr27:8263435-8263239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-228
               
               
               Cow position:chr27:30260990-30260780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:9-229
               
               
               Cow position:chr27:20749108-20748894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:9-230
               
               
               Cow position:chr27:715403-715620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-231
               
               
               Cow position:chr27:17331401-17331617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:9-232
               
               
               Cow position:chr27:30389396-30389177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:9-236
               
               
               Cow position:chr27:3306677-3306893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-240
               
               
               Cow position:chr27:4858737-4858521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-262
               
               
               Cow position:chr27:7731355-7731095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:9-263
               
               
               Cow position:chr27:22513775-22513520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):154, 85

               
               
               Conread position:9-264
               
               
               Cow position:chr27:23890840-23891093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-268
               
               
               Cow position:chr27:11480734-11480470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:9-282
               
               
               Cow position:chr27:9169739-9169471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-286
               
               
               Cow position:chr27:19546609-19546325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:9-291
               
               
               Cow position:chr27:27554778-27554504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 74

               
               
               Conread position:9-293
               
               
               Cow position:chr27:13251919-13252194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-300
               
               
               Cow position:chr27:21393605-21393314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 85

               
               
               Conread position:9-303
               
               
               Cow position:chr27:20037214-20036935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):219, 84

               
               
               Conread position:9-305
               
               
               Cow position:chr27:15867292-15867587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:9-306
               
               
               Cow position:chr27:23554425-23554122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-307
               
               
               Cow position:chr27:30914912-30915200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:9-310
               
               
               Cow position:chr27:28018240-28018538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-311
               
               
               Cow position:chr27:19648040-19647742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 47

               
               
               Conread position:9-311
               
               
               Cow position:chr27:19685811-19685512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-316
               
               
               Cow position:chr27:24999838-24999527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr27:25277045-25277342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-316
               
               
               Cow position:chr27:27050009-27049705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr27:299478-299175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):222, 21

               
               
               Conread position:9-317
               
               
               Cow position:chr27:23128362-23128663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:9-317
               
               
               Cow position:chr27:26428230-26427920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr27:815264-815574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:9-318
               
               
               Cow position:chr27:1768721-1768426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:9-318
               
               
               Cow position:chr27:8062448-8062149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr27:12429309-12429617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr27:12516096-12516408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:9-318
               
               
               Cow position:chr27:13318072-13317745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr27:13411467-13411149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:9-318
               
               
               Cow position:chr27:15925248-15925544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr27:16284377-16284681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):219, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr27:22220456-22220763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr27:22454873-22454570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr27:23472161-23472467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:9-318
               
               
               Cow position:chr27:23929869-23930173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:9-318
               
               
               Cow position:chr27:24014837-24014532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:9-318
               
               
               Cow position:chr27:26581534-26581237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr27:27064537-27064231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:9-318
               
               
               Cow position:chr27:30359309-30359604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr27:30868838-30868531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-325
               
               
               Cow position:chr27:21453192-21452854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 312

               
               
               Conread position:9-326
               
               
               Cow position:chr27:19717817-19718137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:9-328
               
               
               Cow position:chr27:4812981-4812658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:9-328
               
               
               Cow position:chr27:22418864-22418547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:9-328
               
               
               Cow position:chr27:30362156-30362462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-330
               
               
               Cow position:chr27:4835704-4835387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):221, 87

               
               
               Conread position:9-330
               
               
               Cow position:chr27:9090888-9090580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-331
               
               
               Cow position:chr27:26959712-26959398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr27:6550366-6550674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr27:10979765-10980087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr27:21351119-21350792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:9-332
               
               
               Cow position:chr27:22035475-22035150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):225, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr27:22426930-22426607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr27:26413352-26413032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr27:28931899-28931564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:9-333
               
               
               Cow position:chr27:11273478-11273794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:9-334
               
               
               Cow position:chr27:7851292-7851597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):167, 50

               
               
               Conread position:9-334
               
               
               Cow position:chr27:11435420-11435108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-334
               
               
               Cow position:chr27:30764933-30765257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-335
               
               
               Cow position:chr27:8962355-8962043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:9-335
               
               
               Cow position:chr27:11536203-11535871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:9-335
               
               
               Cow position:chr27:18507552-18507858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:9-339
               
               
               Cow position:chr27:24738896-24738572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:9-344
               
               
               Cow position:chr27:1353485-1353818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:9-347
               
               
               Cow position:chr27:19660834-19661181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-357
               
               
               Cow position:chr27:19544018-19543661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:9-360
               
               
               Cow position:chr27:24321091-24321440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr27:4819811-4819413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:9-415
               
               
               Cow position:chr27:12278350-12277980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):180, 43

               
               
               Conread position:9-415
               
               
               Cow position:chr27:15871063-15871460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):128, 104

               
               
               Conread position:9-415
               
               
               Cow position:chr27:22440044-22440440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):181, 68

               
               
               Conread position:10-235
               
               
               Cow position:chr27:19896660-19896875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 55

               
               
               Conread position:10-415
               
               
               Cow position:chr27:10582276-10582661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):178, 78

               
               
               Conread position:10-415
               
               
               Cow position:chr27:25379892-25380295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:11-187
               
               
               Cow position:chr27:16088708-16088882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:11-203
               
               
               Cow position:chr27:15865511-15865696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:11-205
               
               
               Cow position:chr27:23510891-23511082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-221
               
               
               Cow position:chr27:24371146-24371343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-235
               
               
               Cow position:chr27:26490004-26489783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):126, 92

               
               
               Conread position:11-261
               
               
               Cow position:chr27:28271246-28270994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 63

               
               
               Conread position:11-264
               
               
               Cow position:chr27:30872152-30871904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:11-290
               
               
               Cow position:chr27:16705155-16705428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):171, 72

               
               
               Conread position:11-290
               
               
               Cow position:chr27:26509250-26508976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-296
               
               
               Cow position:chr27:26150922-26151207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:11-308
               
               
               Cow position:chr27:18031171-18030860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:11-314
               
               
               Cow position:chr27:20552874-20552564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:11-317
               
               
               Cow position:chr27:29039037-29038732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr27:7935253-7934954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:11-318
               
               
               Cow position:chr27:14670478-14670173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr27:26299746-26300048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:11-318
               
               
               Cow position:chr27:28206706-28207007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:11-326
               
               
               Cow position:chr27:21669213-21668908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):224, 68

               
               
               Conread position:11-326
               
               
               Cow position:chr27:26920007-26919696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:11-328
               
               
               Cow position:chr27:15319360-15319671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:11-330
               
               
               Cow position:chr27:6541536-6541846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):128, 65

               
               
               Conread position:11-332
               
               
               Cow position:chr27:1637031-1636721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-334
               
               
               Cow position:chr27:27641108-27640767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 306

               
               
               Conread position:11-335
               
               
               Cow position:chr27:27844098-27843766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 83

               
               
               Conread position:11-380
               
               
               Cow position:chr27:1122936-1123290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):128, 25

               
               
               Conread position:11-412
               
               
               Cow position:chr27:6454112-6454508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 92

               
               
               Conread position:11-415
               
               
               Cow position:chr27:27038933-27038542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):177, 24

               
               
               Conread position:12-318
               
               
               Cow position:chr27:20068069-20067770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):127, 18

               
               
               Conread position:13-276
               
               
               Cow position:chr27:15643080-15643343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 17

               
               
               Conread position:13-307
               
               
               Cow position:chr27:28001906-28001620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):127, 72

               
               
               Conread position:13-318
               
               
               Cow position:chr27:31373076-31372770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):126, 12

               
               
               Conread position:14-236
               
               
               Cow position:chr27:29184930-29184716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-318
               
               
               Cow position:chr27:24331628-24331935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:14-326
               
               
               Cow position:chr27:17472715-17473030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-328
               
               
               Cow position:chr27:536370-536676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):225, 75

               
               
               Conread position:14-344
               
               
               Cow position:chr27:2592449-2592776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:14-413
               
               
               Cow position:chr27:16786736-16787128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):174, 65

               
               
               Conread position:14-415
               
               
               Cow position:chr27:20637153-20636778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:15-416
               
               
               Cow position:chr27:30374660-30374255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):57, 65

               
               
               Conread position:16-274
               
               
               Cow position:chr27:19773921-19774190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:16-307
               
               
               Cow position:chr27:12232004-12231710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:19-317
               
               
               Cow position:chr27:21978223-21977929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:19-334
               
               
               Cow position:chr27:25471051-25471369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):195, 51

               
               
               Conread position:20-245
               
               
               Cow position:chr27:29816707-29816494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:20-316
               
               
               Cow position:chr27:30814326-30814609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):117, 73

               
               
               Conread position:20-318
               
               
               Cow position:chr27:1290938-1290659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:20-318
               
               
               Cow position:chr27:4386148-4385856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:21-212
               
               
               Cow position:chr27:23594235-23594415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:21-249
               
               
               Cow position:chr27:20789465-20789239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):210, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr27:17397540-17397240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:21-318
               
               
               Cow position:chr27:30890205-30890496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:21-327
               
               
               Cow position:chr27:4672927-4673239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:22-262
               
               
               Cow position:chr27:20549794-20549560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:23-269
               
               
               Cow position:chr27:20045808-20046038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 40

               
               
               Conread position:23-326
               
               
               Cow position:chr27:8942766-8942466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:23-334
               
               
               Cow position:chr27:10307384-10307070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:24-291
               
               
               Cow position:chr27:30988714-30988980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:25-264
               
               
               Cow position:chr27:27438584-27438349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:26-307
               
               
               Cow position:chr27:13875648-13875930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-318
               
               
               Cow position:chr27:20795709-20795993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:27-326
               
               
               Cow position:chr27:23483144-23483440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 66

               
               
               Conread position:29-240
               
               
               Cow position:chr27:7538157-7537949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:29-310
               
               
               Cow position:chr27:22603101-22603364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):154, 58

               
               
               Conread position:29-314
               
               
               Cow position:chr27:20354512-20354785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-318
               
               
               Cow position:chr27:13197827-13198125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:29-360
               
               
               Cow position:chr27:12596692-12597008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:29-369
               
               
               Cow position:chr27:8571121-8570781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:30-318
               
               
               Cow position:chr27:23070436-23070151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-332
               
               
               Cow position:chr27:25809596-25809300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:30-335
               
               
               Cow position:chr27:28921969-28921670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:30-409
               
               
               Cow position:chr27:18558280-18558671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:30-417
               
               
               Cow position:chr27:23882449-23882065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:34-239
               
               
               Cow position:chr27:6350913-6350702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):140, 63

               
               
               Conread position:35-190
               
               
               Cow position:chr27:26979784-26979630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 53

               
               
               Conread position:35-318
               
               
               Cow position:chr27:11255453-11255722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):155, 42

               
               
               Conread position:35-328
               
               
               Cow position:chr27:27040530-27040828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:35-434
               
               
               Cow position:chr27:24446229-24445839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):198, 55

               
               
               Conread position:37-210
               
               
               Cow position:chr27:26135068-26135234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:38-308
               
               
               Cow position:chr27:21569909-21569644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:38-415
               
               
               Cow position:chr27:6522975-6523353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:39-351
               
               
               Cow position:chr27:19577602-19577916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:40-318
               
               
               Cow position:chr27:31147736-31147464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):99, 57

               
               
               Conread position:42-353
               
               
               Cow position:chr27:27259549-27259852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:43-219
               
               
               Cow position:chr27:20570055-20570228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:43-293
               
               
               Cow position:chr27:29283474-29283224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:43-332
               
               
               Cow position:chr27:14902717-14902426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:43-415
               
               
               Cow position:chr27:18543928-18544296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:44-330
               
               
               Cow position:chr27:4829867-4829586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:46-318
               
               
               Cow position:chr27:8292062-8291801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:46-318
               
               
               Cow position:chr27:20283583-20283840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:47-240
               
               
               Cow position:chr27:29679387-29679199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:47-277
               
               
               Cow position:chr27:22268441-22268673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr27:27141542-27141801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:49-318
               
               
               Cow position:chr27:1183942-1183667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:52-209
               
               
               Cow position:chr27:29236523-29236677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:52-255
               
               
               Cow position:chr27:4011624-4011820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:52-290
               
               
               Cow position:chr27:30670685-30670919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:52-318
               
               
               Cow position:chr27:24559512-24559238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 192

               
               
               Conread position:52-332
               
               
               Cow position:chr27:26398313-26398036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:57-235
               
               
               Cow position:chr27:10395309-10395139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:57-316
               
               
               Cow position:chr27:1498265-1498521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:57-318
               
               
               Cow position:chr27:30550945-30551205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:57-327
               
               
               Cow position:chr27:25790754-25791022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:57-331
               
               
               Cow position:chr27:15454158-15454435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):174, 83

               
               
               Conread position:57-332
               
               
               Cow position:chr27:27449485-27449211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:62-307
               
               
               Cow position:chr27:22330718-22330472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:62-318
               
               
               Cow position:chr27:24227839-24227584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:62-344
               
               
               Cow position:chr27:794741-795019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:63-310
               
               
               Cow position:chr27:29399759-29400018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 240

               
               
               Conread position:63-318
               
               
               Cow position:chr27:28190258-28190008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:63-327
               
               
               Cow position:chr27:27020150-27019882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:65-306
               
               
               Cow position:chr27:30844120-30843881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:66-318
               
               
               Cow position:chr27:31219203-31219450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:67-317
               
               
               Cow position:chr27:15859129-15858883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):156, 18

               
               
               Conread position:71-415
               
               
               Cow position:chr27:4805950-4805611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:74-311
               
               
               Cow position:chr27:15866176-15866425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):65, 237

               
               
               Conread position:76-413
               
               
               Cow position:chr27:4825153-4824820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 160

               
               
               Conread position:82-296
               
               
               Cow position:chr27:20591950-20592171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:84-318
               
               
               Cow position:chr27:25923765-25923994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:84-324
               
               
               Cow position:chr27:27136547-27136310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-328
               
               
               Cow position:chr27:20553697-20553936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:84-334
               
               
               Cow position:chr27:29019785-29019521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:84-415
               
               
               Cow position:chr27:25411548-25411217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:85-318
               
               
               Cow position:chr27:16871942-16871710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):54, 202

               
               
               Conread position:85-360
               
               
               Cow position:chr27:27204447-27204178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 163

               
               
               Conread position:87-279
               
               
               Cow position:chr27:24357232-24357436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:87-328
               
               
               Cow position:chr27:27684149-27683898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 222

               
               
               Conread position:88-296
               
               
               Cow position:chr27:23659362-23659153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:88-311
               
               
               Cow position:chr27:1884023-1884240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:88-311
               
               
               Cow position:chr27:27003298-27003079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:88-344
               
               
               Cow position:chr27:9159164-9159430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 154

               
               
               Conread position:91-316
               
               
               Cow position:chr27:11081170-11081403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 196

               
               
               Conread position:91-332
               
               
               Cow position:chr27:11815781-11815536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:92-290
               
               
               Cow position:chr27:27550764-27550566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:92-315
               
               
               Cow position:chr27:18215030-18215262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 44

               
               
               Conread position:92-332
               
               
               Cow position:chr27:2930621-2930373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-348
               
               
               Cow position:chr27:6058481-6058741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:93-318
               
               
               Cow position:chr27:28038362-28038128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:93-349
               
               
               Cow position:chr27:27632627-27632370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 63

               
               
               Conread position:94-318
               
               
               Cow position:chr27:22723725-22723497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:95-278
               
               
               Cow position:chr27:18434489-18434301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):89, 42

               
               
               Conread position:96-347
               
               
               Cow position:chr27:25676208-25676473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 53

               
               
               Conread position:98-248
               
               
               Cow position:chr27:23455171-23455016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:100-296
               
               
               Cow position:chr27:31499049-31499255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:100-410
               
               
               Cow position:chr27:30177590-30177275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:101-293
               
               
               Cow position:chr27:22547421-22547220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:104-332
               
               
               Cow position:chr27:7958851-7958612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-358
               
               
               Cow position:chr27:22498547-22498802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:105-311
               
               
               Cow position:chr27:29250869-29251082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:105-326
               
               
               Cow position:chr27:13005831-13006049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:106-261
               
               
               Cow position:chr27:14343474-14343315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-306
               
               
               Cow position:chr27:6037115-6037319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:107-332
               
               
               Cow position:chr27:26441068-26440835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 198

               
               
               Conread position:108-327
               
               
               Cow position:chr27:30560908-30561130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:108-365
               
               
               Cow position:chr27:13639000-13638736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:109-334
               
               
               Cow position:chr27:30527174-30527391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:112-332
               
               
               Cow position:chr27:8629875-8629651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:113-364
               
               
               Cow position:chr27:11762735-11762484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:117-318
               
               
               Cow position:chr27:22771754-22771967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-330
               
               
               Cow position:chr27:9977829-9978048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:119-331
               
               
               Cow position:chr27:29493903-29493695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:121-326
               
               
               Cow position:chr27:16619995-16620208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 186

               
               
               Conread position:123-332
               
               
               Cow position:chr27:6073929-6074139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 177

               
               
               Conread position:128-318
               
               
               Cow position:chr27:28164392-28164202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:129-332
               
               
               Cow position:chr27:25783619-25783825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:131-318
               
               
               Cow position:chr27:26163402-26163587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:133-334
               
               
               Cow position:chr27:22179775-22179572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 45

               
               
               Conread position:137-330
               
               
               Cow position:chr27:15200717-15200918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:138-318
               
               
               Cow position:chr27:31231068-31230885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:138-340
               
               
               Cow position:chr27:21419044-21418835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:145-352
               
               
               Cow position:chr27:31217136-31216920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:151-307
               
               
               Cow position:chr27:16263373-16263531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:152-356
               
               
               Cow position:chr27:21578558-21578355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:155-318
               
               
               Cow position:chr27:18922492-18922659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:155-332
               
               
               Cow position:chr27:30389177-30388993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:155-369
               
               
               Cow position:chr27:26625167-26625386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:164-353
               
               
               Cow position:chr27:2847944-2848139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:170-415
               
               
               Cow position:chr27:12282809-12282555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:174-316
               
               
               Cow position:chr27:13847700-13847846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:179-331
               
               
               Cow position:chr27:12650564-12650407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 150

               
               
               Conread position:257-364
               
               
               Cow position:chr27:7648417-7648313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-277
               
               
               Cow position:chr28:27313663-27313954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 285

               
               
               Conread position:1-300
               
               
               Cow position:chr28:5074439-5074733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:1-310
               
               
               Cow position:chr28:29416648-29416954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:1-315
               
               
               Cow position:chr28:16110006-16109700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 90

               
               
               Conread position:1-326
               
               
               Cow position:chr28:2814440-2814754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:1-396
               
               
               Cow position:chr28:5366055-5366462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:1-405
               
               
               Cow position:chr28:25071188-25070779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:1-413
               
               
               Cow position:chr28:10681756-10682156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:2-210
               
               
               Cow position:chr28:19262521-19262724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 75

               
               
               Conread position:2-318
               
               
               Cow position:chr28:11786651-11786955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:3-166
               
               
               Cow position:chr28:8147798-8147953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 81

               
               
               Conread position:3-316
               
               
               Cow position:chr28:12430670-12430363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:3-318
               
               
               Cow position:chr28:2899054-2898748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):137, 82

               
               
               Conread position:3-332
               
               
               Cow position:chr28:11379975-11380304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:4-294
               
               
               Cow position:chr28:3256862-3256569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:6-314
               
               
               Cow position:chr28:5128667-5128970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):224, 78

               
               
               Conread position:7-194
               
               
               Cow position:chr28:3484641-3484459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 56

               
               
               Conread position:7-230
               
               
               Cow position:chr28:22571607-22571816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:7-250
               
               
               Cow position:chr28:18186617-18186380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 67

               
               
               Conread position:7-267
               
               
               Cow position:chr28:33285048-33285306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:7-293
               
               
               Cow position:chr28:8408795-8408517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:7-314
               
               
               Cow position:chr28:751288-750982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):140, 86

               
               
               Conread position:7-315
               
               
               Cow position:chr28:24343427-24343125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:7-332
               
               
               Cow position:chr28:7512523-7512853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:7-332
               
               
               Cow position:chr28:13693811-13693488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:7-332
               
               
               Cow position:chr28:23530935-23530603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:7-332
               
               
               Cow position:chr28:30303138-30303454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-375
               
               
               Cow position:chr28:19025944-19026305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 85

               
               
               Conread position:8-278
               
               
               Cow position:chr28:3714861-3714594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:8-318
               
               
               Cow position:chr28:6059410-6059720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 79

               
               
               Conread position:8-318
               
               
               Cow position:chr28:18717070-18717373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):177, 85

               
               
               Conread position:8-351
               
               
               Cow position:chr28:2340597-2340251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:8-415
               
               
               Cow position:chr28:5904788-5904400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):131, 8

               
               
               Conread position:8-415
               
               
               Cow position:chr28:18139397-18139792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:9-118
               
               
               Cow position:chr28:7156896-7156791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-165
               
               
               Cow position:chr28:11559573-11559724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-186
               
               
               Cow position:chr28:3726943-3726772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-186
               
               
               Cow position:chr28:17601816-17601986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-186
               
               
               Cow position:chr28:19564169-19564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-192
               
               
               Cow position:chr28:23296381-23296206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:9-199
               
               
               Cow position:chr28:32174688-32174507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:9-203
               
               
               Cow position:chr28:27161267-27161460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-204
               
               
               Cow position:chr28:11346428-11346614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-210
               
               
               Cow position:chr28:3449362-3449164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):126, 92

               
               
               Conread position:9-219
               
               
               Cow position:chr28:7008919-7009118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-226
               
               
               Cow position:chr28:30746671-30746879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-228
               
               
               Cow position:chr28:10057528-10057745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-232
               
               
               Cow position:chr28:32365903-32365688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-235
               
               
               Cow position:chr28:26982679-26982903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-240
               
               
               Cow position:chr28:4643711-4643928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-240
               
               
               Cow position:chr28:11866606-11866831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):140, 74

               
               
               Conread position:9-240
               
               
               Cow position:chr28:17235677-17235894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):221, 34

               
               
               Conread position:9-242
               
               
               Cow position:chr28:32844875-32845104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-245
               
               
               Cow position:chr28:4016590-4016368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-247
               
               
               Cow position:chr28:8291486-8291264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-251
               
               
               Cow position:chr28:23668723-23668960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-256
               
               
               Cow position:chr28:18759987-18760228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:9-264
               
               
               Cow position:chr28:10845166-10844925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:9-264
               
               
               Cow position:chr28:14512592-14512332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:9-279
               
               
               Cow position:chr28:4884196-4884475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:9-279
               
               
               Cow position:chr28:5437026-5437300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-282
               
               
               Cow position:chr28:12947008-12946726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):170, 95

               
               
               Conread position:9-290
               
               
               Cow position:chr28:18625293-18625003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 84

               
               
               Conread position:9-291
               
               
               Cow position:chr28:10053266-10053559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:9-291
               
               
               Cow position:chr28:21380940-21380654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-291
               
               
               Cow position:chr28:25806632-25806362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-292
               
               
               Cow position:chr28:2737747-2738033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-293
               
               
               Cow position:chr28:5144462-5144745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):176, 75

               
               
               Conread position:9-296
               
               
               Cow position:chr28:8347790-8347509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):134, 77

               
               
               Conread position:9-296
               
               
               Cow position:chr28:12951476-12951207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-305
               
               
               Cow position:chr28:11884462-11884757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-307
               
               
               Cow position:chr28:34430364-34430663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-308
               
               
               Cow position:chr28:11686968-11687270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:9-309
               
               
               Cow position:chr28:18354274-18354556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-310
               
               
               Cow position:chr28:9636398-9636696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):149, 68

               
               
               Conread position:9-311
               
               
               Cow position:chr28:25249413-25249115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:9-311
               
               
               Cow position:chr28:26220317-26220021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-316
               
               
               Cow position:chr28:3078622-3078923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr28:15677945-15677652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):235, 70

               
               
               Conread position:9-316
               
               
               Cow position:chr28:16346473-16346771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):232, 14

               
               
               Conread position:9-316
               
               
               Cow position:chr28:21355290-21354979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr28:21502451-21502149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-317
               
               
               Cow position:chr28:23007671-23007974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr28:3492725-3493031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-318
               
               
               Cow position:chr28:4914032-4914349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 102

               
               
               Conread position:9-318
               
               
               Cow position:chr28:5236545-5236847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-318
               
               
               Cow position:chr28:6971289-6971586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr28:7503904-7503591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr28:10529431-10529730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr28:11752080-11752392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr28:19079786-19080095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr28:20313336-20313028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr28:22485312-22485001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:9-318
               
               
               Cow position:chr28:28765844-28766157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr28:31109945-31110252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr28:34230287-34229982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):129, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr28:34636725-34636431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-322
               
               
               Cow position:chr28:20963470-20963783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):114, 70

               
               
               Conread position:9-326
               
               
               Cow position:chr28:3023854-3024167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):232, 96

               
               
               Conread position:9-326
               
               
               Cow position:chr28:4307838-4308153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:9-326
               
               
               Cow position:chr28:16085384-16085070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr28:26533602-26533287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-326
               
               
               Cow position:chr28:33052096-33051765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:9-328
               
               
               Cow position:chr28:25399928-25399633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:9-329
               
               
               Cow position:chr28:13474359-13474048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:9-329
               
               
               Cow position:chr28:14508312-14508624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-330
               
               
               Cow position:chr28:7144857-7144529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:9-330
               
               
               Cow position:chr28:21845016-21844697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:9-331
               
               
               Cow position:chr28:2819834-2819498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):92, 136

               
               
               Conread position:9-332
               
               
               Cow position:chr28:3143819-3144151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr28:3408159-3408478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):81, 124

               
               
               Conread position:9-332
               
               
               Cow position:chr28:5684762-5684443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):198, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr28:5817901-5817586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr28:7228329-7228644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:9-332
               
               
               Cow position:chr28:24966445-24966127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:9-332
               
               
               Cow position:chr28:26743685-26743361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:9-333
               
               
               Cow position:chr28:5792767-5792440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-335
               
               
               Cow position:chr28:5204254-5203938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-335
               
               
               Cow position:chr28:5827009-5826684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-335
               
               
               Cow position:chr28:7697923-7698245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-335
               
               
               Cow position:chr28:7865388-7865064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:9-335
               
               
               Cow position:chr28:23616466-23616138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-341
               
               
               Cow position:chr28:14494884-14494562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):203, 84

               
               
               Conread position:9-352
               
               
               Cow position:chr28:2862927-2862580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-353
               
               
               Cow position:chr28:9740525-9740189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):219, 84

               
               
               Conread position:9-360
               
               
               Cow position:chr28:26719402-26719071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:9-363
               
               
               Cow position:chr28:21570250-21569892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):154, 66

               
               
               Conread position:9-412
               
               
               Cow position:chr28:24672324-24671940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:9-414
               
               
               Cow position:chr28:21868516-21868116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr28:7548999-7549398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr28:10615887-10616286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 124

               
               
               Conread position:9-415
               
               
               Cow position:chr28:11585143-11585543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr28:19222092-19222481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):215, 64

               
               
               Conread position:9-415
               
               
               Cow position:chr28:25727431-25727045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:9-415
               
               
               Cow position:chr28:26922309-26922706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-416
               
               
               Cow position:chr28:4282432-4282829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:10-248
               
               
               Cow position:chr28:25728252-25728028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:10-264
               
               
               Cow position:chr28:4881182-4881439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-290
               
               
               Cow position:chr28:26685175-26684893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:10-311
               
               
               Cow position:chr28:22346079-22345779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):222, 83

               
               
               Conread position:10-329
               
               
               Cow position:chr28:27218381-27218062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-332
               
               
               Cow position:chr28:6960567-6960235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 56

               
               
               Conread position:10-332
               
               
               Cow position:chr28:8787598-8787289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:10-333
               
               
               Cow position:chr28:18591328-18591008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):214, 26

               
               
               Conread position:10-333
               
               
               Cow position:chr28:25057024-25056709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):204, 83

               
               
               Conread position:10-335
               
               
               Cow position:chr28:23676196-23675880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 69

               
               
               Conread position:10-335
               
               
               Cow position:chr28:25700807-25701122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:11-290
               
               
               Cow position:chr28:11007258-11006957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:11-311
               
               
               Cow position:chr28:4058039-4057746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:11-316
               
               
               Cow position:chr28:7751244-7751546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-317
               
               
               Cow position:chr28:25564142-25563830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 94

               
               
               Conread position:11-318
               
               
               Cow position:chr28:12758443-12758754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr28:12942435-12942138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:11-318
               
               
               Cow position:chr28:14657754-14657453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-318
               
               
               Cow position:chr28:16687084-16686786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:11-318
               
               
               Cow position:chr28:22321476-22321175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:11-326
               
               
               Cow position:chr28:29199787-29199472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 69

               
               
               Conread position:11-332
               
               
               Cow position:chr28:10669641-10669313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:11-332
               
               
               Cow position:chr28:12619632-12619301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 82

               
               
               Conread position:11-332
               
               
               Cow position:chr28:16211044-16211358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):222, 61

               
               
               Conread position:11-332
               
               
               Cow position:chr28:30293537-30293851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:11-415
               
               
               Cow position:chr28:21598195-21598589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-432
               
               
               Cow position:chr28:32300298-32300719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:13-335
               
               
               Cow position:chr28:11426486-11426809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):126, 75

               
               
               Conread position:13-356
               
               
               Cow position:chr28:14218420-14218760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:13-415
               
               
               Cow position:chr28:10745269-10744869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):126, 81

               
               
               Conread position:14-187
               
               
               Cow position:chr28:23447770-23447935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 67

               
               
               Conread position:14-318
               
               
               Cow position:chr28:26103756-26103468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:14-330
               
               
               Cow position:chr28:30608133-30608440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):230, 44

               
               
               Conread position:14-332
               
               
               Cow position:chr28:2960776-2961083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:14-334
               
               
               Cow position:chr28:23793255-23793564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:14-415
               
               
               Cow position:chr28:8022048-8022447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 164

               
               
               Conread position:14-415
               
               
               Cow position:chr28:18462558-18462960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:15-183
               
               
               Cow position:chr28:32366186-32366345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-318
               
               
               Cow position:chr28:616439-616156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:15-415
               
               
               Cow position:chr28:3769611-3770006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):274, 70

               
               
               Conread position:16-260
               
               
               Cow position:chr28:23724410-23724645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:16-264
               
               
               Cow position:chr28:4098882-4098653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:16-308
               
               
               Cow position:chr28:9285318-9285615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:16-318
               
               
               Cow position:chr28:28164140-28163847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:16-413
               
               
               Cow position:chr28:18791068-18790678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:19-187
               
               
               Cow position:chr28:3011220-3011385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 78

               
               
               Conread position:19-308
               
               
               Cow position:chr28:25825813-25826108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:19-316
               
               
               Cow position:chr28:11500838-11501137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:20-203
               
               
               Cow position:chr28:9812326-9812155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:20-296
               
               
               Cow position:chr28:9099983-9099709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:20-310
               
               
               Cow position:chr28:22279152-22279422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:20-318
               
               
               Cow position:chr28:6862002-6861706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:20-318
               
               
               Cow position:chr28:18934502-18934205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-330
               
               
               Cow position:chr28:16401947-16401636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:20-351
               
               
               Cow position:chr28:15498157-15498498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):119, 60

               
               
               Conread position:20-356
               
               
               Cow position:chr28:23460195-23459853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:21-235
               
               
               Cow position:chr28:2291675-2291875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):163, 38

               
               
               Conread position:21-316
               
               
               Cow position:chr28:22371634-22371921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):209, 72

               
               
               Conread position:21-318
               
               
               Cow position:chr28:16204287-16204577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr28:25596675-25596385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:21-331
               
               
               Cow position:chr28:11527211-11527516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):210, 83

               
               
               Conread position:22-317
               
               
               Cow position:chr28:15263668-15263971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):117, 55

               
               
               Conread position:23-229
               
               
               Cow position:chr28:16407138-16406936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:23-326
               
               
               Cow position:chr28:23410280-23410579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:23-332
               
               
               Cow position:chr28:5771415-5771105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:24-316
               
               
               Cow position:chr28:4071013-4070724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:24-362
               
               
               Cow position:chr28:4841349-4841686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 76

               
               
               Conread position:26-208
               
               
               Cow position:chr28:5193373-5193187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:26-316
               
               
               Cow position:chr28:14649388-14649102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:26-317
               
               
               Cow position:chr28:7267901-7268182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):204, 62

               
               
               Conread position:26-318
               
               
               Cow position:chr28:30327046-30327328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:26-415
               
               
               Cow position:chr28:4588142-4587760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:26-415
               
               
               Cow position:chr28:5931397-5931012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:27-240
               
               
               Cow position:chr28:9928250-9928446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):153, 36

               
               
               Conread position:27-251
               
               
               Cow position:chr28:15577221-15577439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:27-316
               
               
               Cow position:chr28:16252815-16253100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:27-347
               
               
               Cow position:chr28:13176641-13176955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 8

               
               
               Conread position:29-307
               
               
               Cow position:chr28:10606588-10606854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:29-318
               
               
               Cow position:chr28:25424255-25424549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:29-332
               
               
               Cow position:chr28:21363786-21363497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:30-318
               
               
               Cow position:chr28:20124822-20124538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-326
               
               
               Cow position:chr28:13267831-13267525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 81

               
               
               Conread position:30-328
               
               
               Cow position:chr28:17288254-17287967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-330
               
               
               Cow position:chr28:17316903-17316599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):159, 56

               
               
               Conread position:31-317
               
               
               Cow position:chr28:13607923-13607639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:32-240
               
               
               Cow position:chr28:28903627-28903833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:32-316
               
               
               Cow position:chr28:7607272-7606982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:33-279
               
               
               Cow position:chr28:25283235-25282996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:33-362
               
               
               Cow position:chr28:22081603-22081287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):195, 28

               
               
               Conread position:34-367
               
               
               Cow position:chr28:13865880-13865549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:36-268
               
               
               Cow position:chr28:25459566-25459328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):103, 67

               
               
               Conread position:38-238
               
               
               Cow position:chr28:33032292-33032102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 59

               
               
               Conread position:38-331
               
               
               Cow position:chr28:21103795-21104107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 263

               
               
               Conread position:39-331
               
               
               Cow position:chr28:26269360-26269069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:39-419
               
               
               Cow position:chr28:8084733-8084347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:40-228
               
               
               Cow position:chr28:7607948-7608133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:40-324
               
               
               Cow position:chr28:20409420-20409148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):257, 47

               
               
               Conread position:42-310
               
               
               Cow position:chr28:19394645-19394390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:43-249
               
               
               Cow position:chr28:7542057-7542261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:43-296
               
               
               Cow position:chr28:33163434-33163693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:43-308
               
               
               Cow position:chr28:5552913-5553167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:43-415
               
               
               Cow position:chr28:8681814-8682187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:44-325
               
               
               Cow position:chr28:34877943-34878227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:47-235
               
               
               Cow position:chr28:19024166-19023976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:47-240
               
               
               Cow position:chr28:118029-118217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-332
               
               
               Cow position:chr28:4880243-4880525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):196, 33

               
               
               Conread position:47-339
               
               
               Cow position:chr28:5773657-5773374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-414
               
               
               Cow position:chr28:4022409-4022047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:50-413
               
               
               Cow position:chr28:7590164-7590517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):89, 5

               
               
               Conread position:53-342
               
               
               Cow position:chr28:34150506-34150802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:55-316
               
               
               Cow position:chr28:6307905-6307647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:55-318
               
               
               Cow position:chr28:15374810-15375073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:55-318
               
               
               Cow position:chr28:19222589-19222844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-318
               
               
               Cow position:chr28:22170696-22170965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:56-276
               
               
               Cow position:chr28:22739804-22739595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:57-318
               
               
               Cow position:chr28:9390352-9390612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:57-366
               
               
               Cow position:chr28:26784452-26784764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:58-257
               
               
               Cow position:chr28:3105269-3105052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:59-324
               
               
               Cow position:chr28:6577650-6577402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:59-344
               
               
               Cow position:chr28:15689053-15688768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:60-332
               
               
               Cow position:chr28:16441387-16441126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:62-327
               
               
               Cow position:chr28:15008167-15007905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:62-331
               
               
               Cow position:chr28:23840210-23839949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:62-359
               
               
               Cow position:chr28:17029711-17030003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:63-311
               
               
               Cow position:chr28:11422808-11423044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:63-318
               
               
               Cow position:chr28:24646544-24646293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):170, 29

               
               
               Conread position:66-369
               
               
               Cow position:chr28:27428749-27428452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:74-317
               
               
               Cow position:chr28:16386504-16386752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:80-318
               
               
               Cow position:chr28:30978271-30978035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:82-308
               
               
               Cow position:chr28:5658548-5658317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:82-415
               
               
               Cow position:chr28:31971762-31972088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:83-308
               
               
               Cow position:chr28:23776037-23775808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:84-318
               
               
               Cow position:chr28:2905563-2905333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:84-332
               
               
               Cow position:chr28:4536444-4536209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:84-396
               
               
               Cow position:chr28:34561336-34561041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:84-415
               
               
               Cow position:chr28:34133851-34133520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):137, 41

               
               
               Conread position:85-291
               
               
               Cow position:chr28:10035387-10035180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:87-259
               
               
               Cow position:chr28:6051721-6051551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):160, 24

               
               
               Conread position:87-311
               
               
               Cow position:chr28:22332520-22332309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:88-230
               
               
               Cow position:chr28:13290147-13290287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:88-332
               
               
               Cow position:chr28:16363981-16364232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:89-317
               
               
               Cow position:chr28:16214915-16215137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:90-318
               
               
               Cow position:chr28:16243774-16244006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:90-328
               
               
               Cow position:chr28:23621529-23621291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:92-205
               
               
               Cow position:chr28:5838523-5838407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-318
               
               
               Cow position:chr28:16370095-16370321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:92-332
               
               
               Cow position:chr28:14151216-14150973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:92-342
               
               
               Cow position:chr28:10172428-10172685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:92-369
               
               
               Cow position:chr28:28414657-28414373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 212

               
               
               Conread position:92-415
               
               
               Cow position:chr28:12048722-12049049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:93-325
               
               
               Cow position:chr28:10762642-10762421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:93-326
               
               
               Cow position:chr28:10642035-10642274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:93-332
               
               
               Cow position:chr28:13356593-13356846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 220

               
               
               Conread position:93-415
               
               
               Cow position:chr28:3751294-3750983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:96-318
               
               
               Cow position:chr28:8348674-8348901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:97-318
               
               
               Cow position:chr28:19295382-19295610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:98-318
               
               
               Cow position:chr28:10888640-10888416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:100-318
               
               
               Cow position:chr28:24996613-24996835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:100-414
               
               
               Cow position:chr28:14933942-14933627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:100-415
               
               
               Cow position:chr28:25763006-25762696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:101-318
               
               
               Cow position:chr28:17637891-17638114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 174

               
               
               Conread position:101-331
               
               
               Cow position:chr28:14234938-14234713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:102-296
               
               
               Cow position:chr28:8656767-8656961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:103-303
               
               
               Cow position:chr28:10478372-10478575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:103-332
               
               
               Cow position:chr28:2279693-2279927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:105-415
               
               
               Cow position:chr28:11451493-11451811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:106-290
               
               
               Cow position:chr28:13447667-13447489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:106-294
               
               
               Cow position:chr28:9108416-9108219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:106-318
               
               
               Cow position:chr28:7684713-7684924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:106-326
               
               
               Cow position:chr28:23231095-23231321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:107-318
               
               
               Cow position:chr28:29455687-29455904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:110-332
               
               
               Cow position:chr28:3077955-3077732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:112-318
               
               
               Cow position:chr28:7328859-7328655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:113-305
               
               
               Cow position:chr28:26340305-26340102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:113-415
               
               
               Cow position:chr28:29073790-29074106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:114-306
               
               
               Cow position:chr28:33036510-33036701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:114-318
               
               
               Cow position:chr28:15272300-15272508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:115-332
               
               
               Cow position:chr28:17738113-17738340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:117-356
               
               
               Cow position:chr28:21873729-21873487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:118-318
               
               
               Cow position:chr28:22132884-22132679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:120-415
               
               
               Cow position:chr28:13371217-13371512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:123-311
               
               
               Cow position:chr28:9294967-9294773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:133-318
               
               
               Cow position:chr28:4938773-4938591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:138-353
               
               
               Cow position:chr28:32747862-32747657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:138-415
               
               
               Cow position:chr28:5805454-5805183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:139-326
               
               
               Cow position:chr28:20759984-20760179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:146-317
               
               
               Cow position:chr28:32813065-32813245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:152-318
               
               
               Cow position:chr28:8372397-8372223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:152-331
               
               
               Cow position:chr28:16450780-16450955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:155-415
               
               
               Cow position:chr28:3480192-3479929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 193

               
               
               Conread position:156-297
               
               
               Cow position:chr28:8628857-8629003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:156-332
               
               
               Cow position:chr28:16879354-16879529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:162-413
               
               
               Cow position:chr28:3740758-3740518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:173-330
               
               
               Cow position:chr28:5255651-5255491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):69, 49

               
               
               Conread position:173-366
               
               
               Cow position:chr28:31415526-31415720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:173-415
               
               
               Cow position:chr28:25315099-25314845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:175-339
               
               
               Cow position:chr28:28590638-28590471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:182-412
               
               
               Cow position:chr28:22051665-22051421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 194

               
               
               Conread position:1-220
               
               
               Cow position:chr29:16272804-16272573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr29:41365171-41364909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:1-294
               
               
               Cow position:chr29:1229669-1229378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:1-310
               
               
               Cow position:chr29:20903228-20903534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:1-318
               
               
               Cow position:chr29:356383-356072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:1-318
               
               
               Cow position:chr29:31929049-31928725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:1-332
               
               
               Cow position:chr29:465337-465670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-332
               
               
               Cow position:chr29:1306798-1307132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:1-336
               
               
               Cow position:chr29:40337475-40337796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:1-415
               
               
               Cow position:chr29:34745596-34745997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:3-300
               
               
               Cow position:chr29:7966304-7966010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):178, 101

               
               
               Conread position:3-305
               
               
               Cow position:chr29:478166-477862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 76

               
               
               Conread position:3-330
               
               
               Cow position:chr29:749847-750164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:3-415
               
               
               Cow position:chr29:21196591-21196993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:4-360
               
               
               Cow position:chr29:16663152-16662787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:5-336
               
               
               Cow position:chr29:10153740-10154057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):134, 27

               
               
               Conread position:6-314
               
               
               Cow position:chr29:18072995-18072679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:6-415
               
               
               Cow position:chr29:17131564-17131960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):180, 81

               
               
               Conread position:7-246
               
               
               Cow position:chr29:23243824-23244058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 65

               
               
               Conread position:7-268
               
               
               Cow position:chr29:11053806-11054058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:7-293
               
               
               Cow position:chr29:23844892-23844602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):127, 91

               
               
               Conread position:7-296
               
               
               Cow position:chr29:26985281-26984995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):136, 73

               
               
               Conread position:7-303
               
               
               Cow position:chr29:39023285-39023577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 120

               
               
               Conread position:7-309
               
               
               Cow position:chr29:29302604-29302899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:7-310
               
               
               Cow position:chr29:22162195-22162499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:7-311
               
               
               Cow position:chr29:23983901-23984211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:7-316
               
               
               Cow position:chr29:18021629-18021927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:7-318
               
               
               Cow position:chr29:4367780-4367467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-318
               
               
               Cow position:chr29:5947751-5948041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:7-318
               
               
               Cow position:chr29:13554191-13553878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-368
               
               
               Cow position:chr29:18695307-18694953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 72

               
               
               Conread position:7-412
               
               
               Cow position:chr29:45005575-45005956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:7-413
               
               
               Cow position:chr29:2744213-2744613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:8-178
               
               
               Cow position:chr29:25839753-25839584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 86

               
               
               Conread position:8-263
               
               
               Cow position:chr29:26270120-26269868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):131, 6

               
               
               Conread position:8-307
               
               
               Cow position:chr29:41747501-41747197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 92

               
               
               Conread position:8-332
               
               
               Cow position:chr29:19428713-19428400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:8-343
               
               
               Cow position:chr29:26129548-26129220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:9-156
               
               
               Cow position:chr29:13487003-13486861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-164
               
               
               Cow position:chr29:22721429-22721277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:9-179
               
               
               Cow position:chr29:8862429-8862590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-187
               
               
               Cow position:chr29:4444770-4444596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-187
               
               
               Cow position:chr29:12625924-12626098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-209
               
               
               Cow position:chr29:36220586-36220386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:9-212
               
               
               Cow position:chr29:17301586-17301385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-227
               
               
               Cow position:chr29:26416403-26416201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:9-227
               
               
               Cow position:chr29:31674685-31674471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:9-235
               
               
               Cow position:chr29:4085361-4085152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-240
               
               
               Cow position:chr29:5186441-5186667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-240
               
               
               Cow position:chr29:25092158-25091940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-240
               
               
               Cow position:chr29:30440989-30440756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:9-245
               
               
               Cow position:chr29:28166170-28166390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:9-245
               
               
               Cow position:chr29:37618358-37618128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:9-253
               
               
               Cow position:chr29:11647146-11646914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:9-262
               
               
               Cow position:chr29:17297188-17296937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-264
               
               
               Cow position:chr29:17154830-17154575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:9-266
               
               
               Cow position:chr29:11434171-11433920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):138, 78

               
               
               Conread position:9-276
               
               
               Cow position:chr29:38581031-38580763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:9-290
               
               
               Cow position:chr29:4520388-4520109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-290
               
               
               Cow position:chr29:13639314-13639593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:9-290
               
               
               Cow position:chr29:43496091-43495833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:9-293
               
               
               Cow position:chr29:40852980-40852703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:9-306
               
               
               Cow position:chr29:16309795-16309508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-307
               
               
               Cow position:chr29:17409387-17409086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:9-308
               
               
               Cow position:chr29:11562665-11562370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):211, 78

               
               
               Conread position:9-310
               
               
               Cow position:chr29:2071519-2071814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:9-311
               
               
               Cow position:chr29:36183333-36183029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:9-314
               
               
               Cow position:chr29:18735587-18735893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-317
               
               
               Cow position:chr29:6015178-6014850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:9-317
               
               
               Cow position:chr29:21443286-21443597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 98

               
               
               Conread position:9-317
               
               
               Cow position:chr29:41811538-41811830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr29:3704146-3704457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr29:8926409-8926713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):222, 94

               
               
               Conread position:9-318
               
               
               Cow position:chr29:13127070-13127362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr29:13372716-13372409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr29:15940578-15940892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr29:17222465-17222154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr29:19339053-19338725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:9-318
               
               
               Cow position:chr29:22936322-22936027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr29:24604084-24604402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:9-318
               
               
               Cow position:chr29:26334335-26334643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr29:36530919-36530609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):223, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr29:39111259-39111562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:9-325
               
               
               Cow position:chr29:27009468-27009157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:9-327
               
               
               Cow position:chr29:37599164-37599467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:9-328
               
               
               Cow position:chr29:29057227-29056919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:9-330
               
               
               Cow position:chr29:40166296-40165976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:9-332
               
               
               Cow position:chr29:86959-87285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr29:14501645-14501326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:9-332
               
               
               Cow position:chr29:18878429-18878769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr29:26771491-26771173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:9-332
               
               
               Cow position:chr29:28775411-28775722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):171, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr29:35501602-35501916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr29:36217164-36216850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-333
               
               
               Cow position:chr29:6844580-6844898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:9-333
               
               
               Cow position:chr29:45589536-45589854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:9-334
               
               
               Cow position:chr29:12680208-12679884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-335
               
               
               Cow position:chr29:7955938-7956255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):233, 95

               
               
               Conread position:9-335
               
               
               Cow position:chr29:19756486-19756177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:9-345
               
               
               Cow position:chr29:22068688-22069028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:9-347
               
               
               Cow position:chr29:29475204-29475530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:9-356
               
               
               Cow position:chr29:13028492-13028165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-362
               
               
               Cow position:chr29:12783911-12784254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-364
               
               
               Cow position:chr29:16195892-16195552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:9-368
               
               
               Cow position:chr29:41530902-41530546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-412
               
               
               Cow position:chr29:24952740-24952346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-413
               
               
               Cow position:chr29:1022348-1021928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr29:9638268-9638655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr29:11397874-11398270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-415
               
               
               Cow position:chr29:24624301-24623899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):217, 46

               
               
               Conread position:9-415
               
               
               Cow position:chr29:26263888-26263512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):230, 68

               
               
               Conread position:9-415
               
               
               Cow position:chr29:26615668-26616079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:9-415
               
               
               Cow position:chr29:28868695-28868288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr29:32290661-32290259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):134, 74

               
               
               Conread position:9-415
               
               
               Cow position:chr29:32799660-32800050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:10-277
               
               
               Cow position:chr29:31489370-31489106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):129, 59

               
               
               Conread position:10-290
               
               
               Cow position:chr29:19821334-19821070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:10-303
               
               
               Cow position:chr29:23698029-23697740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:10-318
               
               
               Cow position:chr29:29769301-29769600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:10-320
               
               
               Cow position:chr29:19792225-19792535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:10-332
               
               
               Cow position:chr29:4328463-4328166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:10-332
               
               
               Cow position:chr29:11135845-11136156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):199, 33

               
               
               Conread position:11-215
               
               
               Cow position:chr29:4051937-4052131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:11-219
               
               
               Cow position:chr29:29795332-29795539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):127, 66

               
               
               Conread position:11-222
               
               
               Cow position:chr29:29314602-29314809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-236
               
               
               Cow position:chr29:25814787-25815004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:11-240
               
               
               Cow position:chr29:35442412-35442634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-240
               
               
               Cow position:chr29:44988740-44988950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):177, 61

               
               
               Conread position:11-282
               
               
               Cow position:chr29:26986980-26986724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:11-293
               
               
               Cow position:chr29:868825-868543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:11-318
               
               
               Cow position:chr29:16609798-16609484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 103

               
               
               Conread position:11-318
               
               
               Cow position:chr29:35292143-35291845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:11-326
               
               
               Cow position:chr29:16657749-16657429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:11-328
               
               
               Cow position:chr29:19907407-19907092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:11-332
               
               
               Cow position:chr29:6293428-6293735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-332
               
               
               Cow position:chr29:15738290-15738612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:11-334
               
               
               Cow position:chr29:25088793-25088483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:11-414
               
               
               Cow position:chr29:9912226-9911820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-415
               
               
               Cow position:chr29:650329-649925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:11-415
               
               
               Cow position:chr29:39567732-39567343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:12-318
               
               
               Cow position:chr29:12762005-12761713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:12-318
               
               
               Cow position:chr29:26330255-26329964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:14-209
               
               
               Cow position:chr29:18462499-18462696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:14-304
               
               
               Cow position:chr29:17668534-17668255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:14-306
               
               
               Cow position:chr29:25474970-25474665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 87

               
               
               Conread position:14-314
               
               
               Cow position:chr29:24103494-24103798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:14-318
               
               
               Cow position:chr29:34297521-34297819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:14-324
               
               
               Cow position:chr29:1556978-1556673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:14-335
               
               
               Cow position:chr29:31926242-31926561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:14-360
               
               
               Cow position:chr29:27668617-27668938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:14-415
               
               
               Cow position:chr29:22175728-22175330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:15-219
               
               
               Cow position:chr29:44008734-44008933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):126, 60

               
               
               Conread position:15-312
               
               
               Cow position:chr29:3502617-3502308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:15-331
               
               
               Cow position:chr29:28195475-28195786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:15-373
               
               
               Cow position:chr29:9139467-9139099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:17-415
               
               
               Cow position:chr29:37785129-37785529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):165, 6

               
               
               Conread position:18-289
               
               
               Cow position:chr29:1395640-1395380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-328
               
               
               Cow position:chr29:1956049-1956353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:19-332
               
               
               Cow position:chr29:32521916-32521601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:20-252
               
               
               Cow position:chr29:29942686-29942918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 58

               
               
               Conread position:20-279
               
               
               Cow position:chr29:14484496-14484761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 87

               
               
               Conread position:20-307
               
               
               Cow position:chr29:37960933-37961220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):142, 59

               
               
               Conread position:20-318
               
               
               Cow position:chr29:4120895-4120592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-332
               
               
               Cow position:chr29:17066-17373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:21-277
               
               
               Cow position:chr29:732661-732404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-293
               
               
               Cow position:chr29:6286121-6286387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:21-311
               
               
               Cow position:chr29:25737374-25737664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 76

               
               
               Conread position:21-317
               
               
               Cow position:chr29:5892885-5892594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 90

               
               
               Conread position:21-318
               
               
               Cow position:chr29:31594087-31594369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr29:42849265-42848973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:21-332
               
               
               Cow position:chr29:12310048-12309729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 203

               
               
               Conread position:21-372
               
               
               Cow position:chr29:26981528-26981187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 58

               
               
               Conread position:22-318
               
               
               Cow position:chr29:2984930-2984633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:22-318
               
               
               Cow position:chr29:22613469-22613181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:23-317
               
               
               Cow position:chr29:20933750-20933452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:23-332
               
               
               Cow position:chr29:12004724-12005032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:24-279
               
               
               Cow position:chr29:463617-463869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 69

               
               
               Conread position:24-280
               
               
               Cow position:chr29:22778138-22778398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):115, 69

               
               
               Conread position:24-318
               
               
               Cow position:chr29:10058498-10058781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:24-318
               
               
               Cow position:chr29:25333422-25333707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):178, 55

               
               
               Conread position:25-282
               
               
               Cow position:chr29:40097004-40096738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:25-293
               
               
               Cow position:chr29:11705155-11704893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:25-311
               
               
               Cow position:chr29:44378378-44378665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:25-415
               
               
               Cow position:chr29:17607454-17607073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:26-318
               
               
               Cow position:chr29:4624961-4625247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):113, 78

               
               
               Conread position:26-318
               
               
               Cow position:chr29:10456527-10456806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):113, 56

               
               
               Conread position:26-318
               
               
               Cow position:chr29:19762306-19762018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:26-318
               
               
               Cow position:chr29:40891663-40891956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-415
               
               
               Cow position:chr29:9685959-9686352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:29-228
               
               
               Cow position:chr29:45384160-45383965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:29-307
               
               
               Cow position:chr29:11915859-11915573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:29-311
               
               
               Cow position:chr29:706917-707192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-311
               
               
               Cow position:chr29:16359653-16359366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:29-331
               
               
               Cow position:chr29:40583825-40583530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:30-245
               
               
               Cow position:chr29:24252269-24252061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:30-317
               
               
               Cow position:chr29:28273348-28273641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:30-333
               
               
               Cow position:chr29:35405757-35406063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:30-415
               
               
               Cow position:chr29:7665999-7666372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:32-334
               
               
               Cow position:chr29:30812781-30812480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:33-293
               
               
               Cow position:chr29:39643204-39642947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):149, 52

               
               
               Conread position:35-318
               
               
               Cow position:chr29:8669392-8669101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):103, 58

               
               
               Conread position:35-432
               
               
               Cow position:chr29:44901677-44902062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:37-356
               
               
               Cow position:chr29:94533-94837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:38-334
               
               
               Cow position:chr29:2522588-2522308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):215, 55

               
               
               Conread position:38-412
               
               
               Cow position:chr29:11685030-11684665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:39-226
               
               
               Cow position:chr29:12025445-12025629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:39-241
               
               
               Cow position:chr29:3538884-3539093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:39-250
               
               
               Cow position:chr29:4334748-4334541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 54

               
               
               Conread position:39-284
               
               
               Cow position:chr29:2533081-2532841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):180, 46

               
               
               Conread position:40-318
               
               
               Cow position:chr29:20178113-20178379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):145, 39

               
               
               Conread position:40-318
               
               
               Cow position:chr29:26778904-26778630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):190, 61

               
               
               Conread position:40-423
               
               
               Cow position:chr29:9078542-9078928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:41-235
               
               
               Cow position:chr29:25432419-25432236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:42-318
               
               
               Cow position:chr29:35738253-35738524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:43-205
               
               
               Cow position:chr29:18579992-18580152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:44-296
               
               
               Cow position:chr29:34744603-34744849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):140, 49

               
               
               Conread position:45-290
               
               
               Cow position:chr29:42886407-42886154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:45-415
               
               
               Cow position:chr29:10653358-10652996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 48

               
               
               Conread position:46-231
               
               
               Cow position:chr29:30188322-30188500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr29:26735043-26734779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:49-359
               
               
               Cow position:chr29:11696542-11696239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):90, 39

               
               
               Conread position:50-329
               
               
               Cow position:chr29:42771666-42771397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:51-318
               
               
               Cow position:chr29:24197631-24197885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:51-332
               
               
               Cow position:chr29:603308-603576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:52-415
               
               
               Cow position:chr29:24345438-24345807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:55-296
               
               
               Cow position:chr29:19508960-19508728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:55-318
               
               
               Cow position:chr29:4194100-4194375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):37, 157

               
               
               Conread position:55-330
               
               
               Cow position:chr29:27008128-27007853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:56-263
               
               
               Cow position:chr29:10818429-10818636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:57-240
               
               
               Cow position:chr29:456784-456966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:57-326
               
               
               Cow position:chr29:26335367-26335640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:62-413
               
               
               Cow position:chr29:37292778-37292432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:63-318
               
               
               Cow position:chr29:35281496-35281249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:64-413
               
               
               Cow position:chr29:8125591-8125934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:66-332
               
               
               Cow position:chr29:2644304-2644573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:67-317
               
               
               Cow position:chr29:585278-585029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:67-332
               
               
               Cow position:chr29:35636426-35636156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:73-318
               
               
               Cow position:chr29:3503044-3502807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:73-332
               
               
               Cow position:chr29:18338546-18338814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:83-296
               
               
               Cow position:chr29:22714740-22714960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:84-263
               
               
               Cow position:chr29:3100268-3100461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:84-280
               
               
               Cow position:chr29:44682115-44682307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-318
               
               
               Cow position:chr29:4480189-4480426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:87-235
               
               
               Cow position:chr29:10659356-10659507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:87-332
               
               
               Cow position:chr29:3396086-3395842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:89-264
               
               
               Cow position:chr29:709140-709323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:89-329
               
               
               Cow position:chr29:7407906-7408154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:90-326
               
               
               Cow position:chr29:12798898-12798668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:91-317
               
               
               Cow position:chr29:19389466-19389233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 170

               
               
               Conread position:91-332
               
               
               Cow position:chr29:26130761-26130515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:91-334
               
               
               Cow position:chr29:9512197-9511962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:92-317
               
               
               Cow position:chr29:21237090-21236863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:92-318
               
               
               Cow position:chr29:18212017-18212236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:93-339
               
               
               Cow position:chr29:23743078-23743312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:94-318
               
               
               Cow position:chr29:32963532-32963300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:94-318
               
               
               Cow position:chr29:34736495-34736719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:94-335
               
               
               Cow position:chr29:36586555-36586309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:96-307
               
               
               Cow position:chr29:6925985-6925775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:96-318
               
               
               Cow position:chr29:7040871-7041089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:96-318
               
               
               Cow position:chr29:34359833-34360048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:97-317
               
               
               Cow position:chr29:16757030-16756802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:100-316
               
               
               Cow position:chr29:4066054-4065838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:100-316
               
               
               Cow position:chr29:21000614-21000389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:100-318
               
               
               Cow position:chr29:5919355-5919579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:100-332
               
               
               Cow position:chr29:21529252-21529031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:100-415
               
               
               Cow position:chr29:2136143-2136442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:103-318
               
               
               Cow position:chr29:6636065-6635850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:104-330
               
               
               Cow position:chr29:29548206-29547978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:105-279
               
               
               Cow position:chr29:36037665-36037484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-296
               
               
               Cow position:chr29:19253856-19254055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-335
               
               
               Cow position:chr29:45650379-45650613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):34, 183

               
               
               Conread position:106-335
               
               
               Cow position:chr29:20626539-20626306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:107-328
               
               
               Cow position:chr29:5977151-5977385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:108-318
               
               
               Cow position:chr29:4805193-4804979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:109-326
               
               
               Cow position:chr29:8163898-8164125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:113-332
               
               
               Cow position:chr29:36404778-36404553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-368
               
               
               Cow position:chr29:21925166-21924906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 195

               
               
               Conread position:114-318
               
               
               Cow position:chr29:29312565-29312769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:116-339
               
               
               Cow position:chr29:13615684-13615918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 172

               
               
               Conread position:117-352
               
               
               Cow position:chr29:6472267-6472027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:127-326
               
               
               Cow position:chr29:20673857-20674068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-415
               
               
               Cow position:chr29:295880-296170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:128-332
               
               
               Cow position:chr29:1933613-1933826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:128-334
               
               
               Cow position:chr29:17109909-17109700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:128-335
               
               
               Cow position:chr29:17135786-17135580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 95

               
               
               Conread position:129-415
               
               
               Cow position:chr29:2188408-2188692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:136-334
               
               
               Cow position:chr29:5098828-5099032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 78

               
               
               Conread position:137-328
               
               
               Cow position:chr29:17543382-17543186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:141-332
               
               
               Cow position:chr29:32308395-32308592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:144-328
               
               
               Cow position:chr29:21265656-21265471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:146-332
               
               
               Cow position:chr29:18748659-18748852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:150-296
               
               
               Cow position:chr29:13458977-13458826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:150-332
               
               
               Cow position:chr29:686268-686459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:157-332
               
               
               Cow position:chr29:30367124-30367291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:163-354
               
               
               Cow position:chr29:2626023-2626216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:165-415
               
               
               Cow position:chr29:22339309-22339561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 167

               
               
               Conread position:167-318
               
               
               Cow position:chr29:29066327-29066172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:169-318
               
               
               Cow position:chr29:21665869-21665716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:169-364
               
               
               Cow position:chr29:41076124-41076328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:182-418
               
               
               Cow position:chr29:23568987-23569226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 176

               
               
               Conread position:230-356
               
               
               Cow position:chr29:43516847-43516973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-190
               
               
               Cow position:chr3:20993853-20993667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:1-225
               
               
               Cow position:chr3:70762083-70762302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:1-238
               
               
               Cow position:chr3:83797794-83798031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-246
               
               
               Cow position:chr3:59884031-59884272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):138, 85

               
               
               Conread position:1-279
               
               
               Cow position:chr3:27940104-27940365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:1-296
               
               
               Cow position:chr3:7337744-7338028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):236, 78

               
               
               Conread position:1-297
               
               
               Cow position:chr3:80084138-80084431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 61

               
               
               Conread position:1-311
               
               
               Cow position:chr3:25690833-25690516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:1-314
               
               
               Cow position:chr3:23448097-23448403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-314
               
               
               Cow position:chr3:60933457-60933143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:1-315
               
               
               Cow position:chr3:4457031-4457349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-318
               
               
               Cow position:chr3:44102008-44101705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:1-318
               
               
               Cow position:chr3:50768719-50768403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-318
               
               
               Cow position:chr3:67929220-67929542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:1-318
               
               
               Cow position:chr3:79220898-79220573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-318
               
               
               Cow position:chr3:81471057-81471376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:1-324
               
               
               Cow position:chr3:53270869-53270544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:1-326
               
               
               Cow position:chr3:24352900-24352597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:1-326
               
               
               Cow position:chr3:67704585-67704256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:1-330
               
               
               Cow position:chr3:77225157-77224832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):138, 78

               
               
               Conread position:1-332
               
               
               Cow position:chr3:18185115-18184778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:1-332
               
               
               Cow position:chr3:24548797-24549122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:1-333
               
               
               Cow position:chr3:7763695-7763372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:1-334
               
               
               Cow position:chr3:59000717-59001037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:1-335
               
               
               Cow position:chr3:61857546-61857203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:1-350
               
               
               Cow position:chr3:58540482-58540838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:2-207
               
               
               Cow position:chr3:15153728-15153531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:2-229
               
               
               Cow position:chr3:84596925-84597143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:2-296
               
               
               Cow position:chr3:73709084-73708795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:2-311
               
               
               Cow position:chr3:8924079-8923776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:2-314
               
               
               Cow position:chr3:29596427-29596121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):180, 76

               
               
               Conread position:3-202
               
               
               Cow position:chr3:32183982-32184177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):136, 73

               
               
               Conread position:3-289
               
               
               Cow position:chr3:41718428-41718141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:3-318
               
               
               Cow position:chr3:5419827-5420142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 34

               
               
               Conread position:3-318
               
               
               Cow position:chr3:61278945-61278630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):136, 46

               
               
               Conread position:3-318
               
               
               Cow position:chr3:75570416-75570717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:3-334
               
               
               Cow position:chr3:36174033-36174366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-393
               
               
               Cow position:chr3:58865436-58865815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):160, 34

               
               
               Conread position:3-415
               
               
               Cow position:chr3:26553679-26554079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 63

               
               
               Conread position:3-415
               
               
               Cow position:chr3:35852435-35852834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 80

               
               
               Conread position:4-187
               
               
               Cow position:chr3:80953682-80953506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):134, 10

               
               
               Conread position:4-268
               
               
               Cow position:chr3:76015327-76015073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):135, 89

               
               
               Conread position:4-317
               
               
               Cow position:chr3:42178188-42177885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:4-328
               
               
               Cow position:chr3:18498051-18497739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:4-332
               
               
               Cow position:chr3:5850894-5851217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):226, 75

               
               
               Conread position:4-396
               
               
               Cow position:chr3:56637700-56637313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:5-187
               
               
               Cow position:chr3:1517478-1517655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):131, 87

               
               
               Conread position:5-415
               
               
               Cow position:chr3:13517123-13517520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):134, 64

               
               
               Conread position:6-229
               
               
               Cow position:chr3:75853295-75853514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 43

               
               
               Conread position:7-138
               
               
               Cow position:chr3:622930-623058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:7-204
               
               
               Cow position:chr3:77582137-77581950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:7-219
               
               
               Cow position:chr3:31850345-31850543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:7-240
               
               
               Cow position:chr3:36375508-36375738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:7-245
               
               
               Cow position:chr3:74205776-74206009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 28

               
               
               Conread position:7-282
               
               
               Cow position:chr3:53222045-53221774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:7-290
               
               
               Cow position:chr3:48296730-48296461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:7-291
               
               
               Cow position:chr3:16752227-16752502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):223, 19

               
               
               Conread position:7-307
               
               
               Cow position:chr3:57754444-57754749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-310
               
               
               Cow position:chr3:69416749-69417056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-311
               
               
               Cow position:chr3:14632951-14633255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:7-311
               
               
               Cow position:chr3:74611596-74611293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-316
               
               
               Cow position:chr3:53592657-53592974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:7-318
               
               
               Cow position:chr3:2216400-2216084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:7-318
               
               
               Cow position:chr3:49460894-49461213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr3:50462369-50462066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr3:53046631-53046933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr3:55124248-55124554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr3:66900701-66901018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr3:73443060-73443363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):132, 22

               
               
               Conread position:7-318
               
               
               Cow position:chr3:77365258-77365570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 205

               
               
               Conread position:7-323
               
               
               Cow position:chr3:76138503-76138208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:7-326
               
               
               Cow position:chr3:37041451-37041145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-330
               
               
               Cow position:chr3:37452101-37451781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-331
               
               
               Cow position:chr3:28898191-28898511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:7-332
               
               
               Cow position:chr3:58968871-58969182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:7-340
               
               
               Cow position:chr3:67744596-67744926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-415
               
               
               Cow position:chr3:60892657-60892266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:8-189
               
               
               Cow position:chr3:74939600-74939414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:8-205
               
               
               Cow position:chr3:58973327-58973144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:8-240
               
               
               Cow position:chr3:70632052-70631824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:8-257
               
               
               Cow position:chr3:49140018-49140251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:8-290
               
               
               Cow position:chr3:52608213-52607935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):222, 85

               
               
               Conread position:8-317
               
               
               Cow position:chr3:32585181-32584883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:8-318
               
               
               Cow position:chr3:26904140-26903839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):182, 18

               
               
               Conread position:8-318
               
               
               Cow position:chr3:51146639-51146942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):224, 26

               
               
               Conread position:8-318
               
               
               Cow position:chr3:55010134-55010431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):131, 41

               
               
               Conread position:8-318
               
               
               Cow position:chr3:61840306-61840013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:8-318
               
               
               Cow position:chr3:66375350-66375045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 9

               
               
               Conread position:8-318
               
               
               Cow position:chr3:75057103-75057390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):241, 37

               
               
               Conread position:8-328
               
               
               Cow position:chr3:20471333-20471646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:8-362
               
               
               Cow position:chr3:56346-56689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:9-144
               
               
               Cow position:chr3:53703933-53704064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-153
               
               
               Cow position:chr3:65019835-65019973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-161
               
               
               Cow position:chr3:33693849-33693702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:9-171
               
               
               Cow position:chr3:72503866-72504023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:9-178
               
               
               Cow position:chr3:22510057-22509894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-179
               
               
               Cow position:chr3:84175793-84175959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-180
               
               
               Cow position:chr3:74846679-74846845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):155, 67

               
               
               Conread position:9-183
               
               
               Cow position:chr3:61116823-61116995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-185
               
               
               Cow position:chr3:60389794-60389628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-187
               
               
               Cow position:chr3:3889538-3889707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:9-187
               
               
               Cow position:chr3:15443699-15443870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 37

               
               
               Conread position:9-187
               
               
               Cow position:chr3:21014928-21015103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 96

               
               
               Conread position:9-187
               
               
               Cow position:chr3:73820339-73820511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 64

               
               
               Conread position:9-195
               
               
               Cow position:chr3:22221357-22221170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:9-198
               
               
               Cow position:chr3:70333935-70334117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 65

               
               
               Conread position:9-202
               
               
               Cow position:chr3:26874620-26874433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-203
               
               
               Cow position:chr3:34871597-34871411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-203
               
               
               Cow position:chr3:76267945-76268139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-205
               
               
               Cow position:chr3:79645406-79645603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:9-209
               
               
               Cow position:chr3:48810615-48810800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 84

               
               
               Conread position:9-210
               
               
               Cow position:chr3:30222221-30222021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:9-221
               
               
               Cow position:chr3:18144088-18144292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:9-221
               
               
               Cow position:chr3:55819788-55819572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):94, 80

               
               
               Conread position:9-222
               
               
               Cow position:chr3:19792935-19792716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-222
               
               
               Cow position:chr3:62046694-62046486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:9-225
               
               
               Cow position:chr3:76922633-76922842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:9-227
               
               
               Cow position:chr3:26982088-26981883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-227
               
               
               Cow position:chr3:35153647-35153440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):180, 72

               
               
               Conread position:9-230
               
               
               Cow position:chr3:57274089-57273882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-231
               
               
               Cow position:chr3:74502295-74502507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-235
               
               
               Cow position:chr3:63269253-63269036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-236
               
               
               Cow position:chr3:34669703-34669918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-236
               
               
               Cow position:chr3:59035070-59034843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:9-237
               
               
               Cow position:chr3:13890507-13890276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-240
               
               
               Cow position:chr3:4319741-4319520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:9-240
               
               
               Cow position:chr3:15506478-15506257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:9-240
               
               
               Cow position:chr3:27696948-27697173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-240
               
               
               Cow position:chr3:53094901-53095134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-240
               
               
               Cow position:chr3:67698306-67698085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:9-244
               
               
               Cow position:chr3:53875735-53875957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:9-244
               
               
               Cow position:chr3:76387578-76387794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:9-245
               
               
               Cow position:chr3:10896852-10896634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-245
               
               
               Cow position:chr3:59621618-59621837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-250
               
               
               Cow position:chr3:78896677-78896446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):175, 79

               
               
               Conread position:9-254
               
               
               Cow position:chr3:55318867-55319110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:9-256
               
               
               Cow position:chr3:12705513-12705757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-257
               
               
               Cow position:chr3:76713295-76713537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-263
               
               
               Cow position:chr3:24468355-24468596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-264
               
               
               Cow position:chr3:21547070-21547324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):170, 78

               
               
               Conread position:9-264
               
               
               Cow position:chr3:68145813-68146058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-266
               
               
               Cow position:chr3:83215292-83215029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-275
               
               
               Cow position:chr3:67930156-67930411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-279
               
               
               Cow position:chr3:34937874-34937603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-288
               
               
               Cow position:chr3:23444858-23445136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:9-289
               
               
               Cow position:chr3:8393972-8393692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:9-289
               
               
               Cow position:chr3:80564996-80564713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-290
               
               
               Cow position:chr3:58767293-58767031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-290
               
               
               Cow position:chr3:61171478-61171758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-291
               
               
               Cow position:chr3:13507498-13507214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-293
               
               
               Cow position:chr3:5044783-5045061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 54

               
               
               Conread position:9-293
               
               
               Cow position:chr3:54903594-54903317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-294
               
               
               Cow position:chr3:83201494-83201781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:9-295
               
               
               Cow position:chr3:116219-115955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:9-296
               
               
               Cow position:chr3:18725614-18725888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):233, 62

               
               
               Conread position:9-296
               
               
               Cow position:chr3:22820601-22820315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-296
               
               
               Cow position:chr3:56476712-56476428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 84

               
               
               Conread position:9-296
               
               
               Cow position:chr3:61144124-61143839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-302
               
               
               Cow position:chr3:30008878-30009170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 103

               
               
               Conread position:9-303
               
               
               Cow position:chr3:51234066-51234357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-303
               
               
               Cow position:chr3:52147621-52147941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 175

               
               
               Conread position:9-304
               
               
               Cow position:chr3:75080793-75080504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-306
               
               
               Cow position:chr3:50614671-50614375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-306
               
               
               Cow position:chr3:73460997-73460715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):222, 84

               
               
               Conread position:9-307
               
               
               Cow position:chr3:52017801-52017491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-307
               
               
               Cow position:chr3:59474152-59473847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):202, 98

               
               
               Conread position:9-307
               
               
               Cow position:chr3:72391112-72390816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-307
               
               
               Cow position:chr3:73395146-73394851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:9-308
               
               
               Cow position:chr3:72131268-72131564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-309
               
               
               Cow position:chr3:22887899-22888184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):172, 84

               
               
               Conread position:9-309
               
               
               Cow position:chr3:80818747-80818462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):233, 84

               
               
               Conread position:9-311
               
               
               Cow position:chr3:13301820-13302125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:9-311
               
               
               Cow position:chr3:45881928-45881640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):230, 88

               
               
               Conread position:9-311
               
               
               Cow position:chr3:51578291-51578590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:9-314
               
               
               Cow position:chr3:70899921-70899628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:9-316
               
               
               Cow position:chr3:17456238-17456543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-316
               
               
               Cow position:chr3:39066362-39066059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):181, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr3:2025228-2024909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:9-317
               
               
               Cow position:chr3:53384250-53384558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:9-317
               
               
               Cow position:chr3:64280900-64281211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:9-317
               
               
               Cow position:chr3:66292146-66292453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr3:2506448-2506755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr3:5374358-5374059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):221, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr3:6873222-6873521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr3:14263423-14263116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:9-318
               
               
               Cow position:chr3:17222112-17222420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr3:26066028-26065725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:9-318
               
               
               Cow position:chr3:29887389-29887700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:9-318
               
               
               Cow position:chr3:30180116-30179806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr3:38347220-38346925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):171, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr3:43528202-43528513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:9-318
               
               
               Cow position:chr3:48252915-48252621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr3:49482686-49482980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr3:49650418-49650104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr3:53739155-53739467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr3:56059841-56059531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr3:57624494-57624187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr3:59608533-59608232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):154, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr3:65058728-65058426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-318
               
               
               Cow position:chr3:71231425-71231130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-318
               
               
               Cow position:chr3:71497108-71497422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr3:75158391-75158089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-318
               
               
               Cow position:chr3:82056089-82056393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:9-319
               
               
               Cow position:chr3:38691376-38691682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:9-323
               
               
               Cow position:chr3:54946161-54945844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-325
               
               
               Cow position:chr3:27545789-27546116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-326
               
               
               Cow position:chr3:26219021-26219345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-326
               
               
               Cow position:chr3:37186857-37186552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):233, 70

               
               
               Conread position:9-326
               
               
               Cow position:chr3:54435006-54434690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:9-328
               
               
               Cow position:chr3:27532624-27532948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-328
               
               
               Cow position:chr3:36100868-36100542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-328
               
               
               Cow position:chr3:55189723-55190036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:9-328
               
               
               Cow position:chr3:70401926-70401617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-329
               
               
               Cow position:chr3:70334665-70334990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-330
               
               
               Cow position:chr3:17934908-17935211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-330
               
               
               Cow position:chr3:31309324-31309644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-330
               
               
               Cow position:chr3:52863154-52863471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:9-330
               
               
               Cow position:chr3:55272015-55272330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-331
               
               
               Cow position:chr3:70565708-70566027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-331
               
               
               Cow position:chr3:80072159-80071828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr3:6690030-6689701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr3:7566387-7566709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 129

               
               
               Conread position:9-332
               
               
               Cow position:chr3:10958210-10958518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr3:17694975-17695296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):158, 29

               
               
               Conread position:9-332
               
               
               Cow position:chr3:33698761-33698431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr3:53113205-53112878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-332
               
               
               Cow position:chr3:53572722-53573040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-332
               
               
               Cow position:chr3:53910138-53909824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-332
               
               
               Cow position:chr3:59101857-59101545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr3:68587052-68586748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:9-332
               
               
               Cow position:chr3:72676121-72675797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-333
               
               
               Cow position:chr3:14552905-14552587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-334
               
               
               Cow position:chr3:45647710-45647383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-334
               
               
               Cow position:chr3:64010782-64011107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:9-335
               
               
               Cow position:chr3:14465676-14465997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):128, 103

               
               
               Conread position:9-335
               
               
               Cow position:chr3:14626120-14626443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:9-335
               
               
               Cow position:chr3:23169036-23169363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-335
               
               
               Cow position:chr3:55970537-55970214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:9-339
               
               
               Cow position:chr3:20437626-20437944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-346
               
               
               Cow position:chr3:73759487-73759825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:9-348
               
               
               Cow position:chr3:9641598-9641258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:9-352
               
               
               Cow position:chr3:5097237-5096893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-352
               
               
               Cow position:chr3:68881091-68881419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-356
               
               
               Cow position:chr3:63179887-63179554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-362
               
               
               Cow position:chr3:23471429-23471788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 139

               
               
               Conread position:9-362
               
               
               Cow position:chr3:68707983-68708321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-364
               
               
               Cow position:chr3:17957497-17957145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-368
               
               
               Cow position:chr3:3985352-3985002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-413
               
               
               Cow position:chr3:59649288-59648900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:9-414
               
               
               Cow position:chr3:28908173-28908567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-414
               
               
               Cow position:chr3:66609814-66610202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:9-415
               
               
               Cow position:chr3:2675059-2674664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr3:4050223-4049838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:9-415
               
               
               Cow position:chr3:17936809-17937216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr3:51033396-51032980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 308

               
               
               Conread position:9-415
               
               
               Cow position:chr3:54781973-54782376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:9-415
               
               
               Cow position:chr3:57577727-57577335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr3:60597571-60597189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr3:65237054-65236654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr3:65413248-65413652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-415
               
               
               Cow position:chr3:73961667-73962044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:9-415
               
               
               Cow position:chr3:79884456-79884851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-415
               
               
               Cow position:chr3:80053512-80053898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr3:82461209-82460807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:9-435
               
               
               Cow position:chr3:18459498-18459905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:10-184
               
               
               Cow position:chr3:13380246-13380424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 175

               
               
               Conread position:10-212
               
               
               Cow position:chr3:15992747-15992548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:10-232
               
               
               Cow position:chr3:75687408-75687625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-318
               
               
               Cow position:chr3:42489272-42489582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:10-318
               
               
               Cow position:chr3:57764247-57763947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):129, 24

               
               
               Conread position:10-318
               
               
               Cow position:chr3:79902525-79902227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:10-343
               
               
               Cow position:chr3:72458-72114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:10-415
               
               
               Cow position:chr3:55085140-55085555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:11-185
               
               
               Cow position:chr3:3656542-3656371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:11-191
               
               
               Cow position:chr3:43727107-43726931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-200
               
               
               Cow position:chr3:19793562-19793747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:11-206
               
               
               Cow position:chr3:84199704-84199519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:11-225
               
               
               Cow position:chr3:81359079-81359292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-240
               
               
               Cow position:chr3:36446690-36446911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:11-240
               
               
               Cow position:chr3:38828787-38828572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:11-241
               
               
               Cow position:chr3:15751685-15751917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:11-263
               
               
               Cow position:chr3:16656467-16656702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):221, 24

               
               
               Conread position:11-263
               
               
               Cow position:chr3:74134732-74134484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:11-264
               
               
               Cow position:chr3:26960560-26960817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 63

               
               
               Conread position:11-293
               
               
               Cow position:chr3:52652057-52652325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-294
               
               
               Cow position:chr3:44932544-44932256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-295
               
               
               Cow position:chr3:43233534-43233250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-301
               
               
               Cow position:chr3:22232626-22232906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:11-307
               
               
               Cow position:chr3:15655118-15655417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:11-311
               
               
               Cow position:chr3:54771034-54770735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:11-316
               
               
               Cow position:chr3:14801772-14801477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:11-317
               
               
               Cow position:chr3:68342220-68342529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr3:210347-210046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 73

               
               
               Conread position:11-318
               
               
               Cow position:chr3:19708080-19708375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-318
               
               
               Cow position:chr3:30463144-30463442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):231, 40

               
               
               Conread position:11-318
               
               
               Cow position:chr3:31206904-31206596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:11-318
               
               
               Cow position:chr3:62292090-62292392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:11-318
               
               
               Cow position:chr3:79292856-79292558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:11-326
               
               
               Cow position:chr3:65969195-65968871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:11-328
               
               
               Cow position:chr3:46901227-46900909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:11-330
               
               
               Cow position:chr3:64536532-64536830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 60

               
               
               Conread position:11-332
               
               
               Cow position:chr3:15228795-15229109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):170, 82

               
               
               Conread position:11-334
               
               
               Cow position:chr3:80468648-80468941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-335
               
               
               Cow position:chr3:3032435-3032105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):127, 36

               
               
               Conread position:11-343
               
               
               Cow position:chr3:77271250-77271569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:11-349
               
               
               Cow position:chr3:63203463-63203138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 61

               
               
               Conread position:11-353
               
               
               Cow position:chr3:74878561-74878915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-364
               
               
               Cow position:chr3:48629560-48629908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:11-368
               
               
               Cow position:chr3:58131024-58130674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):228, 90

               
               
               Conread position:11-411
               
               
               Cow position:chr3:63147122-63147520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 69

               
               
               Conread position:11-415
               
               
               Cow position:chr3:10347379-10346982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:11-415
               
               
               Cow position:chr3:48241642-48241256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:11-415
               
               
               Cow position:chr3:49382977-49382587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):177, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr3:51255811-51255409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:11-415
               
               
               Cow position:chr3:53588355-53588757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:12-318
               
               
               Cow position:chr3:81277671-81277980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:12-330
               
               
               Cow position:chr3:61323352-61323064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:12-332
               
               
               Cow position:chr3:27289966-27289647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):125, 67

               
               
               Conread position:13-300
               
               
               Cow position:chr3:11711991-11711695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):126, 90

               
               
               Conread position:13-341
               
               
               Cow position:chr3:17742549-17742209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 69

               
               
               Conread position:14-220
               
               
               Cow position:chr3:58765050-58765253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-240
               
               
               Cow position:chr3:55712465-55712235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:14-290
               
               
               Cow position:chr3:18686931-18686668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-291
               
               
               Cow position:chr3:55947609-55947326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:14-301
               
               
               Cow position:chr3:71238179-71237898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-316
               
               
               Cow position:chr3:12711890-12712197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:14-318
               
               
               Cow position:chr3:15954060-15954353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 92

               
               
               Conread position:14-318
               
               
               Cow position:chr3:38864150-38863837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:14-342
               
               
               Cow position:chr3:73467656-73467319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:14-368
               
               
               Cow position:chr3:54050006-54050345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):172, 41

               
               
               Conread position:14-396
               
               
               Cow position:chr3:83815762-83816147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 90

               
               
               Conread position:14-415
               
               
               Cow position:chr3:15388244-15387840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:14-415
               
               
               Cow position:chr3:39171461-39171869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 36

               
               
               Conread position:15-318
               
               
               Cow position:chr3:68627663-68627951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:16-240
               
               
               Cow position:chr3:55778060-55777843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:16-279
               
               
               Cow position:chr3:15684898-15685154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):214, 64

               
               
               Conread position:16-288
               
               
               Cow position:chr3:55106416-55106689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:16-373
               
               
               Cow position:chr3:55373546-55373903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:16-415
               
               
               Cow position:chr3:5100749-5101125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:17-326
               
               
               Cow position:chr3:77227342-77227034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:18-354
               
               
               Cow position:chr3:13329757-13330084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:19-237
               
               
               Cow position:chr3:61009413-61009626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:19-264
               
               
               Cow position:chr3:2198903-2198660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:19-317
               
               
               Cow position:chr3:64172460-64172170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):222, 68

               
               
               Conread position:19-318
               
               
               Cow position:chr3:12255501-12255204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:19-328
               
               
               Cow position:chr3:12287249-12286949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):213, 16

               
               
               Conread position:19-332
               
               
               Cow position:chr3:33327729-33327417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:19-332
               
               
               Cow position:chr3:42480639-42480334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 55

               
               
               Conread position:19-334
               
               
               Cow position:chr3:66708046-66708365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:19-337
               
               
               Cow position:chr3:18458638-18458951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:19-356
               
               
               Cow position:chr3:74699362-74699709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 55

               
               
               Conread position:20-246
               
               
               Cow position:chr3:26739395-26739617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:20-256
               
               
               Cow position:chr3:39328419-39328186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:20-264
               
               
               Cow position:chr3:66866382-66866622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 41

               
               
               Conread position:20-304
               
               
               Cow position:chr3:74620970-74621259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:20-316
               
               
               Cow position:chr3:45524286-45523990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:20-318
               
               
               Cow position:chr3:13899428-13899729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):119, 58

               
               
               Conread position:20-318
               
               
               Cow position:chr3:74500262-74499948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-333
               
               
               Cow position:chr3:22089258-22089573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:20-333
               
               
               Cow position:chr3:76172650-76172953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:20-335
               
               
               Cow position:chr3:42423307-42423624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:20-415
               
               
               Cow position:chr3:59691910-59691539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):209, 65

               
               
               Conread position:21-231
               
               
               Cow position:chr3:74079618-74079824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:21-299
               
               
               Cow position:chr3:41328459-41328198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:21-308
               
               
               Cow position:chr3:71430186-71430478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-318
               
               
               Cow position:chr3:22171205-22170913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 16

               
               
               Conread position:21-318
               
               
               Cow position:chr3:59799266-59798978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:21-331
               
               
               Cow position:chr3:69961700-69962000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:21-332
               
               
               Cow position:chr3:5365695-5365396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 62

               
               
               Conread position:21-332
               
               
               Cow position:chr3:70896066-70895756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:21-332
               
               
               Cow position:chr3:83491104-83490786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):116, 66

               
               
               Conread position:21-410
               
               
               Cow position:chr3:29807481-29807103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:21-413
               
               
               Cow position:chr3:4461466-4461851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:22-236
               
               
               Cow position:chr3:46006001-46006217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:22-311
               
               
               Cow position:chr3:525363-525085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:22-317
               
               
               Cow position:chr3:14601694-14601988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 65

               
               
               Conread position:22-318
               
               
               Cow position:chr3:16157693-16157405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):167, 63

               
               
               Conread position:22-326
               
               
               Cow position:chr3:21340944-21341247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:22-328
               
               
               Cow position:chr3:52650510-52650816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:22-330
               
               
               Cow position:chr3:46341486-46341173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:22-332
               
               
               Cow position:chr3:31046934-31047232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:22-415
               
               
               Cow position:chr3:37599411-37599781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:23-277
               
               
               Cow position:chr3:27274547-27274298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:23-293
               
               
               Cow position:chr3:25755040-25754785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:23-296
               
               
               Cow position:chr3:14625374-14625642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:23-296
               
               
               Cow position:chr3:67165935-67165658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:23-318
               
               
               Cow position:chr3:5416204-5416507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):166, 70

               
               
               Conread position:23-318
               
               
               Cow position:chr3:36671975-36672281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):116, 78

               
               
               Conread position:23-318
               
               
               Cow position:chr3:59451609-59451319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):158, 7

               
               
               Conread position:23-347
               
               
               Cow position:chr3:21081360-21081692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:23-369
               
               
               Cow position:chr3:59333787-59333448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:24-231
               
               
               Cow position:chr3:70609647-70609441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 89

               
               
               Conread position:24-321
               
               
               Cow position:chr3:15051933-15052216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 68

               
               
               Conread position:25-235
               
               
               Cow position:chr3:14598957-14598761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:25-314
               
               
               Cow position:chr3:1830559-1830835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:25-416
               
               
               Cow position:chr3:61539820-61539431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:26-245
               
               
               Cow position:chr3:83845929-83845705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 81

               
               
               Conread position:26-259
               
               
               Cow position:chr3:75045862-75046082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:26-307
               
               
               Cow position:chr3:72019132-72018854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):159, 62

               
               
               Conread position:26-329
               
               
               Cow position:chr3:8393363-8393059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-368
               
               
               Cow position:chr3:54739870-54740203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:27-318
               
               
               Cow position:chr3:34270929-34270655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 52

               
               
               Conread position:27-332
               
               
               Cow position:chr3:49218302-49218597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:27-415
               
               
               Cow position:chr3:18067151-18066769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:29-187
               
               
               Cow position:chr3:71238485-71238332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-234
               
               
               Cow position:chr3:24872721-24872531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:29-276
               
               
               Cow position:chr3:15192596-15192329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:29-326
               
               
               Cow position:chr3:65800602-65800311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:29-344
               
               
               Cow position:chr3:80581672-80581369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:29-350
               
               
               Cow position:chr3:42594642-42594967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 45

               
               
               Conread position:29-415
               
               
               Cow position:chr3:80081803-80082182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):63, 184

               
               
               Conread position:30-240
               
               
               Cow position:chr3:3638194-3637992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:30-240
               
               
               Cow position:chr3:66883931-66884135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-288
               
               
               Cow position:chr3:8061138-8060886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-310
               
               
               Cow position:chr3:45648144-45647871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:30-317
               
               
               Cow position:chr3:69849498-69849777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):100, 58

               
               
               Conread position:30-318
               
               
               Cow position:chr3:68582995-68583278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-318
               
               
               Cow position:chr3:73764186-73764469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:30-333
               
               
               Cow position:chr3:8147658-8147954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:31-290
               
               
               Cow position:chr3:80740574-80740324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:31-318
               
               
               Cow position:chr3:23877005-23876722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:31-318
               
               
               Cow position:chr3:56703843-56704130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:32-318
               
               
               Cow position:chr3:59515111-59514835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:32-334
               
               
               Cow position:chr3:29360139-29360427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):179, 56

               
               
               Conread position:34-334
               
               
               Cow position:chr3:9843592-9843292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:34-352
               
               
               Cow position:chr3:31933090-31933412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 44

               
               
               Conread position:35-218
               
               
               Cow position:chr3:23920425-23920602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:35-258
               
               
               Cow position:chr3:34556229-34556455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:35-296
               
               
               Cow position:chr3:28692422-28692684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:35-311
               
               
               Cow position:chr3:17450935-17451203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):195, 57

               
               
               Conread position:35-327
               
               
               Cow position:chr3:84000617-84000326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:35-356
               
               
               Cow position:chr3:54862408-54862738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:35-360
               
               
               Cow position:chr3:17895848-17895536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:36-245
               
               
               Cow position:chr3:15859663-15859865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:37-240
               
               
               Cow position:chr3:21693951-21693751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:37-346
               
               
               Cow position:chr3:4031976-4031664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:38-209
               
               
               Cow position:chr3:77729457-77729289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:38-245
               
               
               Cow position:chr3:7940552-7940755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:38-304
               
               
               Cow position:chr3:18393393-18393646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:38-325
               
               
               Cow position:chr3:62884209-62883919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:39-330
               
               
               Cow position:chr3:364212-364507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:39-415
               
               
               Cow position:chr3:20802620-20802993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:41-318
               
               
               Cow position:chr3:42483906-42483624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:43-215
               
               
               Cow position:chr3:53192430-53192591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:43-318
               
               
               Cow position:chr3:44622890-44623173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:43-326
               
               
               Cow position:chr3:46160849-46161129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:43-331
               
               
               Cow position:chr3:1133081-1133384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:43-332
               
               
               Cow position:chr3:57553852-57554137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:43-415
               
               
               Cow position:chr3:27544339-27544699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:44-315
               
               
               Cow position:chr3:79207991-79208276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:44-317
               
               
               Cow position:chr3:2392967-2393241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:44-318
               
               
               Cow position:chr3:74409480-74409219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:44-357
               
               
               Cow position:chr3:78894330-78894629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 44

               
               
               Conread position:45-332
               
               
               Cow position:chr3:61678699-61678401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:46-235
               
               
               Cow position:chr3:25060073-25059888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:46-291
               
               
               Cow position:chr3:44534766-44535015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:46-318
               
               
               Cow position:chr3:67161937-67161656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:47-264
               
               
               Cow position:chr3:21050845-21051060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:47-291
               
               
               Cow position:chr3:59271535-59271302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:47-318
               
               
               Cow position:chr3:24304923-24305181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:47-318
               
               
               Cow position:chr3:63860897-63861177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):133, 46

               
               
               Conread position:47-318
               
               
               Cow position:chr3:82657095-82657361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:47-326
               
               
               Cow position:chr3:41366988-41367267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:47-415
               
               
               Cow position:chr3:6265509-6265141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:48-301
               
               
               Cow position:chr3:8604026-8604273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:49-253
               
               
               Cow position:chr3:59885383-59885178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:49-307
               
               
               Cow position:chr3:13577187-13577449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:49-318
               
               
               Cow position:chr3:81940248-81939975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 50

               
               
               Conread position:50-326
               
               
               Cow position:chr3:59597181-59596920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:51-256
               
               
               Cow position:chr3:3062556-3062348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:55-261
               
               
               Cow position:chr3:55062887-55063087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:55-296
               
               
               Cow position:chr3:48578825-48578587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:55-315
               
               
               Cow position:chr3:17952642-17952383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-318
               
               
               Cow position:chr3:47284820-47284562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 17

               
               
               Conread position:55-318
               
               
               Cow position:chr3:49731655-49731913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-332
               
               
               Cow position:chr3:29813229-29812952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-332
               
               
               Cow position:chr3:68648149-68647870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:55-340
               
               
               Cow position:chr3:30701294-30701022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:55-341
               
               
               Cow position:chr3:73590010-73590296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:55-352
               
               
               Cow position:chr3:45744686-45744403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:55-415
               
               
               Cow position:chr3:2903309-2903663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:56-202
               
               
               Cow position:chr3:27247206-27247346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:56-227
               
               
               Cow position:chr3:16891295-16891117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:56-236
               
               
               Cow position:chr3:27212347-27212172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:56-291
               
               
               Cow position:chr3:49787397-49787157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:56-307
               
               
               Cow position:chr3:49231001-49230746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:56-318
               
               
               Cow position:chr3:5899808-5899550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:56-328
               
               
               Cow position:chr3:30418119-30417843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:57-301
               
               
               Cow position:chr3:4087177-4087425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:57-317
               
               
               Cow position:chr3:81371630-81371381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:57-318
               
               
               Cow position:chr3:19789132-19789395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:57-325
               
               
               Cow position:chr3:77496811-77496534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:57-327
               
               
               Cow position:chr3:2396797-2397068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:58-353
               
               
               Cow position:chr3:78945850-78946150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:58-415
               
               
               Cow position:chr3:20663545-20663903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:62-318
               
               
               Cow position:chr3:55460519-55460777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:62-326
               
               
               Cow position:chr3:34315977-34316248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:62-346
               
               
               Cow position:chr3:23945079-23944793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:63-305
               
               
               Cow position:chr3:2008247-2008006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:64-243
               
               
               Cow position:chr3:57789608-57789431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:64-318
               
               
               Cow position:chr3:31903122-31903384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:65-254
               
               
               Cow position:chr3:65381124-65380946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:67-333
               
               
               Cow position:chr3:58951587-58951330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:72-328
               
               
               Cow position:chr3:16004015-16004272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:73-333
               
               
               Cow position:chr3:18763862-18763603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:74-332
               
               
               Cow position:chr3:27286203-27285935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:74-332
               
               
               Cow position:chr3:78201241-78200977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:79-326
               
               
               Cow position:chr3:33252907-33253166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 242

               
               
               Conread position:80-243
               
               
               Cow position:chr3:78739821-78739664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:80-405
               
               
               Cow position:chr3:82360006-82359678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:82-405
               
               
               Cow position:chr3:13118303-13117992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:82-414
               
               
               Cow position:chr3:19717127-19717454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 74

               
               
               Conread position:83-279
               
               
               Cow position:chr3:80922538-80922331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:83-318
               
               
               Cow position:chr3:74234154-74233924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):56, 74

               
               
               Conread position:83-332
               
               
               Cow position:chr3:30358673-30358924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:83-332
               
               
               Cow position:chr3:45534333-45534589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:84-288
               
               
               Cow position:chr3:55835862-55836075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:84-318
               
               
               Cow position:chr3:32399293-32399531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr3:72777215-72776950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:84-333
               
               
               Cow position:chr3:53790576-53790835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:84-415
               
               
               Cow position:chr3:49793355-49793048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:84-415
               
               
               Cow position:chr3:61190965-61191282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:85-336
               
               
               Cow position:chr3:73777245-73776984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:86-331
               
               
               Cow position:chr3:31501309-31501064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):144, 15

               
               
               Conread position:87-290
               
               
               Cow position:chr3:15752675-15752876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:87-314
               
               
               Cow position:chr3:4332325-4332091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:87-332
               
               
               Cow position:chr3:48363036-48362793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:87-338
               
               
               Cow position:chr3:79148311-79148572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:87-350
               
               
               Cow position:chr3:19006618-19006359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:88-296
               
               
               Cow position:chr3:45307891-45307680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:88-328
               
               
               Cow position:chr3:67044140-67044381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:88-331
               
               
               Cow position:chr3:19198634-19198392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:88-412
               
               
               Cow position:chr3:58174865-58174531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 157

               
               
               Conread position:89-318
               
               
               Cow position:chr3:45690913-45691141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:89-332
               
               
               Cow position:chr3:78077147-78076899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:89-358
               
               
               Cow position:chr3:32870105-32869833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:91-290
               
               
               Cow position:chr3:74088213-74088422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:91-318
               
               
               Cow position:chr3:70467870-70468079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:91-332
               
               
               Cow position:chr3:16547632-16547386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:92-279
               
               
               Cow position:chr3:77006446-77006268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:92-318
               
               
               Cow position:chr3:3164540-3164772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-318
               
               
               Cow position:chr3:23408397-23408618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:92-332
               
               
               Cow position:chr3:62826664-62826913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-333
               
               
               Cow position:chr3:35975153-35975396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:92-333
               
               
               Cow position:chr3:59630547-59630791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 121

               
               
               Conread position:92-368
               
               
               Cow position:chr3:77467891-77467606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-415
               
               
               Cow position:chr3:6853551-6853868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:92-415
               
               
               Cow position:chr3:75727629-75727954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 252

               
               
               Conread position:92-415
               
               
               Cow position:chr3:84153276-84152950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:93-415
               
               
               Cow position:chr3:15057656-15057975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:95-240
               
               
               Cow position:chr3:10173181-10173325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:95-291
               
               
               Cow position:chr3:2680468-2680262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:95-415
               
               
               Cow position:chr3:59588470-59588154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:96-264
               
               
               Cow position:chr3:60265292-60265458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:96-291
               
               
               Cow position:chr3:7365933-7366124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:96-296
               
               
               Cow position:chr3:58158520-58158721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):143, 23

               
               
               Conread position:96-326
               
               
               Cow position:chr3:69750752-69750985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:96-332
               
               
               Cow position:chr3:11020073-11019828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:97-296
               
               
               Cow position:chr3:16333749-16333552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:97-307
               
               
               Cow position:chr3:49337673-49337465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:97-326
               
               
               Cow position:chr3:58285949-58286182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:98-330
               
               
               Cow position:chr3:22872098-22872340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:98-350
               
               
               Cow position:chr3:43007453-43007714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:99-279
               
               
               Cow position:chr3:29334565-29334751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:100-318
               
               
               Cow position:chr3:7678614-7678397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:100-318
               
               
               Cow position:chr3:42588303-42588073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:100-355
               
               
               Cow position:chr3:15158990-15158728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:101-296
               
               
               Cow position:chr3:26970773-26970571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-331
               
               
               Cow position:chr3:66116165-66116401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 202

               
               
               Conread position:102-318
               
               
               Cow position:chr3:83921142-83920922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:103-279
               
               
               Cow position:chr3:4861627-4861452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:103-317
               
               
               Cow position:chr3:56704600-56704812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:104-318
               
               
               Cow position:chr3:15661757-15661977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:104-328
               
               
               Cow position:chr3:25691697-25691463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:105-318
               
               
               Cow position:chr3:52418888-52418689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:105-332
               
               
               Cow position:chr3:20129886-20129651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-332
               
               
               Cow position:chr3:51604663-51604897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:105-413
               
               
               Cow position:chr3:31419643-31419333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-415
               
               
               Cow position:chr3:28675932-28675624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 236

               
               
               Conread position:105-415
               
               
               Cow position:chr3:79591940-79592253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 247

               
               
               Conread position:106-277
               
               
               Cow position:chr3:17447671-17447843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:106-287
               
               
               Cow position:chr3:30055506-30055691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:106-307
               
               
               Cow position:chr3:61467550-61467340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:106-317
               
               
               Cow position:chr3:55445303-55445092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:106-318
               
               
               Cow position:chr3:59208755-59208538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-332
               
               
               Cow position:chr3:2630735-2630508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:106-335
               
               
               Cow position:chr3:23476943-23476706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:107-311
               
               
               Cow position:chr3:35283150-35283366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 204

               
               
               Conread position:107-332
               
               
               Cow position:chr3:11949416-11949643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:108-326
               
               
               Cow position:chr3:75711250-75711035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:108-333
               
               
               Cow position:chr3:31298214-31298451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:109-332
               
               
               Cow position:chr3:66978774-66978553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:110-332
               
               
               Cow position:chr3:522643-522435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:112-291
               
               
               Cow position:chr3:26894596-26894412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:114-296
               
               
               Cow position:chr3:23270031-23269848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:114-328
               
               
               Cow position:chr3:82473991-82473765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:115-264
               
               
               Cow position:chr3:61361338-61361186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 147

               
               
               Conread position:117-331
               
               
               Cow position:chr3:55117035-55117261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:117-415
               
               
               Cow position:chr3:58383896-58383597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:117-415
               
               
               Cow position:chr3:70129881-70130185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:119-331
               
               
               Cow position:chr3:51012606-51012822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:121-307
               
               
               Cow position:chr3:55971152-55970960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:121-318
               
               
               Cow position:chr3:18855021-18854817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:121-358
               
               
               Cow position:chr3:56102362-56102122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:121-410
               
               
               Cow position:chr3:53222715-53223008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:122-317
               
               
               Cow position:chr3:51609746-51609541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:124-310
               
               
               Cow position:chr3:70913154-70913347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:124-328
               
               
               Cow position:chr3:53904102-53903900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:124-346
               
               
               Cow position:chr3:55815261-55815040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:127-309
               
               
               Cow position:chr3:59701929-59701746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:131-318
               
               
               Cow position:chr3:34392181-34392372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 172

               
               
               Conread position:133-350
               
               
               Cow position:chr3:15079156-15079376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):8, 51

               
               
               Conread position:134-415
               
               
               Cow position:chr3:77276494-77276769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:137-318
               
               
               Cow position:chr3:23478146-23477959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:137-331
               
               
               Cow position:chr3:59392196-59392396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:138-342
               
               
               Cow position:chr3:66964392-66964593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:141-432
               
               
               Cow position:chr3:24639498-24639208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 164

               
               
               Conread position:142-317
               
               
               Cow position:chr3:83369221-83369047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:143-318
               
               
               Cow position:chr3:18607275-18607092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:149-324
               
               
               Cow position:chr3:36656872-36657052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:151-334
               
               
               Cow position:chr3:22716385-22716573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:152-316
               
               
               Cow position:chr3:75164016-75164184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:152-318
               
               
               Cow position:chr3:9116795-9116631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:152-332
               
               
               Cow position:chr3:12670802-12670983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):140, 27

               
               
               Conread position:155-316
               
               
               Cow position:chr3:84368481-84368643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 149

               
               
               Conread position:155-318
               
               
               Cow position:chr3:66885143-66885314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:156-318
               
               
               Cow position:chr3:61262694-61262527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:156-396
               
               
               Cow position:chr3:71104735-71104487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):75, 147

               
               
               Conread position:158-415
               
               
               Cow position:chr3:9676461-9676713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:159-332
               
               
               Cow position:chr3:68514672-68514839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:164-344
               
               
               Cow position:chr3:20993487-20993314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:167-333
               
               
               Cow position:chr3:45333719-45333891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 138

               
               
               Conread position:169-350
               
               
               Cow position:chr3:42914332-42914145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:169-357
               
               
               Cow position:chr3:37289350-37289545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:173-332
               
               
               Cow position:chr3:48530510-48530348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 153

               
               
               Conread position:175-294
               
               
               Cow position:chr3:60389506-60389384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:179-364
               
               
               Cow position:chr3:16886010-16886201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:181-352
               
               
               Cow position:chr3:19822107-19822276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:186-332
               
               
               Cow position:chr3:83988340-83988191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:198-343
               
               
               Cow position:chr3:49784159-49784010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-235
               
               
               Cow position:chr4:46393494-46393265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:1-240
               
               
               Cow position:chr4:22713437-22713669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:1-256
               
               
               Cow position:chr4:19407941-19408198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):5, 90

               
               
               Conread position:1-309
               
               
               Cow position:chr4:1495352-1495651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:1-314
               
               
               Cow position:chr4:20157360-20157669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:1-316
               
               
               Cow position:chr4:25972955-25972641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):138, 74

               
               
               Conread position:1-316
               
               
               Cow position:chr4:27665070-27664747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:1-317
               
               
               Cow position:chr4:33623770-33623459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:1-318
               
               
               Cow position:chr4:17832844-17833165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:1-318
               
               
               Cow position:chr4:19435312-19435001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:1-318
               
               
               Cow position:chr4:23646801-23647103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:1-327
               
               
               Cow position:chr4:50203811-50203478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:1-332
               
               
               Cow position:chr4:9795327-9795645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):185, 15

               
               
               Conread position:1-332
               
               
               Cow position:chr4:10703631-10703959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:1-332
               
               
               Cow position:chr4:15635391-15635717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-332
               
               
               Cow position:chr4:59785379-59785042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:1-334
               
               
               Cow position:chr4:20139460-20139795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):138, 92

               
               
               Conread position:1-335
               
               
               Cow position:chr4:18974478-18974160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:2-318
               
               
               Cow position:chr4:34641672-34641989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:2-415
               
               
               Cow position:chr4:27276490-27276892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 72

               
               
               Conread position:3-221
               
               
               Cow position:chr4:47262587-47262373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:3-301
               
               
               Cow position:chr4:27755251-27755543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 81

               
               
               Conread position:3-317
               
               
               Cow position:chr4:23846998-23847310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):136, 53

               
               
               Conread position:3-318
               
               
               Cow position:chr4:54146414-54146735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:3-318
               
               
               Cow position:chr4:60897230-60897533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-331
               
               
               Cow position:chr4:51899059-51898729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):136, 46

               
               
               Conread position:3-334
               
               
               Cow position:chr4:58858116-58858435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):225, 29

               
               
               Conread position:3-355
               
               
               Cow position:chr4:21365458-21365117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:3-358
               
               
               Cow position:chr4:36755793-36755449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 46

               
               
               Conread position:3-415
               
               
               Cow position:chr4:19307310-19306907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):136, 11

               
               
               Conread position:6-231
               
               
               Cow position:chr4:34369400-34369622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):133, 87

               
               
               Conread position:6-268
               
               
               Cow position:chr4:43740584-43740311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:6-318
               
               
               Cow position:chr4:37935235-37935541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 78

               
               
               Conread position:6-332
               
               
               Cow position:chr4:43148461-43148130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 86

               
               
               Conread position:7-153
               
               
               Cow position:chr4:19102833-19102976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 61

               
               
               Conread position:7-179
               
               
               Cow position:chr4:22546792-22546955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):132, 74

               
               
               Conread position:7-190
               
               
               Cow position:chr4:47280177-47280010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):178, 50

               
               
               Conread position:7-205
               
               
               Cow position:chr4:18756483-18756290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-227
               
               
               Cow position:chr4:41370892-41371105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-232
               
               
               Cow position:chr4:23758852-23758634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:7-235
               
               
               Cow position:chr4:16881311-16881536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:7-245
               
               
               Cow position:chr4:16594131-16593900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:7-247
               
               
               Cow position:chr4:13941505-13941274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:7-264
               
               
               Cow position:chr4:9681355-9681095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:7-268
               
               
               Cow position:chr4:29384186-29384429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:7-277
               
               
               Cow position:chr4:36945145-36945411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:7-309
               
               
               Cow position:chr4:18439520-18439824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr4:203094-203408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-318
               
               
               Cow position:chr4:961602-961923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:7-318
               
               
               Cow position:chr4:7964599-7964911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):106, 86

               
               
               Conread position:7-318
               
               
               Cow position:chr4:22344972-22345275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:7-318
               
               
               Cow position:chr4:31172722-31172406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-318
               
               
               Cow position:chr4:56570855-56570545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-324
               
               
               Cow position:chr4:37343176-37342851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 159

               
               
               Conread position:7-326
               
               
               Cow position:chr4:37704314-37703998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:7-328
               
               
               Cow position:chr4:45919083-45918761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-330
               
               
               Cow position:chr4:9845963-9845650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:7-331
               
               
               Cow position:chr4:38999472-38999154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:7-332
               
               
               Cow position:chr4:23451045-23451370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:7-332
               
               
               Cow position:chr4:37915287-37915603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:7-334
               
               
               Cow position:chr4:2121352-2121676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):206, 28

               
               
               Conread position:7-334
               
               
               Cow position:chr4:11021602-11021927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-335
               
               
               Cow position:chr4:22528338-22528664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:7-335
               
               
               Cow position:chr4:31136804-31136478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:7-344
               
               
               Cow position:chr4:27530167-27529827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:7-356
               
               
               Cow position:chr4:34337223-34337560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:7-412
               
               
               Cow position:chr4:27997736-27997337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:8-258
               
               
               Cow position:chr4:27344633-27344871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:8-288
               
               
               Cow position:chr4:41602897-41602618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 74

               
               
               Conread position:8-318
               
               
               Cow position:chr4:37827801-37828095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:8-322
               
               
               Cow position:chr4:21259262-21258956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:8-322
               
               
               Cow position:chr4:24688297-24688613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:8-368
               
               
               Cow position:chr4:59105777-59106123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:9-133
               
               
               Cow position:chr4:33181591-33181464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-174
               
               
               Cow position:chr4:19098519-19098357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:9-177
               
               
               Cow position:chr4:37675660-37675500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-184
               
               
               Cow position:chr4:19430412-19430239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-187
               
               
               Cow position:chr4:14500197-14500377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:9-188
               
               
               Cow position:chr4:13026351-13026175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-193
               
               
               Cow position:chr4:18107113-18107291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:9-198
               
               
               Cow position:chr4:52779897-52779716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-199
               
               
               Cow position:chr4:40918343-40918147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 175

               
               
               Conread position:9-200
               
               
               Cow position:chr4:44258287-44258487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:9-208
               
               
               Cow position:chr4:61313166-61313354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 79

               
               
               Conread position:9-209
               
               
               Cow position:chr4:52087974-52087788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:9-210
               
               
               Cow position:chr4:59377956-59377766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-213
               
               
               Cow position:chr4:54927393-54927591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-224
               
               
               Cow position:chr4:65950702-65950486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-227
               
               
               Cow position:chr4:19501045-19501249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:9-234
               
               
               Cow position:chr4:27632490-27632281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-235
               
               
               Cow position:chr4:29106954-29106730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 75

               
               
               Conread position:9-235
               
               
               Cow position:chr4:65175098-65175312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):178, 75

               
               
               Conread position:9-238
               
               
               Cow position:chr4:20147230-20147009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-240
               
               
               Cow position:chr4:38944211-38944439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-240
               
               
               Cow position:chr4:43515763-43515548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:9-242
               
               
               Cow position:chr4:45711410-45711189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:9-245
               
               
               Cow position:chr4:4843197-4843430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:9-245
               
               
               Cow position:chr4:48143885-48143642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-247
               
               
               Cow position:chr4:13344585-13344361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:9-248
               
               
               Cow position:chr4:2885493-2885730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-249
               
               
               Cow position:chr4:17774303-17774539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 63

               
               
               Conread position:9-252
               
               
               Cow position:chr4:52823355-52823593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:9-254
               
               
               Cow position:chr4:10379157-10378914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-256
               
               
               Cow position:chr4:22741372-22741606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:9-261
               
               
               Cow position:chr4:13973923-13974175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):62, 77

               
               
               Conread position:9-261
               
               
               Cow position:chr4:54804373-54804629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:9-263
               
               
               Cow position:chr4:30792015-30791759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:9-264
               
               
               Cow position:chr4:1354578-1354820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):173, 40

               
               
               Conread position:9-264
               
               
               Cow position:chr4:31859311-31859055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):177, 84

               
               
               Conread position:9-264
               
               
               Cow position:chr4:38935406-38935152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-282
               
               
               Cow position:chr4:34211215-34210941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-283
               
               
               Cow position:chr4:44973681-44973417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-287
               
               
               Cow position:chr4:22860664-22860935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:9-288
               
               
               Cow position:chr4:13222140-13222406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-291
               
               
               Cow position:chr4:13693625-13693911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-293
               
               
               Cow position:chr4:16799139-16799428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-296
               
               
               Cow position:chr4:12127592-12127881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):172, 79

               
               
               Conread position:9-296
               
               
               Cow position:chr4:12561087-12560798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:9-296
               
               
               Cow position:chr4:65432197-65431907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-301
               
               
               Cow position:chr4:13406756-13406463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:9-303
               
               
               Cow position:chr4:54455296-54455589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-305
               
               
               Cow position:chr4:21232827-21233118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):118, 69

               
               
               Conread position:9-305
               
               
               Cow position:chr4:29291561-29291275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-307
               
               
               Cow position:chr4:19322031-19322328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-307
               
               
               Cow position:chr4:58880914-58881215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-309
               
               
               Cow position:chr4:29805327-29805612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:9-311
               
               
               Cow position:chr4:20959-20670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-311
               
               
               Cow position:chr4:3687969-3687675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-311
               
               
               Cow position:chr4:10905418-10905712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:9-311
               
               
               Cow position:chr4:19582571-19582869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-311
               
               
               Cow position:chr4:45367786-45367483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-311
               
               
               Cow position:chr4:55395810-55395515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:9-311
               
               
               Cow position:chr4:65815660-65815945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:9-315
               
               
               Cow position:chr4:25879437-25879139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-315
               
               
               Cow position:chr4:59008308-59008626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:9-316
               
               
               Cow position:chr4:23444999-23445309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-316
               
               
               Cow position:chr4:31004362-31004662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 76

               
               
               Conread position:9-316
               
               
               Cow position:chr4:39231474-39231781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-316
               
               
               Cow position:chr4:44782421-44782116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-316
               
               
               Cow position:chr4:47730905-47730604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr4:49794706-49794421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):172, 26

               
               
               Conread position:9-317
               
               
               Cow position:chr4:5798013-5797708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):153, 69

               
               
               Conread position:9-317
               
               
               Cow position:chr4:18255899-18255605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-317
               
               
               Cow position:chr4:22236437-22236734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-317
               
               
               Cow position:chr4:38799154-38799451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:9-318
               
               
               Cow position:chr4:508862-509158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr4:570839-570540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):176, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr4:7430365-7430059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr4:7571460-7571149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):102, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr4:10968342-10968645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr4:13326908-13327218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr4:15905147-15904838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 98

               
               
               Conread position:9-318
               
               
               Cow position:chr4:19008093-19007783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr4:19142323-19142029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):157, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr4:19315961-19316257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr4:19597277-19597573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-318
               
               
               Cow position:chr4:20327662-20327975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:9-318
               
               
               Cow position:chr4:23854227-23853944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):229, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr4:25197448-25197757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr4:25806946-25806639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr4:26307442-26307760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):84, 117

               
               
               Conread position:9-318
               
               
               Cow position:chr4:28399370-28399667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr4:31348139-31348454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr4:32726271-32725964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr4:33612312-33612623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr4:36731237-36730930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr4:37691265-37691568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 88

               
               
               Conread position:9-318
               
               
               Cow position:chr4:38952600-38952299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr4:40823066-40823375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):153, 71

               
               
               Conread position:9-318
               
               
               Cow position:chr4:41300949-41301251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr4:44496420-44496124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr4:46550427-46550124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):224, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr4:53126158-53125879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr4:54191136-54190840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:9-318
               
               
               Cow position:chr4:58834356-58834666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr4:64040162-64039844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr4:66256733-66256425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-322
               
               
               Cow position:chr4:1985694-1985385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 107

               
               
               Conread position:9-322
               
               
               Cow position:chr4:21874849-21874566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:9-326
               
               
               Cow position:chr4:45738428-45738750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:9-328
               
               
               Cow position:chr4:18095627-18095946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-328
               
               
               Cow position:chr4:33433209-33433528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):94, 229

               
               
               Conread position:9-328
               
               
               Cow position:chr4:46476899-46477209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:9-330
               
               
               Cow position:chr4:3850598-3850281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-330
               
               
               Cow position:chr4:4672289-4672607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):141, 45

               
               
               Conread position:9-330
               
               
               Cow position:chr4:17052546-17052870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:9-330
               
               
               Cow position:chr4:39128584-39128257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:9-330
               
               
               Cow position:chr4:65650087-65650397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):181, 43

               
               
               Conread position:9-331
               
               
               Cow position:chr4:10037463-10037137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-331
               
               
               Cow position:chr4:14470523-14470841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:9-331
               
               
               Cow position:chr4:62472126-62471795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:9-331
               
               
               Cow position:chr4:68387839-68387519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:9-332
               
               
               Cow position:chr4:2894078-2893750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:9-332
               
               
               Cow position:chr4:8133493-8133808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-332
               
               
               Cow position:chr4:12004261-12003949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:9-332
               
               
               Cow position:chr4:13668575-13668890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr4:19265620-19265299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:9-332
               
               
               Cow position:chr4:27540666-27540347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:9-332
               
               
               Cow position:chr4:39456086-39455780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-332
               
               
               Cow position:chr4:44838845-44839159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):118, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr4:45775291-45775615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr4:51728126-51727809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr4:54937943-54937612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:9-332
               
               
               Cow position:chr4:57584195-57584502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):124, 89

               
               
               Conread position:9-332
               
               
               Cow position:chr4:64072308-64072626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:9-333
               
               
               Cow position:chr4:53208340-53208026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-333
               
               
               Cow position:chr4:62771873-62772210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:9-334
               
               
               Cow position:chr4:25888785-25889109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 55

               
               
               Conread position:9-334
               
               
               Cow position:chr4:33395651-33395964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:9-335
               
               
               Cow position:chr4:34210080-34209749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:9-336
               
               
               Cow position:chr4:13256129-13255818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-344
               
               
               Cow position:chr4:4084403-4084732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):230, 88

               
               
               Conread position:9-346
               
               
               Cow position:chr4:6208508-6208183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-352
               
               
               Cow position:chr4:3837321-3836982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 87

               
               
               Conread position:9-352
               
               
               Cow position:chr4:46456022-46456341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:9-364
               
               
               Cow position:chr4:15462204-15462579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):12, 170

               
               
               Conread position:9-364
               
               
               Cow position:chr4:51739670-51740008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-368
               
               
               Cow position:chr4:46591714-46591352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-411
               
               
               Cow position:chr4:56239813-56240191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:280
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-414
               
               
               Cow position:chr4:28836583-28836184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:9-414
               
               
               Cow position:chr4:34383295-34383698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:9-414
               
               
               Cow position:chr4:44956135-44956551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:9-415
               
               
               Cow position:chr4:7704278-7704658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-415
               
               
               Cow position:chr4:8947442-8947049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:9-415
               
               
               Cow position:chr4:15623897-15623493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 81

               
               
               Conread position:9-415
               
               
               Cow position:chr4:21065083-21064684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-415
               
               
               Cow position:chr4:23526741-23526342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr4:24744359-24744764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr4:30574515-30574107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 116

               
               
               Conread position:9-415
               
               
               Cow position:chr4:30778776-30779184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr4:45234826-45235215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):228, 81

               
               
               Conread position:9-415
               
               
               Cow position:chr4:46258543-46258132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:9-415
               
               
               Cow position:chr4:51784226-51783822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr4:51903652-51903252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-416
               
               
               Cow position:chr4:40414581-40414981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:10-264
               
               
               Cow position:chr4:31505978-31506236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):82, 99

               
               
               Conread position:10-318
               
               
               Cow position:chr4:49629527-49629237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:10-332
               
               
               Cow position:chr4:21257079-21257403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:10-336
               
               
               Cow position:chr4:66172750-66173075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:10-348
               
               
               Cow position:chr4:63349439-63349766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-368
               
               
               Cow position:chr4:34630944-34630592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:11-247
               
               
               Cow position:chr4:17186306-17186537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):128, 25

               
               
               Conread position:11-250
               
               
               Cow position:chr4:44676238-44676004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):219, 12

               
               
               Conread position:11-265
               
               
               Cow position:chr4:51769148-51768905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:11-279
               
               
               Cow position:chr4:16762681-16762953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):126, 70

               
               
               Conread position:11-291
               
               
               Cow position:chr4:8705039-8704751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:11-291
               
               
               Cow position:chr4:37344383-37344666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:11-294
               
               
               Cow position:chr4:5460816-5461096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 83

               
               
               Conread position:11-296
               
               
               Cow position:chr4:13043308-13043032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):126, 77

               
               
               Conread position:11-306
               
               
               Cow position:chr4:17474484-17474189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 61

               
               
               Conread position:11-315
               
               
               Cow position:chr4:45583078-45583385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-316
               
               
               Cow position:chr4:17378792-17379076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:11-318
               
               
               Cow position:chr4:3340997-3340691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:11-318
               
               
               Cow position:chr4:11187496-11187197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):174, 77

               
               
               Conread position:11-318
               
               
               Cow position:chr4:16339559-16339852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):128, 21

               
               
               Conread position:11-318
               
               
               Cow position:chr4:51867037-51866734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-318
               
               
               Cow position:chr4:54468258-54468556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 48

               
               
               Conread position:11-318
               
               
               Cow position:chr4:58248446-58248148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-318
               
               
               Cow position:chr4:66547723-66548013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-325
               
               
               Cow position:chr4:43894768-43895070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:11-326
               
               
               Cow position:chr4:26401000-26400689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:11-328
               
               
               Cow position:chr4:1015115-1014797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:11-330
               
               
               Cow position:chr4:68764562-68764243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:11-332
               
               
               Cow position:chr4:11194230-11193908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:11-332
               
               
               Cow position:chr4:12591169-12591485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-332
               
               
               Cow position:chr4:42673221-42672897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):128, 66

               
               
               Conread position:11-332
               
               
               Cow position:chr4:65406324-65406634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):219, 34

               
               
               Conread position:11-333
               
               
               Cow position:chr4:9137324-9137002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):125, 61

               
               
               Conread position:11-334
               
               
               Cow position:chr4:3440446-3440130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:11-350
               
               
               Cow position:chr4:22115650-22115314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:11-354
               
               
               Cow position:chr4:20279373-20279044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):221, 67

               
               
               Conread position:11-368
               
               
               Cow position:chr4:51123104-51122747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):151, 68

               
               
               Conread position:11-415
               
               
               Cow position:chr4:49001252-49001650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:12-415
               
               
               Cow position:chr4:37619843-37620236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:13-230
               
               
               Cow position:chr4:10837337-10837548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:13-318
               
               
               Cow position:chr4:46060985-46060686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:14-271
               
               
               Cow position:chr4:48322075-48321815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:14-293
               
               
               Cow position:chr4:59871517-59871258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:14-296
               
               
               Cow position:chr4:26659341-26659067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):219, 59

               
               
               Conread position:14-316
               
               
               Cow position:chr4:36893401-36893095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-318
               
               
               Cow position:chr4:656766-657079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:14-318
               
               
               Cow position:chr4:3283405-3283709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:14-318
               
               
               Cow position:chr4:22138180-22138496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:14-318
               
               
               Cow position:chr4:58261108-58261413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 85

               
               
               Conread position:14-318
               
               
               Cow position:chr4:63096032-63096335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 87

               
               
               Conread position:14-331
               
               
               Cow position:chr4:243273-242953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:14-332
               
               
               Cow position:chr4:21371433-21371126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:14-332
               
               
               Cow position:chr4:42481225-42480911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 79

               
               
               Conread position:14-333
               
               
               Cow position:chr4:21391770-21392079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:14-333
               
               
               Cow position:chr4:26323782-26323464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:14-334
               
               
               Cow position:chr4:21516961-21517273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):125, 86

               
               
               Conread position:14-335
               
               
               Cow position:chr4:43865815-43866128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:14-412
               
               
               Cow position:chr4:42423763-42424146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):218, 78

               
               
               Conread position:15-177
               
               
               Cow position:chr4:60215413-60215570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:15-201
               
               
               Cow position:chr4:52307581-52307751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:15-317
               
               
               Cow position:chr4:395972-395691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:15-322
               
               
               Cow position:chr4:35939966-35940275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:16-223
               
               
               Cow position:chr4:51605573-51605769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:16-242
               
               
               Cow position:chr4:50769727-50769948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-318
               
               
               Cow position:chr4:4737051-4736779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):165, 19

               
               
               Conread position:16-318
               
               
               Cow position:chr4:41867482-41867184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:16-415
               
               
               Cow position:chr4:17124251-17124640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:19-289
               
               
               Cow position:chr4:2602272-2601998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):120, 78

               
               
               Conread position:19-311
               
               
               Cow position:chr4:26549519-26549210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:19-318
               
               
               Cow position:chr4:35870242-35869955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):217, 56

               
               
               Conread position:19-318
               
               
               Cow position:chr4:36813415-36813112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:19-318
               
               
               Cow position:chr4:44665335-44665627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:19-318
               
               
               Cow position:chr4:68795256-68795565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 43

               
               
               Conread position:20-234
               
               
               Cow position:chr4:69543218-69543006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:20-304
               
               
               Cow position:chr4:11897259-11897545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:20-318
               
               
               Cow position:chr4:63119203-63119491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):51, 69

               
               
               Conread position:20-330
               
               
               Cow position:chr4:488387-488713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:20-330
               
               
               Cow position:chr4:12034302-12033990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):140, 68

               
               
               Conread position:20-338
               
               
               Cow position:chr4:19314048-19313726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-339
               
               
               Cow position:chr4:1405575-1405259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:20-415
               
               
               Cow position:chr4:32259809-32260196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:21-289
               
               
               Cow position:chr4:10915801-10916073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:21-293
               
               
               Cow position:chr4:65841731-65841997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):218, 21

               
               
               Conread position:21-310
               
               
               Cow position:chr4:63964953-63965243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:21-311
               
               
               Cow position:chr4:12049281-12048992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:21-330
               
               
               Cow position:chr4:285677-285383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:21-332
               
               
               Cow position:chr4:10732258-10731945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:21-340
               
               
               Cow position:chr4:28772032-28772349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 77

               
               
               Conread position:21-342
               
               
               Cow position:chr4:14964812-14964489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):210, 12

               
               
               Conread position:22-159
               
               
               Cow position:chr4:2537226-2537095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 62

               
               
               Conread position:22-246
               
               
               Cow position:chr4:45077043-45077258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:22-293
               
               
               Cow position:chr4:19463530-19463255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:22-316
               
               
               Cow position:chr4:38181715-38181423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:22-317
               
               
               Cow position:chr4:17111839-17112136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:22-318
               
               
               Cow position:chr4:66112037-66112337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 57

               
               
               Conread position:23-256
               
               
               Cow position:chr4:38705737-38705960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):116, 12

               
               
               Conread position:23-317
               
               
               Cow position:chr4:25370146-25369857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:23-318
               
               
               Cow position:chr4:20299308-20299009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:23-318
               
               
               Cow position:chr4:35982029-35981729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:23-415
               
               
               Cow position:chr4:13832575-13832969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:24-293
               
               
               Cow position:chr4:53209269-53209000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:24-318
               
               
               Cow position:chr4:52748422-52748718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 69

               
               
               Conread position:24-332
               
               
               Cow position:chr4:11201852-11201543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 68

               
               
               Conread position:24-334
               
               
               Cow position:chr4:11671484-11671176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 61

               
               
               Conread position:25-333
               
               
               Cow position:chr4:23555296-23554976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:26-195
               
               
               Cow position:chr4:5913316-5913482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:26-296
               
               
               Cow position:chr4:6653755-6653497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:26-307
               
               
               Cow position:chr4:31023482-31023192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-317
               
               
               Cow position:chr4:51630673-51630398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 63

               
               
               Conread position:26-317
               
               
               Cow position:chr4:65919641-65919359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:26-318
               
               
               Cow position:chr4:24458073-24458357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):221, 53

               
               
               Conread position:26-318
               
               
               Cow position:chr4:68362954-68362679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:26-333
               
               
               Cow position:chr4:19097320-19097017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:26-333
               
               
               Cow position:chr4:30974366-30974062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:26-337
               
               
               Cow position:chr4:23509626-23509308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:26-363
               
               
               Cow position:chr4:54930389-54930721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:27-304
               
               
               Cow position:chr4:21531614-21531887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:27-331
               
               
               Cow position:chr4:10056239-10055938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 64

               
               
               Conread position:27-333
               
               
               Cow position:chr4:48152342-48152644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):178, 52

               
               
               Conread position:27-415
               
               
               Cow position:chr4:21058347-21058739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:29-311
               
               
               Cow position:chr4:52166824-52167096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-342
               
               
               Cow position:chr4:41185883-41186186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:29-412
               
               
               Cow position:chr4:5623174-5623550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):110, 50

               
               
               Conread position:30-188
               
               
               Cow position:chr4:34700004-34700164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:30-205
               
               
               Cow position:chr4:4827151-4826982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 47

               
               
               Conread position:30-209
               
               
               Cow position:chr4:36577604-36577777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:30-235
               
               
               Cow position:chr4:36929342-36929144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:30-266
               
               
               Cow position:chr4:46720141-46720366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:30-311
               
               
               Cow position:chr4:12676829-12676560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:30-311
               
               
               Cow position:chr4:24118881-24119163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-317
               
               
               Cow position:chr4:352262-351969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:30-318
               
               
               Cow position:chr4:34310428-34310715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:30-332
               
               
               Cow position:chr4:46527027-46526725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:30-415
               
               
               Cow position:chr4:41441593-41441216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 71

               
               
               Conread position:31-318
               
               
               Cow position:chr4:17660162-17660465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 72

               
               
               Conread position:31-318
               
               
               Cow position:chr4:47290103-47289810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:31-332
               
               
               Cow position:chr4:53546056-53545755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:32-311
               
               
               Cow position:chr4:27371835-27372109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:32-318
               
               
               Cow position:chr4:2610254-2609978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:32-318
               
               
               Cow position:chr4:5999166-5999454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 60

               
               
               Conread position:32-326
               
               
               Cow position:chr4:2141772-2141478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:32-328
               
               
               Cow position:chr4:4320978-4321276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:33-416
               
               
               Cow position:chr4:61972440-61972825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 58

               
               
               Conread position:34-310
               
               
               Cow position:chr4:49424848-49424586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:34-318
               
               
               Cow position:chr4:46597402-46597123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:35-229
               
               
               Cow position:chr4:9650025-9649833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:35-291
               
               
               Cow position:chr4:43749792-43750045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:35-294
               
               
               Cow position:chr4:56591063-56590792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:35-318
               
               
               Cow position:chr4:16736529-16736243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:35-318
               
               
               Cow position:chr4:45662490-45662760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:35-340
               
               
               Cow position:chr4:24187590-24187899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):195, 105

               
               
               Conread position:38-200
               
               
               Cow position:chr4:26011868-26011714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:38-307
               
               
               Cow position:chr4:14920012-14919749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:38-318
               
               
               Cow position:chr4:26746501-26746224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-318
               
               
               Cow position:chr4:47348847-47348572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:38-318
               
               
               Cow position:chr4:47773621-47773892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:38-364
               
               
               Cow position:chr4:9912748-9912422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:38-365
               
               
               Cow position:chr4:8801526-8801197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:40-213
               
               
               Cow position:chr4:47047911-47047742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:40-289
               
               
               Cow position:chr4:46501360-46501123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:40-415
               
               
               Cow position:chr4:28613843-28613472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:41-350
               
               
               Cow position:chr4:19438480-19438166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:42-318
               
               
               Cow position:chr4:52631950-52632230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):122, 85

               
               
               Conread position:43-279
               
               
               Cow position:chr4:27687940-27687702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:43-311
               
               
               Cow position:chr4:33357949-33357678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:43-324
               
               
               Cow position:chr4:30690728-30690458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:43-331
               
               
               Cow position:chr4:11901548-11901836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:43-333
               
               
               Cow position:chr4:479995-480282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:43-415
               
               
               Cow position:chr4:22849703-22850069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:44-233
               
               
               Cow position:chr4:30929614-30929424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:44-290
               
               
               Cow position:chr4:65538405-65538640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:44-307
               
               
               Cow position:chr4:44024807-44025067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:45-342
               
               
               Cow position:chr4:19744896-19744605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:46-275
               
               
               Cow position:chr4:34924680-34924910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:46-318
               
               
               Cow position:chr4:54975306-54975048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:46-362
               
               
               Cow position:chr4:6630281-6630595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 34

               
               
               Conread position:46-368
               
               
               Cow position:chr4:19542805-19542486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:47-235
               
               
               Cow position:chr4:61148615-61148420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:47-264
               
               
               Cow position:chr4:65730911-65731126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:47-293
               
               
               Cow position:chr4:53999501-53999742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:47-318
               
               
               Cow position:chr4:23059987-23060264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:47-318
               
               
               Cow position:chr4:27511274-27511011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:47-318
               
               
               Cow position:chr4:56233691-56233431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):181, 44

               
               
               Conread position:47-332
               
               
               Cow position:chr4:61214986-61215272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-333
               
               
               Cow position:chr4:16637595-16637873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:47-413
               
               
               Cow position:chr4:48137921-48137567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:47-415
               
               
               Cow position:chr4:61190504-61190868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 55

               
               
               Conread position:49-326
               
               
               Cow position:chr4:49089798-49089528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):90, 44

               
               
               Conread position:52-210
               
               
               Cow position:chr4:69386091-69385945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:52-274
               
               
               Cow position:chr4:36725045-36724826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:52-343
               
               
               Cow position:chr4:54501430-54501733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):38, 293

               
               
               Conread position:52-415
               
               
               Cow position:chr4:43369842-43370199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:55-245
               
               
               Cow position:chr4:33869656-33869477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:55-303
               
               
               Cow position:chr4:46370826-46370565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:55-308
               
               
               Cow position:chr4:53447651-53447916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:55-318
               
               
               Cow position:chr4:10412383-10412119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 59

               
               
               Conread position:55-360
               
               
               Cow position:chr4:6792439-6792140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:55-364
               
               
               Cow position:chr4:11389532-11389844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:55-415
               
               
               Cow position:chr4:1915577-1915924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):174, 37

               
               
               Conread position:55-415
               
               
               Cow position:chr4:19584717-19584355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:56-264
               
               
               Cow position:chr4:1035051-1034851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):178, 45

               
               
               Conread position:56-300
               
               
               Cow position:chr4:51407970-51408205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:56-318
               
               
               Cow position:chr4:19700114-19699839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:57-326
               
               
               Cow position:chr4:24197801-24198063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:58-415
               
               
               Cow position:chr4:3475628-3475269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:59-322
               
               
               Cow position:chr4:18576773-18577041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:60-332
               
               
               Cow position:chr4:19558717-19558453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 6

               
               
               Conread position:61-316
               
               
               Cow position:chr4:43909740-43909494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:62-207
               
               
               Cow position:chr4:5047346-5047483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):119, 31

               
               
               Conread position:62-235
               
               
               Cow position:chr4:38887134-38887310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:62-290
               
               
               Cow position:chr4:53833040-53832813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:63-328
               
               
               Cow position:chr4:39009965-39009697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:64-318
               
               
               Cow position:chr4:1237122-1237376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:64-328
               
               
               Cow position:chr4:11099675-11099935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:65-318
               
               
               Cow position:chr4:561400-561141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:66-293
               
               
               Cow position:chr4:63813314-63813537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):142, 76

               
               
               Conread position:72-318
               
               
               Cow position:chr4:62983562-62983813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:73-318
               
               
               Cow position:chr4:53763136-53763379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):166, 32

               
               
               Conread position:74-314
               
               
               Cow position:chr4:5629761-5630009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:76-354
               
               
               Cow position:chr4:45114620-45114901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:77-311
               
               
               Cow position:chr4:40410142-40410373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:79-317
               
               
               Cow position:chr4:19238218-19237980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:83-363
               
               
               Cow position:chr4:37470530-37470247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:84-263
               
               
               Cow position:chr4:34022609-34022787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-318
               
               
               Cow position:chr4:22215677-22215915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:84-334
               
               
               Cow position:chr4:29813564-29813807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:85-318
               
               
               Cow position:chr4:16602076-16602311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:85-323
               
               
               Cow position:chr4:26541721-26541466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:87-311
               
               
               Cow position:chr4:49993046-49992833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):144, 20

               
               
               Conread position:87-415
               
               
               Cow position:chr4:15871746-15872070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:88-256
               
               
               Cow position:chr4:46552347-46552513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:88-261
               
               
               Cow position:chr4:28839601-28839422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:88-318
               
               
               Cow position:chr4:27561369-27561136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:88-318
               
               
               Cow position:chr4:62411853-62411614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:88-328
               
               
               Cow position:chr4:33421384-33421631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 57

               
               
               Conread position:88-335
               
               
               Cow position:chr4:61999475-61999730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:89-318
               
               
               Cow position:chr4:65168031-65168266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:89-329
               
               
               Cow position:chr4:23494898-23494660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:89-364
               
               
               Cow position:chr4:46082918-46083202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:89-415
               
               
               Cow position:chr4:48499810-48499483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:90-415
               
               
               Cow position:chr4:65116229-65116561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 221

               
               
               Conread position:91-318
               
               
               Cow position:chr4:22744289-22744064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):140, 12

               
               
               Conread position:91-332
               
               
               Cow position:chr4:11871939-11872186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 38

               
               
               Conread position:92-292
               
               
               Cow position:chr4:3388516-3388310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:92-311
               
               
               Cow position:chr4:42921885-42922099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:92-332
               
               
               Cow position:chr4:41097892-41097646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:92-354
               
               
               Cow position:chr4:32749174-32748899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:92-360
               
               
               Cow position:chr4:34171600-34171871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:92-385
               
               
               Cow position:chr4:23600149-23599844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:93-326
               
               
               Cow position:chr4:58512590-58512831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 176

               
               
               Conread position:93-335
               
               
               Cow position:chr4:18489416-18489667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:94-291
               
               
               Cow position:chr4:63459241-63459449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:94-415
               
               
               Cow position:chr4:57931883-57931552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 213

               
               
               Conread position:95-415
               
               
               Cow position:chr4:14159159-14159473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:96-318
               
               
               Cow position:chr4:5984072-5984305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:96-318
               
               
               Cow position:chr4:43495870-43495642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 209

               
               
               Conread position:96-331
               
               
               Cow position:chr4:45644343-45644586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:96-364
               
               
               Cow position:chr4:44072801-44073076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:97-318
               
               
               Cow position:chr4:19561649-19561435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:97-330
               
               
               Cow position:chr4:23381846-23382079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:98-296
               
               
               Cow position:chr4:16091435-16091638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:99-415
               
               
               Cow position:chr4:16239186-16239488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:100-282
               
               
               Cow position:chr4:11004758-11004943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:101-318
               
               
               Cow position:chr4:11090737-11090946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:101-318
               
               
               Cow position:chr4:46708563-46708791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:101-318
               
               
               Cow position:chr4:57555933-57555706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:102-415
               
               
               Cow position:chr4:37553078-37553393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 242

               
               
               Conread position:103-326
               
               
               Cow position:chr4:29237198-29237418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 154

               
               
               Conread position:104-279
               
               
               Cow position:chr4:10999748-10999925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:104-316
               
               
               Cow position:chr4:43763012-43762783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-318
               
               
               Cow position:chr4:54667729-54667951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-326
               
               
               Cow position:chr4:43542777-43543002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):126, 36

               
               
               Conread position:104-332
               
               
               Cow position:chr4:67392918-67392696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:106-290
               
               
               Cow position:chr4:43295737-43295924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-334
               
               
               Cow position:chr4:12903775-12903542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 165

               
               
               Conread position:106-415
               
               
               Cow position:chr4:27291999-27292308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 219

               
               
               Conread position:107-330
               
               
               Cow position:chr4:2244030-2244260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:107-345
               
               
               Cow position:chr4:62570774-62570528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:108-318
               
               
               Cow position:chr4:68944216-68944436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:109-331
               
               
               Cow position:chr4:49212760-49212994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:110-316
               
               
               Cow position:chr4:12259828-12260040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:111-311
               
               
               Cow position:chr4:41292029-41292233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:112-245
               
               
               Cow position:chr4:45574955-45574823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 28

               
               
               Conread position:113-399
               
               
               Cow position:chr4:22073365-22073644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:113-415
               
               
               Cow position:chr4:42232608-42232319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:114-415
               
               
               Cow position:chr4:65825897-65826214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 258

               
               
               Conread position:115-332
               
               
               Cow position:chr4:3990675-3990896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:115-333
               
               
               Cow position:chr4:14513288-14513516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:117-326
               
               
               Cow position:chr4:5610125-5610338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 187

               
               
               Conread position:117-333
               
               
               Cow position:chr4:42266806-42267017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:117-335
               
               
               Cow position:chr4:46668513-46668293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:118-317
               
               
               Cow position:chr4:56410135-56409924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 185

               
               
               Conread position:121-318
               
               
               Cow position:chr4:21064063-21064264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:121-415
               
               
               Cow position:chr4:26163031-26163321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:122-333
               
               
               Cow position:chr4:56852844-56852622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:127-331
               
               
               Cow position:chr4:22010129-22010331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:127-332
               
               
               Cow position:chr4:46275128-46274919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:129-367
               
               
               Cow position:chr4:55523297-55523065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:129-415
               
               
               Cow position:chr4:7249635-7249918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 218

               
               
               Conread position:130-318
               
               
               Cow position:chr4:10472153-10471963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:130-330
               
               
               Cow position:chr4:24432575-24432375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:133-318
               
               
               Cow position:chr4:56514007-56514199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:133-326
               
               
               Cow position:chr4:38309205-38309401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:133-330
               
               
               Cow position:chr4:68233903-68233707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):98, 69

               
               
               Conread position:137-317
               
               
               Cow position:chr4:19497329-19497509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:138-290
               
               
               Cow position:chr4:41907868-41908024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:138-313
               
               
               Cow position:chr4:41777463-41777642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:138-321
               
               
               Cow position:chr4:2536755-2536570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:138-330
               
               
               Cow position:chr4:620226-620426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):92, 168

               
               
               Conread position:138-353
               
               
               Cow position:chr4:67408455-67408246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:140-334
               
               
               Cow position:chr4:28789203-28789396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:141-326
               
               
               Cow position:chr4:69406292-69406100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:150-326
               
               
               Cow position:chr4:22072758-22072941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:150-363
               
               
               Cow position:chr4:3251620-3251841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-415
               
               
               Cow position:chr4:14743174-14742910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:163-332
               
               
               Cow position:chr4:40576020-40576190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:169-318
               
               
               Cow position:chr4:46385679-46385838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:174-318
               
               
               Cow position:chr4:61066537-61066392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:174-411
               
               
               Cow position:chr4:29710146-29710387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 179

               
               
               Conread position:181-352
               
               
               Cow position:chr4:5924643-5924817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:184-368
               
               
               Cow position:chr4:27287235-27287416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-318
               
               
               Cow position:chr4:38945921-38945785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:191-352
               
               
               Cow position:chr4:4300414-4300245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:197-367
               
               
               Cow position:chr4:48172974-48172802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:1-215
               
               
               Cow position:chr5:37255245-37255451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:1-229
               
               
               Cow position:chr5:18289212-18288995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:1-240
               
               
               Cow position:chr5:46512679-46512908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:1-248
               
               
               Cow position:chr5:36255167-36255417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:1-274
               
               
               Cow position:chr5:37808574-37808848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):5, 93

               
               
               Conread position:1-282
               
               
               Cow position:chr5:22643142-22643409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:1-296
               
               
               Cow position:chr5:6572834-6572546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):148, 84

               
               
               Conread position:1-315
               
               
               Cow position:chr5:37425832-37425519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 93

               
               
               Conread position:1-318
               
               
               Cow position:chr5:12149636-12149319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:1-318
               
               
               Cow position:chr5:32696733-32697040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:1-318
               
               
               Cow position:chr5:38833211-38832890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:1-318
               
               
               Cow position:chr5:40889207-40889511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:1-318
               
               
               Cow position:chr5:47870953-47871278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:1-318
               
               
               Cow position:chr5:52000307-51999992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:1-332
               
               
               Cow position:chr5:27179747-27179413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:1-332
               
               
               Cow position:chr5:55966790-55967124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-337
               
               
               Cow position:chr5:69337910-69337586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:1-348
               
               
               Cow position:chr5:458578-458215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 88

               
               
               Conread position:1-356
               
               
               Cow position:chr5:25899783-25900130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):162, 77

               
               
               Conread position:1-410
               
               
               Cow position:chr5:28224542-28224144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:1-415
               
               
               Cow position:chr5:18574262-18573854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:1-415
               
               
               Cow position:chr5:53842384-53841968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:1-415
               
               
               Cow position:chr5:65593958-65593561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:3-199
               
               
               Cow position:chr5:34192993-34192794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:3-318
               
               
               Cow position:chr5:3771932-3771619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-318
               
               
               Cow position:chr5:42064291-42063976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:3-332
               
               
               Cow position:chr5:50723132-50722809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):144, 83

               
               
               Conread position:3-340
               
               
               Cow position:chr5:1343768-1344107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:4-240
               
               
               Cow position:chr5:34168048-34167815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 85

               
               
               Conread position:4-315
               
               
               Cow position:chr5:72564849-72564538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 90

               
               
               Conread position:6-241
               
               
               Cow position:chr5:29097451-29097213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:7-179
               
               
               Cow position:chr5:28035825-28035656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:7-184
               
               
               Cow position:chr5:57526842-57527007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:7-223
               
               
               Cow position:chr5:60747198-60747404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:7-245
               
               
               Cow position:chr5:55955990-55955760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 29

               
               
               Conread position:7-255
               
               
               Cow position:chr5:11539968-11540208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 66

               
               
               Conread position:7-258
               
               
               Cow position:chr5:39181834-39182075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:7-293
               
               
               Cow position:chr5:23168744-23169021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):132, 74

               
               
               Conread position:7-296
               
               
               Cow position:chr5:51053567-51053853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:7-316
               
               
               Cow position:chr5:27306386-27306093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 54

               
               
               Conread position:7-316
               
               
               Cow position:chr5:51503086-51502787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-318
               
               
               Cow position:chr5:12709967-12709659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:7-318
               
               
               Cow position:chr5:20779316-20779607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:7-318
               
               
               Cow position:chr5:28945978-28946286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:7-318
               
               
               Cow position:chr5:31640507-31640200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 92

               
               
               Conread position:7-318
               
               
               Cow position:chr5:41636950-41636646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):156, 30

               
               
               Conread position:7-318
               
               
               Cow position:chr5:53055479-53055780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):124, 97

               
               
               Conread position:7-318
               
               
               Cow position:chr5:61840270-61839961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:7-323
               
               
               Cow position:chr5:71454530-71454828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):227, 66

               
               
               Conread position:7-332
               
               
               Cow position:chr5:53855788-53855463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:7-334
               
               
               Cow position:chr5:57626872-57626566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):218, 38

               
               
               Conread position:7-335
               
               
               Cow position:chr5:56467773-56467460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-342
               
               
               Cow position:chr5:67243999-67243673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 32

               
               
               Conread position:7-345
               
               
               Cow position:chr5:22839391-22839729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:7-405
               
               
               Cow position:chr5:23140507-23140884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):174, 43

               
               
               Conread position:7-415
               
               
               Cow position:chr5:27007979-27007580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:7-415
               
               
               Cow position:chr5:41129824-41129438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):323, 75

               
               
               Conread position:7-434
               
               
               Cow position:chr5:50821865-50821453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:8-202
               
               
               Cow position:chr5:6890939-6891125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:8-246
               
               
               Cow position:chr5:35459213-35459446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:8-293
               
               
               Cow position:chr5:58320389-58320664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:8-307
               
               
               Cow position:chr5:4617447-4617157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:8-309
               
               
               Cow position:chr5:32140627-32140925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:8-318
               
               
               Cow position:chr5:13537220-13536930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:8-318
               
               
               Cow position:chr5:41302997-41303318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:8-318
               
               
               Cow position:chr5:46798325-46798025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:8-322
               
               
               Cow position:chr5:31434368-31434035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 148

               
               
               Conread position:8-325
               
               
               Cow position:chr5:34184305-34183983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:8-332
               
               
               Cow position:chr5:16206075-16206383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):131, 45

               
               
               Conread position:8-415
               
               
               Cow position:chr5:28248254-28247860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 83

               
               
               Conread position:8-415
               
               
               Cow position:chr5:40711358-40711768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:9-96
               
               
               Cow position:chr5:33552343-33552430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-186
               
               
               Cow position:chr5:47323542-47323375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-187
               
               
               Cow position:chr5:50575864-50575693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-192
               
               
               Cow position:chr5:59873000-59873187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:9-202
               
               
               Cow position:chr5:56635975-56635793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:9-204
               
               
               Cow position:chr5:35126135-35125945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 68

               
               
               Conread position:9-205
               
               
               Cow position:chr5:19523980-19523787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):128, 71

               
               
               Conread position:9-205
               
               
               Cow position:chr5:23678622-23678814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-210
               
               
               Cow position:chr5:12901997-12901800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:9-211
               
               
               Cow position:chr5:13717489-13717687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):129, 51

               
               
               Conread position:9-227
               
               
               Cow position:chr5:54767829-54768042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):130, 57

               
               
               Conread position:9-229
               
               
               Cow position:chr5:991544-991332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-232
               
               
               Cow position:chr5:14473324-14473550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):105, 213

               
               
               Conread position:9-235
               
               
               Cow position:chr5:16214767-16214547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-235
               
               
               Cow position:chr5:67540121-67540343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-240
               
               
               Cow position:chr5:14629730-14629958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:9-241
               
               
               Cow position:chr5:35247030-35247256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:9-242
               
               
               Cow position:chr5:66582042-66581816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:9-245
               
               
               Cow position:chr5:23366684-23366915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:9-245
               
               
               Cow position:chr5:69520971-69520740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-245
               
               
               Cow position:chr5:71494901-71494667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):172, 86

               
               
               Conread position:9-246
               
               
               Cow position:chr5:32672985-32673213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):179, 29

               
               
               Conread position:9-250
               
               
               Cow position:chr5:45397650-45397419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-254
               
               
               Cow position:chr5:54060356-54060110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-258
               
               
               Cow position:chr5:30949835-30950087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-261
               
               
               Cow position:chr5:56014811-56014564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):232, 84

               
               
               Conread position:9-263
               
               
               Cow position:chr5:59115462-59115208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-264
               
               
               Cow position:chr5:41713376-41713136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:9-264
               
               
               Cow position:chr5:62638984-62638732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):114, 53

               
               
               Conread position:9-273
               
               
               Cow position:chr5:55929024-55928760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-274
               
               
               Cow position:chr5:5855938-5855696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-277
               
               
               Cow position:chr5:47547642-47547904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:9-279
               
               
               Cow position:chr5:4221058-4220792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:9-279
               
               
               Cow position:chr5:7044625-7044899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-284
               
               
               Cow position:chr5:4710072-4710336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):223, 21

               
               
               Conread position:9-293
               
               
               Cow position:chr5:11427153-11427444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-293
               
               
               Cow position:chr5:26262599-26262876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 16

               
               
               Conread position:9-296
               
               
               Cow position:chr5:18899055-18898778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:9-296
               
               
               Cow position:chr5:29213018-29212743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:9-303
               
               
               Cow position:chr5:48154385-48154685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:9-304
               
               
               Cow position:chr5:35969612-35969329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):230, 46

               
               
               Conread position:9-309
               
               
               Cow position:chr5:62142756-62142452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-312
               
               
               Cow position:chr5:4280528-4280243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:9-314
               
               
               Cow position:chr5:3204910-3204612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:9-314
               
               
               Cow position:chr5:44049778-44049482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-316
               
               
               Cow position:chr5:5257208-5257522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:9-316
               
               
               Cow position:chr5:26476938-26477218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:9-316
               
               
               Cow position:chr5:44847941-44848242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:9-316
               
               
               Cow position:chr5:54086618-54086315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-316
               
               
               Cow position:chr5:64758687-64758993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr5:72173107-72172798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:9-317
               
               
               Cow position:chr5:26094086-26094395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):165, 69

               
               
               Conread position:9-317
               
               
               Cow position:chr5:58856182-58855878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:9-318
               
               
               Cow position:chr5:5938402-5938097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr5:7193499-7193205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):233, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr5:11229594-11229901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:9-318
               
               
               Cow position:chr5:15426618-15426301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 51

               
               
               Conread position:9-318
               
               
               Cow position:chr5:15598155-15598461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-318
               
               
               Cow position:chr5:16509186-16508869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:9-318
               
               
               Cow position:chr5:16937942-16938235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):115, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr5:20128132-20127827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr5:21617538-21617228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr5:24349187-24348884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr5:26595023-26595330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-318
               
               
               Cow position:chr5:28302663-28302967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 106

               
               
               Conread position:9-318
               
               
               Cow position:chr5:28926100-28926412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr5:30302971-30302671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr5:30845190-30844885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):223, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr5:31481228-31480926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:9-318
               
               
               Cow position:chr5:34638964-34638658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr5:35208341-35208034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-318
               
               
               Cow position:chr5:36868817-36868518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):172, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr5:43929656-43929961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr5:46122273-46122576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr5:46509785-46510095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr5:56070939-56070626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr5:61576625-61576312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr5:63987366-63987674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-318
               
               
               Cow position:chr5:64137336-64137024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:9-324
               
               
               Cow position:chr5:41951016-41951317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):132, 64

               
               
               Conread position:9-325
               
               
               Cow position:chr5:20783698-20783394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):231, 29

               
               
               Conread position:9-325
               
               
               Cow position:chr5:37757758-37758038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:9-325
               
               
               Cow position:chr5:46322723-46323046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:9-326
               
               
               Cow position:chr5:65588779-65588477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:9-327
               
               
               Cow position:chr5:17063001-17063330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:9-327
               
               
               Cow position:chr5:29353045-29353365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 149

               
               
               Conread position:9-328
               
               
               Cow position:chr5:55068786-55068480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:9-329
               
               
               Cow position:chr5:30253821-30253507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-329
               
               
               Cow position:chr5:41165168-41164850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:9-330
               
               
               Cow position:chr5:32394679-32394357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-330
               
               
               Cow position:chr5:50637901-50637590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-331
               
               
               Cow position:chr5:62107406-62107735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr5:3281915-3281590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-332
               
               
               Cow position:chr5:29771608-29771277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr5:29828127-29827812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:9-332
               
               
               Cow position:chr5:34528627-34528320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr5:42845513-42845841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr5:55756338-55756683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:9-332
               
               
               Cow position:chr5:57935028-57935355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-332
               
               
               Cow position:chr5:59082114-59082433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-332
               
               
               Cow position:chr5:64321834-64321507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-333
               
               
               Cow position:chr5:44752227-44752552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:9-334
               
               
               Cow position:chr5:37646463-37646795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-334
               
               
               Cow position:chr5:64523783-64524123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:9-335
               
               
               Cow position:chr5:34050198-34049865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-335
               
               
               Cow position:chr5:43858340-43858672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:9-335
               
               
               Cow position:chr5:44796653-44796962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-340
               
               
               Cow position:chr5:31918722-31918404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):179, 17

               
               
               Conread position:9-342
               
               
               Cow position:chr5:53835797-53835464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-349
               
               
               Cow position:chr5:43992404-43992067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-398
               
               
               Cow position:chr5:63964089-63964480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:9-411
               
               
               Cow position:chr5:67932392-67932776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):208, 28

               
               
               Conread position:9-412
               
               
               Cow position:chr5:54311416-54311010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-415
               
               
               Cow position:chr5:6528763-6528364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:9-415
               
               
               Cow position:chr5:19813140-19813536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr5:27102714-27103107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr5:31144707-31145098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-415
               
               
               Cow position:chr5:37646154-37645749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-415
               
               
               Cow position:chr5:39447455-39447851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr5:40356766-40357203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 270

               
               
               Conread position:9-415
               
               
               Cow position:chr5:45845611-45846009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):224, 82

               
               
               Conread position:9-415
               
               
               Cow position:chr5:47313553-47313157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:9-415
               
               
               Cow position:chr5:47316894-47317284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr5:47601892-47601495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:9-415
               
               
               Cow position:chr5:51151274-51151679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-415
               
               
               Cow position:chr5:52645000-52645396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-415
               
               
               Cow position:chr5:60715288-60715671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):183, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr5:65776305-65776708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-432
               
               
               Cow position:chr5:32378922-32378539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:10-209
               
               
               Cow position:chr5:49474466-49474659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:10-231
               
               
               Cow position:chr5:62985603-62985384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):129, 48

               
               
               Conread position:10-237
               
               
               Cow position:chr5:39875203-39874979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:10-246
               
               
               Cow position:chr5:72951923-72951688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:10-257
               
               
               Cow position:chr5:30629080-30629324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-288
               
               
               Cow position:chr5:69731579-69731320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:10-290
               
               
               Cow position:chr5:56518143-56518409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 64

               
               
               Conread position:10-318
               
               
               Cow position:chr5:39094629-39094326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):129, 66

               
               
               Conread position:10-325
               
               
               Cow position:chr5:26990469-26990159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:10-331
               
               
               Cow position:chr5:61726044-61725730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:10-332
               
               
               Cow position:chr5:50482781-50483103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:10-364
               
               
               Cow position:chr5:58144525-58144880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:10-413
               
               
               Cow position:chr5:34463499-34463903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):86, 102

               
               
               Conread position:11-194
               
               
               Cow position:chr5:55019370-55019194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):170, 61

               
               
               Conread position:11-202
               
               
               Cow position:chr5:18553975-18553793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-205
               
               
               Cow position:chr5:58446885-58446693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 80

               
               
               Conread position:11-236
               
               
               Cow position:chr5:29844358-29844138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):129, 86

               
               
               Conread position:11-236
               
               
               Cow position:chr5:44446787-44447008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 69

               
               
               Conread position:11-243
               
               
               Cow position:chr5:65883694-65883924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 67

               
               
               Conread position:11-245
               
               
               Cow position:chr5:54090114-54089893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-247
               
               
               Cow position:chr5:44673780-44673531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:11-267
               
               
               Cow position:chr5:50600125-50599877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):221, 69

               
               
               Conread position:11-270
               
               
               Cow position:chr5:7552338-7552598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-289
               
               
               Cow position:chr5:50943079-50943352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):219, 62

               
               
               Conread position:11-290
               
               
               Cow position:chr5:9390631-9390336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 94

               
               
               Conread position:11-293
               
               
               Cow position:chr5:57737177-57736912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-304
               
               
               Cow position:chr5:6503803-6504093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:11-311
               
               
               Cow position:chr5:7723743-7723452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):170, 73

               
               
               Conread position:11-311
               
               
               Cow position:chr5:22242689-22243005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:11-316
               
               
               Cow position:chr5:740862-741174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):128, 12

               
               
               Conread position:11-317
               
               
               Cow position:chr5:32153241-32153542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:11-318
               
               
               Cow position:chr5:14903990-14904294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:11-318
               
               
               Cow position:chr5:27419651-27419948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:11-318
               
               
               Cow position:chr5:43737885-43738175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):129, 62

               
               
               Conread position:11-318
               
               
               Cow position:chr5:61488033-61488338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 60

               
               
               Conread position:11-318
               
               
               Cow position:chr5:65765051-65765339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:11-318
               
               
               Cow position:chr5:75436808-75437124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-325
               
               
               Cow position:chr5:9089945-9090257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-326
               
               
               Cow position:chr5:16893693-16894011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-328
               
               
               Cow position:chr5:48573693-48573998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):126, 63

               
               
               Conread position:11-328
               
               
               Cow position:chr5:65752938-65752618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):128, 90

               
               
               Conread position:11-331
               
               
               Cow position:chr5:65601535-65601220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):175, 95

               
               
               Conread position:11-332
               
               
               Cow position:chr5:14550506-14550827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-332
               
               
               Cow position:chr5:31469515-31469824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):128, 48

               
               
               Conread position:11-338
               
               
               Cow position:chr5:54350283-54350608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-340
               
               
               Cow position:chr5:39695730-39695408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-348
               
               
               Cow position:chr5:73080283-73079955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:11-350
               
               
               Cow position:chr5:31660579-31660897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):170, 68

               
               
               Conread position:11-412
               
               
               Cow position:chr5:15479204-15478795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-415
               
               
               Cow position:chr5:34441702-34442109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:11-415
               
               
               Cow position:chr5:39937193-39936787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:11-416
               
               
               Cow position:chr5:62172490-62172089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:12-275
               
               
               Cow position:chr5:6670116-6670382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:12-328
               
               
               Cow position:chr5:41604701-41604372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:12-339
               
               
               Cow position:chr5:40927909-40928221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 37

               
               
               Conread position:13-334
               
               
               Cow position:chr5:41334680-41334358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:14-240
               
               
               Cow position:chr5:21920455-21920226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:14-240
               
               
               Cow position:chr5:66972504-66972282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):125, 71

               
               
               Conread position:14-264
               
               
               Cow position:chr5:51935265-51935009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):125, 67

               
               
               Conread position:14-291
               
               
               Cow position:chr5:40039695-40039971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:14-318
               
               
               Cow position:chr5:52165102-52165409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-318
               
               
               Cow position:chr5:55942304-55942625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 127

               
               
               Conread position:14-328
               
               
               Cow position:chr5:14154223-14153905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:14-331
               
               
               Cow position:chr5:58793532-58793855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):125, 76

               
               
               Conread position:14-332
               
               
               Cow position:chr5:35826677-35826349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:14-342
               
               
               Cow position:chr5:58229771-58229452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-415
               
               
               Cow position:chr5:2309481-2309896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:14-415
               
               
               Cow position:chr5:56524249-56523858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):216, 99

               
               
               Conread position:16-202
               
               
               Cow position:chr5:21535038-21535221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:16-240
               
               
               Cow position:chr5:50972599-50972385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):165, 18

               
               
               Conread position:16-277
               
               
               Cow position:chr5:68329915-68330169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):223, 63

               
               
               Conread position:16-285
               
               
               Cow position:chr5:50215488-50215753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-314
               
               
               Cow position:chr5:48758012-48757721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):217, 13

               
               
               Conread position:16-317
               
               
               Cow position:chr5:40387800-40388092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:16-318
               
               
               Cow position:chr5:10261161-10261464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):172, 19

               
               
               Conread position:16-340
               
               
               Cow position:chr5:41598638-41598945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):214, 63

               
               
               Conread position:16-352
               
               
               Cow position:chr5:55089214-55088885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:16-415
               
               
               Cow position:chr5:45940536-45940929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:17-318
               
               
               Cow position:chr5:32956023-32956317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:17-318
               
               
               Cow position:chr5:45225741-45226051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 254

               
               
               Conread position:18-240
               
               
               Cow position:chr5:54154320-54154533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):101, 71

               
               
               Conread position:18-324
               
               
               Cow position:chr5:48143713-48144024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):121, 41

               
               
               Conread position:19-318
               
               
               Cow position:chr5:32975483-32975778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 79

               
               
               Conread position:19-318
               
               
               Cow position:chr5:34885093-34885383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 64

               
               
               Conread position:19-318
               
               
               Cow position:chr5:41609354-41609078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):223, 18

               
               
               Conread position:20-221
               
               
               Cow position:chr5:56680320-56680121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 58

               
               
               Conread position:20-245
               
               
               Cow position:chr5:71723144-71722915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:20-264
               
               
               Cow position:chr5:28957545-28957790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:20-311
               
               
               Cow position:chr5:72286846-72287131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:20-318
               
               
               Cow position:chr5:20554685-20554976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 57

               
               
               Conread position:20-318
               
               
               Cow position:chr5:33414339-33414632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:20-318
               
               
               Cow position:chr5:56820192-56820487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:20-318
               
               
               Cow position:chr5:74858644-74858346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:20-333
               
               
               Cow position:chr5:30487311-30487006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:20-338
               
               
               Cow position:chr5:49685202-49685528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:20-344
               
               
               Cow position:chr5:21964358-21964038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 64

               
               
               Conread position:20-415
               
               
               Cow position:chr5:66815502-66815897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:21-210
               
               
               Cow position:chr5:49440803-49440987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:21-277
               
               
               Cow position:chr5:34562085-34561822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:21-304
               
               
               Cow position:chr5:45804128-45803847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:21-305
               
               
               Cow position:chr5:57575841-57575552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:21-316
               
               
               Cow position:chr5:5111006-5111302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr5:14314596-14314295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:21-331
               
               
               Cow position:chr5:13691499-13691816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 86

               
               
               Conread position:21-332
               
               
               Cow position:chr5:6045364-6045045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:21-332
               
               
               Cow position:chr5:66366578-66366290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:21-339
               
               
               Cow position:chr5:40109561-40109253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:21-352
               
               
               Cow position:chr5:42744854-42744536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:21-354
               
               
               Cow position:chr5:37814694-37814360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:21-414
               
               
               Cow position:chr5:21828936-21828541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:22-289
               
               
               Cow position:chr5:75230734-75230485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:22-291
               
               
               Cow position:chr5:28456338-28456612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:22-319
               
               
               Cow position:chr5:64823244-64823541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:22-415
               
               
               Cow position:chr5:2500112-2500509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:23-240
               
               
               Cow position:chr5:29979916-29980127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:23-279
               
               
               Cow position:chr5:69461399-69461146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):207, 59

               
               
               Conread position:23-309
               
               
               Cow position:chr5:65941184-65941472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:23-318
               
               
               Cow position:chr5:48829220-48828920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):158, 64

               
               
               Conread position:23-318
               
               
               Cow position:chr5:57074265-57074562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):147, 56

               
               
               Conread position:23-325
               
               
               Cow position:chr5:24996156-24996458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:23-346
               
               
               Cow position:chr5:4031923-4032244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 69

               
               
               Conread position:23-414
               
               
               Cow position:chr5:359873-360259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):115, 50

               
               
               Conread position:24-318
               
               
               Cow position:chr5:66339144-66338857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:24-332
               
               
               Cow position:chr5:9894058-9894368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:24-332
               
               
               Cow position:chr5:34505861-34506167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):220, 90

               
               
               Conread position:26-311
               
               
               Cow position:chr5:16025402-16025681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):208, 12

               
               
               Conread position:26-316
               
               
               Cow position:chr5:68081910-68082192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:26-317
               
               
               Cow position:chr5:3280809-3281094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:27-279
               
               
               Cow position:chr5:1678454-1678211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 59

               
               
               Conread position:27-318
               
               
               Cow position:chr5:28927523-28927820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:29-318
               
               
               Cow position:chr5:48224522-48224803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:30-210
               
               
               Cow position:chr5:59057680-59057866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:30-258
               
               
               Cow position:chr5:44028244-44028469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 49

               
               
               Conread position:30-268
               
               
               Cow position:chr5:41452606-41452844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-274
               
               
               Cow position:chr5:3639428-3639666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 51

               
               
               Conread position:30-293
               
               
               Cow position:chr5:3242418-3242676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-317
               
               
               Cow position:chr5:1247325-1247050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 57

               
               
               Conread position:30-318
               
               
               Cow position:chr5:1766290-1766572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:30-318
               
               
               Cow position:chr5:36855265-36854985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr5:54404831-54405122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:30-318
               
               
               Cow position:chr5:65886951-65887241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:30-329
               
               
               Cow position:chr5:21039919-21040212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-332
               
               
               Cow position:chr5:63840084-63840387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 73

               
               
               Conread position:30-367
               
               
               Cow position:chr5:34300978-34300649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-415
               
               
               Cow position:chr5:43923093-43923465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:31-331
               
               
               Cow position:chr5:26377612-26377907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-415
               
               
               Cow position:chr5:41531027-41531406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:31-415
               
               
               Cow position:chr5:54713673-54714058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:32-305
               
               
               Cow position:chr5:35235652-35235923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:33-318
               
               
               Cow position:chr5:27403173-27403471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:33-342
               
               
               Cow position:chr5:72903176-72903475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:34-237
               
               
               Cow position:chr5:51800917-51801112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:34-263
               
               
               Cow position:chr5:24485378-24485598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:35-307
               
               
               Cow position:chr5:49361938-49362207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:35-326
               
               
               Cow position:chr5:22934395-22934691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:37-415
               
               
               Cow position:chr5:37941737-37942109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:37-415
               
               
               Cow position:chr5:62826700-62827071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:38-230
               
               
               Cow position:chr5:47696390-47696574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-291
               
               
               Cow position:chr5:1027643-1027892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:38-317
               
               
               Cow position:chr5:18090789-18090501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:38-318
               
               
               Cow position:chr5:27015731-27015464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):199, 40

               
               
               Conread position:38-318
               
               
               Cow position:chr5:38683410-38683129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:38-415
               
               
               Cow position:chr5:44993989-44994361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 55

               
               
               Conread position:39-282
               
               
               Cow position:chr5:7140056-7140296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:39-318
               
               
               Cow position:chr5:4218918-4218650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:40-219
               
               
               Cow position:chr5:60448265-60448090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:40-306
               
               
               Cow position:chr5:8024144-8024407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:40-308
               
               
               Cow position:chr5:60126422-60126156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:40-318
               
               
               Cow position:chr5:34115702-34115435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:40-318
               
               
               Cow position:chr5:66831661-66831941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:40-332
               
               
               Cow position:chr5:41522753-41523034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:43-291
               
               
               Cow position:chr5:26790409-26790652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:43-360
               
               
               Cow position:chr5:37713848-37714174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:46-318
               
               
               Cow position:chr5:16185131-16184862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:46-335
               
               
               Cow position:chr5:61030179-61030473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:46-341
               
               
               Cow position:chr5:71505171-71504878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):193, 47

               
               
               Conread position:47-230
               
               
               Cow position:chr5:56334729-56334543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:47-240
               
               
               Cow position:chr5:19079171-19078969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:47-241
               
               
               Cow position:chr5:71579218-71579028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:47-296
               
               
               Cow position:chr5:43395107-43395343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr5:62678715-62678431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 262

               
               
               Conread position:47-326
               
               
               Cow position:chr5:49821182-49820907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:48-296
               
               
               Cow position:chr5:8994524-8994771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:49-318
               
               
               Cow position:chr5:54064816-54064552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:49-416
               
               
               Cow position:chr5:694615-694264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 43

               
               
               Conread position:50-328
               
               
               Cow position:chr5:55176934-55176651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:52-200
               
               
               Cow position:chr5:56469785-56469931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:52-240
               
               
               Cow position:chr5:43816568-43816753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:52-277
               
               
               Cow position:chr5:17644617-17644842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:52-318
               
               
               Cow position:chr5:47888674-47888942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:55-192
               
               
               Cow position:chr5:29860385-29860250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:55-236
               
               
               Cow position:chr5:47721578-47721396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:55-318
               
               
               Cow position:chr5:23856124-23856389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:55-332
               
               
               Cow position:chr5:43474879-43474606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-415
               
               
               Cow position:chr5:64844085-64844433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:56-318
               
               
               Cow position:chr5:28324389-28324118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:56-318
               
               
               Cow position:chr5:50975935-50975660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:56-334
               
               
               Cow position:chr5:65924656-65924942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:56-415
               
               
               Cow position:chr5:6130387-6130040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:56-415
               
               
               Cow position:chr5:37377897-37377552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:57-318
               
               
               Cow position:chr5:50533352-50533611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:58-318
               
               
               Cow position:chr5:49559212-49558932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:62-318
               
               
               Cow position:chr5:56134937-56135196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:64-318
               
               
               Cow position:chr5:72150275-72150023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:64-333
               
               
               Cow position:chr5:59443223-59443493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:64-356
               
               
               Cow position:chr5:10789643-10789944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:65-240
               
               
               Cow position:chr5:53145859-53146028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:65-318
               
               
               Cow position:chr5:56433833-56433574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:69-318
               
               
               Cow position:chr5:14420320-14420572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:73-331
               
               
               Cow position:chr5:42677249-42676994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:73-352
               
               
               Cow position:chr5:9234051-9234342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 237

               
               
               Conread position:74-282
               
               
               Cow position:chr5:74019752-74019962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:74-289
               
               
               Cow position:chr5:33080769-33080987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:74-318
               
               
               Cow position:chr5:30638840-30639077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:74-332
               
               
               Cow position:chr5:51357478-51357745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:74-332
               
               
               Cow position:chr5:59297939-59298200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:79-296
               
               
               Cow position:chr5:57271247-57271470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:79-316
               
               
               Cow position:chr5:25495336-25495563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:79-415
               
               
               Cow position:chr5:39299548-39299212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:80-364
               
               
               Cow position:chr5:52438164-52437876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:81-307
               
               
               Cow position:chr5:5848170-5848403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 165

               
               
               Conread position:81-318
               
               
               Cow position:chr5:33661870-33661627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:81-415
               
               
               Cow position:chr5:35145365-35145034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:81-415
               
               
               Cow position:chr5:68481253-68480894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:83-250
               
               
               Cow position:chr5:41486726-41486896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 32

               
               
               Conread position:84-318
               
               
               Cow position:chr5:9859702-9859945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:84-318
               
               
               Cow position:chr5:17087011-17087257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:84-326
               
               
               Cow position:chr5:35763286-35763055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-327
               
               
               Cow position:chr5:64393170-64392918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:84-331
               
               
               Cow position:chr5:4506938-4507201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:84-333
               
               
               Cow position:chr5:28330317-28330574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:84-339
               
               
               Cow position:chr5:35684947-35684686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:85-254
               
               
               Cow position:chr5:64060282-64060457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:85-318
               
               
               Cow position:chr5:63992164-63992391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):149, 12

               
               
               Conread position:85-415
               
               
               Cow position:chr5:7921391-7921698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:86-318
               
               
               Cow position:chr5:72006845-72007080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:86-332
               
               
               Cow position:chr5:14538650-14538890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:87-279
               
               
               Cow position:chr5:48009840-48010035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:87-356
               
               
               Cow position:chr5:50900909-50900643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:87-415
               
               
               Cow position:chr5:23640987-23641302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:89-311
               
               
               Cow position:chr5:14415782-14415553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:89-318
               
               
               Cow position:chr5:4631126-4630901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:89-318
               
               
               Cow position:chr5:51490752-51490981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:89-318
               
               
               Cow position:chr5:73253097-73252869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:89-326
               
               
               Cow position:chr5:74643663-74643896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:89-415
               
               
               Cow position:chr5:3442471-3442129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:91-318
               
               
               Cow position:chr5:26133081-26133301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:91-332
               
               
               Cow position:chr5:21525176-21524923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:92-318
               
               
               Cow position:chr5:6683348-6683575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:92-318
               
               
               Cow position:chr5:27690055-27690286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:92-328
               
               
               Cow position:chr5:20974442-20974681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:92-332
               
               
               Cow position:chr5:4797314-4797552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:93-318
               
               
               Cow position:chr5:6086556-6086789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:93-332
               
               
               Cow position:chr5:12351785-12352023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:93-332
               
               
               Cow position:chr5:50950559-50950312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:93-344
               
               
               Cow position:chr5:55989749-55989488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:94-342
               
               
               Cow position:chr5:34232744-34232492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:95-228
               
               
               Cow position:chr5:31020138-31020268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:95-318
               
               
               Cow position:chr5:57327797-57327561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:95-328
               
               
               Cow position:chr5:66257639-66257405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:96-318
               
               
               Cow position:chr5:27155025-27154795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:96-412
               
               
               Cow position:chr5:29505109-29504792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:98-311
               
               
               Cow position:chr5:41229704-41229492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:98-332
               
               
               Cow position:chr5:65932930-65933169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:98-335
               
               
               Cow position:chr5:44583130-44583362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:99-333
               
               
               Cow position:chr5:72035089-72035327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:100-256
               
               
               Cow position:chr5:39242202-39242355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:100-332
               
               
               Cow position:chr5:34916136-34915901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 202

               
               
               Conread position:100-346
               
               
               Cow position:chr5:26046331-26046079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 205

               
               
               Conread position:100-416
               
               
               Cow position:chr5:2332513-2332843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:101-293
               
               
               Cow position:chr5:45037016-45036819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:101-356
               
               
               Cow position:chr5:3825084-3824834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:101-468
               
               
               Cow position:chr5:66281401-66281034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:103-415
               
               
               Cow position:chr5:58519412-58519715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:104-318
               
               
               Cow position:chr5:42748149-42747931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:104-346
               
               
               Cow position:chr5:32963639-32963884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:105-332
               
               
               Cow position:chr5:45706036-45705806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-348
               
               
               Cow position:chr5:33467051-33467299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:106-237
               
               
               Cow position:chr5:19294499-19294628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:106-306
               
               
               Cow position:chr5:62026957-62027161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:106-318
               
               
               Cow position:chr5:6987153-6986931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:106-325
               
               
               Cow position:chr5:34288481-34288704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:106-332
               
               
               Cow position:chr5:3492185-3491960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:106-395
               
               
               Cow position:chr5:68604849-68604557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 198

               
               
               Conread position:106-415
               
               
               Cow position:chr5:26562146-26561828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:107-318
               
               
               Cow position:chr5:51076659-51076872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:107-318
               
               
               Cow position:chr5:60520151-60519939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:107-342
               
               
               Cow position:chr5:70581907-70582149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:107-414
               
               
               Cow position:chr5:30816708-30816400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:108-318
               
               
               Cow position:chr5:72310693-72310487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:108-332
               
               
               Cow position:chr5:61600407-61600171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:108-356
               
               
               Cow position:chr5:56385218-56384962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:108-415
               
               
               Cow position:chr5:3058664-3058354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:115-317
               
               
               Cow position:chr5:63388775-63388568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:115-334
               
               
               Cow position:chr5:40759957-40759736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:118-318
               
               
               Cow position:chr5:19278722-19278919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:120-318
               
               
               Cow position:chr5:46103964-46104163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:121-335
               
               
               Cow position:chr5:61656580-61656362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:124-318
               
               
               Cow position:chr5:48178705-48178903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):104, 154

               
               
               Conread position:125-415
               
               
               Cow position:chr5:39675481-39675759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:127-309
               
               
               Cow position:chr5:37366870-37366679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-330
               
               
               Cow position:chr5:19905298-19905517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:127-331
               
               
               Cow position:chr5:63917441-63917650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 175

               
               
               Conread position:128-264
               
               
               Cow position:chr5:45025950-45026091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:128-316
               
               
               Cow position:chr5:64176149-64176346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 179

               
               
               Conread position:129-326
               
               
               Cow position:chr5:44054068-44054273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:129-352
               
               
               Cow position:chr5:2851281-2851053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:131-293
               
               
               Cow position:chr5:35449217-35449051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:131-333
               
               
               Cow position:chr5:50729464-50729253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:131-334
               
               
               Cow position:chr5:26099406-26099613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:132-405
               
               
               Cow position:chr5:25225689-25225966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:133-327
               
               
               Cow position:chr5:12672069-12672262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:135-354
               
               
               Cow position:chr5:54530943-54530719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:136-307
               
               
               Cow position:chr5:15462674-15462498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 145

               
               
               Conread position:137-415
               
               
               Cow position:chr5:38853324-38853043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 208

               
               
               Conread position:138-291
               
               
               Cow position:chr5:20407710-20407867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:139-352
               
               
               Cow position:chr5:24642770-24642983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:146-356
               
               
               Cow position:chr5:24836997-24837205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):89, 149

               
               
               Conread position:149-350
               
               
               Cow position:chr5:62261812-62261612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:150-336
               
               
               Cow position:chr5:14703021-14703213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:150-352
               
               
               Cow position:chr5:33537833-33537629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:150-354
               
               
               Cow position:chr5:66297183-66296975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:151-364
               
               
               Cow position:chr5:6033184-6032965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:155-318
               
               
               Cow position:chr5:1104924-1105098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:156-332
               
               
               Cow position:chr5:41981336-41981160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:156-346
               
               
               Cow position:chr5:57156714-57156531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:156-358
               
               
               Cow position:chr5:34921892-34922102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:157-343
               
               
               Cow position:chr5:20691532-20691711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:161-340
               
               
               Cow position:chr5:28035644-28035461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:164-330
               
               
               Cow position:chr5:40595072-40595241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:165-332
               
               
               Cow position:chr5:39418855-39419024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:173-338
               
               
               Cow position:chr5:65325962-65325793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:176-365
               
               
               Cow position:chr5:4509417-4509218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:177-359
               
               
               Cow position:chr5:51360868-51360677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:181-331
               
               
               Cow position:chr5:19751758-19751612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:182-350
               
               
               Cow position:chr5:26541205-26541037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:182-356
               
               
               Cow position:chr5:9499176-9499358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:184-344
               
               
               Cow position:chr5:34923202-34923360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:185-364
               
               
               Cow position:chr5:31784795-31784614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:198-368
               
               
               Cow position:chr5:44735028-44735205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:224-360
               
               
               Cow position:chr5:57890366-57890230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:241-368
               
               
               Cow position:chr5:52162449-52162322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-232
               
               
               Cow position:chr6:50467239-50467012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-311
               
               
               Cow position:chr6:31261098-31260781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-316
               
               
               Cow position:chr6:57164533-57164219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-317
               
               
               Cow position:chr6:13592811-13592498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 92

               
               
               Conread position:1-317
               
               
               Cow position:chr6:60859197-60859518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:1-318
               
               
               Cow position:chr6:47339253-47339562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 103

               
               
               Conread position:1-319
               
               
               Cow position:chr6:21111055-21110755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:1-328
               
               
               Cow position:chr6:42565791-42565463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:1-332
               
               
               Cow position:chr6:1770094-1770422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:1-332
               
               
               Cow position:chr6:35471406-35471753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-332
               
               
               Cow position:chr6:53178733-53178413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:1-334
               
               
               Cow position:chr6:6596675-6596353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:1-338
               
               
               Cow position:chr6:59508460-59508119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:1-359
               
               
               Cow position:chr6:31564235-31564587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:1-415
               
               
               Cow position:chr6:10105875-10106302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):9, 351

               
               
               Conread position:1-415
               
               
               Cow position:chr6:12338097-12337683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:1-415
               
               
               Cow position:chr6:42519092-42518668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 103

               
               
               Conread position:2-240
               
               
               Cow position:chr6:36194699-36194460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:2-278
               
               
               Cow position:chr6:65264445-65264708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:2-294
               
               
               Cow position:chr6:1499744-1499451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 77

               
               
               Conread position:2-296
               
               
               Cow position:chr6:42566957-42566677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):164, 77

               
               
               Conread position:3-137
               
               
               Cow position:chr6:41655942-41656071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:3-240
               
               
               Cow position:chr6:54036043-54036266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):136, 63

               
               
               Conread position:3-264
               
               
               Cow position:chr6:12542830-12543092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 85

               
               
               Conread position:3-279
               
               
               Cow position:chr6:8125426-8125158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):178, 90

               
               
               Conread position:3-326
               
               
               Cow position:chr6:35103228-35103548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-358
               
               
               Cow position:chr6:20172326-20171968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:3-396
               
               
               Cow position:chr6:38218766-38218381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 34

               
               
               Conread position:3-415
               
               
               Cow position:chr6:18048924-18049327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 85

               
               
               Conread position:4-290
               
               
               Cow position:chr6:53519525-53519808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:4-331
               
               
               Cow position:chr6:62924897-62925221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:5-269
               
               
               Cow position:chr6:3595889-3595629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 81

               
               
               Conread position:6-201
               
               
               Cow position:chr6:143278-143460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:6-318
               
               
               Cow position:chr6:47026574-47026269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):133, 97

               
               
               Conread position:7-137
               
               
               Cow position:chr6:46331017-46330892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:7-180
               
               
               Cow position:chr6:36284339-36284171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-193
               
               
               Cow position:chr6:13565182-13565000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-218
               
               
               Cow position:chr6:51969172-51968954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:7-225
               
               
               Cow position:chr6:21514512-21514735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:7-232
               
               
               Cow position:chr6:36189793-36189574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:7-266
               
               
               Cow position:chr6:47204572-47204312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:7-269
               
               
               Cow position:chr6:26450408-26450153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:7-293
               
               
               Cow position:chr6:8787941-8788225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-293
               
               
               Cow position:chr6:63298935-63299214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-296
               
               
               Cow position:chr6:54144399-54144110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:7-296
               
               
               Cow position:chr6:63720296-63720008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:7-306
               
               
               Cow position:chr6:21231620-21231335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-307
               
               
               Cow position:chr6:10399814-10400097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:7-311
               
               
               Cow position:chr6:19695902-19695601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:7-311
               
               
               Cow position:chr6:54864565-54864872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:7-316
               
               
               Cow position:chr6:50271015-50271305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr6:827611-827919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:7-318
               
               
               Cow position:chr6:30314953-30315270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-318
               
               
               Cow position:chr6:46860071-46860380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):136, 81

               
               
               Conread position:7-324
               
               
               Cow position:chr6:65871133-65870805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:7-325
               
               
               Cow position:chr6:63272515-63272833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-326
               
               
               Cow position:chr6:19427547-19427228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:7-330
               
               
               Cow position:chr6:16746439-16746115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):132, 98

               
               
               Conread position:7-332
               
               
               Cow position:chr6:35181161-35181480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 64

               
               
               Conread position:7-333
               
               
               Cow position:chr6:21542417-21542092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:7-342
               
               
               Cow position:chr6:38441268-38440945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:7-346
               
               
               Cow position:chr6:4383575-4383251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:7-348
               
               
               Cow position:chr6:24622877-24623200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):133, 89

               
               
               Conread position:7-352
               
               
               Cow position:chr6:37149285-37148952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-360
               
               
               Cow position:chr6:66874447-66874107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 53

               
               
               Conread position:7-412
               
               
               Cow position:chr6:60057559-60057964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:7-415
               
               
               Cow position:chr6:14696269-14696676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:7-415
               
               
               Cow position:chr6:24004632-24004245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:7-415
               
               
               Cow position:chr6:28976944-28977349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):288, 78

               
               
               Conread position:7-415
               
               
               Cow position:chr6:36470466-36470867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-415
               
               
               Cow position:chr6:40774236-40774672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-302
               
               
               Cow position:chr6:37467446-37467736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:8-307
               
               
               Cow position:chr6:28148930-28148643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:9-136
               
               
               Cow position:chr6:51086162-51086044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:9-156
               
               
               Cow position:chr6:2585036-2584894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:9-185
               
               
               Cow position:chr6:33929453-33929626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-185
               
               
               Cow position:chr6:37395307-37395483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 170

               
               
               Conread position:9-191
               
               
               Cow position:chr6:54364898-54365085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:9-191
               
               
               Cow position:chr6:67281988-67281812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-195
               
               
               Cow position:chr6:37463116-37462936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-207
               
               
               Cow position:chr6:19292895-19292700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):180, 70

               
               
               Conread position:9-210
               
               
               Cow position:chr6:1429734-1429538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:9-210
               
               
               Cow position:chr6:7119525-7119711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:9-210
               
               
               Cow position:chr6:20196209-20196394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-213
               
               
               Cow position:chr6:17548880-17549085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:9-215
               
               
               Cow position:chr6:36645479-36645282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:9-219
               
               
               Cow position:chr6:35774889-35775096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):154, 66

               
               
               Conread position:9-221
               
               
               Cow position:chr6:10039817-10039609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-225
               
               
               Cow position:chr6:58597412-58597620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:9-227
               
               
               Cow position:chr6:21590801-21590575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 208

               
               
               Conread position:9-235
               
               
               Cow position:chr6:23401899-23402115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:9-235
               
               
               Cow position:chr6:35726188-35725969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-240
               
               
               Cow position:chr6:15243349-15243125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-242
               
               
               Cow position:chr6:4559211-4559436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-244
               
               
               Cow position:chr6:38610062-38609833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-245
               
               
               Cow position:chr6:377219-376997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:9-245
               
               
               Cow position:chr6:17313829-17313599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:9-246
               
               
               Cow position:chr6:60118244-60118009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:9-251
               
               
               Cow position:chr6:582179-582413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:9-252
               
               
               Cow position:chr6:32287733-32287496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:9-260
               
               
               Cow position:chr6:67323403-67323161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):180, 77

               
               
               Conread position:9-261
               
               
               Cow position:chr6:60740108-60739859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-263
               
               
               Cow position:chr6:19264405-19264658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-264
               
               
               Cow position:chr6:120339-120080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-264
               
               
               Cow position:chr6:16764552-16764801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:9-264
               
               
               Cow position:chr6:55763947-55763695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-264
               
               
               Cow position:chr6:60850286-60850549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:9-265
               
               
               Cow position:chr6:48112290-48112044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:9-267
               
               
               Cow position:chr6:639908-639657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-268
               
               
               Cow position:chr6:14914142-14914402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:9-276
               
               
               Cow position:chr6:39093845-39093573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 212

               
               
               Conread position:9-276
               
               
               Cow position:chr6:52901332-52901070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:9-277
               
               
               Cow position:chr6:47355917-47355652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):232, 84

               
               
               Conread position:9-279
               
               
               Cow position:chr6:30974136-30973867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-287
               
               
               Cow position:chr6:26909779-26910051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:9-289
               
               
               Cow position:chr6:55475349-55475062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 66

               
               
               Conread position:9-291
               
               
               Cow position:chr6:53932753-53933035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:9-293
               
               
               Cow position:chr6:16423796-16423511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):198, 88

               
               
               Conread position:9-293
               
               
               Cow position:chr6:36652516-36652231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-293
               
               
               Cow position:chr6:46292254-46292526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-293
               
               
               Cow position:chr6:51893406-51893693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:9-293
               
               
               Cow position:chr6:52412953-52412666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-294
               
               
               Cow position:chr6:47575000-47574716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-296
               
               
               Cow position:chr6:4864453-4864731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-296
               
               
               Cow position:chr6:9750963-9751231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):225, 20

               
               
               Conread position:9-296
               
               
               Cow position:chr6:22502817-22503114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-296
               
               
               Cow position:chr6:32268794-32269061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-296
               
               
               Cow position:chr6:33917745-33918042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:9-296
               
               
               Cow position:chr6:47305435-47305148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 85

               
               
               Conread position:9-303
               
               
               Cow position:chr6:46865498-46865791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-306
               
               
               Cow position:chr6:59069530-59069829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 85

               
               
               Conread position:9-307
               
               
               Cow position:chr6:19681431-19681726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-307
               
               
               Cow position:chr6:35842752-35842455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-308
               
               
               Cow position:chr6:6401045-6400745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:9-308
               
               
               Cow position:chr6:66131400-66131105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:9-309
               
               
               Cow position:chr6:457269-456983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:9-309
               
               
               Cow position:chr6:63251829-63252126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-311
               
               
               Cow position:chr6:6098172-6098488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:9-311
               
               
               Cow position:chr6:7989321-7989619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:9-311
               
               
               Cow position:chr6:16103103-16103408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):172, 26

               
               
               Conread position:9-316
               
               
               Cow position:chr6:7539667-7539362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):129, 34

               
               
               Conread position:9-316
               
               
               Cow position:chr6:21456589-21456900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:9-316
               
               
               Cow position:chr6:34196056-34196359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:9-317
               
               
               Cow position:chr6:611643-611349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):234, 21

               
               
               Conread position:9-317
               
               
               Cow position:chr6:7190025-7190331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-317
               
               
               Cow position:chr6:10176208-10176513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr6:899199-899497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr6:3952612-3952312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr6:5609353-5609653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-318
               
               
               Cow position:chr6:8966191-8965877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:9-318
               
               
               Cow position:chr6:16626043-16625735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:9-318
               
               
               Cow position:chr6:20606054-20605721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 190

               
               
               Conread position:9-318
               
               
               Cow position:chr6:28483110-28482802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:9-318
               
               
               Cow position:chr6:31535475-31535783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr6:38207396-38207708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-318
               
               
               Cow position:chr6:48282086-48281782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr6:53401451-53401156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr6:54430924-54430606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-318
               
               
               Cow position:chr6:61515094-61515410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:9-318
               
               
               Cow position:chr6:64432032-64431726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr6:67214843-67214529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-326
               
               
               Cow position:chr6:5302326-5302625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:9-326
               
               
               Cow position:chr6:9008518-9008832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-328
               
               
               Cow position:chr6:23247872-23248186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-328
               
               
               Cow position:chr6:54600442-54600146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 97

               
               
               Conread position:9-329
               
               
               Cow position:chr6:56376254-56376571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-330
               
               
               Cow position:chr6:3929412-3929096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 7

               
               
               Conread position:9-331
               
               
               Cow position:chr6:8562814-8562490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:9-331
               
               
               Cow position:chr6:12551363-12551042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:9-331
               
               
               Cow position:chr6:16700355-16700033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:9-331
               
               
               Cow position:chr6:46465915-46465602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr6:15242930-15242609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr6:16707106-16706780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:9-332
               
               
               Cow position:chr6:32122001-32121684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):223, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr6:40032284-40031967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 35

               
               
               Conread position:9-332
               
               
               Cow position:chr6:51835493-51835173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-332
               
               
               Cow position:chr6:54365234-54365550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-332
               
               
               Cow position:chr6:61113861-61113523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:9-332
               
               
               Cow position:chr6:61269406-61269103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr6:61631515-61631846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-333
               
               
               Cow position:chr6:18988302-18987989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):117, 26

               
               
               Conread position:9-333
               
               
               Cow position:chr6:26728438-26728754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:9-333
               
               
               Cow position:chr6:49398526-49398844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:9-333
               
               
               Cow position:chr6:54867611-54867283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-334
               
               
               Cow position:chr6:17090693-17090370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-335
               
               
               Cow position:chr6:20097865-20098194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-338
               
               
               Cow position:chr6:50090736-50090407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):179, 95

               
               
               Conread position:9-343
               
               
               Cow position:chr6:130069-130401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:9-344
               
               
               Cow position:chr6:53460473-53460810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:9-352
               
               
               Cow position:chr6:44194455-44194792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:9-358
               
               
               Cow position:chr6:21869555-21869898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):223, 70

               
               
               Conread position:9-364
               
               
               Cow position:chr6:60350198-60350558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:9-367
               
               
               Cow position:chr6:9452676-9453031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:9-368
               
               
               Cow position:chr6:47640338-47640706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-414
               
               
               Cow position:chr6:10695955-10695558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-415
               
               
               Cow position:chr6:5095448-5095856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:9-415
               
               
               Cow position:chr6:6067608-6067990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):181, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr6:8637375-8636973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:9-415
               
               
               Cow position:chr6:32867124-32867508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:9-415
               
               
               Cow position:chr6:35990140-35990530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:9-415
               
               
               Cow position:chr6:44078608-44078214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr6:46558151-46557756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-415
               
               
               Cow position:chr6:48567258-48567644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:9-415
               
               
               Cow position:chr6:52430928-52431335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:9-415
               
               
               Cow position:chr6:52478317-52478744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:9-415
               
               
               Cow position:chr6:59597742-59597355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:9-415
               
               
               Cow position:chr6:66531728-66532104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-416
               
               
               Cow position:chr6:31635594-31635990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:9-422
               
               
               Cow position:chr6:25407297-25407715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:9-428
               
               
               Cow position:chr6:28477262-28476865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:10-235
               
               
               Cow position:chr6:15447105-15447330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:10-289
               
               
               Cow position:chr6:25008812-25008530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:10-293
               
               
               Cow position:chr6:47799386-47799110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:10-311
               
               
               Cow position:chr6:24545707-24545411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:10-316
               
               
               Cow position:chr6:23532748-23532452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):227, 15

               
               
               Conread position:10-317
               
               
               Cow position:chr6:57405032-57405336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:10-318
               
               
               Cow position:chr6:24962238-24961932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:10-318
               
               
               Cow position:chr6:54368811-54369112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:10-332
               
               
               Cow position:chr6:34235322-34235660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:10-415
               
               
               Cow position:chr6:24781466-24781866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):129, 25

               
               
               Conread position:10-415
               
               
               Cow position:chr6:58074141-58073741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:10-415
               
               
               Cow position:chr6:63047685-63047275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):82, 341

               
               
               Conread position:11-221
               
               
               Cow position:chr6:55209649-55209444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-248
               
               
               Cow position:chr6:62669957-62669735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 82

               
               
               Conread position:11-264
               
               
               Cow position:chr6:53673956-53673706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-275
               
               
               Cow position:chr6:5113961-5114217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):217, 24

               
               
               Conread position:11-287
               
               
               Cow position:chr6:35993676-35993394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):170, 74

               
               
               Conread position:11-294
               
               
               Cow position:chr6:32676990-32677269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:11-296
               
               
               Cow position:chr6:12652300-12652015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-296
               
               
               Cow position:chr6:21061794-21062074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:11-303
               
               
               Cow position:chr6:12091901-12092182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 81

               
               
               Conread position:11-303
               
               
               Cow position:chr6:45596440-45596732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 75

               
               
               Conread position:11-307
               
               
               Cow position:chr6:528192-528478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-316
               
               
               Cow position:chr6:11192372-11192663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-316
               
               
               Cow position:chr6:21736798-21737093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 24

               
               
               Conread position:11-317
               
               
               Cow position:chr6:9469734-9469441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:11-317
               
               
               Cow position:chr6:17997228-17997527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:11-317
               
               
               Cow position:chr6:31526138-31525837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:11-318
               
               
               Cow position:chr6:6060480-6060770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-318
               
               
               Cow position:chr6:8804439-8804740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:11-318
               
               
               Cow position:chr6:13367377-13367082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 81

               
               
               Conread position:11-319
               
               
               Cow position:chr6:14958248-14958562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:11-325
               
               
               Cow position:chr6:35436086-35435783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-328
               
               
               Cow position:chr6:6063202-6063502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-332
               
               
               Cow position:chr6:6943588-6943907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):144, 9

               
               
               Conread position:11-332
               
               
               Cow position:chr6:29077827-29077502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 69

               
               
               Conread position:11-332
               
               
               Cow position:chr6:54132907-54132591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):231, 61

               
               
               Conread position:11-333
               
               
               Cow position:chr6:60474222-60473906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:11-334
               
               
               Cow position:chr6:15937763-15938077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-334
               
               
               Cow position:chr6:16765304-16765619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):177, 66

               
               
               Conread position:11-413
               
               
               Cow position:chr6:67968518-67968931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:11-415
               
               
               Cow position:chr6:21004768-21004354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:11-415
               
               
               Cow position:chr6:25784404-25784011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:11-415
               
               
               Cow position:chr6:48170030-48169643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:11-415
               
               
               Cow position:chr6:54140889-54140516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:12-235
               
               
               Cow position:chr6:48803545-48803763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:13-332
               
               
               Cow position:chr6:11169788-11169481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:14-203
               
               
               Cow position:chr6:62929584-62929402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:14-232
               
               
               Cow position:chr6:21235132-21234921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:14-236
               
               
               Cow position:chr6:25615006-25615227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:14-240
               
               
               Cow position:chr6:57571568-57571346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-279
               
               
               Cow position:chr6:60819602-60819341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:14-310
               
               
               Cow position:chr6:445412-445106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:14-315
               
               
               Cow position:chr6:58732222-58732524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:14-318
               
               
               Cow position:chr6:6343515-6343213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:14-329
               
               
               Cow position:chr6:53652129-53651815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 58

               
               
               Conread position:15-318
               
               
               Cow position:chr6:51674997-51674705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:15-358
               
               
               Cow position:chr6:45064930-45065259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:16-303
               
               
               Cow position:chr6:48187496-48187779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:16-328
               
               
               Cow position:chr6:63197076-63197394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:17-261
               
               
               Cow position:chr6:50984308-50984068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:18-337
               
               
               Cow position:chr6:54490648-54490972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 69

               
               
               Conread position:19-240
               
               
               Cow position:chr6:67456802-67456582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:19-333
               
               
               Cow position:chr6:9375297-9375602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):215, 36

               
               
               Conread position:19-348
               
               
               Cow position:chr6:24583137-24583457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 60

               
               
               Conread position:19-415
               
               
               Cow position:chr6:34549486-34549107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:20-213
               
               
               Cow position:chr6:58370841-58370649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:20-240
               
               
               Cow position:chr6:16316396-16316179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:20-240
               
               
               Cow position:chr6:53841423-53841630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 65

               
               
               Conread position:20-264
               
               
               Cow position:chr6:44984416-44984167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:20-307
               
               
               Cow position:chr6:40713420-40713705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:20-318
               
               
               Cow position:chr6:44099169-44098872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:20-332
               
               
               Cow position:chr6:607346-607035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:20-332
               
               
               Cow position:chr6:50747081-50746754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):70, 261

               
               
               Conread position:20-335
               
               
               Cow position:chr6:28148339-28148021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:20-348
               
               
               Cow position:chr6:35613335-35613652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:20-364
               
               
               Cow position:chr6:3118110-3118456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-394
               
               
               Cow position:chr6:14850631-14851000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:21-159
               
               
               Cow position:chr6:68652269-68652403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-200
               
               
               Cow position:chr6:10487670-10487496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:21-240
               
               
               Cow position:chr6:61608594-61608380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-270
               
               
               Cow position:chr6:59109027-59108777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-274
               
               
               Cow position:chr6:11246846-11246595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:21-318
               
               
               Cow position:chr6:52248050-52248346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):117, 58

               
               
               Conread position:21-415
               
               
               Cow position:chr6:23696082-23695696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:22-332
               
               
               Cow position:chr6:11637675-11637972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):168, 63

               
               
               Conread position:22-335
               
               
               Cow position:chr6:2547336-2547013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:23-264
               
               
               Cow position:chr6:19013151-19012910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 64

               
               
               Conread position:24-245
               
               
               Cow position:chr6:4691896-4692115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):111, 64

               
               
               Conread position:26-296
               
               
               Cow position:chr6:34076107-34075828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:26-318
               
               
               Cow position:chr6:5673327-5673016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:26-332
               
               
               Cow position:chr6:11830273-11829939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:26-332
               
               
               Cow position:chr6:24031456-24031148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:26-334
               
               
               Cow position:chr6:51581175-51581488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):204, 59

               
               
               Conread position:26-374
               
               
               Cow position:chr6:36202898-36202557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 65

               
               
               Conread position:26-415
               
               
               Cow position:chr6:56843234-56842858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:27-326
               
               
               Cow position:chr6:26915407-26915109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:27-332
               
               
               Cow position:chr6:68049507-68049209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):154, 71

               
               
               Conread position:29-197
               
               
               Cow position:chr6:6673176-6673014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:29-317
               
               
               Cow position:chr6:28083941-28084228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):110, 50

               
               
               Conread position:29-326
               
               
               Cow position:chr6:38614893-38614603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:30-259
               
               
               Cow position:chr6:19446326-19446106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-283
               
               
               Cow position:chr6:12669172-12668929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:30-292
               
               
               Cow position:chr6:1703877-1703627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-296
               
               
               Cow position:chr6:28318473-28318218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:30-317
               
               
               Cow position:chr6:37199454-37199761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr6:29240014-29239730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:30-318
               
               
               Cow position:chr6:38771357-38771083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:30-328
               
               
               Cow position:chr6:67951028-67950736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:30-334
               
               
               Cow position:chr6:14949408-14949710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 62

               
               
               Conread position:30-360
               
               
               Cow position:chr6:15300756-15301072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 58

               
               
               Conread position:31-236
               
               
               Cow position:chr6:5413894-5413692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:31-317
               
               
               Cow position:chr6:7824838-7824551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:32-278
               
               
               Cow position:chr6:65259417-65259640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:33-240
               
               
               Cow position:chr6:9219342-9219142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:34-276
               
               
               Cow position:chr6:54288143-54287909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:34-415
               
               
               Cow position:chr6:24652125-24652482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:35-277
               
               
               Cow position:chr6:9839240-9838990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):104, 59

               
               
               Conread position:35-296
               
               
               Cow position:chr6:3545763-3545513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:35-313
               
               
               Cow position:chr6:38641565-38641290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:35-318
               
               
               Cow position:chr6:16675872-16675609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:35-336
               
               
               Cow position:chr6:9026592-9026286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:35-415
               
               
               Cow position:chr6:22969151-22968756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:35-415
               
               
               Cow position:chr6:58316117-58315745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:38-235
               
               
               Cow position:chr6:38234024-38233834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-259
               
               
               Cow position:chr6:57299080-57298866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:38-289
               
               
               Cow position:chr6:47989237-47989002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):192, 46

               
               
               Conread position:38-296
               
               
               Cow position:chr6:60239330-60239583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):153, 55

               
               
               Conread position:38-318
               
               
               Cow position:chr6:3374500-3374782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:38-332
               
               
               Cow position:chr6:8318095-8318393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 37

               
               
               Conread position:38-332
               
               
               Cow position:chr6:36928726-36928425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:38-356
               
               
               Cow position:chr6:49685647-49685334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:40-318
               
               
               Cow position:chr6:62325054-62324777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:42-325
               
               
               Cow position:chr6:34031722-34031448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:43-211
               
               
               Cow position:chr6:3592463-3592299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:43-240
               
               
               Cow position:chr6:40834408-40834600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:43-335
               
               
               Cow position:chr6:16411251-16410966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:44-232
               
               
               Cow position:chr6:19351099-19351277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:44-321
               
               
               Cow position:chr6:61137434-61137150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:45-296
               
               
               Cow position:chr6:53731582-53731330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:45-311
               
               
               Cow position:chr6:12630079-12629819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:46-318
               
               
               Cow position:chr6:25773328-25773594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:46-335
               
               
               Cow position:chr6:66303783-66304071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:47-232
               
               
               Cow position:chr6:33150352-33150529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 57

               
               
               Conread position:47-318
               
               
               Cow position:chr6:5957972-5958229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):183, 36

               
               
               Conread position:47-326
               
               
               Cow position:chr6:13741757-13741475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:47-332
               
               
               Cow position:chr6:58076286-58075998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):142, 46

               
               
               Conread position:47-359
               
               
               Cow position:chr6:67304861-67304548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:48-326
               
               
               Cow position:chr6:47624906-47625180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:49-315
               
               
               Cow position:chr6:17248797-17248526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:49-412
               
               
               Cow position:chr6:44511300-44510936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:52-240
               
               
               Cow position:chr6:29266255-29266074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:52-273
               
               
               Cow position:chr6:58363956-58364180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:52-291
               
               
               Cow position:chr6:416157-415908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:52-326
               
               
               Cow position:chr6:20230775-20231046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:53-328
               
               
               Cow position:chr6:5462008-5462271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:55-262
               
               
               Cow position:chr6:32335849-32335649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:55-318
               
               
               Cow position:chr6:60456877-60456617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):112, 47

               
               
               Conread position:55-332
               
               
               Cow position:chr6:37634837-37634563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):84, 51

               
               
               Conread position:55-360
               
               
               Cow position:chr6:56041575-56041877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:55-361
               
               
               Cow position:chr6:51191878-51191559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:55-368
               
               
               Cow position:chr6:48344381-48344063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:56-325
               
               
               Cow position:chr6:1907591-1907319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:57-279
               
               
               Cow position:chr6:49604722-49604509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:57-282
               
               
               Cow position:chr6:18968734-18968950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:57-296
               
               
               Cow position:chr6:21812783-21812539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:58-318
               
               
               Cow position:chr6:56850062-56849805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):81, 42

               
               
               Conread position:58-337
               
               
               Cow position:chr6:52401917-52401629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:61-353
               
               
               Cow position:chr6:30825989-30826282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:62-227
               
               
               Cow position:chr6:1510632-1510470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:62-317
               
               
               Cow position:chr6:24515157-24515405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):187, 26

               
               
               Conread position:63-245
               
               
               Cow position:chr6:603136-602957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:65-318
               
               
               Cow position:chr6:54884865-54885126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:67-294
               
               
               Cow position:chr6:50577568-50577331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:71-331
               
               
               Cow position:chr6:29210537-29210276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:71-332
               
               
               Cow position:chr6:24468356-24468619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:74-332
               
               
               Cow position:chr6:46206050-46205791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:79-316
               
               
               Cow position:chr6:53138892-53139140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:83-318
               
               
               Cow position:chr6:47540556-47540313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:84-308
               
               
               Cow position:chr6:48425295-48425524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:87-224
               
               
               Cow position:chr6:56848893-56849032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr6:26172887-26173042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:87-318
               
               
               Cow position:chr6:54647497-54647735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 220

               
               
               Conread position:87-415
               
               
               Cow position:chr6:67544272-67544594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:88-311
               
               
               Cow position:chr6:6460565-6460336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:88-315
               
               
               Cow position:chr6:44377292-44377056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):13, 219

               
               
               Conread position:89-318
               
               
               Cow position:chr6:24649875-24649635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:89-318
               
               
               Cow position:chr6:28810972-28811207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:89-340
               
               
               Cow position:chr6:56902883-56902629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:90-342
               
               
               Cow position:chr6:28079880-28080133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:91-304
               
               
               Cow position:chr6:33277060-33276840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:91-307
               
               
               Cow position:chr6:1886644-1886865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:91-333
               
               
               Cow position:chr6:16738039-16737793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:92-296
               
               
               Cow position:chr6:8187501-8187710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:92-318
               
               
               Cow position:chr6:38853636-38853871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:92-318
               
               
               Cow position:chr6:53711134-53710905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:92-330
               
               
               Cow position:chr6:12387308-12387547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:92-331
               
               
               Cow position:chr6:64449409-64449166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:93-406
               
               
               Cow position:chr6:60930880-60931196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):5, 64

               
               
               Conread position:94-318
               
               
               Cow position:chr6:69500341-69500117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:94-333
               
               
               Cow position:chr6:642549-642805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:94-415
               
               
               Cow position:chr6:54807244-54806921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:95-230
               
               
               Cow position:chr6:61572042-61571906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:95-317
               
               
               Cow position:chr6:52556461-52556686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:96-317
               
               
               Cow position:chr6:61130463-61130694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 211

               
               
               Conread position:96-318
               
               
               Cow position:chr6:48806981-48807212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:96-318
               
               
               Cow position:chr6:60442433-60442206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:96-327
               
               
               Cow position:chr6:54294121-54293889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:96-332
               
               
               Cow position:chr6:42961345-42961594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:96-418
               
               
               Cow position:chr6:50445748-50446064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:97-240
               
               
               Cow position:chr6:50509687-50509547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:97-318
               
               
               Cow position:chr6:65702391-65702614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:98-246
               
               
               Cow position:chr6:45388343-45388194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:98-318
               
               
               Cow position:chr6:60153049-60152823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:98-326
               
               
               Cow position:chr6:57686164-57685938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:100-332
               
               
               Cow position:chr6:33302422-33302183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:101-316
               
               
               Cow position:chr6:242819-242603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:101-318
               
               
               Cow position:chr6:30786147-30786361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:102-318
               
               
               Cow position:chr6:389182-388958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 172

               
               
               Conread position:102-326
               
               
               Cow position:chr6:45617428-45617661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 90

               
               
               Conread position:104-219
               
               
               Cow position:chr6:61644826-61644945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:104-318
               
               
               Cow position:chr6:2013025-2012806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-326
               
               
               Cow position:chr6:45160288-45160512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 194

               
               
               Conread position:104-346
               
               
               Cow position:chr6:14201706-14201457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:104-350
               
               
               Cow position:chr6:52025646-52025898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 213

               
               
               Conread position:104-416
               
               
               Cow position:chr6:22877152-22877457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:105-318
               
               
               Cow position:chr6:2607619-2607400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-318
               
               
               Cow position:chr6:15922994-15923210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 198

               
               
               Conread position:105-330
               
               
               Cow position:chr6:12500863-12500635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:105-331
               
               
               Cow position:chr6:7103226-7103463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:105-332
               
               
               Cow position:chr6:32915918-32916147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:105-415
               
               
               Cow position:chr6:10332086-10332408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-415
               
               
               Cow position:chr6:24327136-24327437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:106-245
               
               
               Cow position:chr6:28156145-28156282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:106-318
               
               
               Cow position:chr6:2582875-2582662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:106-332
               
               
               Cow position:chr6:4079383-4079610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):141, 31

               
               
               Conread position:106-332
               
               
               Cow position:chr6:46571121-46570893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:107-318
               
               
               Cow position:chr6:32210625-32210839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 195

               
               
               Conread position:107-335
               
               
               Cow position:chr6:61575612-61575374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:107-337
               
               
               Cow position:chr6:10636177-10635945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:108-348
               
               
               Cow position:chr6:19401858-19401619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:109-316
               
               
               Cow position:chr6:40264199-40264408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:110-218
               
               
               Cow position:chr6:26043750-26043643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:110-332
               
               
               Cow position:chr6:41823821-41824055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:111-318
               
               
               Cow position:chr6:66453798-66453588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:112-330
               
               
               Cow position:chr6:39994463-39994686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:114-325
               
               
               Cow position:chr6:10605684-10605465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:115-332
               
               
               Cow position:chr6:21587422-21587648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:117-318
               
               
               Cow position:chr6:40138723-40138918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:117-318
               
               
               Cow position:chr6:59620662-59620456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:117-415
               
               
               Cow position:chr6:35703195-35703501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):22, 263

               
               
               Conread position:121-330
               
               
               Cow position:chr6:1475178-1474971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:122-332
               
               
               Cow position:chr6:53345785-53345569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:126-318
               
               
               Cow position:chr6:7694364-7694566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:127-318
               
               
               Cow position:chr6:3719019-3719221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:127-335
               
               
               Cow position:chr6:21311765-21311988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:128-318
               
               
               Cow position:chr6:1783795-1783985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:128-326
               
               
               Cow position:chr6:36196194-36195993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:128-414
               
               
               Cow position:chr6:57384504-57384203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:129-318
               
               
               Cow position:chr6:55366335-55366536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:129-415
               
               
               Cow position:chr6:65862671-65862384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:131-360
               
               
               Cow position:chr6:12519491-12519265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:133-290
               
               
               Cow position:chr6:36011667-36011509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:134-373
               
               
               Cow position:chr6:13717820-13717586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:137-330
               
               
               Cow position:chr6:55607840-55608031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:138-256
               
               
               Cow position:chr6:57088728-57088846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:138-318
               
               
               Cow position:chr6:21535027-21534846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:138-318
               
               
               Cow position:chr6:59015587-59015775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:141-343
               
               
               Cow position:chr6:10705800-10706010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 195

               
               
               Conread position:141-364
               
               
               Cow position:chr6:65846478-65846706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:146-316
               
               
               Cow position:chr6:51398764-51398590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:146-318
               
               
               Cow position:chr6:45690626-45690806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 161

               
               
               Conread position:148-309
               
               
               Cow position:chr6:51463652-51463820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:148-415
               
               
               Cow position:chr6:12845273-12845008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:151-345
               
               
               Cow position:chr6:59301861-59302066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:152-264
               
               
               Cow position:chr6:52705759-52705876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:152-332
               
               
               Cow position:chr6:20329982-20329794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:152-415
               
               
               Cow position:chr6:9323119-9322838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:155-296
               
               
               Cow position:chr6:37603477-37603332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:155-332
               
               
               Cow position:chr6:8209637-8209816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:155-335
               
               
               Cow position:chr6:17067864-17068049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:156-334
               
               
               Cow position:chr6:7130926-7131100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:169-325
               
               
               Cow position:chr6:21184898-21184736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:169-332
               
               
               Cow position:chr6:60018006-60017841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:169-356
               
               
               Cow position:chr6:14289398-14289585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):125, 131

               
               
               Conread position:169-415
               
               
               Cow position:chr6:14063721-14063960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:172-325
               
               
               Cow position:chr6:10225748-10225896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:178-331
               
               
               Cow position:chr6:62966962-62967113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:179-358
               
               
               Cow position:chr6:16298621-16298438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:186-356
               
               
               Cow position:chr6:31048587-31048757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:188-415
               
               
               Cow position:chr6:6117629-6117858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:235-363
               
               
               Cow position:chr6:17736498-17736369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1-188
               
               
               Cow position:chr7:36774474-36774290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:1-221
               
               
               Cow position:chr7:32910644-32910435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:1-247
               
               
               Cow position:chr7:21166136-21166382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-252
               
               
               Cow position:chr7:48638681-48638428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 101

               
               
               Conread position:1-268
               
               
               Cow position:chr7:43894935-43894663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:1-307
               
               
               Cow position:chr7:6042078-6041786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):5, 58

               
               
               Conread position:1-308
               
               
               Cow position:chr7:43882187-43881877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-311
               
               
               Cow position:chr7:10254-9941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 55

               
               
               Conread position:1-317
               
               
               Cow position:chr7:39103332-39103636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:1-318
               
               
               Cow position:chr7:6706406-6706086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:1-318
               
               
               Cow position:chr7:7106678-7106993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:1-318
               
               
               Cow position:chr7:14076176-14076481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-318
               
               
               Cow position:chr7:20537471-20537152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 90

               
               
               Conread position:1-318
               
               
               Cow position:chr7:37569155-37568819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-324
               
               
               Cow position:chr7:58170844-58170524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 78

               
               
               Conread position:1-332
               
               
               Cow position:chr7:53551834-53552170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:1-334
               
               
               Cow position:chr7:68956782-68956460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:1-415
               
               
               Cow position:chr7:39147909-39147497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:1-415
               
               
               Cow position:chr7:53989156-53988761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:1-418
               
               
               Cow position:chr7:67839448-67839032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:2-318
               
               
               Cow position:chr7:11714323-11714638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):137, 53

               
               
               Conread position:2-318
               
               
               Cow position:chr7:49106098-49106413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):45, 50

               
               
               Conread position:2-332
               
               
               Cow position:chr7:48443660-48443981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:2-358
               
               
               Cow position:chr7:40622046-40621685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:3-241
               
               
               Cow position:chr7:46818392-46818624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):205, 97

               
               
               Conread position:3-289
               
               
               Cow position:chr7:52784703-52784985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):136, 26

               
               
               Conread position:3-311
               
               
               Cow position:chr7:37361979-37361680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:3-317
               
               
               Cow position:chr7:2884440-2884134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):5, 33

               
               
               Conread position:3-317
               
               
               Cow position:chr7:17406246-17406561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):157, 32

               
               
               Conread position:3-318
               
               
               Cow position:chr7:55076597-55076908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:3-331
               
               
               Cow position:chr7:64364426-64364752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):136, 83

               
               
               Conread position:3-332
               
               
               Cow position:chr7:39170012-39169677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:3-332
               
               
               Cow position:chr7:45927063-45927379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):227, 62

               
               
               Conread position:3-346
               
               
               Cow position:chr7:21197278-21197618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):134, 56

               
               
               Conread position:4-338
               
               
               Cow position:chr7:53743799-53744133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):159, 41

               
               
               Conread position:4-345
               
               
               Cow position:chr7:40727291-40726954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:6-282
               
               
               Cow position:chr7:32372956-32372684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:6-315
               
               
               Cow position:chr7:25104470-25104157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:6-317
               
               
               Cow position:chr7:66894440-66894750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):134, 84

               
               
               Conread position:6-318
               
               
               Cow position:chr7:39164488-39164177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 101

               
               
               Conread position:6-327
               
               
               Cow position:chr7:29300668-29300978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):224, 87

               
               
               Conread position:6-330
               
               
               Cow position:chr7:40074783-40074469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):90, 158

               
               
               Conread position:6-415
               
               
               Cow position:chr7:25722567-25722961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):180, 56

               
               
               Conread position:7-166
               
               
               Cow position:chr7:37466611-37466454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 90

               
               
               Conread position:7-239
               
               
               Cow position:chr7:19880947-19881173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:7-245
               
               
               Cow position:chr7:8272760-8272520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-285
               
               
               Cow position:chr7:39129510-39129770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:7-307
               
               
               Cow position:chr7:26012537-26012224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:7-307
               
               
               Cow position:chr7:30155850-30156158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:7-309
               
               
               Cow position:chr7:45709105-45709410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:7-318
               
               
               Cow position:chr7:25445495-25445190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:7-318
               
               
               Cow position:chr7:33386020-33385723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-318
               
               
               Cow position:chr7:43215608-43215301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:7-318
               
               
               Cow position:chr7:57537425-57537735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-330
               
               
               Cow position:chr7:21650197-21649878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:7-330
               
               
               Cow position:chr7:23657935-23657609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-330
               
               
               Cow position:chr7:40067759-40067435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 73

               
               
               Conread position:7-332
               
               
               Cow position:chr7:28095968-28095661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):235, 22

               
               
               Conread position:7-332
               
               
               Cow position:chr7:40321586-40321264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:7-332
               
               
               Cow position:chr7:40710226-40709884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:7-332
               
               
               Cow position:chr7:40894640-40894296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:7-332
               
               
               Cow position:chr7:42295979-42296294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):131, 46

               
               
               Conread position:7-334
               
               
               Cow position:chr7:23936209-23935889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 65

               
               
               Conread position:7-339
               
               
               Cow position:chr7:7507649-7507330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:7-368
               
               
               Cow position:chr7:22153256-22152894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:7-415
               
               
               Cow position:chr7:19797831-19798232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:7-415
               
               
               Cow position:chr7:52295227-52294835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:7-415
               
               
               Cow position:chr7:57911709-57911308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):175, 65

               
               
               Conread position:7-415
               
               
               Cow position:chr7:64228794-64229200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:8-290
               
               
               Cow position:chr7:32079549-32079276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:8-314
               
               
               Cow position:chr7:10550872-10551175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:8-318
               
               
               Cow position:chr7:60121621-60121305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:8-318
               
               
               Cow position:chr7:68868196-68867898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:8-326
               
               
               Cow position:chr7:40758140-40758465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:8-332
               
               
               Cow position:chr7:26887858-26888189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 105

               
               
               Conread position:9-139
               
               
               Cow position:chr7:63016330-63016202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 89

               
               
               Conread position:9-159
               
               
               Cow position:chr7:38429615-38429759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 89

               
               
               Conread position:9-162
               
               
               Cow position:chr7:18947651-18947796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-172
               
               
               Cow position:chr7:168570-168729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:9-189
               
               
               Cow position:chr7:24461047-24460882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:9-195
               
               
               Cow position:chr7:52208945-52209134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 164

               
               
               Conread position:9-198
               
               
               Cow position:chr7:51673483-51673665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-214
               
               
               Cow position:chr7:41745369-41745577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:9-219
               
               
               Cow position:chr7:1792352-1792568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 123

               
               
               Conread position:9-221
               
               
               Cow position:chr7:40425216-40425426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 72

               
               
               Conread position:9-221
               
               
               Cow position:chr7:51638471-51638677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:9-222
               
               
               Cow position:chr7:28544273-28544065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-222
               
               
               Cow position:chr7:49417702-49417493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:9-235
               
               
               Cow position:chr7:46105786-46106009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:9-235
               
               
               Cow position:chr7:68516594-68516803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-236
               
               
               Cow position:chr7:5853445-5853236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-237
               
               
               Cow position:chr7:2579141-2579370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-237
               
               
               Cow position:chr7:23636799-23636582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-240
               
               
               Cow position:chr7:12755059-12755273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-240
               
               
               Cow position:chr7:55085752-55085527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:9-241
               
               
               Cow position:chr7:21122163-21122389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:9-245
               
               
               Cow position:chr7:34412182-34412408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-245
               
               
               Cow position:chr7:58923494-58923261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-246
               
               
               Cow position:chr7:38263769-38263535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-252
               
               
               Cow position:chr7:14524575-14524341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 83

               
               
               Conread position:9-261
               
               
               Cow position:chr7:22651732-22651980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 5

               
               
               Conread position:9-264
               
               
               Cow position:chr7:46051752-46051498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:9-268
               
               
               Cow position:chr7:9800449-9800192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:9-279
               
               
               Cow position:chr7:25195638-25195363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:9-287
               
               
               Cow position:chr7:3773170-3773449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:9-290
               
               
               Cow position:chr7:10075115-10074833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 106

               
               
               Conread position:9-290
               
               
               Cow position:chr7:11011586-11011875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-290
               
               
               Cow position:chr7:12201817-12202099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:9-290
               
               
               Cow position:chr7:46856867-46857143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-290
               
               
               Cow position:chr7:51039528-51039249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-291
               
               
               Cow position:chr7:20534968-20534689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):217, 70

               
               
               Conread position:9-291
               
               
               Cow position:chr7:34223790-34223500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-291
               
               
               Cow position:chr7:51019874-51019603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):173, 78

               
               
               Conread position:9-293
               
               
               Cow position:chr7:35286544-35286817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-293
               
               
               Cow position:chr7:44454184-44454456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-294
               
               
               Cow position:chr7:26485669-26485386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 57

               
               
               Conread position:9-296
               
               
               Cow position:chr7:535620-535914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 140

               
               
               Conread position:9-296
               
               
               Cow position:chr7:64135371-64135653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-303
               
               
               Cow position:chr7:48667510-48667231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:9-304
               
               
               Cow position:chr7:4720135-4720431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:9-305
               
               
               Cow position:chr7:3283455-3283163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-305
               
               
               Cow position:chr7:3311935-3311643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-307
               
               
               Cow position:chr7:15566848-15566570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-307
               
               
               Cow position:chr7:25960562-25960272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-307
               
               
               Cow position:chr7:31694543-31694820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-308
               
               
               Cow position:chr7:55693956-55694249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):198, 29

               
               
               Conread position:9-309
               
               
               Cow position:chr7:1761827-1761517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:9-310
               
               
               Cow position:chr7:27990584-27990885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):128, 85

               
               
               Conread position:9-310
               
               
               Cow position:chr7:30276831-30276530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-311
               
               
               Cow position:chr7:23205533-23205835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-311
               
               
               Cow position:chr7:36665421-36665127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-311
               
               
               Cow position:chr7:50066020-50066316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):232, 78

               
               
               Conread position:9-311
               
               
               Cow position:chr7:58862788-58863083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-312
               
               
               Cow position:chr7:59075946-59075648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:9-314
               
               
               Cow position:chr7:33279901-33280196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):174, 40

               
               
               Conread position:9-314
               
               
               Cow position:chr7:44986750-44986451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-316
               
               
               Cow position:chr7:3336454-3336758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-316
               
               
               Cow position:chr7:38696939-38696639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:9-316
               
               
               Cow position:chr7:47547505-47547186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):129, 90

               
               
               Conread position:9-316
               
               
               Cow position:chr7:63378490-63378184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr7:1375790-1375485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:9-317
               
               
               Cow position:chr7:27387879-27388192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-317
               
               
               Cow position:chr7:44589762-44590056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-317
               
               
               Cow position:chr7:46116543-46116862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:9-317
               
               
               Cow position:chr7:52776663-52776963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-317
               
               
               Cow position:chr7:54513309-54513631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:9-317
               
               
               Cow position:chr7:58301843-58302155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-317
               
               
               Cow position:chr7:59246052-59245753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr7:4582632-4582946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr7:8868923-8868608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:9-318
               
               
               Cow position:chr7:11869744-11870040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr7:12408145-12408451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-318
               
               
               Cow position:chr7:17757129-17756828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-318
               
               
               Cow position:chr7:18965005-18964717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):241, 40

               
               
               Conread position:9-318
               
               
               Cow position:chr7:19267274-19267580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr7:24220764-24220461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 84

               
               
               Conread position:9-318
               
               
               Cow position:chr7:31094251-31094555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 73

               
               
               Conread position:9-318
               
               
               Cow position:chr7:32284017-32283702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:9-318
               
               
               Cow position:chr7:37952275-37951969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr7:39155210-39154897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr7:41293650-41293958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr7:44049274-44049575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr7:46823766-46823457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr7:47513588-47513900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr7:48406399-48406711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr7:59692169-59691862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-318
               
               
               Cow position:chr7:63749380-63749690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr7:64949203-64948911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-320
               
               
               Cow position:chr7:3026623-3026936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-321
               
               
               Cow position:chr7:59168361-59168063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:9-324
               
               
               Cow position:chr7:31170852-31171168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:9-324
               
               
               Cow position:chr7:39167559-39167248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 75

               
               
               Conread position:9-325
               
               
               Cow position:chr7:10943464-10943770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):221, 40

               
               
               Conread position:9-326
               
               
               Cow position:chr7:4418363-4418685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-326
               
               
               Cow position:chr7:19981750-19982057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-326
               
               
               Cow position:chr7:31315405-31315102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-326
               
               
               Cow position:chr7:33393405-33393094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):221, 82

               
               
               Conread position:9-326
               
               
               Cow position:chr7:33698051-33697754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-326
               
               
               Cow position:chr7:36717376-36717680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):233, 44

               
               
               Conread position:9-329
               
               
               Cow position:chr7:14005977-14005649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:9-330
               
               
               Cow position:chr7:1262125-1261800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):120, 84

               
               
               Conread position:9-331
               
               
               Cow position:chr7:38082252-38081932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 65

               
               
               Conread position:9-331
               
               
               Cow position:chr7:67820212-67819897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr7:1720874-1721193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-332
               
               
               Cow position:chr7:3256249-3256568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):90, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr7:9136934-9136614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr7:9193141-9193468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr7:11783332-11783643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr7:18388303-18388623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr7:22624006-22624330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr7:26911344-26911662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:9-332
               
               
               Cow position:chr7:34422175-34422486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:9-332
               
               
               Cow position:chr7:34433185-34433504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 77

               
               
               Conread position:9-332
               
               
               Cow position:chr7:36248193-36247886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-332
               
               
               Cow position:chr7:45331634-45331320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):223, 29

               
               
               Conread position:9-332
               
               
               Cow position:chr7:48243768-48243454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr7:53097687-53097374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr7:64268898-64269210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 81

               
               
               Conread position:9-333
               
               
               Cow position:chr7:23456725-23457042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:9-333
               
               
               Cow position:chr7:23568640-23568966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 29

               
               
               Conread position:9-333
               
               
               Cow position:chr7:25393395-25393064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:9-333
               
               
               Cow position:chr7:58967363-58967049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:9-335
               
               
               Cow position:chr7:14519945-14520265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-335
               
               
               Cow position:chr7:28563294-28563610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-336
               
               
               Cow position:chr7:30931881-30932203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-338
               
               
               Cow position:chr7:64572960-64573291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:9-340
               
               
               Cow position:chr7:33720131-33719820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:9-344
               
               
               Cow position:chr7:8777304-8776962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):98, 79

               
               
               Conread position:9-344
               
               
               Cow position:chr7:38060330-38060670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-345
               
               
               Cow position:chr7:39416006-39415668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:9-347
               
               
               Cow position:chr7:16022391-16022061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-349
               
               
               Cow position:chr7:17713375-17713705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-354
               
               
               Cow position:chr7:40405941-40405605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-356
               
               
               Cow position:chr7:25023362-25023706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-356
               
               
               Cow position:chr7:37455414-37455073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 84

               
               
               Conread position:9-358
               
               
               Cow position:chr7:63023242-63022889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-363
               
               
               Cow position:chr7:58867728-58867354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:9-364
               
               
               Cow position:chr7:25015024-25015376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-365
               
               
               Cow position:chr7:20505-20143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-368
               
               
               Cow position:chr7:25867404-25867766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:9-368
               
               
               Cow position:chr7:36830750-36830402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 6

               
               
               Conread position:9-413
               
               
               Cow position:chr7:25512028-25512419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-414
               
               
               Cow position:chr7:61552016-61551606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 143

               
               
               Conread position:9-415
               
               
               Cow position:chr7:4129684-4130092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-415
               
               
               Cow position:chr7:13593864-13593475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr7:26631716-26632110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr7:28917187-28916775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-415
               
               
               Cow position:chr7:40263561-40263970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):218, 36

               
               
               Conread position:9-415
               
               
               Cow position:chr7:45956025-45955609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 66

               
               
               Conread position:9-415
               
               
               Cow position:chr7:57258927-57259330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr7:60121122-60120710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 177

               
               
               Conread position:9-415
               
               
               Cow position:chr7:68170504-68170906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):212, 21

               
               
               Conread position:9-416
               
               
               Cow position:chr7:34428672-34428260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-416
               
               
               Cow position:chr7:67816994-67816596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 28

               
               
               Conread position:10-143
               
               
               Cow position:chr7:8089259-8089129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:10-235
               
               
               Cow position:chr7:68315332-68315123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:10-272
               
               
               Cow position:chr7:8375362-8375114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:10-296
               
               
               Cow position:chr7:48714949-48714659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-296
               
               
               Cow position:chr7:52536158-52536439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):110, 93

               
               
               Conread position:10-318
               
               
               Cow position:chr7:15755351-15755660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:10-318
               
               
               Cow position:chr7:27079722-27079423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-318
               
               
               Cow position:chr7:44596607-44596900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 25

               
               
               Conread position:10-318
               
               
               Cow position:chr7:49648452-49648152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:10-318
               
               
               Cow position:chr7:53053308-53053617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-415
               
               
               Cow position:chr7:26838763-26838354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:10-415
               
               
               Cow position:chr7:40189647-40189252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:11-232
               
               
               Cow position:chr7:29279926-29280133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:11-235
               
               
               Cow position:chr7:34214685-34214475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-235
               
               
               Cow position:chr7:43234350-43234564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-240
               
               
               Cow position:chr7:9781630-9781856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:11-274
               
               
               Cow position:chr7:3304671-3304402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:11-275
               
               
               Cow position:chr7:61790258-61790523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-277
               
               
               Cow position:chr7:20219746-20220009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-293
               
               
               Cow position:chr7:59031074-59030806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):151, 27

               
               
               Conread position:11-296
               
               
               Cow position:chr7:67873287-67872993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:11-309
               
               
               Cow position:chr7:23131692-23131395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 22

               
               
               Conread position:11-317
               
               
               Cow position:chr7:48547767-48548069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr7:14536187-14536482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:11-318
               
               
               Cow position:chr7:32316989-32316689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr7:45158216-45157922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):163, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr7:48359101-48358799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:11-318
               
               
               Cow position:chr7:53697813-53698126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:11-326
               
               
               Cow position:chr7:17816843-17816538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 77

               
               
               Conread position:11-326
               
               
               Cow position:chr7:19399582-19399895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-328
               
               
               Cow position:chr7:52751800-52752113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:11-331
               
               
               Cow position:chr7:20147246-20147555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-332
               
               
               Cow position:chr7:19230421-19230726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:11-332
               
               
               Cow position:chr7:39939830-39939514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):170, 82

               
               
               Conread position:11-332
               
               
               Cow position:chr7:40008923-40008593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:11-342
               
               
               Cow position:chr7:20176614-20176938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 37

               
               
               Conread position:11-358
               
               
               Cow position:chr7:41728038-41727688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:11-410
               
               
               Cow position:chr7:34670208-34669820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:11-415
               
               
               Cow position:chr7:8877974-8877577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:12-412
               
               
               Cow position:chr7:48815718-48815333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:13-264
               
               
               Cow position:chr7:1376230-1375990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 74

               
               
               Conread position:13-296
               
               
               Cow position:chr7:41327946-41328227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:14-203
               
               
               Cow position:chr7:50566110-50566291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):125, 76

               
               
               Conread position:14-258
               
               
               Cow position:chr7:1463965-1463731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:14-317
               
               
               Cow position:chr7:47931705-47932005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):125, 76

               
               
               Conread position:14-318
               
               
               Cow position:chr7:1558825-1558525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:14-318
               
               
               Cow position:chr7:2172835-2172546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:14-318
               
               
               Cow position:chr7:39518384-39518090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):167, 30

               
               
               Conread position:14-325
               
               
               Cow position:chr7:66266490-66266804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:14-332
               
               
               Cow position:chr7:50772641-50772956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:14-334
               
               
               Cow position:chr7:59843659-59843982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:14-355
               
               
               Cow position:chr7:147505-147163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 46

               
               
               Conread position:14-413
               
               
               Cow position:chr7:42429968-42429571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:15-200
               
               
               Cow position:chr7:4512721-4512903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 64

               
               
               Conread position:15-208
               
               
               Cow position:chr7:51063379-51063193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:15-301
               
               
               Cow position:chr7:13963301-13963009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:15-342
               
               
               Cow position:chr7:45747755-45748067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:15-363
               
               
               Cow position:chr7:24873005-24873351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):164, 71

               
               
               Conread position:16-293
               
               
               Cow position:chr7:69066785-69066511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:16-307
               
               
               Cow position:chr7:23177628-23177335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:16-317
               
               
               Cow position:chr7:15855237-15855518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:16-318
               
               
               Cow position:chr7:40192837-40192528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:16-342
               
               
               Cow position:chr7:51708292-51708623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:17-415
               
               
               Cow position:chr7:39930377-39929981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:18-255
               
               
               Cow position:chr7:20918262-20918496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 90

               
               
               Conread position:19-404
               
               
               Cow position:chr7:25703138-25703512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:20-203
               
               
               Cow position:chr7:58953760-58953587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:20-263
               
               
               Cow position:chr7:40336125-40335883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):119, 60

               
               
               Conread position:20-296
               
               
               Cow position:chr7:37697886-37697615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:20-305
               
               
               Cow position:chr7:39093841-39094112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:20-329
               
               
               Cow position:chr7:60547580-60547887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:20-415
               
               
               Cow position:chr7:42222857-42223247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):168, 68

               
               
               Conread position:21-246
               
               
               Cow position:chr7:6608314-6608082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:21-258
               
               
               Cow position:chr7:5212392-5212624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:21-264
               
               
               Cow position:chr7:40051675-40051916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):209, 51

               
               
               Conread position:21-272
               
               
               Cow position:chr7:36569947-36569682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:21-307
               
               
               Cow position:chr7:10122782-10122510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):221, 57

               
               
               Conread position:21-316
               
               
               Cow position:chr7:39161798-39161503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-318
               
               
               Cow position:chr7:2923732-2923431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr7:9075136-9074849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:21-318
               
               
               Cow position:chr7:22793428-22793136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:21-318
               
               
               Cow position:chr7:29510028-29509743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):222, 58

               
               
               Conread position:21-318
               
               
               Cow position:chr7:35893499-35893200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):118, 16

               
               
               Conread position:21-318
               
               
               Cow position:chr7:49751213-49750913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:21-318
               
               
               Cow position:chr7:66179706-66180011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-332
               
               
               Cow position:chr7:6058212-6057905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:21-332
               
               
               Cow position:chr7:23646695-23646378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:21-332
               
               
               Cow position:chr7:60483341-60483647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-344
               
               
               Cow position:chr7:41872016-41872327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):207, 58

               
               
               Conread position:22-317
               
               
               Cow position:chr7:47775944-47775659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):159, 66

               
               
               Conread position:22-328
               
               
               Cow position:chr7:63112692-63112992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:22-335
               
               
               Cow position:chr7:36278382-36278067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:22-412
               
               
               Cow position:chr7:42244617-42245008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:23-222
               
               
               Cow position:chr7:49783287-49783486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:23-229
               
               
               Cow position:chr7:7506049-7506253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 66

               
               
               Conread position:23-293
               
               
               Cow position:chr7:63946504-63946760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):116, 54

               
               
               Conread position:23-309
               
               
               Cow position:chr7:40303183-40303465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:23-311
               
               
               Cow position:chr7:51319881-51319596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:23-318
               
               
               Cow position:chr7:37142290-37142575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):159, 54

               
               
               Conread position:23-318
               
               
               Cow position:chr7:65689451-65689741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:23-332
               
               
               Cow position:chr7:18306758-18307067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):201, 12

               
               
               Conread position:23-333
               
               
               Cow position:chr7:27994287-27994595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):201, 12

               
               
               Conread position:23-403
               
               
               Cow position:chr7:20415206-20415591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 293

               
               
               Conread position:23-415
               
               
               Cow position:chr7:24767147-24767530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:25-203
               
               
               Cow position:chr7:27290442-27290624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:25-318
               
               
               Cow position:chr7:2896843-2896550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:25-318
               
               
               Cow position:chr7:22357402-22357700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:25-331
               
               
               Cow position:chr7:39988486-39988185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:25-413
               
               
               Cow position:chr7:53361308-53361677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:26-264
               
               
               Cow position:chr7:21565482-21565707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:26-318
               
               
               Cow position:chr7:10512631-10512923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):188, 53

               
               
               Conread position:26-318
               
               
               Cow position:chr7:35274998-35275282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-356
               
               
               Cow position:chr7:50095469-50095132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:26-414
               
               
               Cow position:chr7:62793876-62793485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:26-415
               
               
               Cow position:chr7:52718556-52718941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:27-188
               
               
               Cow position:chr7:18253579-18253425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:27-348
               
               
               Cow position:chr7:17967045-17967358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):207, 48

               
               
               Conread position:27-368
               
               
               Cow position:chr7:64331250-64330897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:27-417
               
               
               Cow position:chr7:28584325-28583945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:29-307
               
               
               Cow position:chr7:39444529-39444801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:29-415
               
               
               Cow position:chr7:32710901-32711280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:29-415
               
               
               Cow position:chr7:34554342-34553949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 67

               
               
               Conread position:29-415
               
               
               Cow position:chr7:59688622-59688237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 217

               
               
               Conread position:30-264
               
               
               Cow position:chr7:53763511-53763742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-318
               
               
               Cow position:chr7:42894519-42894240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:30-331
               
               
               Cow position:chr7:9145387-9145706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:30-332
               
               
               Cow position:chr7:48721824-48722130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-335
               
               
               Cow position:chr7:39160263-39159949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:31-259
               
               
               Cow position:chr7:36714553-36714786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:31-413
               
               
               Cow position:chr7:24778038-24778409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:31-415
               
               
               Cow position:chr7:61823777-61824153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:32-307
               
               
               Cow position:chr7:255739-256007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:32-318
               
               
               Cow position:chr7:39042671-39042393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:32-318
               
               
               Cow position:chr7:40567141-40566863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):199, 54

               
               
               Conread position:32-328
               
               
               Cow position:chr7:39102336-39102620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:32-331
               
               
               Cow position:chr7:11161317-11161022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:33-318
               
               
               Cow position:chr7:58428151-58427885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:33-332
               
               
               Cow position:chr7:32915182-32914887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:34-318
               
               
               Cow position:chr7:600407-600133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:34-337
               
               
               Cow position:chr7:27349166-27349454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:35-231
               
               
               Cow position:chr7:47172636-47172825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:35-245
               
               
               Cow position:chr7:2897239-2897027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:35-261
               
               
               Cow position:chr7:23251492-23251706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:35-290
               
               
               Cow position:chr7:24932342-24932596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:35-311
               
               
               Cow position:chr7:4892934-4892664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 55

               
               
               Conread position:35-318
               
               
               Cow position:chr7:11066553-11066265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:35-338
               
               
               Cow position:chr7:34162856-34162561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:36-317
               
               
               Cow position:chr7:18873282-18873003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 43

               
               
               Conread position:37-198
               
               
               Cow position:chr7:69133027-69132865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 57

               
               
               Conread position:38-191
               
               
               Cow position:chr7:53606258-53606401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:38-232
               
               
               Cow position:chr7:41393042-41392854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:38-240
               
               
               Cow position:chr7:47936848-47937047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:38-314
               
               
               Cow position:chr7:53269267-53268985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:38-316
               
               
               Cow position:chr7:40952791-40953071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:38-318
               
               
               Cow position:chr7:42460515-42460224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:38-415
               
               
               Cow position:chr7:69054614-69054257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):185, 29

               
               
               Conread position:39-193
               
               
               Cow position:chr7:31882019-31881872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:39-240
               
               
               Cow position:chr7:22828346-22828547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:39-310
               
               
               Cow position:chr7:27283746-27283476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:39-318
               
               
               Cow position:chr7:51072310-51072029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 42

               
               
               Conread position:39-331
               
               
               Cow position:chr7:21240050-21240332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:39-344
               
               
               Cow position:chr7:41445429-41445125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:39-363
               
               
               Cow position:chr7:64003532-64003218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:40-241
               
               
               Cow position:chr7:18188160-18188351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:40-318
               
               
               Cow position:chr7:44094869-44095152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 276

               
               
               Conread position:40-318
               
               
               Cow position:chr7:49942363-49942633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:40-408
               
               
               Cow position:chr7:32819884-32819519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:42-273
               
               
               Cow position:chr7:63913806-63914027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:42-332
               
               
               Cow position:chr7:46148922-46148641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:43-231
               
               
               Cow position:chr7:58350893-58351077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:43-318
               
               
               Cow position:chr7:63968150-63968412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:43-318
               
               
               Cow position:chr7:64102346-64102619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:43-331
               
               
               Cow position:chr7:12385208-12384934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:43-333
               
               
               Cow position:chr7:40305509-40305788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 55

               
               
               Conread position:43-365
               
               
               Cow position:chr7:34569250-34568943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):190, 12

               
               
               Conread position:43-415
               
               
               Cow position:chr7:40991767-40991399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:44-318
               
               
               Cow position:chr7:50075665-50075937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:44-318
               
               
               Cow position:chr7:53613205-53612935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:45-334
               
               
               Cow position:chr7:25860135-25860415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):143, 42

               
               
               Conread position:46-262
               
               
               Cow position:chr7:5300332-5300544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:46-308
               
               
               Cow position:chr7:61765377-61765113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:46-325
               
               
               Cow position:chr7:48020479-48020218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:46-332
               
               
               Cow position:chr7:53382263-53381969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 47

               
               
               Conread position:47-278
               
               
               Cow position:chr7:28428066-28427845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:47-293
               
               
               Cow position:chr7:11715773-11715518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:47-305
               
               
               Cow position:chr7:33805028-33804779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-328
               
               
               Cow position:chr7:7476389-7476663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:47-412
               
               
               Cow position:chr7:21573351-21572989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-415
               
               
               Cow position:chr7:12212541-12212914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:47-415
               
               
               Cow position:chr7:54090267-54089902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:49-357
               
               
               Cow position:chr7:56838436-56838747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:52-317
               
               
               Cow position:chr7:58614842-58614584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):135, 39

               
               
               Conread position:52-332
               
               
               Cow position:chr7:40324945-40324660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:54-415
               
               
               Cow position:chr7:34004401-34004068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:55-232
               
               
               Cow position:chr7:24564567-24564735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:55-245
               
               
               Cow position:chr7:43055654-43055833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:55-306
               
               
               Cow position:chr7:16220075-16220324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:55-317
               
               
               Cow position:chr7:60153501-60153226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:55-318
               
               
               Cow position:chr7:13928102-13928365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:55-318
               
               
               Cow position:chr7:35652022-35652290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:55-318
               
               
               Cow position:chr7:39528941-39529214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:56-332
               
               
               Cow position:chr7:15608455-15608186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:57-311
               
               
               Cow position:chr7:61817887-61818138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:57-332
               
               
               Cow position:chr7:3729136-3728866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:62-222
               
               
               Cow position:chr7:19846105-19846258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:62-282
               
               
               Cow position:chr7:59941667-59941447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:62-415
               
               
               Cow position:chr7:23619038-23619385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:63-318
               
               
               Cow position:chr7:28090276-28090030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:63-382
               
               
               Cow position:chr7:20081016-20081339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:64-260
               
               
               Cow position:chr7:35742360-35742558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:64-332
               
               
               Cow position:chr7:40571318-40571043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:66-237
               
               
               Cow position:chr7:7588431-7588596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:68-329
               
               
               Cow position:chr7:40916624-40916363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:70-229
               
               
               Cow position:chr7:33810724-33810565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:70-360
               
               
               Cow position:chr7:25263414-25263114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:73-220
               
               
               Cow position:chr7:58296855-58296997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:74-415
               
               
               Cow position:chr7:42431867-42431525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 256

               
               
               Conread position:77-415
               
               
               Cow position:chr7:8785998-8785667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:79-225
               
               
               Cow position:chr7:60960595-60960446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:79-311
               
               
               Cow position:chr7:14712168-14712397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:82-318
               
               
               Cow position:chr7:7142031-7142278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:82-363
               
               
               Cow position:chr7:14079137-14079424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:83-275
               
               
               Cow position:chr7:58362979-58362779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:84-258
               
               
               Cow position:chr7:30816261-30816437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-318
               
               
               Cow position:chr7:60749205-60748975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:84-331
               
               
               Cow position:chr7:62193593-62193340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr7:43711244-43710995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:85-318
               
               
               Cow position:chr7:35111591-35111361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):145, 18

               
               
               Conread position:85-364
               
               
               Cow position:chr7:50860033-50859755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):146, 29

               
               
               Conread position:86-293
               
               
               Cow position:chr7:11422659-11422457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:86-317
               
               
               Cow position:chr7:54712444-54712206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:87-222
               
               
               Cow position:chr7:8809812-8809674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:87-332
               
               
               Cow position:chr7:32824232-32824477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:87-432
               
               
               Cow position:chr7:53992723-53992385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:88-266
               
               
               Cow position:chr7:42840626-42840453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:88-311
               
               
               Cow position:chr7:41315412-41315642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:88-317
               
               
               Cow position:chr7:24213904-24213671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:88-318
               
               
               Cow position:chr7:26501441-26501668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 50

               
               
               Conread position:88-318
               
               
               Cow position:chr7:27509740-27509506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:88-328
               
               
               Cow position:chr7:53772307-53772535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:88-364
               
               
               Cow position:chr7:19896794-19897059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:89-290
               
               
               Cow position:chr7:51248845-51249056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:89-311
               
               
               Cow position:chr7:20794240-20794469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:89-316
               
               
               Cow position:chr7:14632397-14632168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:89-318
               
               
               Cow position:chr7:26665531-26665768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:89-318
               
               
               Cow position:chr7:34199350-34199114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:89-318
               
               
               Cow position:chr7:36746351-36746108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 208

               
               
               Conread position:89-318
               
               
               Cow position:chr7:59713494-59713254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):50, 221

               
               
               Conread position:89-324
               
               
               Cow position:chr7:37364814-37364579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:89-332
               
               
               Cow position:chr7:13985298-13985539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):182, 7

               
               
               Conread position:91-318
               
               
               Cow position:chr7:15570064-15569834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 220

               
               
               Conread position:91-318
               
               
               Cow position:chr7:20968449-20968221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:91-326
               
               
               Cow position:chr7:8812905-8813145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:91-332
               
               
               Cow position:chr7:23664068-23664322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:91-332
               
               
               Cow position:chr7:28324659-28324410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:91-415
               
               
               Cow position:chr7:34979406-34979069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:92-318
               
               
               Cow position:chr7:5914223-5913992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:92-318
               
               
               Cow position:chr7:39401980-39401744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:92-332
               
               
               Cow position:chr7:3175929-3176173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:93-331
               
               
               Cow position:chr7:63771925-63771679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 197

               
               
               Conread position:93-361
               
               
               Cow position:chr7:24718511-24718788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:94-316
               
               
               Cow position:chr7:53034303-53034521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:95-318
               
               
               Cow position:chr7:11176697-11176916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:95-318
               
               
               Cow position:chr7:31881693-31881477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:96-328
               
               
               Cow position:chr7:21327051-21326823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:97-318
               
               
               Cow position:chr7:14450355-14450144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:97-318
               
               
               Cow position:chr7:59645846-59646072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):134, 43

               
               
               Conread position:100-311
               
               
               Cow position:chr7:68173143-68173357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:101-318
               
               
               Cow position:chr7:205753-205544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):174, 39

               
               
               Conread position:101-318
               
               
               Cow position:chr7:21526396-21526616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:101-318
               
               
               Cow position:chr7:26915328-26915103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:101-332
               
               
               Cow position:chr7:6154998-6154758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 182

               
               
               Conread position:101-332
               
               
               Cow position:chr7:47503670-47503434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:101-338
               
               
               Cow position:chr7:40311330-40311573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:101-341
               
               
               Cow position:chr7:18858357-18858107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:102-318
               
               
               Cow position:chr7:67433923-67433715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:104-305
               
               
               Cow position:chr7:62603193-62602986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:104-318
               
               
               Cow position:chr7:35779459-35779239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:104-318
               
               
               Cow position:chr7:45658379-45658595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:105-318
               
               
               Cow position:chr7:37718549-37718345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:105-318
               
               
               Cow position:chr7:66748518-66748735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-332
               
               
               Cow position:chr7:62361864-62361649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:106-289
               
               
               Cow position:chr7:12995166-12994977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:106-296
               
               
               Cow position:chr7:14029328-14029147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:106-316
               
               
               Cow position:chr7:23679585-23679804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-326
               
               
               Cow position:chr7:10942843-10943074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:106-326
               
               
               Cow position:chr7:29010390-29010610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):183, 34

               
               
               Conread position:106-332
               
               
               Cow position:chr7:12658987-12659223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:106-334
               
               
               Cow position:chr7:47046468-47046258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:106-344
               
               
               Cow position:chr7:52382973-52383209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:107-293
               
               
               Cow position:chr7:14174411-14174594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:107-337
               
               
               Cow position:chr7:62553445-62553213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:107-358
               
               
               Cow position:chr7:36996376-36996127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:107-415
               
               
               Cow position:chr7:61129227-61128919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 182

               
               
               Conread position:108-318
               
               
               Cow position:chr7:63085563-63085351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:108-332
               
               
               Cow position:chr7:25083697-25083467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:108-415
               
               
               Cow position:chr7:34716252-34715938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:109-318
               
               
               Cow position:chr7:14542055-14542262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:109-364
               
               
               Cow position:chr7:22730213-22729948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:112-257
               
               
               Cow position:chr7:27359475-27359624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:113-332
               
               
               Cow position:chr7:33068296-33068525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-332
               
               
               Cow position:chr7:36129002-36128772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:114-316
               
               
               Cow position:chr7:68753689-68753896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 190

               
               
               Conread position:115-292
               
               
               Cow position:chr7:43184799-43184610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:115-318
               
               
               Cow position:chr7:43109533-43109742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 162

               
               
               Conread position:115-334
               
               
               Cow position:chr7:19616704-19616922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:116-309
               
               
               Cow position:chr7:61601381-61601584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:117-317
               
               
               Cow position:chr7:27136497-27136287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:117-318
               
               
               Cow position:chr7:57162147-57161938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-415
               
               
               Cow position:chr7:14187243-14187540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:120-415
               
               
               Cow position:chr7:52550762-52550472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:121-364
               
               
               Cow position:chr7:52130772-52131025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:123-293
               
               
               Cow position:chr7:23057737-23057914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:123-293
               
               
               Cow position:chr7:44697869-44697709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:123-330
               
               
               Cow position:chr7:56820583-56820794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:123-338
               
               
               Cow position:chr7:10448791-10449013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:127-329
               
               
               Cow position:chr7:58841640-58841430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 180

               
               
               Conread position:129-318
               
               
               Cow position:chr7:20780136-20779940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 172

               
               
               Conread position:130-318
               
               
               Cow position:chr7:4138747-4138934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:130-330
               
               
               Cow position:chr7:17782697-17782895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:131-318
               
               
               Cow position:chr7:63299247-63299056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:133-307
               
               
               Cow position:chr7:40406636-40406463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:133-332
               
               
               Cow position:chr7:21316089-21315884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:134-318
               
               
               Cow position:chr7:40070415-40070233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:135-356
               
               
               Cow position:chr7:29345957-29346185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:138-307
               
               
               Cow position:chr7:30172113-30172272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:138-318
               
               
               Cow position:chr7:60458960-60459144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:138-325
               
               
               Cow position:chr7:25496707-25496523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:146-415
               
               
               Cow position:chr7:54583640-54583382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:149-305
               
               
               Cow position:chr7:6077747-6077910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:149-318
               
               
               Cow position:chr7:11160034-11160212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:150-297
               
               
               Cow position:chr7:8090423-8090566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:150-315
               
               
               Cow position:chr7:51086140-51085970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:150-318
               
               
               Cow position:chr7:57244126-57244300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-348
               
               
               Cow position:chr7:20827659-20827856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:152-332
               
               
               Cow position:chr7:268954-268771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:152-332
               
               
               Cow position:chr7:39325700-39325518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:155-333
               
               
               Cow position:chr7:5242075-5241893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:156-318
               
               
               Cow position:chr7:32221964-32221807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:156-318
               
               
               Cow position:chr7:48899886-48900050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:156-350
               
               
               Cow position:chr7:56081476-56081288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:157-415
               
               
               Cow position:chr7:10445379-10445653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:161-311
               
               
               Cow position:chr7:27072928-27073083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:161-348
               
               
               Cow position:chr7:49395607-49395798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:163-317
               
               
               Cow position:chr7:13645406-13645564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:164-344
               
               
               Cow position:chr7:46928936-46928744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:168-326
               
               
               Cow position:chr7:43484616-43484780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:170-318
               
               
               Cow position:chr7:28561105-28561263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:171-334
               
               
               Cow position:chr7:48695742-48695569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:173-357
               
               
               Cow position:chr7:48012250-48012064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:173-367
               
               
               Cow position:chr7:68522891-68523089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:179-352
               
               
               Cow position:chr7:37317755-37317930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 100

               
               
               Conread position:180-331
               
               
               Cow position:chr7:57517818-57517667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:184-348
               
               
               Cow position:chr7:1350384-1350550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 90

               
               
               Conread position:189-332
               
               
               Cow position:chr7:44039410-44039267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:248-364
               
               
               Cow position:chr7:12424156-12424040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-205
               
               
               Cow position:chr8:31814970-31815171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 78

               
               
               Conread position:1-237
               
               
               Cow position:chr8:39845689-39845465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:1-240
               
               
               Cow position:chr8:32202223-32202462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 153

               
               
               Conread position:1-253
               
               
               Cow position:chr8:51695310-51695548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:1-268
               
               
               Cow position:chr8:27138720-27138981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:1-282
               
               
               Cow position:chr8:39181694-39181979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-296
               
               
               Cow position:chr8:8097192-8097490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:1-296
               
               
               Cow position:chr8:47890331-47890042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:1-307
               
               
               Cow position:chr8:30419118-30418810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:1-315
               
               
               Cow position:chr8:52863889-52863573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:1-317
               
               
               Cow position:chr8:43687629-43687299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr8:43857988-43858293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-318
               
               
               Cow position:chr8:34799760-34799430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-318
               
               
               Cow position:chr8:43112772-43113058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:1-328
               
               
               Cow position:chr8:59043023-59043353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:1-330
               
               
               Cow position:chr8:26386142-26386467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):5, 48

               
               
               Conread position:1-332
               
               
               Cow position:chr8:18049669-18049347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-332
               
               
               Cow position:chr8:47751839-47752175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:1-334
               
               
               Cow position:chr8:47328417-47328086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-335
               
               
               Cow position:chr8:24371641-24371976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:1-414
               
               
               Cow position:chr8:46952589-46952201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 90

               
               
               Conread position:1-415
               
               
               Cow position:chr8:10942671-10943066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:2-211
               
               
               Cow position:chr8:1936920-1936715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):137, 91

               
               
               Conread position:2-241
               
               
               Cow position:chr8:35520105-35519867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 86

               
               
               Conread position:2-242
               
               
               Cow position:chr8:35563407-35563169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):137, 86

               
               
               Conread position:2-332
               
               
               Cow position:chr8:554113-554442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):127, 77

               
               
               Conread position:2-332
               
               
               Cow position:chr8:33974631-33974318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):137, 77

               
               
               Conread position:2-342
               
               
               Cow position:chr8:31313973-31313626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:3-296
               
               
               Cow position:chr8:50937850-50937562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):136, 59

               
               
               Conread position:3-318
               
               
               Cow position:chr8:32079611-32079927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:3-343
               
               
               Cow position:chr8:12660684-12661014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:3-362
               
               
               Cow position:chr8:32720042-32719696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:3-399
               
               
               Cow position:chr8:7149629-7150008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:3-415
               
               
               Cow position:chr8:24498314-24497921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 40

               
               
               Conread position:4-293
               
               
               Cow position:chr8:45689832-45690118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:4-318
               
               
               Cow position:chr8:29030015-29030338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:5-311
               
               
               Cow position:chr8:28509415-28509727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:7-192
               
               
               Cow position:chr8:22183775-22183601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:7-210
               
               
               Cow position:chr8:37334239-37334042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:7-232
               
               
               Cow position:chr8:19512394-19512615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:7-245
               
               
               Cow position:chr8:43439678-43439446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:7-252
               
               
               Cow position:chr8:38137490-38137250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:7-286
               
               
               Cow position:chr8:28221499-28221777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-293
               
               
               Cow position:chr8:45486665-45486392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:7-312
               
               
               Cow position:chr8:39144811-39144526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr8:16487235-16487545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:7-318
               
               
               Cow position:chr8:32620916-32621239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:7-318
               
               
               Cow position:chr8:35583491-35583801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 193

               
               
               Conread position:7-318
               
               
               Cow position:chr8:37123032-37122729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-324
               
               
               Cow position:chr8:7609868-7610175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 116

               
               
               Conread position:7-328
               
               
               Cow position:chr8:42138981-42139294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-331
               
               
               Cow position:chr8:1394298-1393975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:7-332
               
               
               Cow position:chr8:25871795-25871467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-338
               
               
               Cow position:chr8:22756087-22755763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:7-408
               
               
               Cow position:chr8:49687151-49687561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:7-415
               
               
               Cow position:chr8:21220220-21219820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):174, 97

               
               
               Conread position:8-318
               
               
               Cow position:chr8:60455252-60454953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:8-352
               
               
               Cow position:chr8:2897550-2897897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:9-166
               
               
               Cow position:chr8:4525146-4524998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-167
               
               
               Cow position:chr8:55283869-55283712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-176
               
               
               Cow position:chr8:53552740-53552582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-177
               
               
               Cow position:chr8:52197392-52197556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:9-178
               
               
               Cow position:chr8:40579349-40579510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-180
               
               
               Cow position:chr8:13813358-13813523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:9-187
               
               
               Cow position:chr8:36768540-36768367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-191
               
               
               Cow position:chr8:13723474-13723298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-191
               
               
               Cow position:chr8:54177650-54177824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-197
               
               
               Cow position:chr8:3922651-3922836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-201
               
               
               Cow position:chr8:43228038-43227851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:9-208
               
               
               Cow position:chr8:37862636-37862450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-209
               
               
               Cow position:chr8:25388203-25388013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-209
               
               
               Cow position:chr8:28228310-28228118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-212
               
               
               Cow position:chr8:40143787-40143986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):129, 82

               
               
               Conread position:9-216
               
               
               Cow position:chr8:33815051-33814851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:9-217
               
               
               Cow position:chr8:37391295-37391494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:9-217
               
               
               Cow position:chr8:45447031-45447239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-221
               
               
               Cow position:chr8:37292025-37292227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-221
               
               
               Cow position:chr8:58171499-58171295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-222
               
               
               Cow position:chr8:48956008-48955793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:9-223
               
               
               Cow position:chr8:21858653-21858848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:9-227
               
               
               Cow position:chr8:935770-935560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-229
               
               
               Cow position:chr8:39807664-39807445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:9-230
               
               
               Cow position:chr8:53633158-53633381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 74

               
               
               Conread position:9-235
               
               
               Cow position:chr8:39174178-39174401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-235
               
               
               Cow position:chr8:60126914-60126697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-236
               
               
               Cow position:chr8:11783050-11782826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:9-237
               
               
               Cow position:chr8:27731102-27730885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-240
               
               
               Cow position:chr8:4552683-4552926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 88

               
               
               Conread position:9-245
               
               
               Cow position:chr8:21083226-21083455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-246
               
               
               Cow position:chr8:29149800-29150037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:9-254
               
               
               Cow position:chr8:9509829-9510062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-256
               
               
               Cow position:chr8:5894009-5893763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:9-260
               
               
               Cow position:chr8:19011730-19011974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-262
               
               
               Cow position:chr8:20783199-20783449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:9-262
               
               
               Cow position:chr8:30892937-30893186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:9-274
               
               
               Cow position:chr8:28313657-28313923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-277
               
               
               Cow position:chr8:33406782-33407049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):221, 70

               
               
               Conread position:9-277
               
               
               Cow position:chr8:57208413-57208681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:9-279
               
               
               Cow position:chr8:1620661-1620928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:9-279
               
               
               Cow position:chr8:6484866-6485139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-282
               
               
               Cow position:chr8:16031514-16031778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-282
               
               
               Cow position:chr8:54031944-54031671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:9-287
               
               
               Cow position:chr8:24328790-24329058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):180, 53

               
               
               Conread position:9-288
               
               
               Cow position:chr8:1187986-1187718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:9-288
               
               
               Cow position:chr8:50310786-50311057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:9-290
               
               
               Cow position:chr8:21382626-21382909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-291
               
               
               Cow position:chr8:51694749-51695015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:9-296
               
               
               Cow position:chr8:35504168-35504456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:9-300
               
               
               Cow position:chr8:5980008-5979719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-302
               
               
               Cow position:chr8:11278040-11278341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-303
               
               
               Cow position:chr8:5224980-5225264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-307
               
               
               Cow position:chr8:3446032-3446314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:9-307
               
               
               Cow position:chr8:14947231-14947537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:9-309
               
               
               Cow position:chr8:53558545-53558836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):172, 28

               
               
               Conread position:9-309
               
               
               Cow position:chr8:59131340-59131633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:9-310
               
               
               Cow position:chr8:20684037-20683738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-311
               
               
               Cow position:chr8:29624904-29625199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:9-313
               
               
               Cow position:chr8:35991115-35990810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:9-314
               
               
               Cow position:chr8:45879099-45878806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:9-314
               
               
               Cow position:chr8:45925681-45925388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:9-317
               
               
               Cow position:chr8:9315967-9315669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:9-318
               
               
               Cow position:chr8:1024024-1023718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-318
               
               
               Cow position:chr8:2774851-2774543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr8:7064222-7064514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr8:8323805-8324103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):127, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr8:9050973-9051258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:9-318
               
               
               Cow position:chr8:12058789-12058471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):125, 8

               
               
               Conread position:9-318
               
               
               Cow position:chr8:17179969-17180268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr8:19642533-19642228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr8:23179480-23179788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chr8:24129193-24128876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr8:25579602-25579299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):234, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr8:31762756-31763059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:9-318
               
               
               Cow position:chr8:32988806-32988503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-318
               
               
               Cow position:chr8:33693571-33693258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:9-318
               
               
               Cow position:chr8:35971915-35971603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:9-318
               
               
               Cow position:chr8:36375451-36375754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr8:37298542-37298237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:9-318
               
               
               Cow position:chr8:37571639-37571949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chr8:41627051-41627363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-318
               
               
               Cow position:chr8:44704151-44703848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:9-318
               
               
               Cow position:chr8:46964800-46964473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 145

               
               
               Conread position:9-318
               
               
               Cow position:chr8:47664841-47665149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:9-318
               
               
               Cow position:chr8:53362792-53363092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:9-318
               
               
               Cow position:chr8:53383469-53383163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:9-318
               
               
               Cow position:chr8:55360629-55360323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:9-320
               
               
               Cow position:chr8:9681346-9681643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:9-321
               
               
               Cow position:chr8:28294782-28295091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):158, 70

               
               
               Conread position:9-325
               
               
               Cow position:chr8:11612613-11612298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:9-326
               
               
               Cow position:chr8:4940254-4940559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-326
               
               
               Cow position:chr8:8986880-8987187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):224, 74

               
               
               Conread position:9-326
               
               
               Cow position:chr8:20563699-20564013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-326
               
               
               Cow position:chr8:36249353-36249668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):172, 84

               
               
               Conread position:9-326
               
               
               Cow position:chr8:43027589-43027905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 6

               
               
               Conread position:9-326
               
               
               Cow position:chr8:58520359-58520052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:9-327
               
               
               Cow position:chr8:13661089-13660783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):223, 41

               
               
               Conread position:9-328
               
               
               Cow position:chr8:9942460-9942777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr8:11606391-11606082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 74

               
               
               Conread position:9-328
               
               
               Cow position:chr8:50709119-50708795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-329
               
               
               Cow position:chr8:1297575-1297263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-330
               
               
               Cow position:chr8:29026572-29026870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 86

               
               
               Conread position:9-331
               
               
               Cow position:chr8:21206945-21206628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-331
               
               
               Cow position:chr8:55829281-55829593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):221, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr8:537848-538171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr8:4924632-4924307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:9-332
               
               
               Cow position:chr8:5177250-5176928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr8:10970899-10970571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 82

               
               
               Conread position:9-332
               
               
               Cow position:chr8:24201983-24201647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 303

               
               
               Conread position:9-332
               
               
               Cow position:chr8:24513082-24513394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-332
               
               
               Cow position:chr8:26625933-26625618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr8:27661926-27661605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 44

               
               
               Conread position:9-332
               
               
               Cow position:chr8:31776256-31775927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-332
               
               
               Cow position:chr8:35456777-35457099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-332
               
               
               Cow position:chr8:35827739-35828061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:9-332
               
               
               Cow position:chr8:38573159-38573478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:9-332
               
               
               Cow position:chr8:38861637-38861951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):221, 79

               
               
               Conread position:9-332
               
               
               Cow position:chr8:48512948-48513263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-332
               
               
               Cow position:chr8:57389351-57389032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:9-333
               
               
               Cow position:chr8:15391094-15391409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:9-333
               
               
               Cow position:chr8:20339340-20339028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):168, 28

               
               
               Conread position:9-334
               
               
               Cow position:chr8:10400363-10400049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):205, 16

               
               
               Conread position:9-334
               
               
               Cow position:chr8:43795291-43794970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 80

               
               
               Conread position:9-334
               
               
               Cow position:chr8:48527901-48528210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-335
               
               
               Cow position:chr8:9168752-9169063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-335
               
               
               Cow position:chr8:15394796-15395114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):127, 16

               
               
               Conread position:9-339
               
               
               Cow position:chr8:20157695-20158025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-340
               
               
               Cow position:chr8:36505441-36505104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-354
               
               
               Cow position:chr8:24867677-24868024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:9-356
               
               
               Cow position:chr8:10263100-10263443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-358
               
               
               Cow position:chr8:45127638-45127979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-365
               
               
               Cow position:chr8:35580570-35580918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):238, 70

               
               
               Conread position:9-405
               
               
               Cow position:chr8:28884902-28884492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 120

               
               
               Conread position:9-414
               
               
               Cow position:chr8:17046697-17047092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:9-415
               
               
               Cow position:chr8:1253024-1252625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 105

               
               
               Conread position:9-415
               
               
               Cow position:chr8:9130863-9131266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr8:17199367-17199768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:9-415
               
               
               Cow position:chr8:20307042-20306644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr8:20837185-20836796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-415
               
               
               Cow position:chr8:21077648-21077265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-415
               
               
               Cow position:chr8:30324388-30323996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 208

               
               
               Conread position:9-415
               
               
               Cow position:chr8:38596160-38596550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 31

               
               
               Conread position:9-415
               
               
               Cow position:chr8:38894077-38893676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:9-415
               
               
               Cow position:chr8:43167963-43168356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:9-415
               
               
               Cow position:chr8:47342802-47342403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:10-204
               
               
               Cow position:chr8:5867141-5866952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:10-205
               
               
               Cow position:chr8:6753997-6753800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:10-218
               
               
               Cow position:chr8:5515770-5515573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:10-241
               
               
               Cow position:chr8:19475019-19475249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:10-258
               
               
               Cow position:chr8:47284006-47284246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):170, 71

               
               
               Conread position:10-290
               
               
               Cow position:chr8:31297330-31297054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):129, 67

               
               
               Conread position:10-293
               
               
               Cow position:chr8:60488563-60488843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:10-296
               
               
               Cow position:chr8:53214261-53214544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:10-330
               
               
               Cow position:chr8:53429839-53429519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):171, 77

               
               
               Conread position:10-415
               
               
               Cow position:chr8:10297673-10298067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-415
               
               
               Cow position:chr8:18730511-18730105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:10-415
               
               
               Cow position:chr8:45244967-45245344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):171, 76

               
               
               Conread position:10-415
               
               
               Cow position:chr8:47549880-47550267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):129, 45

               
               
               Conread position:11-256
               
               
               Cow position:chr8:37882408-37882171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-272
               
               
               Cow position:chr8:61128634-61128902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:11-274
               
               
               Cow position:chr8:8190001-8190267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-279
               
               
               Cow position:chr8:39592651-39592383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:11-279
               
               
               Cow position:chr8:45071852-45072120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):90, 67

               
               
               Conread position:11-285
               
               
               Cow position:chr8:31690873-31690592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:11-303
               
               
               Cow position:chr8:20926568-20926864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:11-303
               
               
               Cow position:chr8:34287987-34287700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:11-315
               
               
               Cow position:chr8:1169220-1169507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:11-317
               
               
               Cow position:chr8:26229019-26228717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:11-317
               
               
               Cow position:chr8:37167806-37167510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-318
               
               
               Cow position:chr8:12795887-12795573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 203

               
               
               Conread position:11-318
               
               
               Cow position:chr8:20212438-20212749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:11-318
               
               
               Cow position:chr8:39066284-39065969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr8:43190970-43191267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 18

               
               
               Conread position:11-318
               
               
               Cow position:chr8:51904975-51905287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:11-326
               
               
               Cow position:chr8:42762368-42762678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-326
               
               
               Cow position:chr8:55305144-55304825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-332
               
               
               Cow position:chr8:1999692-1999368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 205

               
               
               Conread position:11-332
               
               
               Cow position:chr8:2163841-2164163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:11-332
               
               
               Cow position:chr8:25455468-25455150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:11-333
               
               
               Cow position:chr8:48775882-48775558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:11-342
               
               
               Cow position:chr8:6724275-6724607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:11-352
               
               
               Cow position:chr8:60320585-60320246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:11-368
               
               
               Cow position:chr8:6073753-6074089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):129, 53

               
               
               Conread position:11-396
               
               
               Cow position:chr8:24237815-24237441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-413
               
               
               Cow position:chr8:46799221-46799634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):65, 340

               
               
               Conread position:11-415
               
               
               Cow position:chr8:8134436-8134844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-415
               
               
               Cow position:chr8:21222255-21221870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):164, 77

               
               
               Conread position:12-415
               
               
               Cow position:chr8:13975953-13975559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:13-296
               
               
               Cow position:chr8:669504-669786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):75, 102

               
               
               Conread position:13-318
               
               
               Cow position:chr8:38681939-38681637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:13-415
               
               
               Cow position:chr8:25591876-25591487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:13-415
               
               
               Cow position:chr8:26651351-26650974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:14-201
               
               
               Cow position:chr8:48422877-48422695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:14-235
               
               
               Cow position:chr8:37347395-37347611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:14-264
               
               
               Cow position:chr8:26304331-26304590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):125, 72

               
               
               Conread position:14-315
               
               
               Cow position:chr8:8668127-8668437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 191

               
               
               Conread position:14-318
               
               
               Cow position:chr8:3015541-3015229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:14-318
               
               
               Cow position:chr8:8924286-8924588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:14-318
               
               
               Cow position:chr8:13221794-13222084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):169, 79

               
               
               Conread position:14-318
               
               
               Cow position:chr8:18831803-18831497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:14-318
               
               
               Cow position:chr8:19995673-19995972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):125, 58

               
               
               Conread position:14-326
               
               
               Cow position:chr8:60746700-60746394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:14-332
               
               
               Cow position:chr8:58183243-58183565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:14-415
               
               
               Cow position:chr8:19998024-19998415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):127, 65

               
               
               Conread position:15-325
               
               
               Cow position:chr8:11942628-11942343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:15-415
               
               
               Cow position:chr8:3704682-3704290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:16-252
               
               
               Cow position:chr8:23585895-23586129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 7

               
               
               Conread position:16-413
               
               
               Cow position:chr8:20673722-20674118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):223, 64

               
               
               Conread position:16-413
               
               
               Cow position:chr8:31253871-31253479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:17-415
               
               
               Cow position:chr8:45493936-45493550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):163, 76

               
               
               Conread position:18-318
               
               
               Cow position:chr8:6816614-6816914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:19-172
               
               
               Cow position:chr8:18033867-18034017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:19-264
               
               
               Cow position:chr8:30463447-30463204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):223, 77

               
               
               Conread position:19-316
               
               
               Cow position:chr8:8010958-8010664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:19-405
               
               
               Cow position:chr8:1107134-1107525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:20-187
               
               
               Cow position:chr8:55095935-55095777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 71

               
               
               Conread position:20-221
               
               
               Cow position:chr8:32827619-32827817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):119, 54

               
               
               Conread position:20-239
               
               
               Cow position:chr8:1012032-1011821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):119, 42

               
               
               Conread position:20-245
               
               
               Cow position:chr8:31794754-31794990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 228

               
               
               Conread position:20-245
               
               
               Cow position:chr8:46119538-46119317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:20-290
               
               
               Cow position:chr8:24390143-24390413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 47

               
               
               Conread position:20-307
               
               
               Cow position:chr8:40888147-40888431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-317
               
               
               Cow position:chr8:53485753-53485465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-318
               
               
               Cow position:chr8:9517120-9517423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:20-328
               
               
               Cow position:chr8:29765314-29765003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:20-332
               
               
               Cow position:chr8:642522-642813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:20-332
               
               
               Cow position:chr8:10699411-10699713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):161, 40

               
               
               Conread position:20-354
               
               
               Cow position:chr8:22273917-22273582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:20-358
               
               
               Cow position:chr8:47135957-47136293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 72

               
               
               Conread position:20-364
               
               
               Cow position:chr8:225313-225653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:20-415
               
               
               Cow position:chr8:56886364-56885989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):155, 71

               
               
               Conread position:21-233
               
               
               Cow position:chr8:59507024-59507232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:21-243
               
               
               Cow position:chr8:55885026-55884809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:21-264
               
               
               Cow position:chr8:4500545-4500299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-296
               
               
               Cow position:chr8:5933988-5934265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:21-296
               
               
               Cow position:chr8:20102726-20102992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):168, 32

               
               
               Conread position:21-318
               
               
               Cow position:chr8:2865956-2865665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):211, 34

               
               
               Conread position:21-318
               
               
               Cow position:chr8:6076499-6076783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:21-318
               
               
               Cow position:chr8:25349765-25349466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-318
               
               
               Cow position:chr8:32984049-32984350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-330
               
               
               Cow position:chr8:60989688-60989394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:21-331
               
               
               Cow position:chr8:39630825-39630515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:21-345
               
               
               Cow position:chr8:23026757-23026435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:22-268
               
               
               Cow position:chr8:50315127-50315358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):208, 76

               
               
               Conread position:22-342
               
               
               Cow position:chr8:33287216-33286905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:23-314
               
               
               Cow position:chr8:3976285-3975982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):91, 70

               
               
               Conread position:23-332
               
               
               Cow position:chr8:24471703-24471391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:23-340
               
               
               Cow position:chr8:18081587-18081273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:23-348
               
               
               Cow position:chr8:42794271-42794582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:24-318
               
               
               Cow position:chr8:1303957-1303664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:24-318
               
               
               Cow position:chr8:18395770-18395492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:25-285
               
               
               Cow position:chr8:59438231-59438493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:25-318
               
               
               Cow position:chr8:6232847-6233140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:25-413
               
               
               Cow position:chr8:688210-688582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):214, 5

               
               
               Conread position:26-318
               
               
               Cow position:chr8:9641406-9641111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:26-318
               
               
               Cow position:chr8:29262829-29262540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:26-318
               
               
               Cow position:chr8:55716803-55716513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:26-332
               
               
               Cow position:chr8:58876117-58875820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 71

               
               
               Conread position:26-340
               
               
               Cow position:chr8:948583-948282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):208, 25

               
               
               Conread position:27-232
               
               
               Cow position:chr8:26008928-26008728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:27-317
               
               
               Cow position:chr8:1473113-1472821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 137

               
               
               Conread position:27-332
               
               
               Cow position:chr8:45781619-45781923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):203, 58

               
               
               Conread position:28-318
               
               
               Cow position:chr8:46235744-46235458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):198, 51

               
               
               Conread position:28-412
               
               
               Cow position:chr8:46203314-46202949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):306, 45

               
               
               Conread position:29-314
               
               
               Cow position:chr8:21078583-21078298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):208, 51

               
               
               Conread position:29-332
               
               
               Cow position:chr8:18207091-18207403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:29-431
               
               
               Cow position:chr8:58417734-58417342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):174, 61

               
               
               Conread position:30-205
               
               
               Cow position:chr8:35210883-35211048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:30-232
               
               
               Cow position:chr8:3872056-3872268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:30-318
               
               
               Cow position:chr8:38780754-38780468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-332
               
               
               Cow position:chr8:30244793-30245081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:30-354
               
               
               Cow position:chr8:41914483-41914789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:30-364
               
               
               Cow position:chr8:41905575-41905891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:31-230
               
               
               Cow position:chr8:16507744-16507939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:31-235
               
               
               Cow position:chr8:37173030-37173224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:33-325
               
               
               Cow position:chr8:37809585-37809876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:33-332
               
               
               Cow position:chr8:48437360-48437657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:35-318
               
               
               Cow position:chr8:29958445-29958185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:35-332
               
               
               Cow position:chr8:12303494-12303190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:35-349
               
               
               Cow position:chr8:53866149-53865830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:38-180
               
               
               Cow position:chr8:55900986-55901127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:38-232
               
               
               Cow position:chr8:41900600-41900793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:38-257
               
               
               Cow position:chr8:11135226-11135433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-264
               
               
               Cow position:chr8:39544819-39544586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:38-317
               
               
               Cow position:chr8:28412577-28412853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:38-318
               
               
               Cow position:chr8:35555516-35555811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:38-318
               
               
               Cow position:chr8:51319008-51318729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:38-332
               
               
               Cow position:chr8:16972489-16972786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:38-332
               
               
               Cow position:chr8:36397882-36398172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:38-413
               
               
               Cow position:chr8:42607243-42607606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:38-415
               
               
               Cow position:chr8:21961283-21960919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:39-296
               
               
               Cow position:chr8:20112149-20111891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:40-219
               
               
               Cow position:chr8:51480797-51480969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:41-318
               
               
               Cow position:chr8:35965994-35966275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:43-230
               
               
               Cow position:chr8:5450569-5450757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 98

               
               
               Conread position:43-366
               
               
               Cow position:chr8:44437793-44437477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:44-310
               
               
               Cow position:chr8:32295698-32295973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:44-318
               
               
               Cow position:chr8:4821198-4821467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:44-344
               
               
               Cow position:chr8:24952378-24952066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 45

               
               
               Conread position:44-414
               
               
               Cow position:chr8:3891394-3891759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:45-331
               
               
               Cow position:chr8:39475471-39475184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):143, 17

               
               
               Conread position:45-333
               
               
               Cow position:chr8:39721695-39721408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 6

               
               
               Conread position:46-318
               
               
               Cow position:chr8:61567348-61567609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:47-205
               
               
               Cow position:chr8:19975786-19975941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:47-293
               
               
               Cow position:chr8:39556010-39555760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-316
               
               
               Cow position:chr8:1834948-1834681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:47-317
               
               
               Cow position:chr8:10802137-10802410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 23

               
               
               Conread position:47-318
               
               
               Cow position:chr8:2579631-2579899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:47-318
               
               
               Cow position:chr8:5484842-5485122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:47-318
               
               
               Cow position:chr8:56581180-56581441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:47-332
               
               
               Cow position:chr8:51443967-51444255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):141, 46

               
               
               Conread position:50-337
               
               
               Cow position:chr8:20384804-20384532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:51-328
               
               
               Cow position:chr8:16030182-16030470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:52-290
               
               
               Cow position:chr8:37148144-37147905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:52-296
               
               
               Cow position:chr8:36465228-36464985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:54-318
               
               
               Cow position:chr8:54195560-54195297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):185, 43

               
               
               Conread position:55-332
               
               
               Cow position:chr8:24363921-24364191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:55-338
               
               
               Cow position:chr8:16053554-16053279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:55-364
               
               
               Cow position:chr8:44664555-44664872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:55-415
               
               
               Cow position:chr8:53964727-53965079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:57-260
               
               
               Cow position:chr8:6184453-6184658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:57-317
               
               
               Cow position:chr8:17669720-17669982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:57-318
               
               
               Cow position:chr8:17103404-17103661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:57-318
               
               
               Cow position:chr8:47860914-47861180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:57-332
               
               
               Cow position:chr8:38572249-38572536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:58-245
               
               
               Cow position:chr8:3655606-3655432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:58-338
               
               
               Cow position:chr8:55926217-55925936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:58-415
               
               
               Cow position:chr8:16938434-16938781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 26

               
               
               Conread position:59-291
               
               
               Cow position:chr8:1327446-1327219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:60-415
               
               
               Cow position:chr8:33432267-33431925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):171, 33

               
               
               Conread position:62-264
               
               
               Cow position:chr8:54210892-54210697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:63-200
               
               
               Cow position:chr8:55719315-55719449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:63-317
               
               
               Cow position:chr8:45830904-45830646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):167, 25

               
               
               Conread position:64-311
               
               
               Cow position:chr8:45687653-45687905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:64-323
               
               
               Cow position:chr8:53587452-53587717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:69-315
               
               
               Cow position:chr8:34410464-34410214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:70-292
               
               
               Cow position:chr8:41264318-41264090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:71-265
               
               
               Cow position:chr8:35497881-35497684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:71-332
               
               
               Cow position:chr8:13634355-13634107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:74-318
               
               
               Cow position:chr8:28321982-28321733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:74-415
               
               
               Cow position:chr8:51579273-51578930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:79-318
               
               
               Cow position:chr8:51661597-51661842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 198

               
               
               Conread position:79-327
               
               
               Cow position:chr8:42889137-42889384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:79-331
               
               
               Cow position:chr8:32495095-32494860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:79-344
               
               
               Cow position:chr8:36858104-36858368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:80-318
               
               
               Cow position:chr8:2882063-2881820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:80-346
               
               
               Cow position:chr8:10305300-10305035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:80-360
               
               
               Cow position:chr8:54231304-54231016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):59, 231

               
               
               Conread position:81-415
               
               
               Cow position:chr8:53642419-53642763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):58, 306

               
               
               Conread position:83-317
               
               
               Cow position:chr8:2830032-2829794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:83-318
               
               
               Cow position:chr8:54052303-54052063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:83-328
               
               
               Cow position:chr8:33994158-33993912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:83-411
               
               
               Cow position:chr8:6417228-6417547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:84-318
               
               
               Cow position:chr8:40032816-40033059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-325
               
               
               Cow position:chr8:34478114-34477865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:84-333
               
               
               Cow position:chr8:4563427-4563685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-415
               
               
               Cow position:chr8:47483925-47484260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:85-282
               
               
               Cow position:chr8:32093874-32093676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:85-318
               
               
               Cow position:chr8:16296756-16297001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:86-307
               
               
               Cow position:chr8:46214076-46214299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:86-413
               
               
               Cow position:chr8:10456459-10456126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:87-245
               
               
               Cow position:chr8:29029283-29029447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 156

               
               
               Conread position:87-278
               
               
               Cow position:chr8:44882939-44882747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:87-324
               
               
               Cow position:chr8:43986222-43986460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:88-318
               
               
               Cow position:chr8:38356857-38357092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:88-332
               
               
               Cow position:chr8:45071361-45071118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:89-296
               
               
               Cow position:chr8:52195911-52195699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:89-318
               
               
               Cow position:chr8:3433869-3433633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:89-330
               
               
               Cow position:chr8:1840899-1841143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:91-318
               
               
               Cow position:chr8:19429861-19430083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 55

               
               
               Conread position:91-318
               
               
               Cow position:chr8:28185668-28185899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:92-289
               
               
               Cow position:chr8:51493041-51493245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:92-318
               
               
               Cow position:chr8:46623553-46623778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:92-332
               
               
               Cow position:chr8:36648467-36648712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-340
               
               
               Cow position:chr8:19223805-19224065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:93-279
               
               
               Cow position:chr8:11217073-11217272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:94-331
               
               
               Cow position:chr8:60774743-60774983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):122, 7

               
               
               Conread position:95-318
               
               
               Cow position:chr8:35436628-35436856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 209

               
               
               Conread position:95-335
               
               
               Cow position:chr8:52308742-52308985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:96-360
               
               
               Cow position:chr8:39040015-39039745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 210

               
               
               Conread position:97-314
               
               
               Cow position:chr8:47665712-47665931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:97-354
               
               
               Cow position:chr8:20080084-20080344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:97-364
               
               
               Cow position:chr8:58385655-58385380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:97-412
               
               
               Cow position:chr8:11590911-11590600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:97-415
               
               
               Cow position:chr8:21224088-21224404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:98-205
               
               
               Cow position:chr8:56507304-56507412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:98-318
               
               
               Cow position:chr8:4161043-4161269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:98-318
               
               
               Cow position:chr8:29416355-29416576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:98-330
               
               
               Cow position:chr8:8901987-8902224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):134, 42

               
               
               Conread position:99-415
               
               
               Cow position:chr8:26600533-26600226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:100-235
               
               
               Cow position:chr8:36741179-36741313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:100-293
               
               
               Cow position:chr8:54303011-54302819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:100-415
               
               
               Cow position:chr8:53451488-53451169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:101-318
               
               
               Cow position:chr8:2814602-2814378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:101-318
               
               
               Cow position:chr8:2953610-2953392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:101-332
               
               
               Cow position:chr8:50898715-50898478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:101-356
               
               
               Cow position:chr8:25249766-25249500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:103-333
               
               
               Cow position:chr8:42575675-42575436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 226

               
               
               Conread position:104-314
               
               
               Cow position:chr8:1596193-1596410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:104-331
               
               
               Cow position:chr8:59478004-59477768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:104-404
               
               
               Cow position:chr8:56824040-56824343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:105-258
               
               
               Cow position:chr8:53929606-53929759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:105-326
               
               
               Cow position:chr8:37090106-37090332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:105-333
               
               
               Cow position:chr8:47461845-47461607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:106-296
               
               
               Cow position:chr8:4591098-4591293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-307
               
               
               Cow position:chr8:31646033-31646238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:106-317
               
               
               Cow position:chr8:57045522-57045740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:106-318
               
               
               Cow position:chr8:26961100-26960877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-329
               
               
               Cow position:chr8:38464984-38464761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:106-330
               
               
               Cow position:chr8:45664747-45664520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:106-336
               
               
               Cow position:chr8:48763531-48763303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):133, 59

               
               
               Conread position:106-349
               
               
               Cow position:chr8:20107809-20108056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 196

               
               
               Conread position:106-360
               
               
               Cow position:chr8:42578103-42578358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:108-295
               
               
               Cow position:chr8:21221222-21221031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:108-318
               
               
               Cow position:chr8:38358402-38358183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:108-334
               
               
               Cow position:chr8:52925744-52925976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:109-318
               
               
               Cow position:chr8:22103210-22103424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:109-415
               
               
               Cow position:chr8:36055429-36055738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:112-415
               
               
               Cow position:chr8:31266219-31266522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 237

               
               
               Conread position:113-318
               
               
               Cow position:chr8:3147574-3147780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:113-318
               
               
               Cow position:chr8:25083244-25083027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:113-318
               
               
               Cow position:chr8:34400913-34400705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 147

               
               
               Conread position:114-317
               
               
               Cow position:chr8:13922394-13922191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:114-318
               
               
               Cow position:chr8:49721108-49720893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 179

               
               
               Conread position:114-354
               
               
               Cow position:chr8:32491523-32491278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 181

               
               
               Conread position:117-332
               
               
               Cow position:chr8:6681951-6682178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-332
               
               
               Cow position:chr8:36059809-36059584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:118-332
               
               
               Cow position:chr8:50957371-50957578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:118-346
               
               
               Cow position:chr8:10434771-10434538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 176

               
               
               Conread position:121-415
               
               
               Cow position:chr8:10786435-10786146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:123-404
               
               
               Cow position:chr8:50949734-50949452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):16, 181

               
               
               Conread position:127-282
               
               
               Cow position:chr8:29917404-29917560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:127-306
               
               
               Cow position:chr8:11594025-11593842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:127-415
               
               
               Cow position:chr8:46743383-46743683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:128-318
               
               
               Cow position:chr8:10176188-10176386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 183

               
               
               Conread position:128-413
               
               
               Cow position:chr8:54572598-54572317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 174

               
               
               Conread position:131-415
               
               
               Cow position:chr8:1114845-1115123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:133-330
               
               
               Cow position:chr8:9962618-9962827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:136-316
               
               
               Cow position:chr8:2621671-2621480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:138-296
               
               
               Cow position:chr8:24905439-24905274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:138-318
               
               
               Cow position:chr8:21268582-21268765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:138-332
               
               
               Cow position:chr8:3887306-3887103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:141-410
               
               
               Cow position:chr8:22154118-22154383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:142-332
               
               
               Cow position:chr8:39321254-39321069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:143-277
               
               
               Cow position:chr8:54269073-54269208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:150-317
               
               
               Cow position:chr8:4559129-4559297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:150-318
               
               
               Cow position:chr8:37376038-37376213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 157

               
               
               Conread position:150-360
               
               
               Cow position:chr8:16093206-16092995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:151-334
               
               
               Cow position:chr8:834299-834109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 156

               
               
               Conread position:152-333
               
               
               Cow position:chr8:10337096-10337285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:155-413
               
               
               Cow position:chr8:24235057-24234803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:155-415
               
               
               Cow position:chr8:42112874-42113137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:159-333
               
               
               Cow position:chr8:33585083-33584901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:166-345
               
               
               Cow position:chr8:20281937-20281757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 157

               
               
               Conread position:170-325
               
               
               Cow position:chr8:22183486-22183322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:171-415
               
               
               Cow position:chr8:32967487-32967239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:173-317
               
               
               Cow position:chr8:19204741-19204884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:173-415
               
               
               Cow position:chr8:741190-741423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:181-372
               
               
               Cow position:chr8:60019790-60019986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 170

               
               
               Conread position:183-319
               
               
               Cow position:chr8:10081824-10081682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:184-328
               
               
               Cow position:chr8:27955541-27955688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 118

               
               
               Conread position:203-414
               
               
               Cow position:chr8:48955793-48955581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 124

               
               
               Conread position:234-358
               
               
               Cow position:chr8:55323522-55323398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr9:53326786-53326615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:1-186
               
               
               Cow position:chr9:1867416-1867594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:1-196
               
               
               Cow position:chr9:33114312-33114501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:1-221
               
               
               Cow position:chr9:27029740-27029523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:1-229
               
               
               Cow position:chr9:32115634-32115422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:1-245
               
               
               Cow position:chr9:214496-214264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:1-257
               
               
               Cow position:chr9:30652744-30652489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:1-274
               
               
               Cow position:chr9:11319669-11319394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:1-296
               
               
               Cow position:chr9:22638067-22638360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:1-304
               
               
               Cow position:chr9:3931926-3932235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:1-309
               
               
               Cow position:chr9:53258089-53257787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:1-318
               
               
               Cow position:chr9:19539066-19539379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 59

               
               
               Conread position:1-318
               
               
               Cow position:chr9:19714045-19714352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:1-325
               
               
               Cow position:chr9:43911893-43912218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:1-325
               
               
               Cow position:chr9:64155885-64155567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:1-326
               
               
               Cow position:chr9:50081075-50080756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-332
               
               
               Cow position:chr9:13994131-13994484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:1-332
               
               
               Cow position:chr9:18252948-18252631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:1-332
               
               
               Cow position:chr9:22696189-22696512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):138, 89

               
               
               Conread position:1-332
               
               
               Cow position:chr9:35375391-35375717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:1-415
               
               
               Cow position:chr9:56252865-56253272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:2-310
               
               
               Cow position:chr9:58669349-58669653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:3-240
               
               
               Cow position:chr9:32847858-32848091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:3-245
               
               
               Cow position:chr9:56860979-56861218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-332
               
               
               Cow position:chr9:25964864-25964528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:3-339
               
               
               Cow position:chr9:34762882-34762550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:3-369
               
               
               Cow position:chr9:52725248-52724887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):136, 87

               
               
               Conread position:3-415
               
               
               Cow position:chr9:3220105-3220490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 83

               
               
               Conread position:4-290
               
               
               Cow position:chr9:6225484-6225198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:4-296
               
               
               Cow position:chr9:5053264-5052979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):245, 22

               
               
               Conread position:4-318
               
               
               Cow position:chr9:59795318-59794998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:4-415
               
               
               Cow position:chr9:19382300-19382695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):246, 33

               
               
               Conread position:6-231
               
               
               Cow position:chr9:1370900-1371123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):114, 86

               
               
               Conread position:6-317
               
               
               Cow position:chr9:1751310-1751616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 82

               
               
               Conread position:6-332
               
               
               Cow position:chr9:22114663-22114337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 39

               
               
               Conread position:6-332
               
               
               Cow position:chr9:36445592-36445917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 164

               
               
               Conread position:7-245
               
               
               Cow position:chr9:11363868-11364097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:7-263
               
               
               Cow position:chr9:30477802-30477557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):148, 72

               
               
               Conread position:7-264
               
               
               Cow position:chr9:15225323-15225062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:7-290
               
               
               Cow position:chr9:25921796-25922077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 86

               
               
               Conread position:7-293
               
               
               Cow position:chr9:34902128-34901858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-308
               
               
               Cow position:chr9:9200751-9200453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:7-308
               
               
               Cow position:chr9:55118060-55118350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-311
               
               
               Cow position:chr9:39428827-39428534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:7-317
               
               
               Cow position:chr9:5509697-5510005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 77

               
               
               Conread position:7-318
               
               
               Cow position:chr9:5141045-5141356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 78

               
               
               Conread position:7-318
               
               
               Cow position:chr9:11201562-11201861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):140, 78

               
               
               Conread position:7-318
               
               
               Cow position:chr9:20416533-20416230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-318
               
               
               Cow position:chr9:38961457-38961155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:7-325
               
               
               Cow position:chr9:22152112-22151799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 41

               
               
               Conread position:7-330
               
               
               Cow position:chr9:6397811-6397492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:7-348
               
               
               Cow position:chr9:48118716-48118392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:7-356
               
               
               Cow position:chr9:52578565-52578213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:7-415
               
               
               Cow position:chr9:24997546-24997133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 80

               
               
               Conread position:8-240
               
               
               Cow position:chr9:3371541-3371775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:8-240
               
               
               Cow position:chr9:15006776-15006555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:8-290
               
               
               Cow position:chr9:3959040-3959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):133, 65

               
               
               Conread position:8-318
               
               
               Cow position:chr9:44467364-44467067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):131, 6

               
               
               Conread position:8-326
               
               
               Cow position:chr9:9956797-9957110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:8-332
               
               
               Cow position:chr9:6934099-6933776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:8-332
               
               
               Cow position:chr9:15805949-15805625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):143, 78

               
               
               Conread position:9-137
               
               
               Cow position:chr9:13761074-13761198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-137
               
               
               Cow position:chr9:64064388-64064261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:9-154
               
               
               Cow position:chr9:45171248-45171105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:9-178
               
               
               Cow position:chr9:52513473-52513315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-179
               
               
               Cow position:chr9:43013697-43013862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:9-186
               
               
               Cow position:chr9:35105815-35105645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:9-187
               
               
               Cow position:chr9:26310481-26310649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:9-201
               
               
               Cow position:chr9:11304100-11303917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):169, 26

               
               
               Conread position:9-209
               
               
               Cow position:chr9:12226003-12225812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:9-209
               
               
               Cow position:chr9:24872811-24873000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:9-209
               
               
               Cow position:chr9:31216060-31216257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:9-210
               
               
               Cow position:chr9:17518514-17518319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-210
               
               
               Cow position:chr9:26477191-26477386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):114, 77

               
               
               Conread position:9-211
               
               
               Cow position:chr9:50202548-50202740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-221
               
               
               Cow position:chr9:11168705-11168911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-221
               
               
               Cow position:chr9:51720922-51720721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-225
               
               
               Cow position:chr9:55321612-55321822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-227
               
               
               Cow position:chr9:16121143-16121355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-235
               
               
               Cow position:chr9:4512463-4512682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:9-235
               
               
               Cow position:chr9:47500237-47500012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-236
               
               
               Cow position:chr9:50543451-50543224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-237
               
               
               Cow position:chr9:10650325-10650104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):170, 89

               
               
               Conread position:9-238
               
               
               Cow position:chr9:9815388-9815615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:9-240
               
               
               Cow position:chr9:18217124-18216904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-240
               
               
               Cow position:chr9:19493491-19493263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:9-240
               
               
               Cow position:chr9:26440837-26440600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:9-242
               
               
               Cow position:chr9:60027172-60027397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:9-245
               
               
               Cow position:chr9:27279284-27279518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-256
               
               
               Cow position:chr9:49416962-49417202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-257
               
               
               Cow position:chr9:28354492-28354739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:9-259
               
               
               Cow position:chr9:1972923-1973165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:9-261
               
               
               Cow position:chr9:35028190-35027948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:9-264
               
               
               Cow position:chr9:6338768-6339030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 72

               
               
               Conread position:9-278
               
               
               Cow position:chr9:33119913-33119640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-279
               
               
               Cow position:chr9:389040-388772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-279
               
               
               Cow position:chr9:1729699-1729433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):176, 82

               
               
               Conread position:9-293
               
               
               Cow position:chr9:54716627-54716365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:9-294
               
               
               Cow position:chr9:5209555-5209843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:9-295
               
               
               Cow position:chr9:6839968-6840270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-296
               
               
               Cow position:chr9:5162075-5161806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:9-297
               
               
               Cow position:chr9:8562797-8563100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:9-301
               
               
               Cow position:chr9:35591986-35592251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-304
               
               
               Cow position:chr9:23431171-23430874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):222, 21

               
               
               Conread position:9-304
               
               
               Cow position:chr9:33597961-33598249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-307
               
               
               Cow position:chr9:32676652-32676957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-307
               
               
               Cow position:chr9:34374949-34374659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):163, 74

               
               
               Conread position:9-307
               
               
               Cow position:chr9:64050586-64050284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:9-308
               
               
               Cow position:chr9:23042753-23043047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-309
               
               
               Cow position:chr9:10010785-10011074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-310
               
               
               Cow position:chr9:9403198-9402911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-315
               
               
               Cow position:chr9:21030283-21030595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 72

               
               
               Conread position:9-316
               
               
               Cow position:chr9:823935-824235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):175, 77

               
               
               Conread position:9-316
               
               
               Cow position:chr9:17928732-17929053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:9-316
               
               
               Cow position:chr9:19903057-19903332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-316
               
               
               Cow position:chr9:36490924-36490615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:9-316
               
               
               Cow position:chr9:55287914-55287611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):224, 21

               
               
               Conread position:9-317
               
               
               Cow position:chr9:5757013-5756722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:9-317
               
               
               Cow position:chr9:28726749-28726445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:9-317
               
               
               Cow position:chr9:54611261-54610950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:9-317
               
               
               Cow position:chr9:54681484-54681782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-318
               
               
               Cow position:chr9:647752-648057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:9-318
               
               
               Cow position:chr9:5245828-5246130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:9-318
               
               
               Cow position:chr9:7409738-7410064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-318
               
               
               Cow position:chr9:9461682-9461373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):131, 53

               
               
               Conread position:9-318
               
               
               Cow position:chr9:13670608-13670919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:9-318
               
               
               Cow position:chr9:15215712-15215399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr9:17310587-17310280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chr9:20989483-20989172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:9-318
               
               
               Cow position:chr9:22443652-22443330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr9:24726690-24726396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):172, 44

               
               
               Conread position:9-318
               
               
               Cow position:chr9:26086035-26086349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 27

               
               
               Conread position:9-318
               
               
               Cow position:chr9:28947837-28948134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:9-318
               
               
               Cow position:chr9:29185162-29184852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chr9:34468603-34468311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:9-318
               
               
               Cow position:chr9:35849879-35850180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 78

               
               
               Conread position:9-318
               
               
               Cow position:chr9:35904770-35904469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chr9:42497796-42498111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 64

               
               
               Conread position:9-318
               
               
               Cow position:chr9:43037457-43037765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):153, 86

               
               
               Conread position:9-318
               
               
               Cow position:chr9:44709804-44710103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:9-318
               
               
               Cow position:chr9:45285560-45285249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):96, 142

               
               
               Conread position:9-318
               
               
               Cow position:chr9:47955268-47954943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:9-321
               
               
               Cow position:chr9:41282990-41283313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-328
               
               
               Cow position:chr9:8534715-8534390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 79

               
               
               Conread position:9-328
               
               
               Cow position:chr9:35167151-35167460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-329
               
               
               Cow position:chr9:3070437-3070130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-330
               
               
               Cow position:chr9:13169688-13169377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:9-331
               
               
               Cow position:chr9:8998324-8998650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:9-331
               
               
               Cow position:chr9:38792991-38793314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-331
               
               
               Cow position:chr9:50977278-50976951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:9-331
               
               
               Cow position:chr9:56773051-56773374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:9-331
               
               
               Cow position:chr9:64091655-64091984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:9-332
               
               
               Cow position:chr9:5327233-5327547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-332
               
               
               Cow position:chr9:8723769-8724096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 29

               
               
               Conread position:9-332
               
               
               Cow position:chr9:43870950-43871268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-332
               
               
               Cow position:chr9:45756338-45756653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:9-332
               
               
               Cow position:chr9:49983114-49982801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:9-332
               
               
               Cow position:chr9:52407139-52407466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-332
               
               
               Cow position:chr9:60110225-60110530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):176, 34

               
               
               Conread position:9-333
               
               
               Cow position:chr9:5763656-5763333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-333
               
               
               Cow position:chr9:9199807-9199488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:9-335
               
               
               Cow position:chr9:5433607-5433930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 94

               
               
               Conread position:9-337
               
               
               Cow position:chr9:27310780-27310452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-350
               
               
               Cow position:chr9:26279194-26278863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-354
               
               
               Cow position:chr9:9416420-9416091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 21

               
               
               Conread position:9-362
               
               
               Cow position:chr9:47875985-47875622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:9-381
               
               
               Cow position:chr9:33940580-33940952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-412
               
               
               Cow position:chr9:6089063-6089470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-413
               
               
               Cow position:chr9:9443626-9443223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-414
               
               
               Cow position:chr9:22318324-22318708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:9-414
               
               
               Cow position:chr9:22433953-22433573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:9-414
               
               
               Cow position:chr9:29006532-29006937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:9-415
               
               
               Cow position:chr9:1520763-1520358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):5, 78

               
               
               Conread position:9-415
               
               
               Cow position:chr9:5594478-5594871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr9:9723901-9723512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-415
               
               
               Cow position:chr9:17411218-17410818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:9-415
               
               
               Cow position:chr9:30138094-30138515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:9-415
               
               
               Cow position:chr9:30402450-30402046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-415
               
               
               Cow position:chr9:34958081-34957681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr9:41789259-41789658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-415
               
               
               Cow position:chr9:42446008-42445602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-415
               
               
               Cow position:chr9:47906305-47905909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 7

               
               
               Conread position:9-724
               
               
               Cow position:chr9:38941457-38940747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:10-240
               
               
               Cow position:chr9:53139156-53138931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 71

               
               
               Conread position:10-263
               
               
               Cow position:chr9:53762670-53762928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:10-264
               
               
               Cow position:chr9:45141624-45141377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-289
               
               
               Cow position:chr9:31814410-31814125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:10-309
               
               
               Cow position:chr9:64559906-64559613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:10-318
               
               
               Cow position:chr9:9552066-9552369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:10-326
               
               
               Cow position:chr9:55084326-55084007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:10-328
               
               
               Cow position:chr9:4646349-4646037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:10-331
               
               
               Cow position:chr9:1952294-1951975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:10-415
               
               
               Cow position:chr9:3387665-3388062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 89

               
               
               Conread position:10-415
               
               
               Cow position:chr9:54528490-54528886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:288
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:11-189
               
               
               Cow position:chr9:32669970-32669799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:11-209
               
               
               Cow position:chr9:31557753-31557560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:11-222
               
               
               Cow position:chr9:8901250-8901042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 81

               
               
               Conread position:11-245
               
               
               Cow position:chr9:32817165-32816929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:11-256
               
               
               Cow position:chr9:17799603-17799850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-262
               
               
               Cow position:chr9:34106694-34106940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:11-277
               
               
               Cow position:chr9:52130987-52131259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:11-277
               
               
               Cow position:chr9:56011476-56011738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):170, 80

               
               
               Conread position:11-291
               
               
               Cow position:chr9:44832077-44831800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):203, 14

               
               
               Conread position:11-293
               
               
               Cow position:chr9:58979378-58979658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-304
               
               
               Cow position:chr9:34286776-34287062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-317
               
               
               Cow position:chr9:44915120-44914815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 63

               
               
               Conread position:11-318
               
               
               Cow position:chr9:5227195-5226883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-318
               
               
               Cow position:chr9:9823529-9823237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:11-318
               
               
               Cow position:chr9:28747543-28747240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr9:29808431-29808747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:11-318
               
               
               Cow position:chr9:35533976-35533670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:11-318
               
               
               Cow position:chr9:41679724-41680016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:11-318
               
               
               Cow position:chr9:54437241-54437534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:11-318
               
               
               Cow position:chr9:54924595-54924908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-318
               
               
               Cow position:chr9:59386792-59386499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):188, 74

               
               
               Conread position:11-326
               
               
               Cow position:chr9:4861361-4861679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-328
               
               
               Cow position:chr9:31079105-31078792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-329
               
               
               Cow position:chr9:17740965-17740650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:11-330
               
               
               Cow position:chr9:8338004-8338324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-330
               
               
               Cow position:chr9:21888147-21888463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:11-330
               
               
               Cow position:chr9:52505329-52505009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 41

               
               
               Conread position:11-331
               
               
               Cow position:chr9:55256575-55256255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:11-347
               
               
               Cow position:chr9:17872133-17871797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:11-356
               
               
               Cow position:chr9:20091023-20091358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:11-412
               
               
               Cow position:chr9:1949894-1950290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 81

               
               
               Conread position:11-414
               
               
               Cow position:chr9:28983160-28983556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:12-129
               
               
               Cow position:chr9:24652382-24652499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-290
               
               
               Cow position:chr9:55889793-55890063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):166, 16

               
               
               Conread position:13-318
               
               
               Cow position:chr9:5319599-5319911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:13-415
               
               
               Cow position:chr9:16300590-16300197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 74

               
               
               Conread position:14-218
               
               
               Cow position:chr9:41853412-41853620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:14-259
               
               
               Cow position:chr9:61302980-61303224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:14-287
               
               
               Cow position:chr9:50139265-50139532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:14-305
               
               
               Cow position:chr9:5500837-5501120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:14-317
               
               
               Cow position:chr9:32307251-32306959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:14-317
               
               
               Cow position:chr9:51566515-51566207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):125, 78

               
               
               Conread position:14-326
               
               
               Cow position:chr9:22360990-22361304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 97

               
               
               Conread position:14-326
               
               
               Cow position:chr9:39152700-39152397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:14-328
               
               
               Cow position:chr9:61738902-61739208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):178, 90

               
               
               Conread position:14-332
               
               
               Cow position:chr9:26403765-26404085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 78

               
               
               Conread position:14-334
               
               
               Cow position:chr9:25958397-25958711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):217, 61

               
               
               Conread position:14-414
               
               
               Cow position:chr9:31346930-31347323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:15-240
               
               
               Cow position:chr9:42062080-42062312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:16-307
               
               
               Cow position:chr9:18110884-18110595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:16-310
               
               
               Cow position:chr9:32624989-32625270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:16-311
               
               
               Cow position:chr9:20961298-20961013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):170, 68

               
               
               Conread position:16-317
               
               
               Cow position:chr9:15951174-15950874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):226, 19

               
               
               Conread position:16-335
               
               
               Cow position:chr9:20322118-20321814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:16-415
               
               
               Cow position:chr9:4858517-4858909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:19-226
               
               
               Cow position:chr9:31638659-31638455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:19-318
               
               
               Cow position:chr9:12183732-12184028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:19-318
               
               
               Cow position:chr9:31588118-31587815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:19-332
               
               
               Cow position:chr9:8869158-8868840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:19-337
               
               
               Cow position:chr9:41317988-41317668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 55

               
               
               Conread position:20-235
               
               
               Cow position:chr9:50703125-50702921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):159, 61

               
               
               Conread position:20-279
               
               
               Cow position:chr9:61544640-61544892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:20-318
               
               
               Cow position:chr9:5029495-5029797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-350
               
               
               Cow position:chr9:49764643-49764970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:20-412
               
               
               Cow position:chr9:62656790-62657160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:21-311
               
               
               Cow position:chr9:8288602-8288893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:21-315
               
               
               Cow position:chr9:20681419-20681128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):118, 71

               
               
               Conread position:21-317
               
               
               Cow position:chr9:50296047-50295743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:21-318
               
               
               Cow position:chr9:7634258-7634550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-326
               
               
               Cow position:chr9:33218967-33218662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:21-356
               
               
               Cow position:chr9:58972512-58972159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):165, 89

               
               
               Conread position:21-415
               
               
               Cow position:chr9:20847916-20848308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:22-240
               
               
               Cow position:chr9:8919979-8920198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:22-262
               
               
               Cow position:chr9:33038473-33038232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:22-296
               
               
               Cow position:chr9:29108524-29108797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:22-330
               
               
               Cow position:chr9:5836142-5836458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:22-415
               
               
               Cow position:chr9:46316795-46316417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:23-227
               
               
               Cow position:chr9:56065546-56065735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):116, 9

               
               
               Conread position:23-318
               
               
               Cow position:chr9:50606959-50606671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 54

               
               
               Conread position:23-415
               
               
               Cow position:chr9:34697313-34696925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:23-415
               
               
               Cow position:chr9:61997610-61997226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:24-318
               
               
               Cow position:chr9:11146673-11146373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:24-415
               
               
               Cow position:chr9:18163170-18162781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:25-256
               
               
               Cow position:chr9:40543334-40543106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:25-316
               
               
               Cow position:chr9:41513615-41513899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:25-318
               
               
               Cow position:chr9:36410367-36410070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:26-199
               
               
               Cow position:chr9:33697020-33697185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:26-203
               
               
               Cow position:chr9:3774153-3774327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:26-296
               
               
               Cow position:chr9:36827127-36827385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:26-308
               
               
               Cow position:chr9:25972495-25972771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:26-317
               
               
               Cow position:chr9:31626141-31626430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):202, 27

               
               
               Conread position:26-317
               
               
               Cow position:chr9:38343879-38344176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:26-318
               
               
               Cow position:chr9:63745804-63746086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:26-330
               
               
               Cow position:chr9:21460162-21459863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):216, 71

               
               
               Conread position:26-332
               
               
               Cow position:chr9:9516774-9516475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:26-332
               
               
               Cow position:chr9:32371765-32371464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:27-264
               
               
               Cow position:chr9:32710922-32711160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:27-332
               
               
               Cow position:chr9:31640332-31640022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:28-290
               
               
               Cow position:chr9:2114013-2113750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):135, 60

               
               
               Conread position:28-318
               
               
               Cow position:chr9:3725070-3724780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:29-221
               
               
               Cow position:chr9:31270774-31270960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:29-308
               
               
               Cow position:chr9:47869004-47869278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):195, 50

               
               
               Conread position:29-318
               
               
               Cow position:chr9:57951325-57951047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:29-332
               
               
               Cow position:chr9:33092947-33093240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:30-230
               
               
               Cow position:chr9:43443797-43443981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):159, 58

               
               
               Conread position:30-249
               
               
               Cow position:chr9:25804828-25805043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:30-277
               
               
               Cow position:chr9:49709841-49710085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):158, 69

               
               
               Conread position:30-279
               
               
               Cow position:chr9:35360108-35359859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):159, 59

               
               
               Conread position:30-296
               
               
               Cow position:chr9:49983693-49983432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:30-317
               
               
               Cow position:chr9:5531938-5532233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:30-415
               
               
               Cow position:chr9:7363020-7363406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:30-415
               
               
               Cow position:chr9:18215914-18215542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:32-326
               
               
               Cow position:chr9:34310022-34310324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:33-227
               
               
               Cow position:chr9:8524841-8525021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:33-318
               
               
               Cow position:chr9:6952103-6952372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):138, 10

               
               
               Conread position:34-318
               
               
               Cow position:chr9:52787542-52787254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 41

               
               
               Conread position:34-332
               
               
               Cow position:chr9:11299692-11299401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:34-415
               
               
               Cow position:chr9:37016890-37017255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:35-317
               
               
               Cow position:chr9:59924541-59924822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:35-326
               
               
               Cow position:chr9:58134019-58133734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):138, 50

               
               
               Conread position:37-363
               
               
               Cow position:chr9:20579600-20579299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 35

               
               
               Conread position:38-296
               
               
               Cow position:chr9:34919256-34919006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 53

               
               
               Conread position:38-311
               
               
               Cow position:chr9:40105471-40105751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-315
               
               
               Cow position:chr9:10092390-10092115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:38-315
               
               
               Cow position:chr9:30749585-30749306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:38-318
               
               
               Cow position:chr9:10127669-10127388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:38-318
               
               
               Cow position:chr9:12355857-12356138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):151, 41

               
               
               Conread position:39-279
               
               
               Cow position:chr9:29091797-29092047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:39-290
               
               
               Cow position:chr9:24399680-24399431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:40-278
               
               
               Cow position:chr9:62134622-62134378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:40-315
               
               
               Cow position:chr9:29330646-29330380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:40-318
               
               
               Cow position:chr9:20901116-20900849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):91, 46

               
               
               Conread position:41-291
               
               
               Cow position:chr9:33681681-33681939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:42-317
               
               
               Cow position:chr9:1712468-1712207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:43-318
               
               
               Cow position:chr9:54998020-54997741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:43-326
               
               
               Cow position:chr9:29035027-29034746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 57

               
               
               Conread position:43-328
               
               
               Cow position:chr9:52484912-52484625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 54

               
               
               Conread position:43-358
               
               
               Cow position:chr9:42173195-42172878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:44-415
               
               
               Cow position:chr9:26390779-26391135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:45-330
               
               
               Cow position:chr9:20738707-20738996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:46-279
               
               
               Cow position:chr9:40603957-40604193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:46-334
               
               
               Cow position:chr9:55075120-55074839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:47-210
               
               
               Cow position:chr9:4324144-4323988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:47-248
               
               
               Cow position:chr9:1879393-1879584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:47-260
               
               
               Cow position:chr9:6118136-6117923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:47-324
               
               
               Cow position:chr9:53602440-53602702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):142, 41

               
               
               Conread position:47-415
               
               
               Cow position:chr9:23027817-23028171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 41

               
               
               Conread position:49-334
               
               
               Cow position:chr9:34000605-34000315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:49-360
               
               
               Cow position:chr9:37000046-36999737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 38

               
               
               Conread position:52-238
               
               
               Cow position:chr9:14358181-14358360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:52-272
               
               
               Cow position:chr9:50667439-50667659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:52-316
               
               
               Cow position:chr9:18002936-18002669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 41

               
               
               Conread position:52-340
               
               
               Cow position:chr9:10118653-10118360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:55-311
               
               
               Cow position:chr9:16745693-16745952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-413
               
               
               Cow position:chr9:5622017-5621662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:56-205
               
               
               Cow position:chr9:18029381-18029229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:56-237
               
               
               Cow position:chr9:49279486-49279671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:56-240
               
               
               Cow position:chr9:58734390-58734570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:56-415
               
               
               Cow position:chr9:35202899-35203272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:57-233
               
               
               Cow position:chr9:30123942-30124113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:57-245
               
               
               Cow position:chr9:11198320-11198138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:57-315
               
               
               Cow position:chr9:21840095-21840354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):176, 50

               
               
               Conread position:57-318
               
               
               Cow position:chr9:6879793-6880052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:57-318
               
               
               Cow position:chr9:59013319-59013053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-358
               
               
               Cow position:chr9:35306095-35305799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:59-432
               
               
               Cow position:chr9:42998447-42998074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:61-310
               
               
               Cow position:chr9:32732664-32732411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:61-318
               
               
               Cow position:chr9:58439755-58439500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:62-318
               
               
               Cow position:chr9:64517071-64516815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:64-327
               
               
               Cow position:chr9:60037680-60037946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:64-354
               
               
               Cow position:chr9:49403789-49404072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):173, 37

               
               
               Conread position:68-311
               
               
               Cow position:chr9:36066939-36067180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:73-415
               
               
               Cow position:chr9:30189128-30189483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:79-334
               
               
               Cow position:chr9:16218604-16218347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:80-335
               
               
               Cow position:chr9:36623403-36623153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:80-338
               
               
               Cow position:chr9:44408079-44408334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:83-258
               
               
               Cow position:chr9:32829965-32829794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:83-330
               
               
               Cow position:chr9:29825079-29825323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:83-332
               
               
               Cow position:chr9:4928670-4928925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:83-335
               
               
               Cow position:chr9:37528496-37528755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:83-368
               
               
               Cow position:chr9:41781942-41782229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:84-312
               
               
               Cow position:chr9:51620482-51620711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:84-318
               
               
               Cow position:chr9:18073069-18072836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:84-332
               
               
               Cow position:chr9:23388633-23388380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:84-357
               
               
               Cow position:chr9:10144433-10144151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:85-332
               
               
               Cow position:chr9:20811018-20810768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:87-229
               
               
               Cow position:chr9:62151151-62151290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:87-326
               
               
               Cow position:chr9:34666465-34666698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:87-332
               
               
               Cow position:chr9:28773166-28773413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:87-346
               
               
               Cow position:chr9:37069526-37069259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:88-264
               
               
               Cow position:chr9:31292735-31292916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-324
               
               
               Cow position:chr9:52001050-52001295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):6, 203

               
               
               Conread position:88-338
               
               
               Cow position:chr9:18093620-18093360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:89-314
               
               
               Cow position:chr9:19637588-19637361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:89-338
               
               
               Cow position:chr9:8600377-8600637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:89-415
               
               
               Cow position:chr9:8612329-8612669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 290

               
               
               Conread position:90-309
               
               
               Cow position:chr9:61847101-61846877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:90-328
               
               
               Cow position:chr9:27052289-27052041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:92-306
               
               
               Cow position:chr9:16182437-16182221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:92-316
               
               
               Cow position:chr9:27077192-27076971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:92-318
               
               
               Cow position:chr9:59172332-59172096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:92-326
               
               
               Cow position:chr9:1984474-1984232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:92-326
               
               
               Cow position:chr9:29840936-29841177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:92-356
               
               
               Cow position:chr9:51311719-51311990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 214

               
               
               Conread position:93-244
               
               
               Cow position:chr9:1909330-1909181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:93-304
               
               
               Cow position:chr9:41995762-41995982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:93-330
               
               
               Cow position:chr9:40542171-40542407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:94-318
               
               
               Cow position:chr9:30664729-30664497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:96-318
               
               
               Cow position:chr9:3924680-3924898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:96-331
               
               
               Cow position:chr9:32812399-32812641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 208

               
               
               Conread position:96-352
               
               
               Cow position:chr9:24850299-24850559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:96-415
               
               
               Cow position:chr9:8937199-8937519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:97-303
               
               
               Cow position:chr9:8546376-8546585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:97-331
               
               
               Cow position:chr9:8997607-8997851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:99-316
               
               
               Cow position:chr9:58204722-58204943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:100-415
               
               
               Cow position:chr9:42585575-42585255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 172

               
               
               Conread position:101-331
               
               
               Cow position:chr9:48343662-48343896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:101-333
               
               
               Cow position:chr9:62361175-62360932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:101-381
               
               
               Cow position:chr9:5399787-5400060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:102-318
               
               
               Cow position:chr9:8547875-8548091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:104-247
               
               
               Cow position:chr9:29578308-29578451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:104-332
               
               
               Cow position:chr9:9490855-9491085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:105-318
               
               
               Cow position:chr9:17634770-17634549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:105-410
               
               
               Cow position:chr9:58673803-58674123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:106-231
               
               
               Cow position:chr9:51011481-51011353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:106-317
               
               
               Cow position:chr9:2910188-2910399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:106-330
               
               
               Cow position:chr9:20319015-20318782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-333
               
               
               Cow position:chr9:22228018-22227788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-333
               
               
               Cow position:chr9:53608330-53608097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:106-419
               
               
               Cow position:chr9:36602356-36602043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:107-296
               
               
               Cow position:chr9:23541342-23541158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:107-317
               
               
               Cow position:chr9:5393114-5393331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:108-318
               
               
               Cow position:chr9:6192396-6192177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 61

               
               
               Conread position:108-318
               
               
               Cow position:chr9:15983016-15982796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:108-318
               
               
               Cow position:chr9:26577788-26577578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:108-356
               
               
               Cow position:chr9:55364957-55365209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:109-296
               
               
               Cow position:chr9:38875509-38875314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-335
               
               
               Cow position:chr9:62357458-62357232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:113-311
               
               
               Cow position:chr9:4128712-4128508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-330
               
               
               Cow position:chr9:57897047-57896831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:113-414
               
               
               Cow position:chr9:31077609-31077308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:114-332
               
               
               Cow position:chr9:14974858-14974630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:114-354
               
               
               Cow position:chr9:30020041-30020295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:117-324
               
               
               Cow position:chr9:3807665-3807449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:119-318
               
               
               Cow position:chr9:17785384-17785179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:123-415
               
               
               Cow position:chr9:13205484-13205199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:123-415
               
               
               Cow position:chr9:20406717-20407006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:126-326
               
               
               Cow position:chr9:2398541-2398342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:126-338
               
               
               Cow position:chr9:41958715-41958493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:128-326
               
               
               Cow position:chr9:24887286-24887487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:134-318
               
               
               Cow position:chr9:31662557-31662751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 172

               
               
               Conread position:138-318
               
               
               Cow position:chr9:3410867-3411050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 165

               
               
               Conread position:138-332
               
               
               Cow position:chr9:22616722-22616915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:138-415
               
               
               Cow position:chr9:35100965-35101244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 228

               
               
               Conread position:141-334
               
               
               Cow position:chr9:55651130-55651318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 26

               
               
               Conread position:142-342
               
               
               Cow position:chr9:26310656-26310864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:143-318
               
               
               Cow position:chr9:33823201-33823373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:146-318
               
               
               Cow position:chr9:47926018-47926188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:148-332
               
               
               Cow position:chr9:18140189-18139999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:152-317
               
               
               Cow position:chr9:34689490-34689331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:152-318
               
               
               Cow position:chr9:18008752-18008585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:156-344
               
               
               Cow position:chr9:51928813-51929012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:158-338
               
               
               Cow position:chr9:24904593-24904779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:167-349
               
               
               Cow position:chr9:40060204-40060014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:172-368
               
               
               Cow position:chr9:15054009-15054210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:175-330
               
               
               Cow position:chr9:54666037-54666199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:182-333
               
               
               Cow position:chr9:48017681-48017526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:183-333
               
               
               Cow position:chr9:36354135-36353985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:186-364
               
               
               Cow position:chr9:35745468-35745650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:187-317
               
               
               Cow position:chr9:36843982-36844112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:188-340
               
               
               Cow position:chr9:49689084-49689241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:197-345
               
               
               Cow position:chr9:21383694-21383548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-233
               
               
               Cow position:chrX:36393251-36393484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:1-272
               
               
               Cow position:chrX:6407634-6407368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:1-287
               
               
               Cow position:chrX:48248914-48248629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:1-293
               
               
               Cow position:chrX:1175892-1176184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:1-303
               
               
               Cow position:chrX:20752340-20752048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:1-315
               
               
               Cow position:chrX:6488666-6488363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:1-315
               
               
               Cow position:chrX:16541566-16541899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:1-318
               
               
               Cow position:chrX:20887550-20887870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:1-318
               
               
               Cow position:chrX:23563700-23564023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:1-318
               
               
               Cow position:chrX:34565375-34565071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 97

               
               
               Conread position:1-318
               
               
               Cow position:chrX:37843808-37843494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:1-324
               
               
               Cow position:chrX:3654699-3654372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:1-326
               
               
               Cow position:chrX:10411895-10412220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:1-332
               
               
               Cow position:chrX:11844150-11844481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:1-332
               
               
               Cow position:chrX:32020043-32020362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:1-346
               
               
               Cow position:chrX:4768823-4768496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:1-352
               
               
               Cow position:chrX:38935370-38935021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:1-413
               
               
               Cow position:chrX:26625581-26625998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:1-415
               
               
               Cow position:chrX:21064374-21063971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):20, 87

               
               
               Conread position:2-332
               
               
               Cow position:chrX:25419064-25419401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:3-241
               
               
               Cow position:chrX:16514179-16514409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-255
               
               
               Cow position:chrX:41068812-41068564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):136, 92

               
               
               Conread position:3-272
               
               
               Cow position:chrX:27228213-27227945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):136, 75

               
               
               Conread position:3-318
               
               
               Cow position:chrX:18456489-18456166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:3-330
               
               
               Cow position:chrX:47744175-47743837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:3-332
               
               
               Cow position:chrX:32743621-32743298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-338
               
               
               Cow position:chrX:6563607-6563266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:3-415
               
               
               Cow position:chrX:11675153-11674743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:5-334
               
               
               Cow position:chrX:35413695-35413390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:7-192
               
               
               Cow position:chrX:29549466-29549644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:7-227
               
               
               Cow position:chrX:20584411-20584192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:7-228
               
               
               Cow position:chrX:40685245-40685463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-232
               
               
               Cow position:chrX:18142370-18142592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):154, 70

               
               
               Conread position:7-264
               
               
               Cow position:chrX:22466039-22465783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):9, 165

               
               
               Conread position:7-266
               
               
               Cow position:chrX:22921404-22921139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:7-287
               
               
               Cow position:chrX:38853280-38853001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):224, 19

               
               
               Conread position:7-293
               
               
               Cow position:chrX:29121130-29120855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:7-293
               
               
               Cow position:chrX:31340794-31340503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:7-296
               
               
               Cow position:chrX:14973663-14973939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-311
               
               
               Cow position:chrX:9041161-9041448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):205, 67

               
               
               Conread position:7-311
               
               
               Cow position:chrX:10302425-10302120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:7-318
               
               
               Cow position:chrX:31250471-31250166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):127, 86

               
               
               Conread position:7-318
               
               
               Cow position:chrX:34238802-34238495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):180, 92

               
               
               Conread position:7-325
               
               
               Cow position:chrX:45429939-45430250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):202, 86

               
               
               Conread position:7-326
               
               
               Cow position:chrX:25570910-25571230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):136, 86

               
               
               Conread position:7-326
               
               
               Cow position:chrX:28111593-28111272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-330
               
               
               Cow position:chrX:25713879-25713563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-332
               
               
               Cow position:chrX:151984-151661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:7-332
               
               
               Cow position:chrX:13868785-13868454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:7-332
               
               
               Cow position:chrX:17542043-17541724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):210, 72

               
               
               Conread position:7-333
               
               
               Cow position:chrX:5118415-5118726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:7-336
               
               
               Cow position:chrX:21642399-21642722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:7-352
               
               
               Cow position:chrX:2764945-2764607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):158, 18

               
               
               Conread position:7-356
               
               
               Cow position:chrX:7425549-7425200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-373
               
               
               Cow position:chrX:38642332-38641978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:7-415
               
               
               Cow position:chrX:917285-917685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 59

               
               
               Conread position:7-415
               
               
               Cow position:chrX:1615960-1616366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:7-415
               
               
               Cow position:chrX:23414285-23414697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):232, 72

               
               
               Conread position:7-415
               
               
               Cow position:chrX:39071777-39071368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:8-230
               
               
               Cow position:chrX:27449916-27450133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:8-235
               
               
               Cow position:chrX:27685330-27685108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:8-317
               
               
               Cow position:chrX:28013360-28013665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:8-318
               
               
               Cow position:chrX:14900651-14900947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 43

               
               
               Conread position:8-329
               
               
               Cow position:chrX:45502228-45501911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:8-332
               
               
               Cow position:chrX:15147115-15147426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:8-415
               
               
               Cow position:chrX:37489801-37489403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:9-135
               
               
               Cow position:chrX:42894007-42893879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:9-175
               
               
               Cow position:chrX:23562713-23562556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-176
               
               
               Cow position:chrX:39220160-39220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-180
               
               
               Cow position:chrX:41270905-41271082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:9-183
               
               
               Cow position:chrX:36514811-36514981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:9-184
               
               
               Cow position:chrX:40680695-40680523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:9-186
               
               
               Cow position:chrX:42855539-42855365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:9-188
               
               
               Cow position:chrX:37129350-37129177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:9-190
               
               
               Cow position:chrX:20168639-20168464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-195
               
               
               Cow position:chrX:10516334-10516157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-197
               
               
               Cow position:chrX:21327994-21327802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:9-203
               
               
               Cow position:chrX:4991932-4992123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:9-204
               
               
               Cow position:chrX:47657467-47657276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):125, 79

               
               
               Conread position:9-210
               
               
               Cow position:chrX:26881484-26881682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-220
               
               
               Cow position:chrX:27945973-27946183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:9-223
               
               
               Cow position:chrX:19003374-19003173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-225
               
               
               Cow position:chrX:38728815-38728608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:9-227
               
               
               Cow position:chrX:9365595-9365806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-231
               
               
               Cow position:chrX:41027240-41027022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-233
               
               
               Cow position:chrX:7710458-7710680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:9-235
               
               
               Cow position:chrX:21566488-21566263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-240
               
               
               Cow position:chrX:29723821-29723597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-241
               
               
               Cow position:chrX:11084982-11085202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 74

               
               
               Conread position:9-242
               
               
               Cow position:chrX:39415289-39415516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-245
               
               
               Cow position:chrX:29680180-29680409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-260
               
               
               Cow position:chrX:6260068-6260323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:9-263
               
               
               Cow position:chrX:37955928-37955666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 140

               
               
               Conread position:9-264
               
               
               Cow position:chrX:22387169-22387420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:9-264
               
               
               Cow position:chrX:35885646-35885902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:9-264
               
               
               Cow position:chrX:36061241-36060979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:9-264
               
               
               Cow position:chrX:47186243-47186493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-265
               
               
               Cow position:chrX:46433572-46433309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-279
               
               
               Cow position:chrX:31729523-31729269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:9-279
               
               
               Cow position:chrX:42235443-42235721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-282
               
               
               Cow position:chrX:31312110-31311835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):221, 70

               
               
               Conread position:9-282
               
               
               Cow position:chrX:43730143-43730405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):222, 47

               
               
               Conread position:9-282
               
               
               Cow position:chrX:44656876-44657155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 59

               
               
               Conread position:9-289
               
               
               Cow position:chrX:33000986-33000706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-289
               
               
               Cow position:chrX:37781028-37781315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 82

               
               
               Conread position:9-289
               
               
               Cow position:chrX:40809774-40809489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-293
               
               
               Cow position:chrX:7277992-7277718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):197, 78

               
               
               Conread position:9-293
               
               
               Cow position:chrX:29875996-29876268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):209, 45

               
               
               Conread position:9-293
               
               
               Cow position:chrX:41238274-41238567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-294
               
               
               Cow position:chrX:12405300-12405579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-296
               
               
               Cow position:chrX:488585-488285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:9-296
               
               
               Cow position:chrX:32420293-32420014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 46

               
               
               Conread position:9-296
               
               
               Cow position:chrX:46587903-46587613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 93

               
               
               Conread position:9-303
               
               
               Cow position:chrX:29542136-29542430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:9-304
               
               
               Cow position:chrX:27175079-27174782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:9-306
               
               
               Cow position:chrX:34411927-34411625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-307
               
               
               Cow position:chrX:30543203-30543501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-307
               
               
               Cow position:chrX:34554804-34554511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-309
               
               
               Cow position:chrX:37910526-37910235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:9-310
               
               
               Cow position:chrX:11633763-11633460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-311
               
               
               Cow position:chrX:6278417-6278725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:9-314
               
               
               Cow position:chrX:1503408-1503117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):237, 34

               
               
               Conread position:9-314
               
               
               Cow position:chrX:10959314-10959625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):109, 79

               
               
               Conread position:9-314
               
               
               Cow position:chrX:11717702-11718002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-314
               
               
               Cow position:chrX:12979753-12980053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):224, 70

               
               
               Conread position:9-314
               
               
               Cow position:chrX:46072736-46073044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-315
               
               
               Cow position:chrX:6265518-6265809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-317
               
               
               Cow position:chrX:755045-754733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:9-317
               
               
               Cow position:chrX:13265546-13265845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:9-317
               
               
               Cow position:chrX:22822127-22821822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:9-317
               
               
               Cow position:chrX:34503001-34502695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-317
               
               
               Cow position:chrX:42247101-42247409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-318
               
               
               Cow position:chrX:3130653-3130355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):208, 75

               
               
               Conread position:9-318
               
               
               Cow position:chrX:4268983-4269294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:9-318
               
               
               Cow position:chrX:4632776-4633077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:9-318
               
               
               Cow position:chrX:4865314-4865025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):153, 42

               
               
               Conread position:9-318
               
               
               Cow position:chrX:6544335-6544030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):223, 20

               
               
               Conread position:9-318
               
               
               Cow position:chrX:7695830-7695535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):144, 20

               
               
               Conread position:9-318
               
               
               Cow position:chrX:7722069-7721758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chrX:15007068-15007377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-318
               
               
               Cow position:chrX:16762852-16762545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-318
               
               
               Cow position:chrX:17726056-17725752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chrX:17795062-17794759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):233, 75

               
               
               Conread position:9-318
               
               
               Cow position:chrX:17888342-17888632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-318
               
               
               Cow position:chrX:18694850-18695147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-318
               
               
               Cow position:chrX:19690296-19689992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:9-318
               
               
               Cow position:chrX:27705667-27705367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:9-318
               
               
               Cow position:chrX:30962796-30963098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-318
               
               
               Cow position:chrX:31294491-31294768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:9-318
               
               
               Cow position:chrX:31489601-31489286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:9-318
               
               
               Cow position:chrX:31948854-31949157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:9-318
               
               
               Cow position:chrX:34441373-34441676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-318
               
               
               Cow position:chrX:35288734-35288434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:9-318
               
               
               Cow position:chrX:37232488-37232183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 71

               
               
               Conread position:9-318
               
               
               Cow position:chrX:42469860-42470163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:9-318
               
               
               Cow position:chrX:47481877-47481573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:9-324
               
               
               Cow position:chrX:40480791-40481103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:9-325
               
               
               Cow position:chrX:17231816-17231501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-326
               
               
               Cow position:chrX:2467965-2467645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):88, 97

               
               
               Conread position:9-326
               
               
               Cow position:chrX:6690179-6690482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-326
               
               
               Cow position:chrX:15815165-15814863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 78

               
               
               Conread position:9-326
               
               
               Cow position:chrX:38094439-38094759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-327
               
               
               Cow position:chrX:11856511-11856194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:9-327
               
               
               Cow position:chrX:29601747-29602065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:9-328
               
               
               Cow position:chrX:20801850-20801545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):240, 84

               
               
               Conread position:9-328
               
               
               Cow position:chrX:27680479-27680167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 84

               
               
               Conread position:9-329
               
               
               Cow position:chrX:7646332-7646021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 79

               
               
               Conread position:9-330
               
               
               Cow position:chrX:20697528-20697846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):178, 81

               
               
               Conread position:9-331
               
               
               Cow position:chrX:28865925-28866231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:9-331
               
               
               Cow position:chrX:38218795-38218476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):219, 88

               
               
               Conread position:9-331
               
               
               Cow position:chrX:45598524-45598843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:9-332
               
               
               Cow position:chrX:161493-161188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-332
               
               
               Cow position:chrX:5872398-5872073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 79

               
               
               Conread position:9-332
               
               
               Cow position:chrX:7571986-7571666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-332
               
               
               Cow position:chrX:10865794-10866107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:9-332
               
               
               Cow position:chrX:13913156-13912839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:9-332
               
               
               Cow position:chrX:20710155-20709830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 57

               
               
               Conread position:9-332
               
               
               Cow position:chrX:23583642-23583318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):179, 89

               
               
               Conread position:9-332
               
               
               Cow position:chrX:25035301-25035627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 82

               
               
               Conread position:9-332
               
               
               Cow position:chrX:26440704-26441020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-332
               
               
               Cow position:chrX:27446767-27446448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:9-332
               
               
               Cow position:chrX:29289659-29289336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-332
               
               
               Cow position:chrX:31442748-31443061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 83

               
               
               Conread position:9-332
               
               
               Cow position:chrX:34402081-34401757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:9-332
               
               
               Cow position:chrX:35268942-35268650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):205, 26

               
               
               Conread position:9-333
               
               
               Cow position:chrX:13322906-13323241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:9-334
               
               
               Cow position:chrX:33493857-33493533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:9-340
               
               
               Cow position:chrX:618921-619256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-340
               
               
               Cow position:chrX:27393945-27394262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 78

               
               
               Conread position:9-343
               
               
               Cow position:chrX:39126407-39126089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:9-349
               
               
               Cow position:chrX:37119674-37119342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:9-354
               
               
               Cow position:chrX:23513936-23514280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:9-356
               
               
               Cow position:chrX:17630722-17631066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-358
               
               
               Cow position:chrX:21004765-21004418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 84

               
               
               Conread position:9-360
               
               
               Cow position:chrX:9635110-9635449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:9-360
               
               
               Cow position:chrX:44961832-44961479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:9-362
               
               
               Cow position:chrX:16416590-16416238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 63

               
               
               Conread position:9-370
               
               
               Cow position:chrX:38549528-38549169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:9-414
               
               
               Cow position:chrX:34662765-34663173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:9-414
               
               
               Cow position:chrX:38936781-38936385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:9-414
               
               
               Cow position:chrX:40557598-40557990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:9-414
               
               
               Cow position:chrX:46532414-46532834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:9-415
               
               
               Cow position:chrX:1055300-1055708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):67, 162

               
               
               Conread position:9-415
               
               
               Cow position:chrX:4043786-4044173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:9-415
               
               
               Cow position:chrX:5638088-5638483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 87

               
               
               Conread position:9-415
               
               
               Cow position:chrX:11073110-11073520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chrX:11082541-11082929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 76

               
               
               Conread position:9-415
               
               
               Cow position:chrX:12309305-12309703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:9-415
               
               
               Cow position:chrX:13785282-13785693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):130, 10

               
               
               Conread position:9-415
               
               
               Cow position:chrX:15545963-15545582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):180, 65

               
               
               Conread position:9-415
               
               
               Cow position:chrX:22813143-22812747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):157, 49

               
               
               Conread position:9-415
               
               
               Cow position:chrX:26493087-26492687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:9-415
               
               
               Cow position:chrX:31436555-31436165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):279, 70

               
               
               Conread position:9-415
               
               
               Cow position:chrX:40826670-40827062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:9-415
               
               
               Cow position:chrX:42507567-42507959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:9-416
               
               
               Cow position:chrX:33640056-33639652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:10-231
               
               
               Cow position:chrX:616179-616397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:10-263
               
               
               Cow position:chrX:34792231-34792482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:10-273
               
               
               Cow position:chrX:7336921-7336645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 118

               
               
               Conread position:10-274
               
               
               Cow position:chrX:32821108-32820847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):129, 34

               
               
               Conread position:10-290
               
               
               Cow position:chrX:43779767-43780051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:10-318
               
               
               Cow position:chrX:42171214-42171525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:10-318
               
               
               Cow position:chrX:47054445-47054754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:10-331
               
               
               Cow position:chrX:42994692-42994375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:10-336
               
               
               Cow position:chrX:11938853-11939168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:10-354
               
               
               Cow position:chrX:34543864-34543525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 97

               
               
               Conread position:10-366
               
               
               Cow position:chrX:22624556-22624207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 74

               
               
               Conread position:11-200
               
               
               Cow position:chrX:31515253-31515065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:153
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:11-231
               
               
               Cow position:chrX:4399205-4398994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:11-246
               
               
               Cow position:chrX:25388162-25388383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):152, 24

               
               
               Conread position:11-265
               
               
               Cow position:chrX:27771887-27772134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:11-291
               
               
               Cow position:chrX:29544798-29545079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-293
               
               
               Cow position:chrX:40035361-40035646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:11-294
               
               
               Cow position:chrX:1499744-1499467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 64

               
               
               Conread position:11-307
               
               
               Cow position:chrX:34532599-34532312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:11-316
               
               
               Cow position:chrX:7497322-7497021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:11-316
               
               
               Cow position:chrX:11589509-11589816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:11-318
               
               
               Cow position:chrX:5900541-5900231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 22

               
               
               Conread position:11-318
               
               
               Cow position:chrX:9416605-9416919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:11-318
               
               
               Cow position:chrX:17964443-17964748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 68

               
               
               Conread position:11-318
               
               
               Cow position:chrX:27508943-27509246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:11-326
               
               
               Cow position:chrX:28134418-28134112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:11-331
               
               
               Cow position:chrX:27431839-27432158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-332
               
               
               Cow position:chrX:8731172-8730839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:11-332
               
               
               Cow position:chrX:32170810-32171122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:11-332
               
               
               Cow position:chrX:38964187-38963869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 80

               
               
               Conread position:11-334
               
               
               Cow position:chrX:42011360-42011038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:11-335
               
               
               Cow position:chrX:25815822-25816139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 101

               
               
               Conread position:11-341
               
               
               Cow position:chrX:32623650-32623334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:11-354
               
               
               Cow position:chrX:27287657-27287981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:11-368
               
               
               Cow position:chrX:6203620-6203277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):219, 62

               
               
               Conread position:11-415
               
               
               Cow position:chrX:11656160-11655764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:11-415
               
               
               Cow position:chrX:13647706-13648099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:11-415
               
               
               Cow position:chrX:33855140-33855555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:11-418
               
               
               Cow position:chrX:31260540-31260949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):109, 81

               
               
               Conread position:12-332
               
               
               Cow position:chrX:678477-678808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):81, 194

               
               
               Conread position:12-415
               
               
               Cow position:chrX:13058649-13058249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):213, 58

               
               
               Conread position:13-296
               
               
               Cow position:chrX:4825755-4826032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):145, 85

               
               
               Conread position:13-332
               
               
               Cow position:chrX:44192370-44192683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:13-351
               
               
               Cow position:chrX:28878097-28878420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:14-171
               
               
               Cow position:chrX:126843-126694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:14-205
               
               
               Cow position:chrX:17949417-17949599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:14-226
               
               
               Cow position:chrX:45875468-45875261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):125, 74

               
               
               Conread position:14-245
               
               
               Cow position:chrX:24287857-24288077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):199, 36

               
               
               Conread position:14-264
               
               
               Cow position:chrX:31252484-31252245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:14-276
               
               
               Cow position:chrX:45846177-45845911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 41

               
               
               Conread position:14-332
               
               
               Cow position:chrX:24105700-24105386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:15-318
               
               
               Cow position:chrX:11313705-11314004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 64

               
               
               Conread position:15-348
               
               
               Cow position:chrX:42492448-42492766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):166, 68

               
               
               Conread position:15-350
               
               
               Cow position:chrX:41884337-41884676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):124, 64

               
               
               Conread position:16-277
               
               
               Cow position:chrX:36356185-36355937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:16-311
               
               
               Cow position:chrX:20791741-20792037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-318
               
               
               Cow position:chrX:32431698-32431401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-326
               
               
               Cow position:chrX:25338262-25337945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:16-327
               
               
               Cow position:chrX:20377045-20376732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:16-338
               
               
               Cow position:chrX:15305225-15305534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):214, 58

               
               
               Conread position:16-342
               
               
               Cow position:chrX:24259507-24259828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:17-318
               
               
               Cow position:chrX:19930724-19930430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:17-415
               
               
               Cow position:chrX:11454969-11455384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:17-415
               
               
               Cow position:chrX:41743987-41743598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:19-145
               
               
               Cow position:chrX:7806497-7806376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:19-246
               
               
               Cow position:chrX:630238-630455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:19-318
               
               
               Cow position:chrX:27176241-27176546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):184, 60

               
               
               Conread position:19-332
               
               
               Cow position:chrX:1810089-1810401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:19-334
               
               
               Cow position:chrX:8517943-8517634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):120, 81

               
               
               Conread position:19-415
               
               
               Cow position:chrX:32310176-32309786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:20-204
               
               
               Cow position:chrX:20790983-20790813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:20-205
               
               
               Cow position:chrX:29194300-29194125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 23

               
               
               Conread position:20-274
               
               
               Cow position:chrX:47165816-47166067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-286
               
               
               Cow position:chrX:45993298-45993024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:20-300
               
               
               Cow position:chrX:6234379-6234657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:20-318
               
               
               Cow position:chrX:46722664-46722967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:20-318
               
               
               Cow position:chrX:47967677-47967373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:20-318
               
               
               Cow position:chrX:48010674-48010368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 64

               
               
               Conread position:20-332
               
               
               Cow position:chrX:45403755-45404074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:20-332
               
               
               Cow position:chrX:47344366-47344054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 72

               
               
               Conread position:20-405
               
               
               Cow position:chrX:43527578-43527198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:20-410
               
               
               Cow position:chrX:10831420-10831822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:20-415
               
               
               Cow position:chrX:8900092-8899709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:21-233
               
               
               Cow position:chrX:37986297-37986096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:21-278
               
               
               Cow position:chrX:48035494-48035241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:21-311
               
               
               Cow position:chrX:23091939-23091662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):221, 64

               
               
               Conread position:21-318
               
               
               Cow position:chrX:878311-878597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):208, 72

               
               
               Conread position:21-324
               
               
               Cow position:chrX:22074865-22074568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:21-332
               
               
               Cow position:chrX:40269560-40269236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:21-342
               
               
               Cow position:chrX:26875812-26876131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:21-350
               
               
               Cow position:chrX:39558279-39558605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:21-352
               
               
               Cow position:chrX:43567988-43567679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:21-403
               
               
               Cow position:chrX:14883887-14884267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:22-310
               
               
               Cow position:chrX:48236887-48236593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:23-224
               
               
               Cow position:chrX:5679502-5679691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:23-225
               
               
               Cow position:chrX:26493566-26493766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):118, 56

               
               
               Conread position:23-233
               
               
               Cow position:chrX:34315586-34315393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:23-279
               
               
               Cow position:chrX:7162126-7161884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 69

               
               
               Conread position:23-292
               
               
               Cow position:chrX:3580011-3579744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):154, 69

               
               
               Conread position:23-318
               
               
               Cow position:chrX:8925766-8925477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:23-415
               
               
               Cow position:chrX:36778475-36778090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:24-209
               
               
               Cow position:chrX:38654364-38654543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:24-350
               
               
               Cow position:chrX:40692685-40692996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:25-332
               
               
               Cow position:chrX:21593352-21593043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:25-414
               
               
               Cow position:chrX:19188996-19188622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):114, 60

               
               
               Conread position:26-293
               
               
               Cow position:chrX:34270466-34270204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):160, 67

               
               
               Conread position:26-332
               
               
               Cow position:chrX:12018356-12018035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:26-344
               
               
               Cow position:chrX:7509207-7508887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):113, 53

               
               
               Conread position:27-318
               
               
               Cow position:chrX:7351363-7351073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):112, 59

               
               
               Conread position:27-318
               
               
               Cow position:chrX:25232656-25232364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:27-332
               
               
               Cow position:chrX:39938460-39938757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:28-316
               
               
               Cow position:chrX:12826814-12826523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:28-332
               
               
               Cow position:chrX:30163062-30162757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:29-198
               
               
               Cow position:chrX:16348503-16348672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 72

               
               
               Conread position:29-289
               
               
               Cow position:chrX:36961702-36961438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:29-293
               
               
               Cow position:chrX:17908227-17908485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:29-352
               
               
               Cow position:chrX:1514351-1514662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 54

               
               
               Conread position:30-184
               
               
               Cow position:chrX:20881879-20882025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:30-296
               
               
               Cow position:chrX:9425683-9425946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):109, 41

               
               
               Conread position:30-307
               
               
               Cow position:chrX:33466669-33466398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:30-309
               
               
               Cow position:chrX:14599597-14599312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-317
               
               
               Cow position:chrX:37836646-37836361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:30-317
               
               
               Cow position:chrX:38071706-38071996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 64

               
               
               Conread position:30-318
               
               
               Cow position:chrX:41166902-41167190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 58

               
               
               Conread position:30-318
               
               
               Cow position:chrX:44397073-44396789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:30-326
               
               
               Cow position:chrX:41878870-41879165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:30-332
               
               
               Cow position:chrX:7718909-7718613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):202, 58

               
               
               Conread position:30-344
               
               
               Cow position:chrX:17662535-17662849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:31-264
               
               
               Cow position:chrX:18999953-18999716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 24

               
               
               Conread position:31-279
               
               
               Cow position:chrX:41991986-41992228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:31-318
               
               
               Cow position:chrX:40789272-40788978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:31-348
               
               
               Cow position:chrX:21672613-21672295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:32-334
               
               
               Cow position:chrX:10373376-10373065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:32-414
               
               
               Cow position:chrX:9226916-9227298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 73

               
               
               Conread position:32-415
               
               
               Cow position:chrX:11614756-11614406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:32-415
               
               
               Cow position:chrX:12249869-12249486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:33-316
               
               
               Cow position:chrX:10437607-10437889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 5

               
               
               Conread position:34-350
               
               
               Cow position:chrX:9855354-9855042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 56

               
               
               Conread position:35-232
               
               
               Cow position:chrX:18417535-18417725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:35-282
               
               
               Cow position:chrX:3488828-3489075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 47

               
               
               Conread position:35-318
               
               
               Cow position:chrX:28845888-28845620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:38-240
               
               
               Cow position:chrX:23667178-23666978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:38-317
               
               
               Cow position:chrX:20151912-20151625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:38-318
               
               
               Cow position:chrX:42875035-42874752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:38-326
               
               
               Cow position:chrX:42461692-42461980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-331
               
               
               Cow position:chrX:48243414-48243691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:38-332
               
               
               Cow position:chrX:25238232-25237938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:38-336
               
               
               Cow position:chrX:13382383-13382080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:38-350
               
               
               Cow position:chrX:9954191-9953883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 49

               
               
               Conread position:39-318
               
               
               Cow position:chrX:27516581-27516306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:39-415
               
               
               Cow position:chrX:5017360-5017721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:39-415
               
               
               Cow position:chrX:35681393-35681020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:40-317
               
               
               Cow position:chrX:15139497-15139770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:40-318
               
               
               Cow position:chrX:8797306-8797022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 53

               
               
               Conread position:40-318
               
               
               Cow position:chrX:47191357-47191625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:42-318
               
               
               Cow position:chrX:41199156-41198878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:42-412
               
               
               Cow position:chrX:17498133-17497784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:43-318
               
               
               Cow position:chrX:16789809-16790063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):96, 7

               
               
               Conread position:45-332
               
               
               Cow position:chrX:11581979-11581694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:45-354
               
               
               Cow position:chrX:46045090-46044782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):143, 43

               
               
               Conread position:46-332
               
               
               Cow position:chrX:36249817-36250102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):142, 47

               
               
               Conread position:47-203
               
               
               Cow position:chrX:35848607-35848454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):92, 25

               
               
               Conread position:47-229
               
               
               Cow position:chrX:36723046-36723224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:47-318
               
               
               Cow position:chrX:14925043-14924774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:47-330
               
               
               Cow position:chrX:40648029-40647740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:48-318
               
               
               Cow position:chrX:47379425-47379693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:51-334
               
               
               Cow position:chrX:2383533-2383247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:52-348
               
               
               Cow position:chrX:23970417-23970133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:52-415
               
               
               Cow position:chrX:32127954-32128309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):130, 41

               
               
               Conread position:54-290
               
               
               Cow position:chrX:30832816-30833044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):160, 32

               
               
               Conread position:55-245
               
               
               Cow position:chrX:8913958-8913775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:55-245
               
               
               Cow position:chrX:8915702-8915519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:55-245
               
               
               Cow position:chrX:35969051-35969232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:55-296
               
               
               Cow position:chrX:26286016-26285775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:55-300
               
               
               Cow position:chrX:28835867-28836109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:55-317
               
               
               Cow position:chrX:9997299-9997558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:56-265
               
               
               Cow position:chrX:29056152-29055950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:56-308
               
               
               Cow position:chrX:40567632-40567383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:56-318
               
               
               Cow position:chrX:40116451-40116199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):176, 36

               
               
               Conread position:56-326
               
               
               Cow position:chrX:38439515-38439239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:56-342
               
               
               Cow position:chrX:8558427-8558713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:57-318
               
               
               Cow position:chrX:35542928-35542665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:57-331
               
               
               Cow position:chrX:17271248-17271528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:57-332
               
               
               Cow position:chrX:19015470-19015202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):185, 40

               
               
               Conread position:57-415
               
               
               Cow position:chrX:34991069-34990726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:58-307
               
               
               Cow position:chrX:43409041-43408783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 38

               
               
               Conread position:59-311
               
               
               Cow position:chrX:281156-280915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:60-318
               
               
               Cow position:chrX:23497637-23497889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:62-332
               
               
               Cow position:chrX:44053288-44053018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:62-333
               
               
               Cow position:chrX:48246810-48247073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 107

               
               
               Conread position:62-345
               
               
               Cow position:chrX:47756900-47757182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:63-318
               
               
               Cow position:chrX:2648323-2648576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:64-189
               
               
               Cow position:chrX:22376680-22376560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:74-415
               
               
               Cow position:chrX:34754168-34754507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:77-282
               
               
               Cow position:chrX:37541148-37540934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:79-362
               
               
               Cow position:chrX:35284636-35284347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:80-357
               
               
               Cow position:chrX:2700794-2701077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:82-317
               
               
               Cow position:chrX:29509426-29509669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:82-332
               
               
               Cow position:chrX:9161600-9161348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:83-322
               
               
               Cow position:chrX:41674123-41673873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:84-317
               
               
               Cow position:chrX:4750293-4750523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:84-332
               
               
               Cow position:chrX:20583032-20582790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):135, 12

               
               
               Conread position:84-332
               
               
               Cow position:chrX:34376958-34376717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:85-311
               
               
               Cow position:chrX:37574854-37574637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:85-318
               
               
               Cow position:chrX:1728417-1728643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):157, 29

               
               
               Conread position:85-318
               
               
               Cow position:chrX:34192682-34192451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:86-415
               
               
               Cow position:chrX:33827006-33827347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:87-278
               
               
               Cow position:chrX:31256874-31256681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:87-332
               
               
               Cow position:chrX:35409668-35409428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:87-332
               
               
               Cow position:chrX:38227082-38227330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:87-354
               
               
               Cow position:chrX:16283936-16284209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:88-368
               
               
               Cow position:chrX:37137975-37138250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:89-318
               
               
               Cow position:chrX:45414295-45414526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:89-331
               
               
               Cow position:chrX:36693243-36692996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:89-393
               
               
               Cow position:chrX:1978519-1978203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:89-415
               
               
               Cow position:chrX:160024-160347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 212

               
               
               Conread position:89-415
               
               
               Cow position:chrX:39701230-39700903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:90-308
               
               
               Cow position:chrX:41560247-41560455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:90-325
               
               
               Cow position:chrX:9201557-9201314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 214

               
               
               Conread position:91-342
               
               
               Cow position:chrX:8681921-8682180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:92-308
               
               
               Cow position:chrX:45015582-45015369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:92-318
               
               
               Cow position:chrX:42338943-42339162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:94-368
               
               
               Cow position:chrX:30420934-30421214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:95-354
               
               
               Cow position:chrX:7513512-7513254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):138, 32

               
               
               Conread position:96-260
               
               
               Cow position:chrX:14003640-14003813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-317
               
               
               Cow position:chrX:4996595-4996386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:96-318
               
               
               Cow position:chrX:42381102-42381326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:96-415
               
               
               Cow position:chrX:41403980-41403646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:96-415
               
               
               Cow position:chrX:41410528-41410194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:97-330
               
               
               Cow position:chrX:38840889-38840650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:101-340
               
               
               Cow position:chrX:31745066-31745295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:102-318
               
               
               Cow position:chrX:42855404-42855182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:103-311
               
               
               Cow position:chrX:36283347-36283126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:104-293
               
               
               Cow position:chrX:46315384-46315582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:104-318
               
               
               Cow position:chrX:37048584-37048807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:104-354
               
               
               Cow position:chrX:42282421-42282174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:105-301
               
               
               Cow position:chrX:4091640-4091436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:105-318
               
               
               Cow position:chrX:21665602-21665819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:105-327
               
               
               Cow position:chrX:877041-877258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:105-332
               
               
               Cow position:chrX:15485633-15485868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:105-415
               
               
               Cow position:chrX:24424397-24424707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:106-318
               
               
               Cow position:chrX:35609980-35609760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-333
               
               
               Cow position:chrX:35387911-35388148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:106-412
               
               
               Cow position:chrX:11562148-11561831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):17, 188

               
               
               Conread position:107-316
               
               
               Cow position:chrX:17042683-17042466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:108-348
               
               
               Cow position:chrX:2029381-2029134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:109-334
               
               
               Cow position:chrX:43049337-43049100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:112-318
               
               
               Cow position:chrX:48684239-48684449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:112-332
               
               
               Cow position:chrX:38006779-38007008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:113-296
               
               
               Cow position:chrX:35273339-35273147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:113-296
               
               
               Cow position:chrX:47046522-47046724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:113-318
               
               
               Cow position:chrX:30922170-30921959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:113-318
               
               
               Cow position:chrX:40183359-40183576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:113-333
               
               
               Cow position:chrX:34454649-34454428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:113-415
               
               
               Cow position:chrX:40452225-40452528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):26, 230

               
               
               Conread position:114-332
               
               
               Cow position:chrX:28846898-28847119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:114-332
               
               
               Cow position:chrX:33020467-33020246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:114-339
               
               
               Cow position:chrX:44063737-44063964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:116-282
               
               
               Cow position:chrX:18195916-18195751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:117-332
               
               
               Cow position:chrX:38967628-38967410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:117-334
               
               
               Cow position:chrX:25411821-25411598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:123-241
               
               
               Cow position:chrX:24149615-24149495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:123-331
               
               
               Cow position:chrX:4942782-4942988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:127-326
               
               
               Cow position:chrX:24201157-24200959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:130-316
               
               
               Cow position:chrX:7806345-7806153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:131-363
               
               
               Cow position:chrX:46984526-46984773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:132-350
               
               
               Cow position:chrX:2206585-2206802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:133-415
               
               
               Cow position:chrX:4123802-4123520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 209

               
               
               Conread position:137-316
               
               
               Cow position:chrX:16324005-16324187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:138-332
               
               
               Cow position:chrX:11806055-11806257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:146-332
               
               
               Cow position:chrX:16531948-16531759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:150-415
               
               
               Cow position:chrX:32978311-32978572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:151-348
               
               
               Cow position:chrX:6640076-6639868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:152-318
               
               
               Cow position:chrX:15596988-15596812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:152-352
               
               
               Cow position:chrX:21663255-21663049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:155-317
               
               
               Cow position:chrX:46700884-46701044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:158-318
               
               
               Cow position:chrX:48536724-48536891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):76, 137

               
               
               Conread position:169-345
               
               
               Cow position:chrX:42499099-42499282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:169-364
               
               
               Cow position:chrX:905278-905080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:170-318
               
               
               Cow position:chrX:25283224-25283372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:173-415
               
               
               Cow position:chrX:7382246-7382009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 144

               
               
               Conread position:175-415
               
               
               Cow position:chrX:44908240-44908001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 201

               
               
               Conread position:176-318
               
               
               Cow position:chrX:29049884-29049744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:179-318
               
               
               Cow position:chrX:45787568-45787428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:183-353
               
               
               Cow position:chrX:17122095-17122264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:183-356
               
               
               Cow position:chrX:47243361-47243543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:186-373
               
               
               Cow position:chrX:20168117-20167923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:192-415
               
               
               Cow position:chrX:37205627-37205404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:197-364
               
               
               Cow position:chrX:33519520-33519345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:215-364
               
               
               Cow position:chrX:48578294-48578143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:224-415
               
               
               Cow position:chrX:6654434-6654625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):138, 153
Conread position:	1-162
Cow position:	chr1:72684762-72684610 (view UCSC Genome Browser custom track)
Alignm length:	164
Alignm identity:	124
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	5, 29
Conread position:	1-198
Cow position:	chr1:3607873-3607688 (view UCSC Genome Browser custom track)
Alignm length:	200
Alignm identity:	146
Alignm E-value:	9e-22
Alignm gaps (pig, cow):	5, 43
Conread position:	1-219
Cow position:	chr1:87440537-87440325 (view UCSC Genome Browser custom track)
Alignm length:	220
Alignm identity:	151
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	7, 79
Conread position:	1-226
Cow position:	chr1:31272373-31272591 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	159
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	5, 93
Conread position:	1-232
Cow position:	chr1:46035881-46036116 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	167
Alignm E-value:	8e-32
Alignm gaps (pig, cow):	9, 181
Conread position:	1-235
Cow position:	chr1:14308962-14309197 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	168
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	9, 94
Conread position:	1-238
Cow position:	chr1:88913389-88913155 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	166
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	15, 97
Conread position:	1-240
Cow position:	chr1:57880714-57880953 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	165
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	9, 94
Conread position:	1-263
Cow position:	chr1:13810717-13810457 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	188
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	9, 80
Conread position:	1-264
Cow position:	chr1:89498023-89497773 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	186
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	96, 15
Conread position:	1-275
Cow position:	chr1:72103920-72103643 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	202
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	9, 87
Conread position:	1-277
Cow position:	chr1:75142067-75141801 (view UCSC Genome Browser custom track)
Alignm length:	282
Alignm identity:	210
Alignm E-value:	3.00018e-42
Alignm gaps (pig, cow):	9, 94
Conread position:	1-291
Cow position:	chr1:77132677-77132385 (view UCSC Genome Browser custom track)
Alignm length:	297
Alignm identity:	189
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	138, 15
Conread position:	1-296
Cow position:	chr1:43357941-43358239 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	207
Alignm E-value:	6e-29
Alignm gaps (pig, cow):	15, 31
Conread position:	1-309
Cow position:	chr1:68951695-68951394 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	229
Alignm E-value:	0
Alignm gaps (pig, cow):	138, 86
Conread position:	1-310
Cow position:	chr1:70297348-70297033 (view UCSC Genome Browser custom track)
Alignm length:	323
Alignm identity:	211
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	9, 79
Conread position:	1-314
Cow position:	chr1:25281587-25281918 (view UCSC Genome Browser custom track)
Alignm length:	336
Alignm identity:	233
Alignm E-value:	4e-36
Alignm gaps (pig, cow):	9, 92
Conread position:	1-316
Cow position:	chr1:21954153-21954462 (view UCSC Genome Browser custom track)
Alignm length:	325
Alignm identity:	222
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	76, 100
Conread position:	1-317
Cow position:	chr1:6939565-6939884 (view UCSC Genome Browser custom track)
Alignm length:	325
Alignm identity:	215
Alignm E-value:	7e-30
Alignm gaps (pig, cow):	25, 80
Conread position:	1-318
Cow position:	chr1:1185799-1185493 (view UCSC Genome Browser custom track)
Alignm length:	328
Alignm identity:	227
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	9, 78