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Cow genome map

           
Conread name:
           
Utr1-UTR010047F01
        

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:70388419-70388042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr1:58169518-58169146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr1:6197378-6196983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 291
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr1:18962829-18962436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr1:66490479-66490876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 187
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr1:77747643-77748038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 134
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr1:57744328-57743925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr1:80667103-80667558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
78, 57
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr1:81926287-81925837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr1:31253706-31253292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
239, 18
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr1:61332064-61331683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr1:38711611-38712007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr1:57363430-57363038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr1:82478883-82479278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr1:88178756-88179153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr1:90912727-90913124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr1:25088774-25088356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr1:40483393-40482948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 125
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr1:51875903-51875473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr1:54116153-54116589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr1:21431401-21430964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr1:23039994-23040434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 216
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr1:58196143-58195716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr1:99864816-99865262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr1:57679464-57679102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 284
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr1:40920040-40920433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
60, 186
               

               
Conread position:
               
4-422
               

               
Cow position:
               
chr1:33443259-33442832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
5-358
               

               
Cow position:
               
chr1:28650734-28650374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
6-428
               

               
Cow position:
               
chr1:88267235-88266799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 25
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr1:31324483-31324139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
15-431
               

               
Cow position:
               
chr1:55220618-55220164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 37
               

               
Conread position:
               
62-407
               

               
Cow position:
               
chr1:95474926-95474582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
174, 86
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr1:63035586-63035916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
179, 56
               

               
Conread position:
               
65-382
               

               
Cow position:
               
chr1:19161934-19162262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
112, 120
               

               
Conread position:
               
79-424
               

               
Cow position:
               
chr1:77656526-77656882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
9, 214
               

               
Conread position:
               
82-371
               

               
Cow position:
               
chr1:18137449-18137154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
91-377
               

               
Cow position:
               
chr1:25224425-25224135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 249
               

               
Conread position:
               
101-422
               

               
Cow position:
               
chr1:62525888-62526209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
150, 83
               

               
Conread position:
               
103-376
               

               
Cow position:
               
chr1:67317706-67317993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 168
               

               
Conread position:
               
106-430
               

               
Cow position:
               
chr1:25120261-25119932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
107-383
               

               
Cow position:
               
chr1:3970257-3969969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
135, 186
               

               
Conread position:
               
108-431
               

               
Cow position:
               
chr1:38383558-38383224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 34
               

               
Conread position:
               
125-383
               

               
Cow position:
               
chr1:52355648-52355377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 165
               

               
Conread position:
               
126-409
               

               
Cow position:
               
chr1:53519692-53519984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
126-430
               

               
Cow position:
               
chr1:58218132-58218442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
111, 19
               

               
Conread position:
               
143-368
               

               
Cow position:
               
chr1:475221-475457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
147-408
               

               
Cow position:
               
chr1:88027876-88028145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 26
               

               
Conread position:
               
154-368
               

               
Cow position:
               
chr1:12468732-12468510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
266-430
               

               
Cow position:
               
chr1:53487653-53487822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
267-430
               

               
Cow position:
               
chr1:61536536-61536371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
279-423
               

               
Cow position:
               
chr1:40534423-40534278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
297-428
               

               
Cow position:
               
chr1:89263401-89263270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr10:14846181-14846573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr10:19141687-19141289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 292
               

               
Conread position:
               
2-413
               

               
Cow position:
               
chr10:44669737-44669315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 110
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr10:17544099-17543654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr10:9609453-9609091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 289
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr10:48170444-48170806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 292
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr10:4500875-4501259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr10:21398298-21397901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr10:32560038-32560485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 230
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr10:58600536-58600980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr10:58938715-58938324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
5-404
               

               
Cow position:
               
chr10:28528493-28528090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
7-360
               

               
Cow position:
               
chr10:31738937-31739278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr10:43287068-43286717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
63-428
               

               
Cow position:
               
chr10:16586093-16586465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 231
               

               
Conread position:
               
68-428
               

               
Cow position:
               
chr10:1186157-1185794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
179, 92
               

               
Conread position:
               
68-428
               

               
Cow position:
               
chr10:17922047-17922406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
212, 169
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr10:47392402-47392047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 59
               

               
Conread position:
               
94-423
               

               
Cow position:
               
chr10:25072514-25072163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
111-430
               

               
Cow position:
               
chr10:54960693-54960361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
140, 55
               

               
Conread position:
               
147-431
               

               
Cow position:
               
chr10:19598554-19598268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
168-381
               

               
Cow position:
               
chr10:19523052-19522835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
266-430
               

               
Cow position:
               
chr10:19542210-19542039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
273-430
               

               
Cow position:
               
chr10:8469210-8469372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
282-423
               

               
Cow position:
               
chr10:57523122-57523265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr11:67863715-67863322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr11:40486722-40487143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr11:49237403-49236977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr11:3682274-3681834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 165
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr11:41101486-41101922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 13
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr11:67741473-67741018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr11:11591545-11591900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr11:81338825-81338442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr11:35738781-35738384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr11:57625615-57625232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
61, 162
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr11:18146984-18146568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 187
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr11:45652345-45651905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 44
               

               
Conread position:
               
3-432
               

               
Cow position:
               
chr11:8018333-8018775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 43
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr11:59601173-59601516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
6-418
               

               
Cow position:
               
chr11:21477175-21477582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
17-413
               

               
Cow position:
               
chr11:8551366-8551800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
68-411
               

               
Cow position:
               
chr11:60824406-60824759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
174, 195
               

               
Conread position:
               
72-389
               

               
Cow position:
               
chr11:28393512-28393841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
170, 210
               

               
Conread position:
               
86-383
               

               
Cow position:
               
chr11:76767067-76767375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 211
               

               
Conread position:
               
86-414
               

               
Cow position:
               
chr11:61426343-61426679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
169, 302
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr11:21471284-21471615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
153, 219
               

               
Conread position:
               
100-400
               

               
Cow position:
               
chr11:73466536-73466231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
106-430
               

               
Cow position:
               
chr11:40015847-40016178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 80
               

               
Conread position:
               
110-414
               

               
Cow position:
               
chr11:2548159-2548474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
128-430
               

               
Cow position:
               
chr11:8830076-8829765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
114, 80
               

               
Conread position:
               
174-383
               

               
Cow position:
               
chr11:41229262-41229044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 116
               

               
Conread position:
               
180-430
               

               
Cow position:
               
chr11:76960205-76960467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 115
               

               
Conread position:
               
266-429
               

               
Cow position:
               
chr11:42309343-42309174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr12:41288181-41288620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr12:17968834-17969215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr12:250469-250079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
71, 292
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr12:22565884-22566276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 208
               

               
Conread position:
               
2-402
               

               
Cow position:
               
chr12:10165094-10164700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
203, 49
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr12:8628351-8627976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 224
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr12:24980566-24980961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 295
               

               
Conread position:
               
42-430
               

               
Cow position:
               
chr12:42558169-42557779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
57-380
               

               
Cow position:
               
chr12:32220001-32220338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
63-368
               

               
Cow position:
               
chr12:8626220-8626528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
179, 157
               

               
Conread position:
               
68-383
               

               
Cow position:
               
chr12:21251397-21251073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
109, 117
               

               
Conread position:
               
162-434
               

               
Cow position:
               
chr12:35347634-35347896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
163-405
               

               
Cow position:
               
chr12:15823572-15823323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 120
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr13:10732621-10733057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 173
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr13:47536745-47537102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 130
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr13:36936367-36936764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 188
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr13:3014814-3015174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
61, 177
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr13:34088961-34089340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 186
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr13:33169112-33168766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 29
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr13:22275437-22275810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 145
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr13:6360503-6360898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr13:3651807-3651411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 295
               

               
Conread position:
               
4-406
               

               
Cow position:
               
chr13:24237190-24237584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
166, 24
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr13:42072610-42072242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
6-383
               

               
Cow position:
               
chr13:34032805-34033187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
19-430
               

               
Cow position:
               
chr13:26987257-26986829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
68-383
               

               
Cow position:
               
chr13:26204752-26204426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
109, 117
               

               
Conread position:
               
68-430
               

               
Cow position:
               
chr13:4443162-4442792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
71-389
               

               
Cow position:
               
chr13:34332403-34332725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
168, 136
               

               
Conread position:
               
83-409
               

               
Cow position:
               
chr13:3783857-3784189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
161, 217
               

               
Conread position:
               
89-383
               

               
Cow position:
               
chr13:52459431-52459130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
153, 91
               

               
Conread position:
               
128-382
               

               
Cow position:
               
chr13:55405482-55405740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
166-425
               

               
Cow position:
               
chr13:11571863-11571592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
166-430
               

               
Cow position:
               
chr13:11253295-11253027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
265-430
               

               
Cow position:
               
chr13:45002800-45002627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
267-424
               

               
Cow position:
               
chr13:17329116-17328952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr14:12945276-12944846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 56
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr14:45739815-45739414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 215
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr14:40720385-40720792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
2-413
               

               
Cow position:
               
chr14:38226494-38226073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr14:21200426-21200856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
71, 297
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr14:41766582-41766996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 176
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr14:23528487-23528042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
84, 221
               

               
Conread position:
               
2-432
               

               
Cow position:
               
chr14:18107074-18107499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
237, 22
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr14:44254314-44253913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr14:46302412-46302807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr14:50113876-50114271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 288
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr14:45582836-45583266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr14:11637069-11637503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
5-413
               

               
Cow position:
               
chr14:17771675-17771245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 191
               

               
Conread position:
               
5-428
               

               
Cow position:
               
chr14:11564048-11564487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
5-428
               

               
Cow position:
               
chr14:25430155-25430602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
59, 224
               

               
Conread position:
               
6-382
               

               
Cow position:
               
chr14:35428009-35428393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
39-368
               

               
Cow position:
               
chr14:50136814-50137159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
25, 259
               

               
Conread position:
               
102-427
               

               
Cow position:
               
chr14:5075600-5075937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 192
               

               
Conread position:
               
113-430
               

               
Cow position:
               
chr14:18322572-18322900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
128, 52
               

               
Conread position:
               
130-435
               

               
Cow position:
               
chr14:5196265-5195948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
112, 27
               

               
Conread position:
               
172-430
               

               
Cow position:
               
chr14:13415971-13416239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 137
               

               
Conread position:
               
208-430
               

               
Cow position:
               
chr14:7598491-7598721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr15:17699703-17700074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
38, 170
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr15:32858375-32858771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 292
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr15:7547384-7547774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 183
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr15:10477610-10477222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr15:13430333-13430728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
2-410
               

               
Cow position:
               
chr15:47202055-47201634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
71, 118
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr15:13679892-13680331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 105
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr15:4388259-4388652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr15:8628821-8629215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr15:17074852-17074456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr15:35750785-35750389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 290
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr15:2021932-2021533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr15:23173555-23173132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr15:21825376-21825772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 290
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr15:33700014-33700466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 293
               

               
Conread position:
               
5-430
               

               
Cow position:
               
chr15:23275063-23274633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
6-408
               

               
Cow position:
               
chr15:7553127-7553538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
7-405
               

               
Cow position:
               
chr15:22712249-22712657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
7-430
               

               
Cow position:
               
chr15:9736203-9735769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
54, 113
               

               
Conread position:
               
8-430
               

               
Cow position:
               
chr15:21367103-21366662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
96-360
               

               
Cow position:
               
chr15:53341608-53341875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
101-428
               

               
Cow position:
               
chr15:24097220-24097555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 105
               

               
Conread position:
               
106-428
               

               
Cow position:
               
chr15:19257122-19256791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
108-351
               

               
Cow position:
               
chr15:24047888-24048140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
133, 181
               

               
Conread position:
               
155-383
               

               
Cow position:
               
chr15:5913911-5913671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 140
               

               
Conread position:
               
164-430
               

               
Cow position:
               
chr15:2436183-2436460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
190-407
               

               
Cow position:
               
chr15:23057954-23057722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr16:49231119-49230741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 295
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr16:11054158-11054550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr16:14352519-14352125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 151
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr16:15980216-15979819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 151
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr16:2480979-2480597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 184
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr16:3769848-3769452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr16:12161117-12160724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr16:25444040-25444435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr16:43563230-43562836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 288
               

               
Conread position:
               
3-405
               

               
Cow position:
               
chr16:11309525-11309927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
3-405
               

               
Cow position:
               
chr16:30052111-30052529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 297
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr16:28473761-28473325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
17-383
               

               
Cow position:
               
chr16:55578848-55579203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 80
               

               
Conread position:
               
71-351
               

               
Cow position:
               
chr16:45655353-45655068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
183, 41
               

               
Conread position:
               
107-414
               

               
Cow position:
               
chr16:340053-340369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
143, 301
               

               
Conread position:
               
115-428
               

               
Cow position:
               
chr16:13777190-13777515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
122-381
               

               
Cow position:
               
chr16:48104375-48104642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
117, 169
               

               
Conread position:
               
178-427
               

               
Cow position:
               
chr16:28855860-28855606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
197-429
               

               
Cow position:
               
chr16:42711552-42711305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
257-431
               

               
Cow position:
               
chr16:24062069-24061896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr17:1457661-1457212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 138
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr17:5043866-5043440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr17:20642441-20642880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr17:18854945-18855311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr17:20694923-20695325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 226
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr17:13930620-13931014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
4-414
               

               
Cow position:
               
chr17:1655035-1654613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
6-430
               

               
Cow position:
               
chr17:9752522-9752959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
15-431
               

               
Cow position:
               
chr17:17133079-17133512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 216
               

               
Conread position:
               
63-380
               

               
Cow position:
               
chr17:13936345-13936018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
187, 19
               

               
Conread position:
               
84-424
               

               
Cow position:
               
chr17:26173227-26173560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
171, 42
               

               
Conread position:
               
272-430
               

               
Cow position:
               
chr17:40282019-40282179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
285-430
               

               
Cow position:
               
chr17:4676444-4676596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr18:32164988-32164583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 189
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr18:49782334-49781893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr18:24452752-24453138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 270
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr18:48390868-48391249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 30
               

               
Conread position:
               
3-405
               

               
Cow position:
               
chr18:54167702-54167298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr18:14479032-14479459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr18:48529059-48529501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 298
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr18:14128329-14127944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 69
               

               
Conread position:
               
14-424
               

               
Cow position:
               
chr18:28210176-28209768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
62-383
               

               
Cow position:
               
chr18:36511643-36511976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
178, 227
               

               
Conread position:
               
62-404
               

               
Cow position:
               
chr18:43129092-43129454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
82-428
               

               
Cow position:
               
chr18:17670928-17670579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
155, 104
               

               
Conread position:
               
90-430
               

               
Cow position:
               
chr18:30232501-30232166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 89
               

               
Conread position:
               
111-383
               

               
Cow position:
               
chr18:23688230-23688514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
136-428
               

               
Cow position:
               
chr18:44403923-44404220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
156-432
               

               
Cow position:
               
chr18:15688137-15688416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
268-421
               

               
Cow position:
               
chr18:14779305-14779150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
279-424
               

               
Cow position:
               
chr18:38342276-38342128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
295-430
               

               
Cow position:
               
chr18:36188138-36188001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr19:16478915-16478519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 49
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr19:33944517-33944914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 188
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr19:28369486-28369891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr19:37653128-37653577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 50
               

               
Conread position:
               
6-430
               

               
Cow position:
               
chr19:35981726-35982169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 110
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chr19:39603500-39603072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
61-429
               

               
Cow position:
               
chr19:5716563-5716198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
66-430
               

               
Cow position:
               
chr19:4599056-4599414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
179, 85
               

               
Conread position:
               
80-430
               

               
Cow position:
               
chr19:39725832-39726190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 127
               

               
Conread position:
               
103-366
               

               
Cow position:
               
chr19:36149950-36150216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
147, 47
               

               
Conread position:
               
183-422
               

               
Cow position:
               
chr19:27034681-27034435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr2:6965320-6965718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 189
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr2:25742872-25742493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 85
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr2:2096411-2096016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 294
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr2:4725367-4725754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr2:54715838-54716226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
2-388
               

               
Cow position:
               
chr2:20917774-20917378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr2:46255898-46256336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 298
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr2:33869125-33869590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 311
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr2:43526448-43526011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr2:46272819-46272381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 124
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr2:3668456-3668852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr2:4451651-4451258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
3-402
               

               
Cow position:
               
chr2:57937793-57938206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
3-413
               

               
Cow position:
               
chr2:1957315-1957729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr2:62675611-62675184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 300
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr2:15750694-15751127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 28
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr2:35358407-35358832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr2:64766494-64766083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 49
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr2:3769065-3768626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr2:33584402-33583999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
5-386
               

               
Cow position:
               
chr2:67977605-67977214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
9-364
               

               
Cow position:
               
chr2:40539925-40540294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 175
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chr2:2205418-2205010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
17-428
               

               
Cow position:
               
chr2:34152574-34152981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
22-351
               

               
Cow position:
               
chr2:5296686-5297019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
32-430
               

               
Cow position:
               
chr2:62039600-62039199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
35-425
               

               
Cow position:
               
chr2:30923893-30924302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 185
               

               
Conread position:
               
65-351
               

               
Cow position:
               
chr2:45493970-45493688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
65-428
               

               
Cow position:
               
chr2:31456199-31456571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
183, 41
               

               
Conread position:
               
68-368
               

               
Cow position:
               
chr2:4400665-4400354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
109, 117
               

               
Conread position:
               
70-351
               

               
Cow position:
               
chr2:42516570-42516287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
180, 66
               

               
Conread position:
               
71-413
               

               
Cow position:
               
chr2:41161725-41162080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 206
               

               
Conread position:
               
83-357
               

               
Cow position:
               
chr2:4224560-4224839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
165, 48
               

               
Conread position:
               
96-383
               

               
Cow position:
               
chr2:43209633-43209931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 193
               

               
Conread position:
               
107-369
               

               
Cow position:
               
chr2:56054255-56054525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
107-404
               

               
Cow position:
               
chr2:10196777-10196473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
108-430
               

               
Cow position:
               
chr2:13489342-13489665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 98
               

               
Conread position:
               
165-431
               

               
Cow position:
               
chr2:26909338-26909603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
172-431
               

               
Cow position:
               
chr2:39919084-39918816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
264-430
               

               
Cow position:
               
chr2:17826358-17826531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
265-430
               

               
Cow position:
               
chr2:12049175-12049343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
266-430
               

               
Cow position:
               
chr2:16414788-16414956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
267-430
               

               
Cow position:
               
chr2:8735024-8734856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
271-428
               

               
Cow position:
               
chr2:26873290-26873453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
272-425
               

               
Cow position:
               
chr2:11705321-11705480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr20:19425107-19425496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr20:36418803-36418380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr20:25331234-25330797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr20:35131924-35132315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr20:5538096-5538483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 252
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr20:6136075-6135680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 186
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr20:15241095-15240724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
61, 168
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr20:27876396-27876797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr20:28034941-28034550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
3-423
               

               
Cow position:
               
chr20:13816545-13816976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr20:28140665-28141110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
5-383
               

               
Cow position:
               
chr20:15090459-15090061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
73-430
               

               
Cow position:
               
chr20:18608280-18608646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 18
               

               
Conread position:
               
82-369
               

               
Cow position:
               
chr20:13575706-13575418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
107-429
               

               
Cow position:
               
chr20:10685762-10686089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 118
               

               
Conread position:
               
115-423
               

               
Cow position:
               
chr20:13025297-13024975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
123, 98
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr21:13162461-13162848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 179
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr21:35576579-35576190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr21:1686152-1685767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr21:4813315-4812917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 189
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr21:28915947-28915554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 287
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr21:27148528-27148125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr21:6622848-6623239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 197
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr21:30193537-30193089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr21:45790137-45790575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 141
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr21:22943842-22944279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr21:30857991-30858436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr21:38907211-38907575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr21:44762937-44762566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr21:4738674-4739105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 112
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr21:24083331-24082890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 117
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr21:44262230-44262675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
7, 300
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr21:24949142-24949502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr21:23549228-23548793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
69, 182
               

               
Conread position:
               
5-383
               

               
Cow position:
               
chr21:149176-149568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
22-376
               

               
Cow position:
               
chr21:37374258-37374622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 125
               

               
Conread position:
               
64-430
               

               
Cow position:
               
chr21:26830375-26830742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
189, 118
               

               
Conread position:
               
100-424
               

               
Cow position:
               
chr21:27262825-27263152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
148, 21
               

               
Conread position:
               
266-428
               

               
Cow position:
               
chr21:29665671-29665503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr22:41946857-41946468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 237
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr22:21957019-21957462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr22:4227385-4227017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr22:539986-540382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr22:39465690-39465293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr22:42994025-42994421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr22:13209240-13209651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr22:36356915-36357355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr22:26105284-26104906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
6-430
               

               
Cow position:
               
chr22:13248682-13249118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 122
               

               
Conread position:
               
8-430
               

               
Cow position:
               
chr22:14509263-14508832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
22-381
               

               
Cow position:
               
chr22:33799142-33798777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
23-430
               

               
Cow position:
               
chr22:28043189-28043612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 38
               

               
Conread position:
               
65-424
               

               
Cow position:
               
chr22:11970452-11970097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 157
               

               
Conread position:
               
71-428
               

               
Cow position:
               
chr22:13545791-13545430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 116
               

               
Conread position:
               
81-428
               

               
Cow position:
               
chr22:14732101-14731741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
144-368
               

               
Cow position:
               
chr22:32812202-32811978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
255-430
               

               
Cow position:
               
chr22:22322333-22322508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr23:26307880-26308297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr23:30634750-30634353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr23:4265771-4265372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr23:15039465-15039031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 152
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr23:31276344-31276789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 124
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr23:38583783-38584206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
4-405
               

               
Cow position:
               
chr23:16611950-16611543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 66
               

               
Conread position:
               
4-428
               

               
Cow position:
               
chr23:33575018-33574582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
81-430
               

               
Cow position:
               
chr23:40372428-40372064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 215
               

               
Conread position:
               
101-414
               

               
Cow position:
               
chr23:38027998-38027674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
134-365
               

               
Cow position:
               
chr23:16999427-16999667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
80, 66
               

               
Conread position:
               
151-432
               

               
Cow position:
               
chr23:6442022-6441736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
98, 139
               

               
Conread position:
               
182-428
               

               
Cow position:
               
chr23:21277605-21277346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
187-429
               

               
Cow position:
               
chr23:26683975-26684231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
227-428
               

               
Cow position:
               
chr23:34469326-34469119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr24:25648128-25647705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr24:15934872-15935314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr24:39680451-39680878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr24:14194911-14194530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 295
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr24:17764662-17764216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 297
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr24:37318604-37318170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 124
               

               
Conread position:
               
6-405
               

               
Cow position:
               
chr24:26274671-26274273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
65-430
               

               
Cow position:
               
chr24:42938954-42938573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
71-381
               

               
Cow position:
               
chr24:4785698-4786024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 155
               

               
Conread position:
               
81-430
               

               
Cow position:
               
chr24:17998349-17998714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 105
               

               
Conread position:
               
89-405
               

               
Cow position:
               
chr24:33575291-33575611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
100-418
               

               
Cow position:
               
chr24:37081704-37081381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
114-428
               

               
Cow position:
               
chr24:7576768-7576438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
130-367
               

               
Cow position:
               
chr24:31648926-31648676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
133-383
               

               
Cow position:
               
chr24:40259042-40259304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
104, 164
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr25:21146896-21147326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr25:22431390-22431831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr25:13942094-13941685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr25:35571455-35571850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 186
               

               
Conread position:
               
16-430
               

               
Cow position:
               
chr25:23773594-23773169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 102
               

               
Conread position:
               
63-350
               

               
Cow position:
               
chr25:17561747-17562042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
92, 80
               

               
Conread position:
               
81-432
               

               
Cow position:
               
chr25:24459986-24459615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
84, 156
               

               
Conread position:
               
101-427
               

               
Cow position:
               
chr25:9646702-9647036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
107-430
               

               
Cow position:
               
chr25:24637400-24637059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
136, 188
               

               
Conread position:
               
113-383
               

               
Cow position:
               
chr25:18473958-18474236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
126-428
               

               
Cow position:
               
chr25:21071096-21070777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
131-413
               

               
Cow position:
               
chr25:18264964-18265257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
140-430
               

               
Cow position:
               
chr25:21903227-21903531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
272-423
               

               
Cow position:
               
chr25:30810847-30811003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr26:1620541-1620942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 187
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr26:14365334-14364941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
2-380
               

               
Cow position:
               
chr26:21012024-21012404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr26:13183201-13183582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr26:17429585-17429188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 291
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr26:25341028-25340605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr26:33950478-33950033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
5-358
               

               
Cow position:
               
chr26:18035796-18036154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 166
               

               
Conread position:
               
87-383
               

               
Cow position:
               
chr26:17329496-17329800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr26:10011148-10011438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
108, 88
               

               
Conread position:
               
168-404
               

               
Cow position:
               
chr26:5766973-5767197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
141, 74
               

               
Conread position:
               
186-430
               

               
Cow position:
               
chr26:16508158-16508403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
308-430
               

               
Cow position:
               
chr26:6082915-6082787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr27:31268073-31268475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr27:17567947-17568391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr27:25965112-25964668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr27:2000690-2001087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr27:27501077-27501501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr27:1536029-1536462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
6-430
               

               
Cow position:
               
chr27:16427523-16427952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 52
               

               
Conread position:
               
21-380
               

               
Cow position:
               
chr27:8726446-8726816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
63-362
               

               
Cow position:
               
chr27:6030684-6030987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
179, 21
               

               
Conread position:
               
122-383
               

               
Cow position:
               
chr27:19932593-19932324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
129-414
               

               
Cow position:
               
chr27:18473232-18473512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
144-381
               

               
Cow position:
               
chr27:12277102-12277350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
92, 151
               

               
Conread position:
               
159-430
               

               
Cow position:
               
chr27:8429008-8429295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 243
               

               
Conread position:
               
184-383
               

               
Cow position:
               
chr27:19975442-19975654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 117
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr28:26563083-26563437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
240, 67
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr28:32786533-32786141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr28:1197004-1197437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 309
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr28:25827223-25826809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 128
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr28:10458206-10457745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
44, 179
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr28:12997575-12998015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr28:24302454-24302027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 148
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr28:24620951-24620526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr28:29823079-29823459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr28:33639461-33639856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-389
               

               
Cow position:
               
chr28:18517253-18516852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr28:10576125-10575689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 156
               

               
Conread position:
               
4-428
               

               
Cow position:
               
chr28:23915973-23916413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 108
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr28:27030419-27029989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
5-376
               

               
Cow position:
               
chr28:4213786-4214173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
5-428
               

               
Cow position:
               
chr28:23619861-23620298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
63-430
               

               
Cow position:
               
chr28:22200922-22201292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
65-366
               

               
Cow position:
               
chr28:8965925-8965618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
55, 170
               

               
Conread position:
               
68-430
               

               
Cow position:
               
chr28:14229992-14229634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr28:22580012-22580321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
187, 44
               

               
Conread position:
               
118-351
               

               
Cow position:
               
chr28:18145690-18145453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 95
               

               
Conread position:
               
130-430
               

               
Cow position:
               
chr28:11256862-11256549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
264-430
               

               
Cow position:
               
chr28:4376248-4376079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
266-430
               

               
Cow position:
               
chr28:17209992-17209825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr29:7812335-7811939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr29:39076857-39076460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 292
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr29:21267511-21267905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
246, 45
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr29:29616241-29615798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 114
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr29:24806318-24806714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr29:34794998-34794604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
7-404
               

               
Cow position:
               
chr29:8511362-8511763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 202
               

               
Conread position:
               
24-358
               

               
Cow position:
               
chr29:29600292-29599952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
42, 124
               

               
Conread position:
               
62-414
               

               
Cow position:
               
chr29:21535982-21535630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
174, 112
               

               
Conread position:
               
62-428
               

               
Cow position:
               
chr29:5635272-5635643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
71-351
               

               
Cow position:
               
chr29:5340154-5339866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
87-414
               

               
Cow position:
               
chr29:34331478-34331137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
161, 195
               

               
Conread position:
               
89-383
               

               
Cow position:
               
chr29:7665046-7664740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
147, 128
               

               
Conread position:
               
103-424
               

               
Cow position:
               
chr29:27310685-27310352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 193
               

               
Conread position:
               
127-428
               

               
Cow position:
               
chr29:15942035-15941719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
114, 155
               

               
Conread position:
               
147-422
               

               
Cow position:
               
chr29:36404231-36404508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
12, 150
               

               
Conread position:
               
178-430
               

               
Cow position:
               
chr29:4260219-4260478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 111
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr29:253957-254190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
2-358
               

               
Cow position:
               
chr3:11182172-11181814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
2-365
               

               
Cow position:
               
chr3:13466581-13466215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 28
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr3:66651551-66651168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr3:49335976-49336400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr3:54568803-54569242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 298
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr3:58952937-58953378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr3:48845782-48846163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr3:3837809-3837427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr3:16225657-16226048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr3:29129873-29130267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr3:37971820-37972207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr3:47078838-47078440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr3:49605663-49605269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr3:65177786-65178182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-403
               

               
Cow position:
               
chr3:39555808-39555395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr3:18353580-18353177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr3:72602984-72603407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr3:48096304-48095877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr3:75165314-75164849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 230
               

               
Conread position:
               
5-383
               

               
Cow position:
               
chr3:65988697-65989093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
57, 212
               

               
Conread position:
               
5-430
               

               
Cow position:
               
chr3:12253826-12254267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
16-381
               

               
Cow position:
               
chr3:50112231-50111855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 6
               

               
Conread position:
               
35-376
               

               
Cow position:
               
chr3:28093944-28094302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 156
               

               
Conread position:
               
63-408
               

               
Cow position:
               
chr3:24530543-24530900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 231
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr3:42846195-42846517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
184, 143
               

               
Conread position:
               
65-352
               

               
Cow position:
               
chr3:22512159-22512451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
176, 143
               

               
Conread position:
               
65-383
               

               
Cow position:
               
chr3:73636724-73637053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
112, 120
               

               
Conread position:
               
76-428
               

               
Cow position:
               
chr3:72105808-72105443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 223
               

               
Conread position:
               
86-409
               

               
Cow position:
               
chr3:45311657-45311991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
111-429
               

               
Cow position:
               
chr3:22868077-22867746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 29
               

               
Conread position:
               
128-430
               

               
Cow position:
               
chr3:38496697-38497016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
128-430
               

               
Cow position:
               
chr3:54777840-54778157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr3:37021469-37021232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
163-404
               

               
Cow position:
               
chr3:46136133-46135879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 133
               

               
Conread position:
               
242-428
               

               
Cow position:
               
chr3:55894987-55895176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 5
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr4:9105036-9105474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr4:61952065-61952439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr4:20242736-20243134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 292
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr4:60625943-60625519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 182
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr4:45654596-45654144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
3-401
               

               
Cow position:
               
chr4:47749893-47750324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr4:54147827-54147390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 290
               

               
Conread position:
               
5-404
               

               
Cow position:
               
chr4:39840301-39840705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
14-432
               

               
Cow position:
               
chr4:14736648-14737070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 45
               

               
Conread position:
               
39-430
               

               
Cow position:
               
chr4:1353306-1352914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
63-428
               

               
Cow position:
               
chr4:62222802-62223169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
65-428
               

               
Cow position:
               
chr4:43236447-43236073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
194, 29
               

               
Conread position:
               
67-430
               

               
Cow position:
               
chr4:26911431-26911809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 137
               

               
Conread position:
               
71-382
               

               
Cow position:
               
chr4:38909164-38909477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 187
               

               
Conread position:
               
74-429
               

               
Cow position:
               
chr4:66900285-66900648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 154
               

               
Conread position:
               
82-429
               

               
Cow position:
               
chr4:44647085-44646721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 216
               

               
Conread position:
               
101-430
               

               
Cow position:
               
chr4:42588922-42588586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 113
               

               
Conread position:
               
104-406
               

               
Cow position:
               
chr4:16967593-16967280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 206
               

               
Conread position:
               
111-430
               

               
Cow position:
               
chr4:3971083-3971416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
79, 85
               

               
Conread position:
               
136-383
               

               
Cow position:
               
chr4:29034348-29034592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
177, 86
               

               
Conread position:
               
171-404
               

               
Cow position:
               
chr4:5574939-5575186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
181-403
               

               
Cow position:
               
chr4:9836946-9836718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
195-404
               

               
Cow position:
               
chr4:5914106-5914326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
266-430
               

               
Cow position:
               
chr4:21056112-21056280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr5:26057811-26058239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr5:52605941-52605499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr5:60446254-60445908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr5:14782525-14782156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
246, 45
               

               
Conread position:
               
2-411
               

               
Cow position:
               
chr5:25901785-25901367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 40
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr5:18883907-18883479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr5:1339241-1338857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 298
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr5:10542989-10542564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 187
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:6189580-6190013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr5:67654012-67654452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr5:59770729-59771176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 5
               

               
Conread position:
               
4-404
               

               
Cow position:
               
chr5:41468271-41468662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 180
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr5:48534543-48534928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
11-408
               

               
Cow position:
               
chr5:63312828-63312415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 283
               

               
Conread position:
               
11-430
               

               
Cow position:
               
chr5:11956789-11956367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
14-358
               

               
Cow position:
               
chr5:21221121-21220779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
15-416
               

               
Cow position:
               
chr5:37424419-37424839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 182
               

               
Conread position:
               
22-430
               

               
Cow position:
               
chr5:22857918-22857505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 23
               

               
Conread position:
               
25-428
               

               
Cow position:
               
chr5:62160214-62159799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
39-383
               

               
Cow position:
               
chr5:15761652-15761292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr5:18119229-18118897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
114, 122
               

               
Conread position:
               
81-414
               

               
Cow position:
               
chr5:70401649-70401990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
101-430
               

               
Cow position:
               
chr5:41954501-41954166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 78
               

               
Conread position:
               
115-414
               

               
Cow position:
               
chr5:23667384-23667075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
122-351
               

               
Cow position:
               
chr5:59877324-59877538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
147-347
               

               
Cow position:
               
chr5:4629600-4629807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
266-465
               

               
Cow position:
               
chr5:50264817-50264611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr6:16703913-16703526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 135
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr6:41676754-41677131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
2-376
               

               
Cow position:
               
chr6:6720801-6721180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr6:7138521-7138124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 188
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr6:10044034-10044432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr6:6165466-6165905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr6:65875461-65875081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 43
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr6:45480256-45479871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 169
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chr6:6162950-6163369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 299
               

               
Conread position:
               
42-429
               

               
Cow position:
               
chr6:58880077-58880470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
59-385
               

               
Cow position:
               
chr6:47024921-47025256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
177, 23
               

               
Conread position:
               
63-383
               

               
Cow position:
               
chr6:18571693-18571367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 227
               

               
Conread position:
               
68-425
               

               
Cow position:
               
chr6:52245403-52245767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
173, 44
               

               
Conread position:
               
94-376
               

               
Cow position:
               
chr6:1105233-1104942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
142, 74
               

               
Conread position:
               
100-388
               

               
Cow position:
               
chr6:58072582-58072878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
143, 136
               

               
Conread position:
               
106-469
               

               
Cow position:
               
chr6:49625761-49626136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
145, 159
               

               
Conread position:
               
111-404
               

               
Cow position:
               
chr6:41556268-41556567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
128, 103
               

               
Conread position:
               
128-431
               

               
Cow position:
               
chr6:15962963-15962654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
131-430
               

               
Cow position:
               
chr6:2087474-2087790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 164
               

               
Conread position:
               
131-431
               

               
Cow position:
               
chr6:16595939-16596251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
166-424
               

               
Cow position:
               
chr6:13405217-13405489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
168-381
               

               
Cow position:
               
chr6:47154403-47154627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
173-390
               

               
Cow position:
               
chr6:15181160-15181379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
192-404
               

               
Cow position:
               
chr6:26654128-26654346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
214-430
               

               
Cow position:
               
chr6:64252160-64252380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
273-424
               

               
Cow position:
               
chr6:40031156-40031313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr7:67671680-67671323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr7:44524313-44523941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr7:5305075-5304677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 292
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr7:45953590-45953984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 300
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr7:59141129-59141572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 178
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr7:50053137-50052763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr7:18856079-18856484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr7:443348-442952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr7:13530994-13530597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr7:57025151-57024756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr7:61424623-61424190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr7:52801687-52801250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr7:6929712-6929366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr7:54698736-54699122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
5-430
               

               
Cow position:
               
chr7:31867193-31867630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr7:35276538-35276179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
15-387
               

               
Cow position:
               
chr7:54187481-54187098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 170
               

               
Conread position:
               
17-408
               

               
Cow position:
               
chr7:63955114-63954721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
21-430
               

               
Cow position:
               
chr7:31447499-31447074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
63-439
               

               
Cow position:
               
chr7:14865250-14865638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
81-430
               

               
Cow position:
               
chr7:23682596-23682236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
109-368
               

               
Cow position:
               
chr7:18963729-18963988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
113, 137
               

               
Conread position:
               
127-358
               

               
Cow position:
               
chr7:65455687-65455448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
124, 169
               

               
Conread position:
               
127-428
               

               
Cow position:
               
chr7:48018984-48019292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 183
               

               
Conread position:
               
128-375
               

               
Cow position:
               
chr7:20246061-20246319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr7:19264581-19264318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
120, 78
               

               
Conread position:
               
147-428
               

               
Cow position:
               
chr7:6534332-6534038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
185-376
               

               
Cow position:
               
chr7:2159044-2158847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 104
               

               
Conread position:
               
266-428
               

               
Cow position:
               
chr7:42814026-42814191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
276-430
               

               
Cow position:
               
chr7:58643697-58643859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr8:42153059-42152693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr8:15410123-15410516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
2-358
               

               
Cow position:
               
chr8:12150399-12150769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 299
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr8:24913201-24912804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 292
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr8:33854929-33855309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr8:21252336-21252739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr8:21234103-21234557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr8:8523917-8524309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr8:25773541-25773148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chr8:27562053-27561660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr8:41950283-41950699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr8:8009486-8009928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
4-423
               

               
Cow position:
               
chr8:13696903-13696477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 102
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chr8:34110829-34111270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
5-383
               

               
Cow position:
               
chr8:60064200-60064593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 185
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr8:16758717-16758287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 122
               

               
Conread position:
               
7-364
               

               
Cow position:
               
chr8:56481665-56481299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
25-423
               

               
Cow position:
               
chr8:13558378-13558802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
126-404
               

               
Cow position:
               
chr8:25678317-25678019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
50, 176
               

               
Conread position:
               
177-382
               

               
Cow position:
               
chr8:19256592-19256378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
267-383
               

               
Cow position:
               
chr8:8532185-8532066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr9:4647886-4647534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr9:28785090-28785475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 298
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr9:17301384-17300986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 190
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr9:6886340-6886739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
71, 192
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr9:11504732-11505170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr9:8952289-8951838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 296
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr9:2681324-2681663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
245, 48
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr9:1062946-1062550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chr9:12250742-12251123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 147
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr9:5609011-5608573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
3-428
               

               
Cow position:
               
chr9:29765060-29765484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr9:64026060-64025686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
8-386
               

               
Cow position:
               
chr9:62130788-62131187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 137
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr9:9198858-9199289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
10-428
               

               
Cow position:
               
chr9:26280607-26281036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 11
               

               
Conread position:
               
11-384
               

               
Cow position:
               
chr9:31093161-31092777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
57-358
               

               
Cow position:
               
chr9:47110082-47110380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
191, 13
               

               
Conread position:
               
82-371
               

               
Cow position:
               
chr9:3217500-3217200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
85-404
               

               
Cow position:
               
chr9:46152851-46152521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
154, 51
               

               
Conread position:
               
87-430
               

               
Cow position:
               
chr9:10110840-10111185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
93-410
               

               
Cow position:
               
chr9:51010411-51010733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
116, 178
               

               
Conread position:
               
111-429
               

               
Cow position:
               
chr9:15986871-15987201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 138
               

               
Conread position:
               
115-383
               

               
Cow position:
               
chr9:44518803-44518524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 59
               

               
Conread position:
               
163-386
               

               
Cow position:
               
chr9:47199510-47199746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
208-430
               

               
Cow position:
               
chr9:23297947-23297711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
267-426
               

               
Cow position:
               
chr9:28702476-28702641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chrX:28519055-28518666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 115
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chrX:32064511-32064114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 188
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chrX:3082476-3082115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
3-377
               

               
Cow position:
               
chrX:8435541-8435151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:27595568-27595174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 187
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chrX:28625096-28624707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chrX:19608334-19608729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 138
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chrX:32145599-32145201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 292
               

               
Conread position:
               
3-383
               

               
Cow position:
               
chrX:37080857-37080461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 188
               

               
Conread position:
               
3-404
               

               
Cow position:
               
chrX:2382124-2382541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chrX:2184897-2185304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chrX:43790153-43789721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
4-430
               

               
Cow position:
               
chrX:4300282-4299835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 261
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:15260956-15260580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 185
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chrX:3581597-3582021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
15-414
               

               
Cow position:
               
chrX:9067740-9068150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 172
               

               
Conread position:
               
62-383
               

               
Cow position:
               
chrX:5375555-5375223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 226
               

               
Conread position:
               
64-402
               

               
Cow position:
               
chrX:8400824-8400476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 234
               

               
Conread position:
               
65-366
               

               
Cow position:
               
chrX:21781060-21781368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
160, 80
               

               
Conread position:
               
81-428
               

               
Cow position:
               
chrX:25282754-25282392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 216
               

               
Conread position:
               
83-428
               

               
Cow position:
               
chrX:20999530-20999167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 332
               

               
Conread position:
               
84-383
               

               
Cow position:
               
chrX:21685352-21685673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 219
               

               
Conread position:
               
87-428
               

               
Cow position:
               
chrX:6279854-6279501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
87-430
               

               
Cow position:
               
chrX:18247104-18247457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
161, 27
               

               
Conread position:
               
90-409
               

               
Cow position:
               
chrX:21818699-21818377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
92-368
               

               
Cow position:
               
chrX:13912192-13911906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
108-424
               

               
Cow position:
               
chrX:25847590-25847914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 186
               

               
Conread position:
               
156-383
               

               
Cow position:
               
chrX:20503458-20503698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
85, 139
               

               
Conread position:
               
181-424
               

               
Cow position:
               
chrX:35028106-35028363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chrX:22140973-22140773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
258-430
               

               
Cow position:
               
chrX:24310172-24309996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
266-390
               

               
Cow position:
               
chrX:27070780-27070907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 22