Cow genome map
| Conread name: | Tra1-TCH01F050038 |
| Conread position: | 2-358 |
| Cow position: | chr1:77389811-77389464 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 83 |
| Conread position: | 4-366 |
| Cow position: | chr1:76555549-76555186 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 5-311 |
| Cow position: | chr1:13054846-13055139 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 151, 89 |
| Conread position: | 5-366 |
| Cow position: | chr1:79914079-79914435 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 79, 269 |
| Conread position: | 5-366 |
| Cow position: | chr1:81926020-81925657 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 79, 54 |
| Conread position: | 5-376 |
| Cow position: | chr1:99689925-99690294 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 99 |
| Conread position: | 6-376 |
| Cow position: | chr1:33189258-33189640 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 2-302 |
| Cow position: | chr10:42116524-42116823 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 6-386 |
| Cow position: | chr10:11623538-11623158 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 119, 77 |
| Conread position: | 5-363 |
| Cow position: | chr11:58211561-58211213 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 264-417 |
| Cow position: | chr11:16592631-16592783 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 8 |
| Conread position: | 5-203 |
| Cow position: | chr13:55780629-55780435 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 5-390 |
| Cow position: | chr13:21764253-21764620 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 61 |
| Conread position: | 6-214 |
| Cow position: | chr13:54312962-54313164 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 244-411 |
| Cow position: | chr13:18186167-18186010 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 116 |
| Conread position: | 7-394 |
| Cow position: | chr14:29641896-29642270 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 3-240 |
| Cow position: | chr15:4103992-4103761 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 97 |
| Conread position: | 5-386 |
| Cow position: | chr15:9121863-9122234 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 151 |
| Conread position: | 5-390 |
| Cow position: | chr15:13417033-13417421 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 119 |
| Conread position: | 2-192 |
| Cow position: | chr16:46224208-46224021 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 2-387 |
| Cow position: | chr16:25892935-25893315 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 5-267 |
| Cow position: | chr16:24062074-24061823 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 6-383 |
| Cow position: | chr16:28193873-28193494 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 78, 113 |
| Conread position: | 7-324 |
| Cow position: | chr16:19780719-19780412 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 11-371 |
| Cow position: | chr16:7340216-7340576 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 74 |
| Conread position: | 6-366 |
| Cow position: | chr17:18892659-18893013 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 94 |
| Conread position: | 6-386 |
| Cow position: | chr17:4063327-4063701 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 122 |
| Conread position: | 8-377 |
| Cow position: | chr17:4085057-4085422 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 5-342 |
| Cow position: | chr19:14175663-14176010 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 140 |
| Conread position: | 5-357 |
| Cow position: | chr19:41852277-41851920 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 79, 92 |
| Conread position: | 5-390 |
| Cow position: | chr19:52466071-52465688 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 3-419 |
| Cow position: | chr2:62039384-62039003 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 5-349 |
| Cow position: | chr2:75408279-75408623 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 7-385 |
| Cow position: | chr2:70524417-70524798 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 112 |
| Conread position: | 5-391 |
| Cow position: | chr20:33295771-33295386 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 237, 150 |
| Conread position: | 5-312 |
| Cow position: | chr21:219774-220072 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 5-391 |
| Cow position: | chr21:45790397-45790776 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 81, 93 |
| Conread position: | 5-378 |
| Cow position: | chr22:11988591-11988218 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 6-240 |
| Cow position: | chr22:44799499-44799267 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 7-340 |
| Cow position: | chr22:15606286-15605959 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 149 |
| Conread position: | 2-378 |
| Cow position: | chr24:33122125-33122500 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 141 |
| Conread position: | 5-236 |
| Cow position: | chr24:33775268-33775041 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 5-317 |
| Cow position: | chr28:28441889-28442196 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 115 |
| Conread position: | 5-378 |
| Cow position: | chr28:21856049-21855673 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 6-308 |
| Cow position: | chr28:15736795-15736494 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 2-370 |
| Cow position: | chr29:34737569-34737209 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 5-391 |
| Cow position: | chr29:22949771-22949397 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 59 |
| Conread position: | 8-386 |
| Cow position: | chr29:34333275-34332903 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 5-364 |
| Cow position: | chr3:49296789-49297141 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 102 |
| Conread position: | 5-394 |
| Cow position: | chr3:58207813-58207427 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 6-310 |
| Cow position: | chr3:74850106-74849802 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 78, 147 |
| Conread position: | 8-341 |
| Cow position: | chr3:3845924-3845600 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 149 |
| Conread position: | 3-387 |
| Cow position: | chr4:17471285-17471658 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 5-352 |
| Cow position: | chr4:59119253-59118913 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 115 |
| Conread position: | 2-385 |
| Cow position: | chr5:10542728-10542348 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 117, 149 |
| Conread position: | 5-418 |
| Cow position: | chr5:52605680-52605265 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 115 |
| Conread position: | 2-366 |
| Cow position: | chr6:1536786-1537151 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 2-384 |
| Cow position: | chr7:47190570-47190186 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 82, 117 |
| Conread position: | 40-366 |
| Cow position: | chr7:47910109-47909783 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 5-370 |
| Cow position: | chr8:55342943-55343285 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 242, 113 |
| Conread position: | 6-370 |
| Cow position: | chr9:23297893-23297532 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 94 |
| Conread position: | 7-376 |
| Cow position: | chr9:28702465-28702834 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 112 |
| Conread position: | 205-392 |
| Cow position: | chr9:58133391-58133202 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-390 |
| Cow position: | chrX:5841233-5841602 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 5-386 |
| Cow position: | chrX:40496656-40496284 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 80 |