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Cow genome map

           
Conread name:
           
Utr1-UTR010050E01
        

               
Conread position:
               
1-376
               

               
Cow position:
               
chr1:53396052-53396435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr1:22631485-22631096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 145
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr1:63048430-63048033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 259
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:13437938-13437531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 325
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr1:22216428-22216879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr1:22241257-22241714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 119
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr1:48827193-48827661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 275
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr1:56191623-56191158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 322
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr1:30649651-30649177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr1:52356721-52356253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr1:53366453-53366940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr1:55328869-55328402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr1:32837269-32837729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:53422427-53422939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 80
               

               
Conread position:
               
1-540
               

               
Cow position:
               
chr1:99980847-99981398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
1-622
               

               
Cow position:
               
chr1:89483655-89484285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 163
               

               
Conread position:
               
1-627
               

               
Cow position:
               
chr1:44949800-44950440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 171
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chr1:29949283-29948642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
1-651
               

               
Cow position:
               
chr1:69246366-69247017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
1-663
               

               
Cow position:
               
chr1:33548874-33548183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr1:51966814-51967472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
1-670
               

               
Cow position:
               
chr1:81926622-81925963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr1:13251990-13251289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 234
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr1:72184337-72183651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 259
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr1:82486120-82486808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 95
               

               
Conread position:
               
1-687
               

               
Cow position:
               
chr1:91596194-91595522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:3383786-3383081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:5504466-5505174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 164
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:28875617-28876333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:30532492-30531784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:57363803-57363097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:69405683-69406394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 322
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:72985986-72986694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:76618944-76618238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 236
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:85777923-85777223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:90912355-90913065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:98657412-98656717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr1:100708603-100709307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chr1:89186913-89186221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 171
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chr1:101832934-101833634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
1-693
               

               
Cow position:
               
chr1:23039638-23040335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 53
               

               
Conread position:
               
1-693
               

               
Cow position:
               
chr1:32565402-32564690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-693
               

               
Cow position:
               
chr1:79913482-79914158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
1-696
               

               
Cow position:
               
chr1:17939228-17938509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
1-696
               

               
Cow position:
               
chr1:21677337-21678044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 17
               

               
Conread position:
               
1-703
               

               
Cow position:
               
chr1:64697631-64698340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
1-706
               

               
Cow position:
               
chr1:82921624-82920881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 277
               

               
Conread position:
               
1-708
               

               
Cow position:
               
chr1:31363572-31362853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 322
               

               
Conread position:
               
1-715
               

               
Cow position:
               
chr1:51845089-51844368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr1:10029794-10029331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
25, 211
               

               
Conread position:
               
2-477
               

               
Cow position:
               
chr1:21995483-21994997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 258
               

               
Conread position:
               
2-689
               

               
Cow position:
               
chr1:79634025-79633316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr1:81839619-81839260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 75
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr1:16273097-16273485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 50
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr1:11290078-11289590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr1:70417333-70416856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 73
               

               
Conread position:
               
3-478
               

               
Cow position:
               
chr1:21353919-21353434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 38
               

               
Conread position:
               
3-478
               

               
Cow position:
               
chr1:44973837-44974316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
3-478
               

               
Cow position:
               
chr1:61537468-61536979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
3-565
               

               
Cow position:
               
chr1:99989033-99989622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-607
               

               
Cow position:
               
chr1:39546309-39546940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 324
               

               
Conread position:
               
3-621
               

               
Cow position:
               
chr1:73434798-73434155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 306
               

               
Conread position:
               
3-642
               

               
Cow position:
               
chr1:33898795-33899448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 284
               

               
Conread position:
               
3-669
               

               
Cow position:
               
chr1:41518294-41517614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
3-672
               

               
Cow position:
               
chr1:29902652-29901966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 212
               

               
Conread position:
               
3-678
               

               
Cow position:
               
chr1:40682197-40681504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-681
               

               
Cow position:
               
chr1:44702249-44701553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 258
               

               
Conread position:
               
3-681
               

               
Cow position:
               
chr1:59484328-59483633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
3-682
               

               
Cow position:
               
chr1:51876276-51875582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
3-688
               

               
Cow position:
               
chr1:56725692-56726400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 211
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:8471632-8470926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:8556218-8556922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:9261032-9261745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 614
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:17034061-17033356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:18963195-18962495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:21089977-21090701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 306
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:28713571-28714275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:30104032-30103341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 111
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:35599273-35598574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:60341578-60342292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:61332430-61331727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:70069191-70069914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 324
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:76877562-76878268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 68
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:77747273-77747979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:82910297-82909595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:86545609-86544901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:86593772-86593068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:87723152-87722451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 123
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:89493695-89492994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 333
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:91104570-91105278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr1:91901555-91902255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-692
               

               
Cow position:
               
chr1:86704677-86705390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr1:19236980-19236256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 175
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr1:67832607-67831895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 44
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr1:71560215-71559503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 266
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr1:82478516-82479224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr1:85794500-85795188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 229
               

               
Conread position:
               
3-696
               

               
Cow position:
               
chr1:61139968-61140664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 255
               

               
Conread position:
               
3-707
               

               
Cow position:
               
chr1:68430773-68431486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 211
               

               
Conread position:
               
3-709
               

               
Cow position:
               
chr1:82863344-82864077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
4-524
               

               
Cow position:
               
chr1:72113537-72114062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 178
               

               
Conread position:
               
8-605
               

               
Cow position:
               
chr1:7635833-7636447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
9-477
               

               
Cow position:
               
chr1:17010157-17009674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 317
               

               
Conread position:
               
9-478
               

               
Cow position:
               
chr1:39142621-39142151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
9-689
               

               
Cow position:
               
chr1:62927006-62927705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
9-696
               

               
Cow position:
               
chr1:10725158-10725867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 135
               

               
Conread position:
               
10-396
               

               
Cow position:
               
chr1:84442455-84442056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
10-681
               

               
Cow position:
               
chr1:3669594-3668890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 148
               

               
Conread position:
               
12-430
               

               
Cow position:
               
chr1:34726613-34726197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
14-391
               

               
Cow position:
               
chr1:79286305-79286680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
17-500
               

               
Cow position:
               
chr1:22760573-22761050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
17-678
               

               
Cow position:
               
chr1:10011764-10011091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
17-709
               

               
Cow position:
               
chr1:85294662-85295356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
18-392
               

               
Cow position:
               
chr1:57948606-57948983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 153
               

               
Conread position:
               
18-689
               

               
Cow position:
               
chr1:30306732-30306054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
18-689
               

               
Cow position:
               
chr1:33853828-33854503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 304
               

               
Conread position:
               
18-689
               

               
Cow position:
               
chr1:101011371-101010679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
20-678
               

               
Cow position:
               
chr1:44677250-44677898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
21-475
               

               
Cow position:
               
chr1:81374463-81373997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
22-689
               

               
Cow position:
               
chr1:58088990-58088319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
29-678
               

               
Cow position:
               
chr1:43511806-43511162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
29-689
               

               
Cow position:
               
chr1:7196665-7195983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
45-387
               

               
Cow position:
               
chr1:41780523-41780180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
45-485
               

               
Cow position:
               
chr1:85787878-85788321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
45-678
               

               
Cow position:
               
chr1:66504331-66504953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 47
               

               
Conread position:
               
45-725
               

               
Cow position:
               
chr1:71017767-71017066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
49-478
               

               
Cow position:
               
chr1:19337160-19337601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
53-693
               

               
Cow position:
               
chr1:61562626-61563278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
54-432
               

               
Cow position:
               
chr1:45736937-45737318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 122
               

               
Conread position:
               
54-582
               

               
Cow position:
               
chr1:31400820-31400276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 6
               

               
Conread position:
               
54-678
               

               
Cow position:
               
chr1:39250873-39250212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 6
               

               
Conread position:
               
54-688
               

               
Cow position:
               
chr1:29364991-29365641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 6
               

               
Conread position:
               
54-693
               

               
Cow position:
               
chr1:89430990-89431644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 6
               

               
Conread position:
               
54-704
               

               
Cow position:
               
chr1:67005466-67006142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 6
               

               
Conread position:
               
59-674
               

               
Cow position:
               
chr1:101126533-101125913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
59-688
               

               
Cow position:
               
chr1:57121215-57120596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 150
               

               
Conread position:
               
67-626
               

               
Cow position:
               
chr1:74303767-74303189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
68-452
               

               
Cow position:
               
chr1:92554164-92553768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 198
               

               
Conread position:
               
68-722
               

               
Cow position:
               
chr1:79113034-79113695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 254
               

               
Conread position:
               
72-710
               

               
Cow position:
               
chr1:14562606-14561952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
73-678
               

               
Cow position:
               
chr1:93112769-93112140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 249
               

               
Conread position:
               
74-696
               

               
Cow position:
               
chr1:4209311-4208670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 248
               

               
Conread position:
               
75-689
               

               
Cow position:
               
chr1:8745101-8745733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 247
               

               
Conread position:
               
80-693
               

               
Cow position:
               
chr1:61096106-61096740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 242
               

               
Conread position:
               
80-707
               

               
Cow position:
               
chr1:65611941-65612546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
85-678
               

               
Cow position:
               
chr1:41462569-41463176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
85-689
               

               
Cow position:
               
chr1:49267496-49268119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 237
               

               
Conread position:
               
93-390
               

               
Cow position:
               
chr1:74368770-74369065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
93-625
               

               
Cow position:
               
chr1:93426662-93426123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
93-707
               

               
Cow position:
               
chr1:23098279-23098895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 226
               

               
Conread position:
               
94-605
               

               
Cow position:
               
chr1:23970185-23969656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 230
               

               
Conread position:
               
94-707
               

               
Cow position:
               
chr1:97551211-97551850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
97-477
               

               
Cow position:
               
chr1:87933612-87933986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
146, 29
               

               
Conread position:
               
100-477
               

               
Cow position:
               
chr1:72309048-72308671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
100-689
               

               
Cow position:
               
chr1:82369058-82369656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 202
               

               
Conread position:
               
101-585
               

               
Cow position:
               
chr1:38409852-38410338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
103-689
               

               
Cow position:
               
chr1:63045521-63046121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 201
               

               
Conread position:
               
104-689
               

               
Cow position:
               
chr1:71794169-71794769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 214
               

               
Conread position:
               
108-689
               

               
Cow position:
               
chr1:89111474-89112068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
112-492
               

               
Cow position:
               
chr1:69352443-69352048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
119-689
               

               
Cow position:
               
chr1:29037192-29037776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 197
               

               
Conread position:
               
120-689
               

               
Cow position:
               
chr1:46613636-46613060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
123-689
               

               
Cow position:
               
chr1:73762872-73762309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
32, 175
               

               
Conread position:
               
124-401
               

               
Cow position:
               
chr1:55318984-55318710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
124-650
               

               
Cow position:
               
chr1:31724933-31724404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 191
               

               
Conread position:
               
124-689
               

               
Cow position:
               
chr1:55779528-55780107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 194
               

               
Conread position:
               
124-693
               

               
Cow position:
               
chr1:17437019-17436434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
128-693
               

               
Cow position:
               
chr1:89090881-89090296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
135-688
               

               
Cow position:
               
chr1:52336073-52335523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 180
               

               
Conread position:
               
135-693
               

               
Cow position:
               
chr1:57525952-57526517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
135-693
               

               
Cow position:
               
chr1:61203049-61203625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
136-607
               

               
Cow position:
               
chr1:97548553-97549041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
143-716
               

               
Cow position:
               
chr1:65811179-65811749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 22
               

               
Conread position:
               
144-456
               

               
Cow position:
               
chr1:64946618-64946308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
148-455
               

               
Cow position:
               
chr1:9513966-9513661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
148-689
               

               
Cow position:
               
chr1:9263425-9262869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 170
               

               
Conread position:
               
148-689
               

               
Cow position:
               
chr1:18025130-18024578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 184
               

               
Conread position:
               
165-597
               

               
Cow position:
               
chr1:79987900-79988336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
165-689
               

               
Cow position:
               
chr1:53371056-53371594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 28
               

               
Conread position:
               
166-434
               

               
Cow position:
               
chr1:40899671-40899400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
137, 112
               

               
Conread position:
               
166-582
               

               
Cow position:
               
chr1:77109422-77108996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
166-659
               

               
Cow position:
               
chr1:56745575-56746083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
166-675
               

               
Cow position:
               
chr1:102432040-102431515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 151
               

               
Conread position:
               
166-689
               

               
Cow position:
               
chr1:65389258-65389795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 151
               

               
Conread position:
               
166-689
               

               
Cow position:
               
chr1:88178557-88179094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 151
               

               
Conread position:
               
167-635
               

               
Cow position:
               
chr1:22222724-22223208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 136
               

               
Conread position:
               
168-678
               

               
Cow position:
               
chr1:22838270-22837753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
170-677
               

               
Cow position:
               
chr1:24654542-24655058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
172-390
               

               
Cow position:
               
chr1:34317066-34316852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
176-494
               

               
Cow position:
               
chr1:88532528-88532214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
218, 58
               

               
Conread position:
               
178-693
               

               
Cow position:
               
chr1:11666851-11666322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 125
               

               
Conread position:
               
178-694
               

               
Cow position:
               
chr1:46802237-46802746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 70
               

               
Conread position:
               
182-477
               

               
Cow position:
               
chr1:98617183-98617481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
207, 135
               

               
Conread position:
               
185-627
               

               
Cow position:
               
chr1:73553976-73554416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
186-689
               

               
Cow position:
               
chr1:78941510-78941010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 92
               

               
Conread position:
               
188-689
               

               
Cow position:
               
chr1:78922289-78921777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 129
               

               
Conread position:
               
190-494
               

               
Cow position:
               
chr1:51481108-51480792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
134, 127
               

               
Conread position:
               
190-542
               

               
Cow position:
               
chr1:37677433-37677066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
204, 127
               

               
Conread position:
               
200-678
               

               
Cow position:
               
chr1:76564098-76564579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
201-478
               

               
Cow position:
               
chr1:96194436-96194151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 133
               

               
Conread position:
               
203-677
               

               
Cow position:
               
chr1:23638957-23638471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
204-689
               

               
Cow position:
               
chr1:13405649-13405149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
209-609
               

               
Cow position:
               
chr1:79295582-79295976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
209-681
               

               
Cow position:
               
chr1:61747417-61746938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
211-693
               

               
Cow position:
               
chr1:32961761-32961262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
212-605
               

               
Cow position:
               
chr1:20378423-20378822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
184, 41
               

               
Conread position:
               
212-693
               

               
Cow position:
               
chr1:20847258-20846772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 36
               

               
Conread position:
               
212-693
               

               
Cow position:
               
chr1:79553244-79553737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
213-664
               

               
Cow position:
               
chr1:34684244-34684695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 90
               

               
Conread position:
               
215-456
               

               
Cow position:
               
chr1:8213481-8213724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
215-623
               

               
Cow position:
               
chr1:17949230-17949653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
172, 102
               

               
Conread position:
               
216-568
               

               
Cow position:
               
chr1:34532798-34533167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
178, 101
               

               
Conread position:
               
220-693
               

               
Cow position:
               
chr1:92873220-92873679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
186, 67
               

               
Conread position:
               
221-689
               

               
Cow position:
               
chr1:99230292-99229823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 82
               

               
Conread position:
               
225-539
               

               
Cow position:
               
chr1:6211998-6212330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
146, 92
               

               
Conread position:
               
225-677
               

               
Cow position:
               
chr1:73847721-73847277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
77, 90
               

               
Conread position:
               
225-693
               

               
Cow position:
               
chr1:91672990-91673473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 78
               

               
Conread position:
               
229-715
               

               
Cow position:
               
chr1:73642767-73643271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
165, 84
               

               
Conread position:
               
236-709
               

               
Cow position:
               
chr1:57929102-57928627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
236-722
               

               
Cow position:
               
chr1:96094895-96095398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
238-545
               

               
Cow position:
               
chr1:58514535-58514840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
158, 49
               

               
Conread position:
               
238-693
               

               
Cow position:
               
chr1:31392524-31392053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
239-710
               

               
Cow position:
               
chr1:81539719-81540198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
240-689
               

               
Cow position:
               
chr1:56645105-56644642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
156, 77
               

               
Conread position:
               
243-707
               

               
Cow position:
               
chr1:85322991-85323485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
243-723
               

               
Cow position:
               
chr1:2327155-2327630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
251-688
               

               
Cow position:
               
chr1:8827804-8828256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
253-689
               

               
Cow position:
               
chr1:20648226-20648676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
253-689
               

               
Cow position:
               
chr1:21134321-21133871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 64
               

               
Conread position:
               
254-488
               

               
Cow position:
               
chr1:29704853-29704620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 63
               

               
Conread position:
               
254-678
               

               
Cow position:
               
chr1:16798310-16797869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
254-678
               

               
Cow position:
               
chr1:22530011-22529581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 63
               

               
Conread position:
               
258-678
               

               
Cow position:
               
chr1:52172016-52171581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
264-491
               

               
Cow position:
               
chr1:30295724-30295954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
265-705
               

               
Cow position:
               
chr1:21431501-21431043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
131, 55
               

               
Conread position:
               
272-689
               

               
Cow position:
               
chr1:63341664-63341236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
281-704
               

               
Cow position:
               
chr1:79101002-79100577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
283-689
               

               
Cow position:
               
chr1:33040222-33039796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
41, 253
               

               
Conread position:
               
283-689
               

               
Cow position:
               
chr1:67001026-67001446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
286-672
               

               
Cow position:
               
chr1:52755712-52755312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
117, 29
               

               
Conread position:
               
291-708
               

               
Cow position:
               
chr1:71677233-71676807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
293-605
               

               
Cow position:
               
chr1:69212133-69211807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
301-706
               

               
Cow position:
               
chr1:86451183-86451599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 33
               

               
Conread position:
               
304-663
               

               
Cow position:
               
chr1:81001506-81001144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
304-677
               

               
Cow position:
               
chr1:39111523-39111911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
304-678
               

               
Cow position:
               
chr1:72090449-72090066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
307-693
               

               
Cow position:
               
chr1:11018284-11018676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
307-693
               

               
Cow position:
               
chr1:31351922-31351525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
307-704
               

               
Cow position:
               
chr1:19441686-19441276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
308-663
               

               
Cow position:
               
chr1:21133023-21132652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
317-657
               

               
Cow position:
               
chr1:41516181-41515831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
323-669
               

               
Cow position:
               
chr1:17292998-17292644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 174
               

               
Conread position:
               
325-693
               

               
Cow position:
               
chr1:2180979-2181362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
59, 201
               

               
Conread position:
               
333-689
               

               
Cow position:
               
chr1:18487314-18486941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
61, 200
               

               
Conread position:
               
333-689
               

               
Cow position:
               
chr1:60251563-60251190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
61, 200
               

               
Conread position:
               
337-658
               

               
Cow position:
               
chr1:51392960-51393300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 196
               

               
Conread position:
               
339-689
               

               
Cow position:
               
chr1:71976253-71976612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 244
               

               
Conread position:
               
339-689
               

               
Cow position:
               
chr1:71977764-71978123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 244
               

               
Conread position:
               
339-707
               

               
Cow position:
               
chr1:72804640-72804253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
50, 326
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr1:61340450-61340084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
54, 193
               

               
Conread position:
               
347-678
               

               
Cow position:
               
chr1:67975315-67974977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
347-688
               

               
Cow position:
               
chr1:39889016-39889374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
47, 186
               

               
Conread position:
               
347-689
               

               
Cow position:
               
chr1:48345062-48345421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 242
               

               
Conread position:
               
347-689
               

               
Cow position:
               
chr1:59203386-59203027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
40, 242
               

               
Conread position:
               
354-678
               

               
Cow position:
               
chr1:81868572-81868248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
361-689
               

               
Cow position:
               
chr1:10033401-10033747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 228
               

               
Conread position:
               
363-675
               

               
Cow position:
               
chr1:13271492-13271158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 205
               

               
Conread position:
               
368-663
               

               
Cow position:
               
chr1:30037603-30037909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 219
               

               
Conread position:
               
375-689
               

               
Cow position:
               
chr1:13438029-13438357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
21, 226
               

               
Conread position:
               
386-689
               

               
Cow position:
               
chr1:15149721-15149407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
386-689
               

               
Cow position:
               
chr1:31106471-31106157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 197
               

               
Conread position:
               
386-689
               

               
Cow position:
               
chr1:69671698-69671385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
386-689
               

               
Cow position:
               
chr1:85630258-85630572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
386-693
               

               
Cow position:
               
chr1:65735071-65734766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 189
               

               
Conread position:
               
387-678
               

               
Cow position:
               
chr1:56439488-56439186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
390-689
               

               
Cow position:
               
chr1:20527087-20527396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 192
               

               
Conread position:
               
390-689
               

               
Cow position:
               
chr1:56205884-56205574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 193
               

               
Conread position:
               
409-660
               

               
Cow position:
               
chr1:32100145-32099883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
409-689
               

               
Cow position:
               
chr1:47118904-47119193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
409-689
               

               
Cow position:
               
chr1:75402843-75403130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 116
               

               
Conread position:
               
409-693
               

               
Cow position:
               
chr1:19161916-19162209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 163
               

               
Conread position:
               
412-689
               

               
Cow position:
               
chr1:57505741-57506027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
486-689
               

               
Cow position:
               
chr1:88984411-88984215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr10:21516459-21516068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr10:50519501-50519047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 53
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr10:23171350-23171833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chr10:42635301-42635861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 80
               

               
Conread position:
               
1-585
               

               
Cow position:
               
chr10:26670220-26670828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 157
               

               
Conread position:
               
1-623
               

               
Cow position:
               
chr10:32319000-32319620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
1-638
               

               
Cow position:
               
chr10:39776453-39775795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
1-669
               

               
Cow position:
               
chr10:29107228-29106578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 52
               

               
Conread position:
               
1-676
               

               
Cow position:
               
chr10:25647346-25646642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 201
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr10:19513782-19514481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr10:48170081-48170774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr10:1380052-1380757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 173
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr10:10584680-10585387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr10:14333291-14332580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr10:39038507-39037790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 334
               

               
Conread position:
               
1-696
               

               
Cow position:
               
chr10:21450648-21449930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
1-711
               

               
Cow position:
               
chr10:49185967-49185256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
1-723
               

               
Cow position:
               
chr10:38842717-38843459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-728
               

               
Cow position:
               
chr10:21426749-21426003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 204
               

               
Conread position:
               
2-689
               

               
Cow position:
               
chr10:41140470-41139760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr10:44260275-44259819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
3-451
               

               
Cow position:
               
chr10:24756730-24757177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr10:39813839-39813350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 201
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr10:41879492-41879979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 234
               

               
Conread position:
               
3-602
               

               
Cow position:
               
chr10:33868631-33868008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 243
               

               
Conread position:
               
3-620
               

               
Cow position:
               
chr10:32008630-32009270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 322
               

               
Conread position:
               
3-641
               

               
Cow position:
               
chr10:25633285-25632623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-673
               

               
Cow position:
               
chr10:40348101-40347411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 321
               

               
Conread position:
               
3-678
               

               
Cow position:
               
chr10:19842225-19842923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 320
               

               
Conread position:
               
3-678
               

               
Cow position:
               
chr10:41569657-41570352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 309
               

               
Conread position:
               
3-681
               

               
Cow position:
               
chr10:14845819-14846509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
3-687
               

               
Cow position:
               
chr10:278797-278098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
3-688
               

               
Cow position:
               
chr10:4584626-4583933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 155
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:8681176-8681885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 309
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:22344030-22344724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 133
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:23848518-23849227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 309
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:25650865-25650160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:30688552-30689259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 322
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:30719245-30719956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:32086242-32086943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:34665208-34664508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 133
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:35824788-35824082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 202
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:39210316-39211034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:39849671-39848962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 111
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:44706155-44705449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 327
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:45647415-45648118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:47909175-47909876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr10:57554783-57554074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr10:48374891-48374179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
3-704
               

               
Cow position:
               
chr10:55026414-55027110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
3-708
               

               
Cow position:
               
chr10:58811206-58810498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 211
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr10:51212689-51213078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
6-675
               

               
Cow position:
               
chr10:41386432-41385749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
6-683
               

               
Cow position:
               
chr10:22981719-22981033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 170
               

               
Conread position:
               
8-634
               

               
Cow position:
               
chr10:22907574-22906935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 309
               

               
Conread position:
               
9-477
               

               
Cow position:
               
chr10:12669213-12669676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
9-678
               

               
Cow position:
               
chr10:15620821-15620135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
9-693
               

               
Cow position:
               
chr10:32364501-32365205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 317
               

               
Conread position:
               
17-384
               

               
Cow position:
               
chr10:54128261-54128621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
17-659
               

               
Cow position:
               
chr10:9155756-9155140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
379, 23
               

               
Conread position:
               
17-678
               

               
Cow position:
               
chr10:10685885-10686542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
17-681
               

               
Cow position:
               
chr10:24783310-24782647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
17-705
               

               
Cow position:
               
chr10:32827311-32828016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
18-477
               

               
Cow position:
               
chr10:54929404-54928913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 180
               

               
Conread position:
               
18-665
               

               
Cow position:
               
chr10:40566251-40566907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
18-681
               

               
Cow position:
               
chr10:17435861-17436524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
18-689
               

               
Cow position:
               
chr10:46173626-46172930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
18-693
               

               
Cow position:
               
chr10:42753659-42754325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 155
               

               
Conread position:
               
22-675
               

               
Cow position:
               
chr10:22104054-22104729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 238
               

               
Conread position:
               
25-659
               

               
Cow position:
               
chr10:53158192-53158848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
37-672
               

               
Cow position:
               
chr10:6541079-6541719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
44-678
               

               
Cow position:
               
chr10:58600219-58600850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
45-678
               

               
Cow position:
               
chr10:19720250-19719621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 83
               

               
Conread position:
               
45-698
               

               
Cow position:
               
chr10:24738092-24737429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
46-678
               

               
Cow position:
               
chr10:60704432-60703776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 80
               

               
Conread position:
               
48-689
               

               
Cow position:
               
chr10:26923685-26923028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 6
               

               
Conread position:
               
54-675
               

               
Cow position:
               
chr10:40698064-40697429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 6
               

               
Conread position:
               
58-689
               

               
Cow position:
               
chr10:52827016-52826368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 264
               

               
Conread position:
               
60-451
               

               
Cow position:
               
chr10:53484293-53483896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
71, 185
               

               
Conread position:
               
60-468
               

               
Cow position:
               
chr10:317748-317343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
60-689
               

               
Cow position:
               
chr10:3507530-3506880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 264
               

               
Conread position:
               
68-452
               

               
Cow position:
               
chr10:40642556-40642955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
68-585
               

               
Cow position:
               
chr10:51407904-51408430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 102
               

               
Conread position:
               
68-678
               

               
Cow position:
               
chr10:4500562-4501195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
68-715
               

               
Cow position:
               
chr10:40706145-40706781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
69-640
               

               
Cow position:
               
chr10:39077119-39077697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 113
               

               
Conread position:
               
73-633
               

               
Cow position:
               
chr10:66773770-66773188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 235
               

               
Conread position:
               
74-640
               

               
Cow position:
               
chr10:61294769-61294189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
77-459
               

               
Cow position:
               
chr10:9942356-9941991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
79-392
               

               
Cow position:
               
chr10:39308819-39308509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
80-689
               

               
Cow position:
               
chr10:2117809-2117181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 242
               

               
Conread position:
               
87-729
               

               
Cow position:
               
chr10:37489777-37489150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
93-689
               

               
Cow position:
               
chr10:20381345-20380727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 229
               

               
Conread position:
               
94-678
               

               
Cow position:
               
chr10:6002942-6002352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
103-693
               

               
Cow position:
               
chr10:36275516-36274910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 201
               

               
Conread position:
               
104-693
               

               
Cow position:
               
chr10:25755886-25756489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 218
               

               
Conread position:
               
112-698
               

               
Cow position:
               
chr10:5785570-5784969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 191
               

               
Conread position:
               
116-689
               

               
Cow position:
               
chr10:32281687-32282275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 202
               

               
Conread position:
               
120-451
               

               
Cow position:
               
chr10:20102294-20101954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
28, 200
               

               
Conread position:
               
120-650
               

               
Cow position:
               
chr10:32699344-32699888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 46
               

               
Conread position:
               
120-678
               

               
Cow position:
               
chr10:40140578-40139990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 202
               

               
Conread position:
               
124-396
               

               
Cow position:
               
chr10:60205812-60206076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
124-426
               

               
Cow position:
               
chr10:13372771-13372466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
124-661
               

               
Cow position:
               
chr10:28147354-28146808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
124-678
               

               
Cow position:
               
chr10:1721185-1720615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 194
               

               
Conread position:
               
127-678
               

               
Cow position:
               
chr10:4344470-4343919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
132-689
               

               
Cow position:
               
chr10:17959054-17959626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 172
               

               
Conread position:
               
135-472
               

               
Cow position:
               
chr10:44235736-44235398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
135-623
               

               
Cow position:
               
chr10:9734271-9733793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
139-396
               

               
Cow position:
               
chr10:22618530-22618281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
147-478
               

               
Cow position:
               
chr10:48161436-48161763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
148-655
               

               
Cow position:
               
chr10:15489533-15490051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 170
               

               
Conread position:
               
157-559
               

               
Cow position:
               
chr10:42690158-42689762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
8, 161
               

               
Conread position:
               
157-723
               

               
Cow position:
               
chr10:7858609-7858046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
161-693
               

               
Cow position:
               
chr10:42275435-42275961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
166-678
               

               
Cow position:
               
chr10:57742936-57743459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 124
               

               
Conread position:
               
168-689
               

               
Cow position:
               
chr10:21398494-21397960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 149
               

               
Conread position:
               
169-678
               

               
Cow position:
               
chr10:31738745-31739237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 127
               

               
Conread position:
               
170-678
               

               
Cow position:
               
chr10:34335769-34335245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 147
               

               
Conread position:
               
171-693
               

               
Cow position:
               
chr10:49144981-49145507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 146
               

               
Conread position:
               
173-674
               

               
Cow position:
               
chr10:10531982-10531451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
173-721
               

               
Cow position:
               
chr10:47917408-47917975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr10:56336279-56336577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 79
               

               
Conread position:
               
184-569
               

               
Cow position:
               
chr10:69936335-69935935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
212, 392
               

               
Conread position:
               
184-688
               

               
Cow position:
               
chr10:27004839-27004320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 32
               

               
Conread position:
               
186-392
               

               
Cow position:
               
chr10:13868739-13868936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
187-615
               

               
Cow position:
               
chr10:2243637-2244079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 130
               

               
Conread position:
               
187-677
               

               
Cow position:
               
chr10:8365982-8365487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 23
               

               
Conread position:
               
190-665
               

               
Cow position:
               
chr10:3527623-3528103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 115
               

               
Conread position:
               
194-678
               

               
Cow position:
               
chr10:38940873-38941370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 123
               

               
Conread position:
               
204-611
               

               
Cow position:
               
chr10:27129551-27129132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
207-633
               

               
Cow position:
               
chr10:3817037-3817476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 96
               

               
Conread position:
               
207-693
               

               
Cow position:
               
chr10:6221011-6221511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 92
               

               
Conread position:
               
209-689
               

               
Cow position:
               
chr10:22380485-22380977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 14
               

               
Conread position:
               
213-689
               

               
Cow position:
               
chr10:40375777-40376268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
218-658
               

               
Cow position:
               
chr10:46171190-46171644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 99
               

               
Conread position:
               
218-661
               

               
Cow position:
               
chr10:58859738-58859277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
56, 97
               

               
Conread position:
               
219-539
               

               
Cow position:
               
chr10:14970686-14971023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
175, 84
               

               
Conread position:
               
219-675
               

               
Cow position:
               
chr10:28604627-28605069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
224-689
               

               
Cow position:
               
chr10:1433901-1434388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
227-401
               

               
Cow position:
               
chr10:50331864-50331694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
227-689
               

               
Cow position:
               
chr10:18106351-18106825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 90
               

               
Conread position:
               
230-673
               

               
Cow position:
               
chr10:19708552-19709013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
231-625
               

               
Cow position:
               
chr10:24966676-24967085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
234-658
               

               
Cow position:
               
chr10:43847965-43848394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
239-677
               

               
Cow position:
               
chr10:11113288-11112845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
251-478
               

               
Cow position:
               
chr10:68877183-68877412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 63
               

               
Conread position:
               
251-693
               

               
Cow position:
               
chr10:38153960-38154415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
145, 66
               

               
Conread position:
               
252-714
               

               
Cow position:
               
chr10:19235452-19234995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
255-452
               

               
Cow position:
               
chr10:32393312-32393510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
256-688
               

               
Cow position:
               
chr10:21729889-21729443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
132, 61
               

               
Conread position:
               
257-675
               

               
Cow position:
               
chr10:60190867-60191287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
257-689
               

               
Cow position:
               
chr10:31022239-31021794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 60
               

               
Conread position:
               
258-619
               

               
Cow position:
               
chr10:32811386-32811756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
150, 270
               

               
Conread position:
               
259-707
               

               
Cow position:
               
chr10:45310392-45309926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
61, 190
               

               
Conread position:
               
268-689
               

               
Cow position:
               
chr10:16954637-16955049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
194, 19
               

               
Conread position:
               
270-585
               

               
Cow position:
               
chr10:35039833-35040161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
270-707
               

               
Cow position:
               
chr10:40736516-40736965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
276-689
               

               
Cow position:
               
chr10:65308199-65308626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
280-596
               

               
Cow position:
               
chr10:27134631-27134308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 37
               

               
Conread position:
               
283-630
               

               
Cow position:
               
chr10:52738698-52739061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
283-689
               

               
Cow position:
               
chr10:35442810-35443213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
113, 40
               

               
Conread position:
               
283-689
               

               
Cow position:
               
chr10:38817748-38818168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
296-536
               

               
Cow position:
               
chr10:35514587-35514832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
300-688
               

               
Cow position:
               
chr10:40400038-40400433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
303-693
               

               
Cow position:
               
chr10:22250092-22250497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
307-697
               

               
Cow position:
               
chr10:28935023-28935426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
309-693
               

               
Cow position:
               
chr10:60739589-60739984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
316-678
               

               
Cow position:
               
chr10:28040692-28040311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
316-693
               

               
Cow position:
               
chr10:19491902-19491511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
325-676
               

               
Cow position:
               
chr10:49834958-49835320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
325-678
               

               
Cow position:
               
chr10:68014540-68014902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
62, 223
               

               
Conread position:
               
334-661
               

               
Cow position:
               
chr10:25879069-25879417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
334-689
               

               
Cow position:
               
chr10:16647420-16647049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 199
               

               
Conread position:
               
337-650
               

               
Cow position:
               
chr10:34650864-34651191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 235
               

               
Conread position:
               
338-660
               

               
Cow position:
               
chr10:48390863-48390526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 37
               

               
Conread position:
               
341-690
               

               
Cow position:
               
chr10:17492517-17492147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
6, 252
               

               
Conread position:
               
346-742
               

               
Cow position:
               
chr10:32560016-32560438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
43, 246
               

               
Conread position:
               
349-681
               

               
Cow position:
               
chr10:17544116-17543763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
361-706
               

               
Cow position:
               
chr10:27120993-27120628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 228
               

               
Conread position:
               
363-689
               

               
Cow position:
               
chr10:36879538-36879195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
31, 170
               

               
Conread position:
               
367-672
               

               
Cow position:
               
chr10:66142406-66142730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
367-689
               

               
Cow position:
               
chr10:1377571-1377233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
368-668
               

               
Cow position:
               
chr10:34433011-34433325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
374-673
               

               
Cow position:
               
chr10:46194413-46194720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
386-689
               

               
Cow position:
               
chr10:37139357-37139043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 188
               

               
Conread position:
               
386-689
               

               
Cow position:
               
chr10:62775816-62776130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
386-693
               

               
Cow position:
               
chr10:48241610-48241291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
427-689
               

               
Cow position:
               
chr10:3181564-3181295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
430-678
               

               
Cow position:
               
chr10:19390599-19390340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 151
               

               
Conread position:
               
493-669
               

               
Cow position:
               
chr10:37914356-37914181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr11:36764862-36765252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr11:37070159-37069747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 183
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr11:15720539-15720043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 255
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr11:74194041-74193566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
1-494
               

               
Cow position:
               
chr11:30254418-30254924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 312
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr11:23124739-23124153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 118
               

               
Conread position:
               
1-602
               

               
Cow position:
               
chr11:42310258-42309656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr11:35332615-35331966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:28693782-28693080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 205
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:38833284-38832587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 291
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:39483490-39484172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:66731345-66732020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
1-688
               

               
Cow position:
               
chr11:47973663-47972954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:9080356-9079664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 192
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:21897497-21896796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:32078591-32077883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:40403573-40402855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 313
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:53429833-53429123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:67296819-67296108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 324
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chr11:27834558-27833855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chr11:33000080-33000780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 202
               

               
Conread position:
               
1-693
               

               
Cow position:
               
chr11:35862439-35861748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 325
               

               
Conread position:
               
1-695
               

               
Cow position:
               
chr11:76371866-76371161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
1-707
               

               
Cow position:
               
chr11:26654806-26655545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
1-711
               

               
Cow position:
               
chr11:48740720-48740015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
2-689
               

               
Cow position:
               
chr11:2533788-2534498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 324
               

               
Conread position:
               
2-692
               

               
Cow position:
               
chr11:52563846-52564549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
3-401
               

               
Cow position:
               
chr11:31864808-31865212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr11:30105002-30104513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               
3-477UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:39585531-39585043 (view  custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 309
               
3-478UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:73467224-73466741 (view  custom track)

               
               
               
Alignm length:
493

               
               
               
Alignm identity:
340

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
32, 115
3-565UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:47737351-47736767 (view  custom track)

               
               
               
Alignm length:
589

               
               
               
Alignm identity:
401

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
53, 58

               
               
               Conread position:3-620
               
               
               Cow position:chr11:15987447-15988081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-649
               
               
               Cow position:chr11:56479738-56479074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 309

               
               
               Conread position:3-663
               
               
               Cow position:chr11:84966308-84966989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-678
               
               
               Cow position:chr11:17548350-17549048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 214

               
               
               Conread position:3-678
               
               
               Cow position:chr11:57625982-57625299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:3-689
               
               
               Cow position:chr11:10699556-10698847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr11:17105491-17104791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:3-689
               
               
               Cow position:chr11:32454252-32454953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:3-689
               
               
               Cow position:chr11:58135909-58136616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:3-689
               
               
               Cow position:chr11:63391285-63390580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr11:67452845-67453554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr11:7121773-7121059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr11:8444795-8444083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 321

               
               
               Conread position:3-693
               
               
               Cow position:chr11:19061884-19061170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr11:30201499-30200789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 294

               
               
               Conread position:3-693
               
               
               Cow position:chr11:38796025-38796710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:3-693
               
               
               Cow position:chr11:61398419-61397717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr11:73799509-73798794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:6-450
               
               
               Cow position:chr11:55484444-55484900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 57

               
               
               Conread position:9-402
               
               
               Cow position:chr11:38600739-38600342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 315

               
               
               Conread position:9-478
               
               
               Cow position:chr11:23624018-23623536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 301

               
               
               Conread position:9-689
               
               
               Cow position:chr11:28124711-28125414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:9-689
               
               
               Cow position:chr11:28227581-28226879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 315

               
               
               Conread position:9-693
               
               
               Cow position:chr11:32478616-32477908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 317

               
               
               Conread position:9-715
               
               
               Cow position:chr11:21476817-21477533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 198

               
               
               Conread position:17-428
               
               
               Cow position:chr11:35255259-35254848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:17-492
               
               
               Cow position:chr11:16120226-16119747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:17-644
               
               
               Cow position:chr11:76277053-76276414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:17-649
               
               
               Cow position:chr11:66568262-66568908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:17-689
               
               
               Cow position:chr11:39489664-39490296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:431
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:18-501
               
               
               Cow position:chr11:27937614-27938103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:18-547
               
               
               Cow position:chr11:74346610-74347158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 309

               
               
               Conread position:18-678
               
               
               Cow position:chr11:49172295-49171608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 176

               
               
               Conread position:18-689
               
               
               Cow position:chr11:18147323-18146647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:20-595
               
               
               Cow position:chr11:66946107-66945528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:26-681
               
               
               Cow position:chr11:45652693-45652020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 265

               
               
               Conread position:27-672
               
               
               Cow position:chr11:69167475-69168134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:29-501
               
               
               Cow position:chr11:15674854-15674394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:33-669
               
               
               Cow position:chr11:53308679-53308016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 300

               
               
               Conread position:40-693
               
               
               Cow position:chr11:9249004-9248345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:42-449
               
               
               Cow position:chr11:4192876-4193289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:42-675
               
               
               Cow position:chr11:26562064-26561433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 15

               
               
               Conread position:44-559
               
               
               Cow position:chr11:1506975-1506472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:344
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 71

               
               
               Conread position:45-478
               
               
               Cow position:chr11:46767204-46767637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:45-678
               
               
               Cow position:chr11:28393129-28393767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:45-678
               
               
               Cow position:chr11:42209791-42210427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:45-689
               
               
               Cow position:chr11:29663813-29663151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 280

               
               
               Conread position:45-689
               
               
               Cow position:chr11:75403258-75402608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:45-693
               
               
               Cow position:chr11:26052281-26051618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 214

               
               
               Conread position:45-693
               
               
               Cow position:chr11:58050685-58050021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:45-707
               
               
               Cow position:chr11:45549391-45550044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:48-678
               
               
               Cow position:chr11:11591221-11591867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 260

               
               
               Conread position:50-728
               
               
               Cow position:chr11:72590201-72590877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:425
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:54-607
               
               
               Cow position:chr11:17834319-17833759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 6

               
               
               Conread position:54-677
               
               
               Cow position:chr11:19429098-19428445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:429
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):6, 50

               
               
               Conread position:59-480
               
               
               Cow position:chr11:70811405-70811826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:60-594
               
               
               Cow position:chr11:2540683-2541242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:366
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:60-678
               
               
               Cow position:chr11:60824059-60824664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:408
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:61-492
               
               
               Cow position:chr11:22304436-22303987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 143

               
               
               Conread position:62-605
               
               
               Cow position:chr11:32270901-32270346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:392
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):103, 5

               
               
               Conread position:64-690
               
               
               Cow position:chr11:44232700-44233334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:67-639
               
               
               Cow position:chr11:58819650-58820235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:67-675
               
               
               Cow position:chr11:43992524-43991895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:411
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:68-473
               
               
               Cow position:chr11:37293827-37293416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 69

               
               
               Conread position:68-684
               
               
               Cow position:chr11:77747777-77747173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:409
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:68-689
               
               
               Cow position:chr11:3075915-3076534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:72-678
               
               
               Cow position:chr11:12317808-12317180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 251

               
               
               Conread position:73-403
               
               
               Cow position:chr11:67243706-67243392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):229, 55

               
               
               Conread position:73-647
               
               
               Cow position:chr11:4059809-4059242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:74-716
               
               
               Cow position:chr11:85657726-85658345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:414
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:79-494
               
               
               Cow position:chr11:15652415-15652827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 66

               
               
               Conread position:81-689
               
               
               Cow position:chr11:74928073-74928702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 163

               
               
               Conread position:83-675
               
               
               Cow position:chr11:27056411-27055828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:401
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:83-678
               
               
               Cow position:chr11:20494814-20494216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:86-463
               
               
               Cow position:chr11:56947226-56946856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:89-689
               
               
               Cow position:chr11:25564037-25564652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:92-524
               
               
               Cow position:chr11:3790074-3790527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:93-483
               
               
               Cow position:chr11:7488854-7489246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:96-678
               
               
               Cow position:chr11:72365475-72366078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:101-689
               
               
               Cow position:chr11:3495343-3495942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:101-689
               
               
               Cow position:chr11:15835218-15835811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:119-665
               
               
               Cow position:chr11:44515460-44514896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:119-689
               
               
               Cow position:chr11:44516856-44516270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:119-689
               
               
               Cow position:chr11:50834444-50833860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:120-693
               
               
               Cow position:chr11:50511357-50510768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:124-395
               
               
               Cow position:chr11:25183384-25183650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:124-439
               
               
               Cow position:chr11:49484554-49484871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:124-620
               
               
               Cow position:chr11:82146318-82145826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:124-678
               
               
               Cow position:chr11:3682518-3681952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:125-395
               
               
               Cow position:chr11:7482752-7483014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):159, 40

               
               
               Conread position:131-437
               
               
               Cow position:chr11:9387466-9387159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):258, 186

               
               
               Conread position:135-471
               
               
               Cow position:chr11:13087988-13088330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:135-478
               
               
               Cow position:chr11:17280251-17279904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):6, 83

               
               
               Conread position:138-677
               
               
               Cow position:chr11:13568228-13567687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:354
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:141-689
               
               
               Cow position:chr11:63653342-63652776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 176

               
               
               Conread position:148-689
               
               
               Cow position:chr11:35738999-35738443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 173

               
               
               Conread position:149-615
               
               
               Cow position:chr11:28422191-28422672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:150-689
               
               
               Cow position:chr11:64353977-64353423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 168

               
               
               Conread position:165-601
               
               
               Cow position:chr11:75870504-75870070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):242, 13

               
               
               Conread position:165-692
               
               
               Cow position:chr11:3229481-3230014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:166-626
               
               
               Cow position:chr11:50136473-50135998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 136

               
               
               Conread position:168-669
               
               
               Cow position:chr11:60604458-60604972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 165

               
               
               Conread position:168-674
               
               
               Cow position:chr11:18889732-18890220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 41

               
               
               Conread position:181-573
               
               
               Cow position:chr11:72869121-72869507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:181-689
               
               
               Cow position:chr11:62874331-62873799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:366
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:182-468
               
               
               Cow position:chr11:81068546-81068830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:184-666
               
               
               Cow position:chr11:62612656-62613132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:335
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:188-478
               
               
               Cow position:chr11:31531534-31531818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):208, 126

               
               
               Conread position:188-689
               
               
               Cow position:chr11:35542684-35542169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 129

               
               
               Conread position:188-689
               
               
               Cow position:chr11:63861252-63860744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 126

               
               
               Conread position:188-716
               
               
               Cow position:chr11:35263418-35262874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 131

               
               
               Conread position:189-689
               
               
               Cow position:chr11:9707533-9708047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 128

               
               
               Conread position:190-669
               
               
               Cow position:chr11:80472550-80472076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 91

               
               
               Conread position:208-682
               
               
               Cow position:chr11:7318436-7318918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:307
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):89, 367

               
               
               Conread position:209-698
               
               
               Cow position:chr11:39600456-39599955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:224-452
               
               
               Cow position:chr11:40457338-40457570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:225-570
               
               
               Cow position:chr11:8837265-8836921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):253, 104

               
               
               Conread position:225-678
               
               
               Cow position:chr11:34022369-34022817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):261, 92

               
               
               Conread position:225-710
               
               
               Cow position:chr11:38640372-38640867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 92

               
               
               Conread position:229-425
               
               
               Cow position:chr11:39472738-39472936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):159, 15

               
               
               Conread position:234-464
               
               
               Cow position:chr11:75361392-75361160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):163, 79

               
               
               Conread position:242-700
               
               
               Cow position:chr11:81317851-81317374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:310
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:244-681
               
               
               Cow position:chr11:7680404-7680856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:300
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):144, 73

               
               
               Conread position:247-689
               
               
               Cow position:chr11:79749440-79748983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 56

               
               
               Conread position:249-678
               
               
               Cow position:chr11:27922240-27922684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):149, 54

               
               
               Conread position:251-689
               
               
               Cow position:chr11:41313743-41314195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 66

               
               
               Conread position:252-678
               
               
               Cow position:chr11:75511744-75511301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):137, 65

               
               
               Conread position:254-678
               
               
               Cow position:chr11:27074526-27074941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:255-680
               
               
               Cow position:chr11:59005098-59004666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):134, 61

               
               
               Conread position:256-678
               
               
               Cow position:chr11:11256524-11256957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):135, 65

               
               
               Conread position:258-693
               
               
               Cow position:chr11:1285671-1285218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:302
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):38, 322

               
               
               Conread position:264-485
               
               
               Cow position:chr11:27283448-27283674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:264-709
               
               
               Cow position:chr11:57755458-57755001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:270-660
               
               
               Cow position:chr11:56891749-56891347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:270-663
               
               
               Cow position:chr11:2568207-2567803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:271-616
               
               
               Cow position:chr11:9238572-9238929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:272-721
               
               
               Cow position:chr11:75553317-75552858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:289-689
               
               
               Cow position:chr11:31892438-31892841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:294-631
               
               
               Cow position:chr11:52936293-52936649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):26, 292

               
               
               Conread position:307-620
               
               
               Cow position:chr11:42556023-42556338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:307-703
               
               
               Cow position:chr11:48168559-48168147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:308-548
               
               
               Cow position:chr11:81923026-81922773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:318-689
               
               
               Cow position:chr11:52247451-52247820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):5, 129

               
               
               Conread position:324-729
               
               
               Cow position:chr11:54650346-54649934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 262

               
               
               Conread position:329-689
               
               
               Cow position:chr11:11052652-11052294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:334-665
               
               
               Cow position:chr11:54280207-54279857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 247

               
               
               Conread position:340-689
               
               
               Cow position:chr11:8266348-8266714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 237

               
               
               Conread position:362-689
               
               
               Cow position:chr11:29613947-29614291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 227

               
               
               Conread position:362-689
               
               
               Cow position:chr11:30928937-30929281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:368-697
               
               
               Cow position:chr11:21879216-21878882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:369-689
               
               
               Cow position:chr11:67920763-67920439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:369-693
               
               
               Cow position:chr11:53690184-53690512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:379-674
               
               
               Cow position:chr11:84214141-84213841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 162

               
               
               Conread position:414-679
               
               
               Cow position:chr11:78703537-78703810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:427-689
               
               
               Cow position:chr11:12177715-12177987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:1-622
               
               
               Cow position:chr12:3363417-3364061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:1-678
               
               
               Cow position:chr12:11100720-11101421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-681
               
               
               Cow position:chr12:30686217-30686918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 291

               
               
               Conread position:1-706
               
               
               Cow position:chr12:1407308-1408030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 323

               
               
               Conread position:2-477
               
               
               Cow position:chr12:22593231-22593718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 324

               
               
               Conread position:2-669
               
               
               Cow position:chr12:42192713-42193378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:2-689
               
               
               Cow position:chr12:20846611-20847320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 311

               
               
               Conread position:3-402
               
               
               Cow position:chr12:22571321-22571722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 301

               
               
               Conread position:3-477
               
               
               Cow position:chr12:34964824-34964337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-581
               
               
               Cow position:chr12:36406194-36405590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-688
               
               
               Cow position:chr12:42605702-42604994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr12:10358172-10358878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr12:12929409-12928724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 171

               
               
               Conread position:3-689
               
               
               Cow position:chr12:32656029-32656731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr12:34175831-34176547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 316

               
               
               Conread position:3-689
               
               
               Cow position:chr12:37561482-37562189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 306

               
               
               Conread position:3-689
               
               
               Cow position:chr12:38892836-38893546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-693
               
               
               Cow position:chr12:17717775-17718488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr12:22747688-22748402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:3-693
               
               
               Cow position:chr12:25266859-25266146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr12:35548654-35547941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 65

               
               
               Conread position:3-696
               
               
               Cow position:chr12:1886873-1886169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:12-678
               
               
               Cow position:chr12:8137481-8136817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 103

               
               
               Conread position:14-634
               
               
               Cow position:chr12:27515147-27515780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:17-624
               
               
               Cow position:chr12:12295028-12295651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:18-693
               
               
               Cow position:chr12:6106859-6106161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 308

               
               
               Conread position:26-693
               
               
               Cow position:chr12:1437425-1438097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 300

               
               
               Conread position:42-599
               
               
               Cow position:chr12:19861212-19861781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 280

               
               
               Conread position:45-478
               
               
               Cow position:chr12:46975920-46976364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:59-657
               
               
               Cow position:chr12:16674559-16675157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:59-681
               
               
               Cow position:chr12:41464247-41463604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:59-689
               
               
               Cow position:chr12:14569280-14568632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:68-383
               
               
               Cow position:chr12:12241618-12241932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:71-693
               
               
               Cow position:chr12:62662-62020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 237

               
               
               Conread position:73-585
               
               
               Cow position:chr12:10542482-10541962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:79-678
               
               
               Cow position:chr12:487249-487840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:410
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 35

               
               
               Conread position:94-644
               
               
               Cow position:chr12:21091202-21090640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 226

               
               
               Conread position:123-678
               
               
               Cow position:chr12:8628597-8628028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:375
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 198

               
               
               Conread position:124-532
               
               
               Cow position:chr12:35263114-35263527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:140-699
               
               
               Cow position:chr12:25144083-25143537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:148-627
               
               
               Cow position:chr12:1469498-1469002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:149-689
               
               
               Cow position:chr12:24980349-24980903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 155

               
               
               Conread position:166-473
               
               
               Cow position:chr12:36250110-36250406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):154, 64

               
               
               Conread position:166-688
               
               
               Cow position:chr12:758066-758602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:178-689
               
               
               Cow position:chr12:1512106-1511581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 125

               
               
               Conread position:178-704
               
               
               Cow position:chr12:28764344-28763803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 139

               
               
               Conread position:183-689
               
               
               Cow position:chr12:31028153-31027637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 8

               
               
               Conread position:183-714
               
               
               Cow position:chr12:21658484-21659017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:353
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:189-477
               
               
               Cow position:chr12:15539467-15539760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):205, 126

               
               
               Conread position:189-494
               
               
               Cow position:chr12:21309384-21309071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:189-693
               
               
               Cow position:chr12:39929837-39930356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 128

               
               
               Conread position:204-693
               
               
               Cow position:chr12:27958842-27958338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 99

               
               
               Conread position:213-478
               
               
               Cow position:chr12:26822378-26822648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:213-678
               
               
               Cow position:chr12:27506956-27506476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 104

               
               
               Conread position:216-419
               
               
               Cow position:chr12:4200313-4200517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):178, 101

               
               
               Conread position:223-693
               
               
               Cow position:chr12:5328206-5327722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 80

               
               
               Conread position:224-666
               
               
               Cow position:chr12:46163443-46163901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 79

               
               
               Conread position:239-678
               
               
               Cow position:chr12:20460000-20459546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):155, 78

               
               
               Conread position:245-450
               
               
               Cow position:chr12:20334252-20334468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:258-641
               
               
               Cow position:chr12:536831-536431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 45

               
               
               Conread position:270-568
               
               
               Cow position:chr12:21211498-21211813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:272-693
               
               
               Cow position:chr12:24696298-24696733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:304-623
               
               
               Cow position:chr12:8727905-8728228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 19

               
               
               Conread position:305-692
               
               
               Cow position:chr12:26870091-26870493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:306-663
               
               
               Cow position:chr12:250528-250154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:327-626
               
               
               Cow position:chr12:13115779-13115472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 167

               
               
               Conread position:333-693
               
               
               Cow position:chr12:25148808-25148430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 247

               
               
               Conread position:337-689
               
               
               Cow position:chr12:30501454-30501823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 252

               
               
               Conread position:361-693
               
               
               Cow position:chr12:4758966-4758642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:368-689
               
               
               Cow position:chr12:1491011-1491349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:373-689
               
               
               Cow position:chr12:32757546-32757879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 207

               
               
               Conread position:374-566
               
               
               Cow position:chr12:4378988-4378789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:387-670
               
               
               Cow position:chr12:42194508-42194799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:390-689
               
               
               Cow position:chr12:5106930-5107240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 137

               
               
               Conread position:395-693
               
               
               Cow position:chr12:35161485-35161795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:395-693
               
               
               Cow position:chr12:35162641-35162951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:404-689
               
               
               Cow position:chr12:42558164-42557882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 159

               
               
               Conread position:1-401
               
               
               Cow position:chr13:15559599-15560005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 322

               
               
               Conread position:1-485
               
               
               Cow position:chr13:19394758-19394269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 53

               
               
               Conread position:1-608
               
               
               Cow position:chr13:30772223-30771612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:391
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:1-616
               
               
               Cow position:chr13:48548417-48549052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:1-664
               
               
               Cow position:chr13:11796439-11795744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 208

               
               
               Conread position:1-678
               
               
               Cow position:chr13:32734923-32734222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr13:34040077-34039376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 266

               
               
               Conread position:1-678
               
               
               Cow position:chr13:54239160-54238477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:1-689
               
               
               Cow position:chr13:3313891-3314601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 327

               
               
               Conread position:1-689
               
               
               Cow position:chr13:4943649-4944364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 252

               
               
               Conread position:1-689
               
               
               Cow position:chr13:5230681-5229991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr13:5261033-5261725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:1-689
               
               
               Cow position:chr13:6665870-6665154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr13:47569367-47570066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 210

               
               
               Conread position:1-716
               
               
               Cow position:chr13:393865-393141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:2-607
               
               
               Cow position:chr13:5718365-5717766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:409
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:2-689
               
               
               Cow position:chr13:61953503-61954216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 336

               
               
               Conread position:3-395
               
               
               Cow position:chr13:61085155-61085556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 201

               
               
               Conread position:3-402
               
               
               Cow position:chr13:17310685-17311088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 307

               
               
               Conread position:3-455
               
               
               Cow position:chr13:23455705-23456169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-477
               
               
               Cow position:chr13:644707-644219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr13:5499721-5499238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-478
               
               
               Cow position:chr13:114304-114792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:3-479
               
               
               Cow position:chr13:27470231-27470715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:3-539
               
               
               Cow position:chr13:51006758-51006196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-611
               
               
               Cow position:chr13:35539432-35540070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 306

               
               
               Conread position:3-622
               
               
               Cow position:chr13:15279524-15278903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:3-633
               
               
               Cow position:chr13:36671921-36672574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 324

               
               
               Conread position:3-656
               
               
               Cow position:chr13:11169854-11169204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:3-660
               
               
               Cow position:chr13:19423902-19424581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:3-663
               
               
               Cow position:chr13:34322692-34322024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:3-668
               
               
               Cow position:chr13:24932527-24931834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 321

               
               
               Conread position:3-678
               
               
               Cow position:chr13:36935998-36936697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:3-687
               
               
               Cow position:chr13:16806862-16807569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr13:562121-561412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr13:18122605-18121896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 306

               
               
               Conread position:3-689
               
               
               Cow position:chr13:19565986-19566695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:3-689
               
               
               Cow position:chr13:31731297-31730597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr13:32983131-32982428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr13:50111735-50112440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 202

               
               
               Conread position:3-693
               
               
               Cow position:chr13:6360132-6360845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr13:49975941-49976649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 53

               
               
               Conread position:3-696
               
               
               Cow position:chr13:60647315-60646605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-732
               
               
               Cow position:chr13:25881516-25882259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 42

               
               
               Conread position:4-689
               
               
               Cow position:chr13:32080131-32080850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 322

               
               
               Conread position:5-403
               
               
               Cow position:chr13:25929216-25929610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:5-478
               
               
               Cow position:chr13:38076023-38075553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:8-477
               
               
               Cow position:chr13:19122232-19121757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:9-606
               
               
               Cow position:chr13:60698527-60697913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:9-689
               
               
               Cow position:chr13:13333683-13332980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 315

               
               
               Conread position:9-721
               
               
               Cow position:chr13:21854618-21855340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:10-675
               
               
               Cow position:chr13:20572429-20571747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 152

               
               
               Conread position:12-689
               
               
               Cow position:chr13:58717831-58718530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 185

               
               
               Conread position:12-690
               
               
               Cow position:chr13:3481587-3480912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:14-441
               
               
               Cow position:chr13:55962637-55963067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:16-548
               
               
               Cow position:chr13:47466712-47467242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:368
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:17-681
               
               
               Cow position:chr13:11301504-11302170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:17-689
               
               
               Cow position:chr13:46461949-46462613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:18-678
               
               
               Cow position:chr13:21401127-21401799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:19-716
               
               
               Cow position:chr13:36105419-36106112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:20-451
               
               
               Cow position:chr13:32776787-32776342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:34-566
               
               
               Cow position:chr13:18976379-18975849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 54

               
               
               Conread position:41-658
               
               
               Cow position:chr13:59403841-59403231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:42-689
               
               
               Cow position:chr13:14183644-14182979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:45-688
               
               
               Cow position:chr13:35685694-35686349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:48-689
               
               
               Cow position:chr13:34939989-34940637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:54-689
               
               
               Cow position:chr13:32254030-32253377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr13:34906245-34905599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:61-714
               
               
               Cow position:chr13:19115083-19114435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:68-725
               
               
               Cow position:chr13:44734397-44735037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:70-472
               
               
               Cow position:chr13:39922193-39921800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 113

               
               
               Conread position:72-689
               
               
               Cow position:chr13:21837956-21837323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 246

               
               
               Conread position:79-689
               
               
               Cow position:chr13:34297934-34298554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 243

               
               
               Conread position:81-614
               
               
               Cow position:chr13:5626475-5625921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 259

               
               
               Conread position:92-452
               
               
               Cow position:chr13:22777894-22778253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:93-423
               
               
               Cow position:chr13:48428336-48428680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):164, 21

               
               
               Conread position:94-714
               
               
               Cow position:chr13:34088699-34089333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:97-360
               
               
               Cow position:chr13:34688233-34687988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 80

               
               
               Conread position:117-678
               
               
               Cow position:chr13:1142397-1142962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:379
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:119-689
               
               
               Cow position:chr13:31989266-31989848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:119-689
               
               
               Cow position:chr13:50190682-50190097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:120-689
               
               
               Cow position:chr13:2138789-2138204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:120-689
               
               
               Cow position:chr13:53157998-53157415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:124-603
               
               
               Cow position:chr13:45929906-45930404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:135-689
               
               
               Cow position:chr13:32956051-32955487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:139-689
               
               
               Cow position:chr13:31509555-31510118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:147-460
               
               
               Cow position:chr13:24581024-24580713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):242, 18

               
               
               Conread position:147-675
               
               
               Cow position:chr13:14553185-14552664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:148-677
               
               
               Cow position:chr13:24289923-24289400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:337
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):261, 43

               
               
               Conread position:148-678
               
               
               Cow position:chr13:12565722-12565197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 16

               
               
               Conread position:150-659
               
               
               Cow position:chr13:47575118-47574615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:150-707
               
               
               Cow position:chr13:487961-488527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:157-676
               
               
               Cow position:chr13:34095486-34094956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:353
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:166-478
               
               
               Cow position:chr13:46599153-46598836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):226, 151

               
               
               Conread position:167-477
               
               
               Cow position:chr13:46427025-46427337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):228, 82

               
               
               Conread position:168-649
               
               
               Cow position:chr13:31726237-31725742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 135

               
               
               Conread position:170-565
               
               
               Cow position:chr13:48658900-48659304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:178-477
               
               
               Cow position:chr13:4734024-4734328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):216, 136

               
               
               Conread position:178-646
               
               
               Cow position:chr13:52279267-52279758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 85

               
               
               Conread position:178-689
               
               
               Cow position:chr13:20564523-20564007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:349
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):220, 51

               
               
               Conread position:180-693
               
               
               Cow position:chr13:53051287-53051815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 123

               
               
               Conread position:181-470
               
               
               Cow position:chr13:41493459-41493179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:183-687
               
               
               Cow position:chr13:32794883-32794369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 134

               
               
               Conread position:187-709
               
               
               Cow position:chr13:41277796-41278309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:344
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):196, 46

               
               
               Conread position:189-689
               
               
               Cow position:chr13:143659-143145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 128

               
               
               Conread position:192-675
               
               
               Cow position:chr13:14737357-14737854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):206, 12

               
               
               Conread position:207-689
               
               
               Cow position:chr13:3022006-3021511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 66

               
               
               Conread position:216-693
               
               
               Cow position:chr13:19311288-19310820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:224-434
               
               
               Cow position:chr13:12659188-12659400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):167, 106

               
               
               Conread position:237-678
               
               
               Cow position:chr13:22714403-22714866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):161, 77

               
               
               Conread position:242-689
               
               
               Cow position:chr13:43121035-43120575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 75

               
               
               Conread position:246-651
               
               
               Cow position:chr13:30242739-30243160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):142, 71

               
               
               Conread position:250-678
               
               
               Cow position:chr13:5327794-5328223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):146, 65

               
               
               Conread position:252-678
               
               
               Cow position:chr13:3651919-3651479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 65

               
               
               Conread position:255-594
               
               
               Cow position:chr13:33929614-33929262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:259-476
               
               
               Cow position:chr13:58263817-58264035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:259-693
               
               
               Cow position:chr13:41903848-41903394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:264-464
               
               
               Cow position:chr13:52149803-52150001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:269-478
               
               
               Cow position:chr13:51426610-51426400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):125, 62

               
               
               Conread position:269-510
               
               
               Cow position:chr13:24703875-24703630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:269-689
               
               
               Cow position:chr13:1591614-1591182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:270-678
               
               
               Cow position:chr13:17318829-17318411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:270-689
               
               
               Cow position:chr13:30469574-30469144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:271-693
               
               
               Cow position:chr13:36212261-36211825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 45

               
               
               Conread position:275-678
               
               
               Cow position:chr13:21278750-21278343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:283-689
               
               
               Cow position:chr13:28131060-28131480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:287-678
               
               
               Cow position:chr13:47729240-47728836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):107, 30

               
               
               Conread position:307-678
               
               
               Cow position:chr13:10732564-10732945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:316-693
               
               
               Cow position:chr13:18761665-18761286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:327-666
               
               
               Cow position:chr13:4934096-4934452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 274

               
               
               Conread position:337-694
               
               
               Cow position:chr13:43160305-43160677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 229

               
               
               Conread position:351-639
               
               
               Cow position:chr13:27408906-27408604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:351-678
               
               
               Cow position:chr13:20538926-20538579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):43, 240

               
               
               Conread position:368-689
               
               
               Cow position:chr13:43975307-43974977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 213

               
               
               Conread position:376-689
               
               
               Cow position:chr13:28132129-28132451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):101, 149

               
               
               Conread position:383-689
               
               
               Cow position:chr13:44659741-44659428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:386-689
               
               
               Cow position:chr13:14411511-14411197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:405-656
               
               
               Cow position:chr13:40426307-40426569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 149

               
               
               Conread position:410-666
               
               
               Cow position:chr13:21657892-21657626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:410-711
               
               
               Cow position:chr13:18945831-18945525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:417-693
               
               
               Cow position:chr13:44466482-44466196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 231

               
               
               Conread position:419-693
               
               
               Cow position:chr13:57431945-57431660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 162

               
               
               Conread position:430-689
               
               
               Cow position:chr13:34993685-34993943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:1-397
               
               
               Cow position:chr14:48361318-48361724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 164

               
               
               Conread position:1-594
               
               
               Cow position:chr14:469395-470001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:1-627
               
               
               Cow position:chr14:44292771-44293418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 241

               
               
               Conread position:1-669
               
               
               Cow position:chr14:37256295-37256979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:1-669
               
               
               Cow position:chr14:40344672-40345345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 198

               
               
               Conread position:1-677
               
               
               Cow position:chr14:40985256-40984553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:1-678
               
               
               Cow position:chr14:36710904-36710226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:1-689
               
               
               Cow position:chr14:5531473-5532184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr14:11151779-11151072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:1-689
               
               
               Cow position:chr14:16997901-16997194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 177

               
               
               Conread position:1-689
               
               
               Cow position:chr14:27041246-27040539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 321

               
               
               Conread position:1-689
               
               
               Cow position:chr14:32584892-32584181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr14:44235784-44236491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 234

               
               
               Conread position:1-689
               
               
               Cow position:chr14:46302037-46302748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 327

               
               
               Conread position:2-494
               
               
               Cow position:chr14:46036639-46036133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:2-595
               
               
               Cow position:chr14:44260603-44261218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:397
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):50, 199

               
               
               Conread position:2-607
               
               
               Cow position:chr14:28210037-28210680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 338

               
               
               Conread position:3-401
               
               
               Cow position:chr14:35383507-35383115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:3-675
               
               
               Cow position:chr14:41445136-41445837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 341

               
               
               Conread position:3-678
               
               
               Cow position:chr14:22104417-22103722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:3-689
               
               
               Cow position:chr14:749462-748754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr14:2288396-2289097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 250

               
               
               Conread position:3-689
               
               
               Cow position:chr14:9046973-9047682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr14:17763250-17762545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr14:19549335-19550039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr14:23255201-23254494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:3-689
               
               
               Cow position:chr14:29045538-29044829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr14:11636700-11637399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:3-694
               
               
               Cow position:chr14:1660592-1661296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:4-693
               
               
               Cow position:chr14:33679202-33679895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:9-689
               
               
               Cow position:chr14:13861374-13860697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:9-693
               
               
               Cow position:chr14:12482581-12483250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:9-723
               
               
               Cow position:chr14:39149066-39149754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:17-630
               
               
               Cow position:chr14:35363703-35363084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:17-715
               
               
               Cow position:chr14:49218482-49219206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 264

               
               
               Conread position:18-455
               
               
               Cow position:chr14:24992979-24992541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:18-607
               
               
               Cow position:chr14:2296859-2297450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:18-663
               
               
               Cow position:chr14:1736371-1735699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 237

               
               
               Conread position:18-673
               
               
               Cow position:chr14:7226558-7227238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 294

               
               
               Conread position:18-693
               
               
               Cow position:chr14:7843943-7844630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 223

               
               
               Conread position:18-706
               
               
               Cow position:chr14:17772012-17771311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:30-693
               
               
               Cow position:chr14:34167470-34168148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:45-452
               
               
               Cow position:chr14:21049493-21049080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 151

               
               
               Conread position:47-382
               
               
               Cow position:chr14:32179154-32179489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 143

               
               
               Conread position:47-678
               
               
               Cow position:chr14:39935947-39936585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:52-451
               
               
               Cow position:chr14:29795655-29795249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 5

               
               
               Conread position:53-673
               
               
               Cow position:chr14:30737839-30738485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:54-506
               
               
               Cow position:chr14:42597318-42596869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:55-395
               
               
               Cow position:chr14:33690372-33690705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:61-689
               
               
               Cow position:chr14:47578815-47579462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 261

               
               
               Conread position:68-707
               
               
               Cow position:chr14:16189767-16190420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:97-693
               
               
               Cow position:chr14:27052928-27052332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:105-694
               
               
               Cow position:chr14:38435270-38435881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 221

               
               
               Conread position:119-665
               
               
               Cow position:chr14:26450233-26449697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 212

               
               
               Conread position:124-652
               
               
               Cow position:chr14:20785368-20785904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 123

               
               
               Conread position:125-684
               
               
               Cow position:chr14:20912150-20912723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:127-689
               
               
               Cow position:chr14:28351429-28350854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:127-690
               
               
               Cow position:chr14:39321116-39321685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:128-675
               
               
               Cow position:chr14:45237597-45238166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:368
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:130-689
               
               
               Cow position:chr14:9810954-9811525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:135-388
               
               
               Cow position:chr14:2486894-2486647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:135-693
               
               
               Cow position:chr14:15272986-15272413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 180

               
               
               Conread position:144-477
               
               
               Cow position:chr14:18977138-18977479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):252, 157

               
               
               Conread position:146-693
               
               
               Cow position:chr14:19418380-19418943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 158

               
               
               Conread position:147-438
               
               
               Cow position:chr14:19794448-19794167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):259, 17

               
               
               Conread position:148-605
               
               
               Cow position:chr14:20562574-20562102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:148-689
               
               
               Cow position:chr14:12859351-12858793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 171

               
               
               Conread position:151-677
               
               
               Cow position:chr14:32527552-32527030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:342
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):228, 20

               
               
               Conread position:155-678
               
               
               Cow position:chr14:30593966-30593428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:324
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:166-678
               
               
               Cow position:chr14:11563847-11564370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 151

               
               
               Conread position:170-678
               
               
               Cow position:chr14:25429965-25430486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:346
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:171-693
               
               
               Cow position:chr14:13275387-13275922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 63

               
               
               Conread position:173-402
               
               
               Cow position:chr14:18288712-18288938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:177-689
               
               
               Cow position:chr14:5644723-5645250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 14

               
               
               Conread position:178-627
               
               
               Cow position:chr14:12067161-12066704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):190, 139

               
               
               Conread position:178-678
               
               
               Cow position:chr14:37981998-37981489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 10

               
               
               Conread position:182-478
               
               
               Cow position:chr14:31336972-31336662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:187-607
               
               
               Cow position:chr14:13620105-13619666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:209-687
               
               
               Cow position:chr14:46637182-46636693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 90

               
               
               Conread position:212-695
               
               
               Cow position:chr14:41477294-41477785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 101

               
               
               Conread position:213-693
               
               
               Cow position:chr14:15337279-15336784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 104

               
               
               Conread position:224-689
               
               
               Cow position:chr14:8965600-8965130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:225-627
               
               
               Cow position:chr14:9253895-9254313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:229-477
               
               
               Cow position:chr14:14182602-14182853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):165, 11

               
               
               Conread position:234-468
               
               
               Cow position:chr14:20957388-20957626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:234-689
               
               
               Cow position:chr14:44554229-44554690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 294

               
               
               Conread position:244-666
               
               
               Cow position:chr14:37044165-37044574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:253-471
               
               
               Cow position:chr14:33713519-33713737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):139, 63

               
               
               Conread position:258-689
               
               
               Cow position:chr14:1726544-1726990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:264-693
               
               
               Cow position:chr14:45789381-45789820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 69

               
               
               Conread position:265-443
               
               
               Cow position:chr14:33838217-33838397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:265-607
               
               
               Cow position:chr14:33672994-33673344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 59

               
               
               Conread position:265-678
               
               
               Cow position:chr14:41478155-41478584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:271-689
               
               
               Cow position:chr14:40968567-40968999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:275-600
               
               
               Cow position:chr14:36344854-36344521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:286-689
               
               
               Cow position:chr14:21200345-21200767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:291-678
               
               
               Cow position:chr14:48494677-48495077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:300-707
               
               
               Cow position:chr14:18950779-18951183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:309-706
               
               
               Cow position:chr14:29891586-29891175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:316-678
               
               
               Cow position:chr14:48491023-48491404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:325-696
               
               
               Cow position:chr14:34674564-34674951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:327-714
               
               
               Cow position:chr14:10092144-10091737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 245

               
               
               Conread position:333-689
               
               
               Cow position:chr14:13683037-13683410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 200

               
               
               Conread position:334-675
               
               
               Cow position:chr14:37181519-37181164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:337-568
               
               
               Cow position:chr14:17075725-17075958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 148

               
               
               Conread position:337-689
               
               
               Cow position:chr14:13308218-13308576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:338-477
               
               
               Cow position:chr14:20755854-20755715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:340-806
               
               
               Cow position:chr14:16037078-16037561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 193

               
               
               Conread position:343-693
               
               
               Cow position:chr14:33515029-33515386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:356-623
               
               
               Cow position:chr14:37882246-37882532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 233

               
               
               Conread position:357-677
               
               
               Cow position:chr14:2292218-2292555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):41, 231

               
               
               Conread position:368-709
               
               
               Cow position:chr14:40720386-40720739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 202

               
               
               Conread position:371-678
               
               
               Cow position:chr14:50029308-50028986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:375-660
               
               
               Cow position:chr14:13091252-13091540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:386-689
               
               
               Cow position:chr14:31882358-31882044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 212

               
               
               Conread position:395-689
               
               
               Cow position:chr14:50136811-50137115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:405-689
               
               
               Cow position:chr14:26497222-26496930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 174

               
               
               Conread position:409-681
               
               
               Cow position:chr14:14082312-14082595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:465-689
               
               
               Cow position:chr14:8103049-8102829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:1-421
               
               
               Cow position:chr15:7448660-7448239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:1-452
               
               
               Cow position:chr15:27748148-27748612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:1-470
               
               
               Cow position:chr15:31990450-31989976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:1-473
               
               
               Cow position:chr15:35273279-35273750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:1-478
               
               
               Cow position:chr15:16343683-16343197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:1-478
               
               
               Cow position:chr15:21840256-21840751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1-478
               
               
               Cow position:chr15:30727113-30726623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 223

               
               
               Conread position:1-505
               
               
               Cow position:chr15:7882056-7882567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:1-508
               
               
               Cow position:chr15:24297332-24297852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 324

               
               
               Conread position:1-665
               
               
               Cow position:chr15:17397861-17398521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 182

               
               
               Conread position:1-669
               
               
               Cow position:chr15:8753019-8753691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:1-678
               
               
               Cow position:chr15:7552759-7553446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:1-678
               
               
               Cow position:chr15:8101595-8102290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 322

               
               
               Conread position:1-678
               
               
               Cow position:chr15:21663606-21662903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:1-678
               
               
               Cow position:chr15:44072585-44073286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr15:49198574-49199258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 192

               
               
               Conread position:1-689
               
               
               Cow position:chr15:2900113-2899410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:1-689
               
               
               Cow position:chr15:4387892-4388595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:1-689
               
               
               Cow position:chr15:4653614-4654316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:1-689
               
               
               Cow position:chr15:15344966-15344255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr15:18578849-18579574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:1-689
               
               
               Cow position:chr15:32491751-32491040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr15:36620000-36619304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 189

               
               
               Conread position:1-695
               
               
               Cow position:chr15:6493076-6493781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:372
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:1-723
               
               
               Cow position:chr15:38982789-38983539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:1-723
               
               
               Cow position:chr15:49449003-49448278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 200

               
               
               Conread position:3-477
               
               
               Cow position:chr15:11269142-11269630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr15:25204866-25204382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-477
               
               
               Cow position:chr15:25331570-25332054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-477
               
               
               Cow position:chr15:52208681-52209167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:3-566
               
               
               Cow position:chr15:6487600-6488186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:3-581
               
               
               Cow position:chr15:52977096-52977700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-602
               
               
               Cow position:chr15:23709373-23708749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-663
               
               
               Cow position:chr15:5243889-5243210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:3-675
               
               
               Cow position:chr15:17295150-17295836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 203

               
               
               Conread position:3-678
               
               
               Cow position:chr15:28487983-28487290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-687
               
               
               Cow position:chr15:36941246-36940536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:3-689
               
               
               Cow position:chr15:480720-481432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 326

               
               
               Conread position:3-689
               
               
               Cow position:chr15:2633572-2632860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 213

               
               
               Conread position:3-689
               
               
               Cow position:chr15:2663527-2664236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr15:3153424-3152718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 255

               
               
               Conread position:3-689
               
               
               Cow position:chr15:13429963-13430672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 310

               
               
               Conread position:3-689
               
               
               Cow position:chr15:13546908-13546204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:3-689
               
               
               Cow position:chr15:18229205-18229913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr15:25070353-25069646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:3-689
               
               
               Cow position:chr15:25132095-25132805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr15:31270732-31270023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr15:32702598-32701883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr15:36330317-36329612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 243

               
               
               Conread position:3-689
               
               
               Cow position:chr15:42944466-42943758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 307

               
               
               Conread position:3-689
               
               
               Cow position:chr15:51911402-51910688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:452
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 251

               
               
               Conread position:3-690
               
               
               Cow position:chr15:7565142-7565852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr15:4081145-4081854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 208

               
               
               Conread position:3-693
               
               
               Cow position:chr15:7547018-7547720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-693
               
               
               Cow position:chr15:18265622-18264909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr15:31586253-31585545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:5-733
               
               
               Cow position:chr15:23275425-23274687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:9-678
               
               
               Cow position:chr15:8358806-8359486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:9-693
               
               
               Cow position:chr15:21636419-21637124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 303

               
               
               Conread position:11-499
               
               
               Cow position:chr15:8967327-8966821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:12-678
               
               
               Cow position:chr15:32718445-32717772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:17-423
               
               
               Cow position:chr15:40108953-40109353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:17-478
               
               
               Cow position:chr15:52738478-52738940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:17-594
               
               
               Cow position:chr15:42634989-42634419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:372
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:17-678
               
               
               Cow position:chr15:9736563-9735885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:17-678
               
               
               Cow position:chr15:13679547-13680214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:18-678
               
               
               Cow position:chr15:59791-60471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 138

               
               
               Conread position:18-691
               
               
               Cow position:chr15:12365563-12366244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 193

               
               
               Conread position:24-460
               
               
               Cow position:chr15:8411196-8411659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 171

               
               
               Conread position:24-562
               
               
               Cow position:chr15:52440301-52440853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 206

               
               
               Conread position:29-681
               
               
               Cow position:chr15:21825030-21825707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 294

               
               
               Conread position:31-689
               
               
               Cow position:chr15:5019563-5020220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:41-690
               
               
               Cow position:chr15:42729117-42729761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:417
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:42-678
               
               
               Cow position:chr15:8628494-8629147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 95

               
               
               Conread position:44-689
               
               
               Cow position:chr15:37460075-37460722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 31

               
               
               Conread position:45-392
               
               
               Cow position:chr15:22455821-22455478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):80, 138

               
               
               Conread position:46-455
               
               
               Cow position:chr15:29245743-29245328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 62

               
               
               Conread position:46-693
               
               
               Cow position:chr15:41786500-41785855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 26

               
               
               Conread position:51-678
               
               
               Cow position:chr15:17287195-17287832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 242

               
               
               Conread position:59-452
               
               
               Cow position:chr15:17803777-17803385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:60-681
               
               
               Cow position:chr15:21966241-21966876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:62-654
               
               
               Cow position:chr15:40330271-40329668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:392
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:63-689
               
               
               Cow position:chr15:13980516-13981162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:64-501
               
               
               Cow position:chr15:6462599-6463044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:68-471
               
               
               Cow position:chr15:30436894-30437296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:69-678
               
               
               Cow position:chr15:13682546-13683182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:70-640
               
               
               Cow position:chr15:53575448-53574868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:77-455
               
               
               Cow position:chr15:6240155-6240531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:85-434
               
               
               Cow position:chr15:14887526-14887881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:89-696
               
               
               Cow position:chr15:11291521-11290915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:90-485
               
               
               Cow position:chr15:20518090-20518484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:94-601
               
               
               Cow position:chr15:6381816-6381286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 221

               
               
               Conread position:94-677
               
               
               Cow position:chr15:50955883-50956466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:103-689
               
               
               Cow position:chr15:32713949-32714551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 212

               
               
               Conread position:119-689
               
               
               Cow position:chr15:30044-29460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:119-689
               
               
               Cow position:chr15:3258244-3257657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 196

               
               
               Conread position:120-693
               
               
               Cow position:chr15:4688312-4688885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:121-678
               
               
               Cow position:chr15:4219642-4219075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:125-690
               
               
               Cow position:chr15:23773586-23774152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:135-678
               
               
               Cow position:chr15:4629965-4629407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:373
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:139-502
               
               
               Cow position:chr15:7577423-7577795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 179

               
               
               Conread position:139-689
               
               
               Cow position:chr15:6616081-6616646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 179

               
               
               Conread position:140-678
               
               
               Cow position:chr15:6649115-6648571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:143-604
               
               
               Cow position:chr15:16341377-16340904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:148-689
               
               
               Cow position:chr15:50150989-50151548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 173

               
               
               Conread position:148-693
               
               
               Cow position:chr15:2795487-2796048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:149-725
               
               
               Cow position:chr15:6463384-6463964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:166-477
               
               
               Cow position:chr15:32741278-32741594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):228, 151

               
               
               Conread position:166-689
               
               
               Cow position:chr15:24090139-24090676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 137

               
               
               Conread position:166-693
               
               
               Cow position:chr15:34517449-34517985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 166

               
               
               Conread position:166-721
               
               
               Cow position:chr15:46430712-46431263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:168-477
               
               
               Cow position:chr15:38426463-38426777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 146

               
               
               Conread position:168-565
               
               
               Cow position:chr15:20779874-20779471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 149

               
               
               Conread position:168-678
               
               
               Cow position:chr15:25104760-25104262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 62

               
               
               Conread position:168-679
               
               
               Cow position:chr15:4788483-4787959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 116

               
               
               Conread position:172-653
               
               
               Cow position:chr15:1328160-1328653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 95

               
               
               Conread position:172-678
               
               
               Cow position:chr15:18020053-18019544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:339
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:174-753
               
               
               Cow position:chr15:42454609-42454039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:342
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:195-615
               
               
               Cow position:chr15:44781406-44781841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:204-678
               
               
               Cow position:chr15:6164743-6164254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:204-693
               
               
               Cow position:chr15:7587432-7586928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 113

               
               
               Conread position:212-670
               
               
               Cow position:chr15:19215924-19215483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):175, 105

               
               
               Conread position:215-709
               
               
               Cow position:chr15:26932396-26932914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 321

               
               
               Conread position:218-678
               
               
               Cow position:chr15:10735920-10736407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):166, 114

               
               
               Conread position:219-693
               
               
               Cow position:chr15:21806213-21806702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 84

               
               
               Conread position:223-475
               
               
               Cow position:chr15:10800471-10800721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:234-707
               
               
               Cow position:chr15:38678435-38678907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):165, 66

               
               
               Conread position:251-693
               
               
               Cow position:chr15:12858540-12858994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 64

               
               
               Conread position:256-689
               
               
               Cow position:chr15:6762695-6762248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 61

               
               
               Conread position:257-689
               
               
               Cow position:chr15:17074960-17074515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 60

               
               
               Conread position:264-659
               
               
               Cow position:chr15:20405207-20404799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 56

               
               
               Conread position:264-661
               
               
               Cow position:chr15:22732372-22731963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:269-687
               
               
               Cow position:chr15:23797541-23797980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:270-648
               
               
               Cow position:chr15:16967085-16966690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 358

               
               
               Conread position:272-689
               
               
               Cow position:chr15:4140492-4140061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:272-689
               
               
               Cow position:chr15:27760131-27759703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 167

               
               
               Conread position:282-689
               
               
               Cow position:chr15:11627838-11628250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:292-693
               
               
               Cow position:chr15:5454229-5454638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:298-689
               
               
               Cow position:chr15:26591903-26591498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:330-621
               
               
               Cow position:chr15:49298875-49299177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:330-673
               
               
               Cow position:chr15:30639193-30638843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:333-678
               
               
               Cow position:chr15:7963560-7963196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 247

               
               
               Conread position:333-721
               
               
               Cow position:chr15:25122457-25122057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):59, 216

               
               
               Conread position:335-678
               
               
               Cow position:chr15:21946480-21946141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:339-621
               
               
               Cow position:chr15:12720904-12721198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 206

               
               
               Conread position:346-680
               
               
               Cow position:chr15:19654541-19654891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:347-644
               
               
               Cow position:chr15:3564269-3563957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):52, 183

               
               
               Conread position:347-689
               
               
               Cow position:chr15:23667005-23666646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 233

               
               
               Conread position:348-707
               
               
               Cow position:chr15:34058299-34057931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:357-689
               
               
               Cow position:chr15:19724274-19724616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 124

               
               
               Conread position:368-689
               
               
               Cow position:chr15:2898480-2898149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 200

               
               
               Conread position:371-642
               
               
               Cow position:chr15:21645590-21645299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:376-678
               
               
               Cow position:chr15:21367101-21366781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:386-689
               
               
               Cow position:chr15:6805248-6805560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):24, 196

               
               
               Conread position:387-627
               
               
               Cow position:chr15:34955446-34955697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:395-675
               
               
               Cow position:chr15:20429783-20430065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:396-693
               
               
               Cow position:chr15:33753736-33753427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:405-688
               
               
               Cow position:chr15:41964336-41964604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:408-689
               
               
               Cow position:chr15:11575450-11575163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:421-620
               
               
               Cow position:chr15:21655557-21655750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:427-688
               
               
               Cow position:chr15:33305210-33304939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:427-689
               
               
               Cow position:chr15:6658538-6658267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:428-693
               
               
               Cow position:chr15:32646938-32647213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:487-688
               
               
               Cow position:chr15:6043275-6043471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:1-395
               
               
               Cow position:chr16:20635724-20635326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:1-443
               
               
               Cow position:chr16:5654967-5655404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:1-477
               
               
               Cow position:chr16:1565883-1565397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-477
               
               
               Cow position:chr16:20969009-20968520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 202

               
               
               Conread position:1-477
               
               
               Cow position:chr16:42734834-42734352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:1-481
               
               
               Cow position:chr16:16230102-16230595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 322

               
               
               Conread position:1-519
               
               
               Cow position:chr16:6647100-6647634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 253

               
               
               Conread position:1-648
               
               
               Cow position:chr16:5633519-5632874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-675
               
               
               Cow position:chr16:3331700-3332395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:1-678
               
               
               Cow position:chr16:194116-193444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 52

               
               
               Conread position:1-678
               
               
               Cow position:chr16:416690-417386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:1-678
               
               
               Cow position:chr16:4462536-4461820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 326

               
               
               Conread position:1-678
               
               
               Cow position:chr16:7466403-7467104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr16:12161489-12160789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 172

               
               
               Conread position:1-678
               
               
               Cow position:chr16:26653467-26654154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:1-678
               
               
               Cow position:chr16:31586907-31586209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:1-678
               
               
               Cow position:chr16:48103881-48104576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:1-681
               
               
               Cow position:chr16:41033093-41033793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 321

               
               
               Conread position:1-688
               
               
               Cow position:chr16:25455672-25454961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 186

               
               
               Conread position:1-689
               
               
               Cow position:chr16:10440033-10440739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 172

               
               
               Conread position:1-689
               
               
               Cow position:chr16:10966420-10965746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr16:15494250-15494958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:1-689
               
               
               Cow position:chr16:23985100-23985813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr16:25259911-25260624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 328

               
               
               Conread position:1-689
               
               
               Cow position:chr16:25443666-25444377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:1-689
               
               
               Cow position:chr16:26665506-26666204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 239

               
               
               Conread position:1-689
               
               
               Cow position:chr16:27731592-27730881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr16:41164969-41164271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 172

               
               
               Conread position:1-689
               
               
               Cow position:chr16:43895473-43894762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr16:52526021-52526733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr16:25343766-25344483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:1-693
               
               
               Cow position:chr16:37443728-37443031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:1-693
               
               
               Cow position:chr16:37479071-37478356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-696
               
               
               Cow position:chr16:29035687-29036384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:1-699
               
               
               Cow position:chr16:39615041-39615735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:1-702
               
               
               Cow position:chr16:25262418-25263128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:1-728
               
               
               Cow position:chr16:34505487-34506237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 342

               
               
               Conread position:2-487
               
               
               Cow position:chr16:6298704-6298224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:2-724
               
               
               Cow position:chr16:19066310-19066994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:3-471
               
               
               Cow position:chr16:7083431-7083922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 333

               
               
               Conread position:3-477
               
               
               Cow position:chr16:36240948-36241414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):391, 45

               
               
               Conread position:3-478
               
               
               Cow position:chr16:18495953-18495471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:3-541
               
               
               Cow position:chr16:51419017-51418472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:3-660
               
               
               Cow position:chr16:24621906-24621224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-677
               
               
               Cow position:chr16:28168526-28167828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr16:5526309-5525604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr16:11744332-11745041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr16:23876732-23876040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr16:46554232-46554922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 48

               
               
               Conread position:3-689
               
               
               Cow position:chr16:47403175-47403882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr16:28194508-28193795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 250

               
               
               Conread position:3-715
               
               
               Cow position:chr16:17111064-17111779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 105

               
               
               Conread position:4-478
               
               
               Cow position:chr16:41564177-41564619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:4-669
               
               
               Cow position:chr16:29157450-29158104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 168

               
               
               Conread position:9-402
               
               
               Cow position:chr16:22381052-22381444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 91

               
               
               Conread position:14-443
               
               
               Cow position:chr16:49386818-49387263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:17-396
               
               
               Cow position:chr16:36164569-36164952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 178

               
               
               Conread position:17-559
               
               
               Cow position:chr16:26424127-26423578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:17-559
               
               
               Cow position:chr16:52627180-52627728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:17-600
               
               
               Cow position:chr16:47475826-47476410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:17-681
               
               
               Cow position:chr16:41684487-41683810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:17-693
               
               
               Cow position:chr16:6945062-6945765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 203

               
               
               Conread position:17-706
               
               
               Cow position:chr16:16220203-16220899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 132

               
               
               Conread position:18-678
               
               
               Cow position:chr16:47772074-47772751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:19-603
               
               
               Cow position:chr16:5663601-5664203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 155

               
               
               Conread position:29-401
               
               
               Cow position:chr16:1958816-1958445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:38-494
               
               
               Cow position:chr16:18358940-18359393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:40-666
               
               
               Cow position:chr16:22852835-22853464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 153

               
               
               Conread position:45-434
               
               
               Cow position:chr16:39364793-39364407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:45-485
               
               
               Cow position:chr16:32778804-32778362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:302
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:45-595
               
               
               Cow position:chr16:19784501-19785036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:353
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:45-628
               
               
               Cow position:chr16:7647837-7648412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 49

               
               
               Conread position:45-729
               
               
               Cow position:chr16:27980262-27979580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:54-430
               
               
               Cow position:chr16:15420580-15420948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:54-666
               
               
               Cow position:chr16:49254386-49253761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:54-678
               
               
               Cow position:chr16:14620433-14619790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:54-707
               
               
               Cow position:chr16:34207736-34208382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:59-703
               
               
               Cow position:chr16:15548756-15549367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:60-478
               
               
               Cow position:chr16:16960998-16960585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:60-714
               
               
               Cow position:chr16:16031747-16032423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 262

               
               
               Conread position:61-702
               
               
               Cow position:chr16:43646687-43647300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:62-677
               
               
               Cow position:chr16:1651221-1651848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:67-607
               
               
               Cow position:chr16:25742617-25743161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:67-689
               
               
               Cow position:chr16:13602770-13602137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:68-477
               
               
               Cow position:chr16:5591165-5591577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:68-500
               
               
               Cow position:chr16:6267084-6266654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 179

               
               
               Conread position:69-476
               
               
               Cow position:chr16:38533288-38532868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:69-656
               
               
               Cow position:chr16:10799014-10799622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:70-678
               
               
               Cow position:chr16:17141271-17141896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:71-689
               
               
               Cow position:chr16:13539561-13538924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 237

               
               
               Conread position:71-689
               
               
               Cow position:chr16:24210528-24209898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 217

               
               
               Conread position:72-699
               
               
               Cow position:chr16:9610828-9610216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:76-641
               
               
               Cow position:chr16:54431442-54432029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 232

               
               
               Conread position:95-494
               
               
               Cow position:chr16:52891214-52891624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:101-689
               
               
               Cow position:chr16:19886925-19887521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:104-396
               
               
               Cow position:chr16:23789992-23790281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:104-672
               
               
               Cow position:chr16:33921838-33921261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:108-693
               
               
               Cow position:chr16:16711232-16710666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:369
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:118-659
               
               
               Cow position:chr16:42117679-42118224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 48

               
               
               Conread position:119-678
               
               
               Cow position:chr16:53611717-53612294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 205

               
               
               Conread position:121-689
               
               
               Cow position:chr16:4755944-4756525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 131

               
               
               Conread position:124-644
               
               
               Cow position:chr16:36652331-36652845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:124-693
               
               
               Cow position:chr16:18695046-18694467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:125-693
               
               
               Cow position:chr16:45817186-45816611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:126-689
               
               
               Cow position:chr16:23064948-23065503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:147-669
               
               
               Cow position:chr16:36238404-36238938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:165-622
               
               
               Cow position:chr16:54175368-54175832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):233, 19

               
               
               Conread position:166-450
               
               
               Cow position:chr16:26499455-26499757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:168-689
               
               
               Cow position:chr16:16150783-16150248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 149

               
               
               Conread position:168-693
               
               
               Cow position:chr16:2233738-2233221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 10

               
               
               Conread position:177-689
               
               
               Cow position:chr16:34475-35000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:179-477
               
               
               Cow position:chr16:49463602-49463299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:181-678
               
               
               Cow position:chr16:11053977-11054482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:339
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):206, 55

               
               
               Conread position:190-689
               
               
               Cow position:chr16:12650917-12651428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 113

               
               
               Conread position:202-675
               
               
               Cow position:chr16:53990963-53991442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):196, 115

               
               
               Conread position:208-477
               
               
               Cow position:chr16:23097159-23096885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 109

               
               
               Conread position:208-477
               
               
               Cow position:chr16:23098346-23098620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):186, 109

               
               
               Conread position:225-478
               
               
               Cow position:chr16:42175879-42176145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:225-689
               
               
               Cow position:chr16:37145999-37146477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 92

               
               
               Conread position:229-678
               
               
               Cow position:chr16:657988-658451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:236-585
               
               
               Cow position:chr16:2229406-2229766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):158, 65

               
               
               Conread position:236-623
               
               
               Cow position:chr16:32604186-32604578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 80

               
               
               Conread position:251-602
               
               
               Cow position:chr16:37807444-37807781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 151

               
               
               Conread position:251-678
               
               
               Cow position:chr16:36792596-36793011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 52

               
               
               Conread position:253-689
               
               
               Cow position:chr16:21189308-21189758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 64

               
               
               Conread position:255-639
               
               
               Cow position:chr16:42131928-42132325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:265-669
               
               
               Cow position:chr16:15178751-15179164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 67

               
               
               Conread position:273-467
               
               
               Cow position:chr16:48695864-48696058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:274-678
               
               
               Cow position:chr16:42863494-42863092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:284-600
               
               
               Cow position:chr16:14068385-14068076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:287-693
               
               
               Cow position:chr16:42080524-42080109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:304-627
               
               
               Cow position:chr16:37532884-37533220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 273

               
               
               Conread position:307-660
               
               
               Cow position:chr16:9416452-9416101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:316-669
               
               
               Cow position:chr16:43744460-43744107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:324-669
               
               
               Cow position:chr16:32838475-32838840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:325-689
               
               
               Cow position:chr16:12175955-12175565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:326-677
               
               
               Cow position:chr16:24738586-24738947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:333-693
               
               
               Cow position:chr16:24988590-24988212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-696
               
               
               Cow position:chr16:4973395-4973018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 216

               
               
               Conread position:333-707
               
               
               Cow position:chr16:54286681-54287068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 231

               
               
               Conread position:334-678
               
               
               Cow position:chr16:45550277-45550636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:338-709
               
               
               Cow position:chr16:30052082-30052472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:340-687
               
               
               Cow position:chr16:28206974-28206613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 246

               
               
               Conread position:341-689
               
               
               Cow position:chr16:43563257-43562895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 245

               
               
               Conread position:347-641
               
               
               Cow position:chr16:28066198-28066512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 186

               
               
               Conread position:347-689
               
               
               Cow position:chr16:54180212-54179864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 184

               
               
               Conread position:365-707
               
               
               Cow position:chr16:10569017-10569363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 216

               
               
               Conread position:374-632
               
               
               Cow position:chr16:7354974-7354716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:386-693
               
               
               Cow position:chr16:26316897-26317216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:394-677
               
               
               Cow position:chr16:46529128-46528835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:397-678
               
               
               Cow position:chr16:27593625-27593331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:405-689
               
               
               Cow position:chr16:44189680-44189388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 150

               
               
               Conread position:1-401
               
               
               Cow position:chr17:41412200-41412599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:1-451
               
               
               Cow position:chr17:18197227-18197684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 220

               
               
               Conread position:1-626
               
               
               Cow position:chr17:5999132-5998492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:421
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 160

               
               
               Conread position:1-657
               
               
               Cow position:chr17:24311200-24311866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 53

               
               
               Conread position:1-675
               
               
               Cow position:chr17:732138-731443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 328

               
               
               Conread position:1-678
               
               
               Cow position:chr17:20694555-20695258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:1-688
               
               
               Cow position:chr17:4062687-4063399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 326

               
               
               Conread position:1-688
               
               
               Cow position:chr17:22562503-22563204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 271

               
               
               Conread position:1-689
               
               
               Cow position:chr17:6070892-6071595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-689
               
               
               Cow position:chr17:6262218-6262916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 130

               
               
               Conread position:1-689
               
               
               Cow position:chr17:15853078-15853794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr17:20085421-20084753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:1-689
               
               
               Cow position:chr17:24291994-24292695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-693
               
               
               Cow position:chr17:3314456-3315146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 200

               
               
               Conread position:1-693
               
               
               Cow position:chr17:17132708-17133409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:1-707
               
               
               Cow position:chr17:3550894-3550168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:3-396
               
               
               Cow position:chr17:1705759-1706158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:3-455
               
               
               Cow position:chr17:5307379-5306913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr17:8211011-8211501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 324

               
               
               Conread position:3-480
               
               
               Cow position:chr17:28025720-28025230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:3-663
               
               
               Cow position:chr17:2264545-2265231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-663
               
               
               Cow position:chr17:27792423-27791740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-675
               
               
               Cow position:chr17:1655394-1654714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 251

               
               
               Conread position:3-678
               
               
               Cow position:chr17:8204286-8204997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 238

               
               
               Conread position:3-678
               
               
               Cow position:chr17:14242184-14242880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-688
               
               
               Cow position:chr17:1882626-1883307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 117

               
               
               Conread position:3-689
               
               
               Cow position:chr17:15709633-15708933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:3-689
               
               
               Cow position:chr17:15808331-15809047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr17:29825605-29824901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr17:43990837-43991548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 198

               
               
               Conread position:3-696
               
               
               Cow position:chr17:6122138-6122850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:8-639
               
               
               Cow position:chr17:10799577-10798937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:8-681
               
               
               Cow position:chr17:3327485-3328184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:8-689
               
               
               Cow position:chr17:4481516-4480822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 203

               
               
               Conread position:8-689
               
               
               Cow position:chr17:15140975-15140279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:9-509
               
               
               Cow position:chr17:23040733-23041228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 45

               
               
               Conread position:9-612
               
               
               Cow position:chr17:2582645-2583271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:9-689
               
               
               Cow position:chr17:24027631-24026923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 336

               
               
               Conread position:12-478
               
               
               Cow position:chr17:30375593-30376064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 154

               
               
               Conread position:17-396
               
               
               Cow position:chr17:44402726-44403100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:17-423
               
               
               Cow position:chr17:760162-760561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:17-699
               
               
               Cow position:chr17:36000323-35999643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:22-689
               
               
               Cow position:chr17:15373782-15374465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 304

               
               
               Conread position:42-677
               
               
               Cow position:chr17:39838267-39837611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:418
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:45-395
               
               
               Cow position:chr17:3646939-3646590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:45-446
               
               
               Cow position:chr17:17530581-17530997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 100

               
               
               Conread position:45-707
               
               
               Cow position:chr17:13707153-13707818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 252

               
               
               Conread position:45-707
               
               
               Cow position:chr17:34567200-34567877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 151

               
               
               Conread position:48-464
               
               
               Cow position:chr17:19789640-19790059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 78

               
               
               Conread position:54-707
               
               
               Cow position:chr17:19406902-19406221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 6

               
               
               Conread position:57-431
               
               
               Cow position:chr17:27482795-27483179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 160

               
               
               Conread position:60-646
               
               
               Cow position:chr17:15191709-15191126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:390
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:64-663
               
               
               Cow position:chr17:29075901-29075314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:64-690
               
               
               Cow position:chr17:41918649-41919247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 68

               
               
               Conread position:67-678
               
               
               Cow position:chr17:6080935-6081556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:81-627
               
               
               Cow position:chr17:4162013-4161455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 130

               
               
               Conread position:83-678
               
               
               Cow position:chr17:26346831-26346240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 100

               
               
               Conread position:94-562
               
               
               Cow position:chr17:38947547-38948011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:96-693
               
               
               Cow position:chr17:20390222-20390839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:100-680
               
               
               Cow position:chr17:33935387-33934786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 227

               
               
               Conread position:103-624
               
               
               Cow position:chr17:14871146-14871668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 28

               
               
               Conread position:114-689
               
               
               Cow position:chr17:183619-184207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 186

               
               
               Conread position:119-689
               
               
               Cow position:chr17:40810225-40810811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 200

               
               
               Conread position:124-706
               
               
               Cow position:chr17:2838512-2839116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 194

               
               
               Conread position:135-455
               
               
               Cow position:chr17:11189513-11189840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:154-689
               
               
               Cow position:chr17:19215886-19215335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:157-674
               
               
               Cow position:chr17:15718856-15719389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 147

               
               
               Conread position:166-477
               
               
               Cow position:chr17:14005911-14006230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):193, 27

               
               
               Conread position:168-689
               
               
               Cow position:chr17:33791634-33792143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:344
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):220, 15

               
               
               Conread position:172-673
               
               
               Cow position:chr17:9073678-9074195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:184-689
               
               
               Cow position:chr17:39913937-39913425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 42

               
               
               Conread position:187-550
               
               
               Cow position:chr17:42383537-42383161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 147

               
               
               Conread position:194-681
               
               
               Cow position:chr17:18100879-18101365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:204-477
               
               
               Cow position:chr17:12674885-12674607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):190, 113

               
               
               Conread position:211-566
               
               
               Cow position:chr17:17088018-17087656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):171, 16

               
               
               Conread position:211-568
               
               
               Cow position:chr17:5546812-5546437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):160, 106

               
               
               Conread position:224-689
               
               
               Cow position:chr17:138194-138668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 93

               
               
               Conread position:225-451
               
               
               Cow position:chr17:31311661-31311437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:231-690
               
               
               Cow position:chr17:21770268-21770741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 21

               
               
               Conread position:237-477
               
               
               Cow position:chr17:3709535-3709290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 67

               
               
               Conread position:242-722
               
               
               Cow position:chr17:27977721-27978203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 22

               
               
               Conread position:248-437
               
               
               Cow position:chr17:21185538-21185344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:251-689
               
               
               Cow position:chr17:1969760-1970211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:251-723
               
               
               Cow position:chr17:12133387-12132907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:336
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):143, 64

               
               
               Conread position:253-669
               
               
               Cow position:chr17:41479580-41479158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:265-673
               
               
               Cow position:chr17:1457758-1457338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:297-689
               
               
               Cow position:chr17:18722225-18721818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):101, 37

               
               
               Conread position:304-576
               
               
               Cow position:chr17:9745613-9745900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:316-707
               
               
               Cow position:chr17:10286185-10285774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:317-689
               
               
               Cow position:chr17:16118775-16118399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 124

               
               
               Conread position:319-678
               
               
               Cow position:chr17:5043913-5043542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:333-681
               
               
               Cow position:chr17:11775540-11775188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:386-660
               
               
               Cow position:chr17:8994314-8994601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:409-689
               
               
               Cow position:chr17:38917257-38916968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:412-623
               
               
               Cow position:chr17:29820909-29821131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:412-689
               
               
               Cow position:chr17:44641696-44641410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:412-693
               
               
               Cow position:chr17:15325461-15325171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):64, 125

               
               
               Conread position:1-396
               
               
               Cow position:chr18:54026374-54026787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 339

               
               
               Conread position:1-452
               
               
               Cow position:chr18:9356304-9355850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:1-455
               
               
               Cow position:chr18:23702509-23702042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 308

               
               
               Conread position:1-457
               
               
               Cow position:chr18:30847583-30847153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:1-473
               
               
               Cow position:chr18:44403397-44403869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:1-478
               
               
               Cow position:chr18:45399736-45400219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:1-539
               
               
               Cow position:chr18:20691616-20691088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:1-674
               
               
               Cow position:chr18:8883723-8884406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:1-678
               
               
               Cow position:chr18:23801596-23802297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr18:25922966-25923660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 205

               
               
               Conread position:1-678
               
               
               Cow position:chr18:29864032-29863330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-688
               
               
               Cow position:chr18:17322980-17323662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr18:36775850-36776560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 212

               
               
               Conread position:1-707
               
               
               Cow position:chr18:14046857-14047566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:1-722
               
               
               Cow position:chr18:37491384-37492119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:2-556
               
               
               Cow position:chr18:44181405-44180858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):390, 51

               
               
               Conread position:2-676
               
               
               Cow position:chr18:31381638-31382318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:3-402
               
               
               Cow position:chr18:51344680-51345085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-448
               
               
               Cow position:chr18:16081101-16081560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-451
               
               
               Cow position:chr18:16558280-16558728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:3-477
               
               
               Cow position:chr18:18216084-18216572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-477
               
               
               Cow position:chr18:26244002-26243518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 209

               
               
               Conread position:3-509
               
               
               Cow position:chr18:33087475-33088001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:3-539
               
               
               Cow position:chr18:16275143-16274601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:3-632
               
               
               Cow position:chr18:56426858-56426237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:3-641
               
               
               Cow position:chr18:10221606-10222268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 322

               
               
               Conread position:3-678
               
               
               Cow position:chr18:35295751-35296442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:3-689
               
               
               Cow position:chr18:5535570-5536255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 50

               
               
               Conread position:3-689
               
               
               Cow position:chr18:24619006-24619712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr18:32165353-32164648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr18:32437526-32436818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:3-689
               
               
               Cow position:chr18:47744326-47745036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr18:16464285-16463578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-696
               
               
               Cow position:chr18:22182953-22182249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:9-510
               
               
               Cow position:chr18:1932389-1931877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 75

               
               
               Conread position:9-689
               
               
               Cow position:chr18:22681379-22682069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 193

               
               
               Conread position:11-655
               
               
               Cow position:chr18:16870867-16871522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 34

               
               
               Conread position:16-677
               
               
               Cow position:chr18:14422865-14423538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 168

               
               
               Conread position:17-392
               
               
               Cow position:chr18:16151102-16151470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 205

               
               
               Conread position:18-641
               
               
               Cow position:chr18:969282-969926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:18-678
               
               
               Cow position:chr18:24452395-24453084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:18-678
               
               
               Cow position:chr18:26549365-26550035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 138

               
               
               Conread position:18-678
               
               
               Cow position:chr18:36455263-36455942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:18-693
               
               
               Cow position:chr18:6882640-6881967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:446
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:18-696
               
               
               Cow position:chr18:603870-603174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:20-609
               
               
               Cow position:chr18:17943134-17943740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 306

               
               
               Conread position:25-623
               
               
               Cow position:chr18:20288284-20287680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:386
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 216

               
               
               Conread position:26-689
               
               
               Cow position:chr18:11869088-11869770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:29-689
               
               
               Cow position:chr18:52630655-52629975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 295

               
               
               Conread position:45-452
               
               
               Cow position:chr18:43030355-43030760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:45-678
               
               
               Cow position:chr18:12248317-12248961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 301

               
               
               Conread position:45-681
               
               
               Cow position:chr18:17455364-17454736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 87

               
               
               Conread position:49-567
               
               
               Cow position:chr18:5994146-5994656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:330
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:53-693
               
               
               Cow position:chr18:27539061-27539720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:54-698
               
               
               Cow position:chr18:15494705-15494089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 25

               
               
               Conread position:59-472
               
               
               Cow position:chr18:26649439-26649847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:59-611
               
               
               Cow position:chr18:11272210-11271636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 263

               
               
               Conread position:60-452
               
               
               Cow position:chr18:19270136-19270526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:62-707
               
               
               Cow position:chr18:39411486-39412138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:64-652
               
               
               Cow position:chr18:4953385-4953984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:66-689
               
               
               Cow position:chr18:19355163-19355796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:68-500
               
               
               Cow position:chr18:13965319-13964875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:70-693
               
               
               Cow position:chr18:39812987-39812349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:80-689
               
               
               Cow position:chr18:13509378-13508778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:85-387
               
               
               Cow position:chr18:51273451-51273156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:88-689
               
               
               Cow position:chr18:52573778-52574398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 249

               
               
               Conread position:88-693
               
               
               Cow position:chr18:24713307-24712699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 126

               
               
               Conread position:95-678
               
               
               Cow position:chr18:21810683-21811254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:98-396
               
               
               Cow position:chr18:1145494-1145790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:102-693
               
               
               Cow position:chr18:13198579-13199173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:374
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:109-708
               
               
               Cow position:chr18:29014746-29014161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 23

               
               
               Conread position:124-678
               
               
               Cow position:chr18:12290807-12291370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:135-689
               
               
               Cow position:chr18:9981334-9981903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:135-733
               
               
               Cow position:chr18:48390635-48391245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:147-673
               
               
               Cow position:chr18:16391475-16390947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:354
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:148-689
               
               
               Cow position:chr18:51602939-51602382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:149-676
               
               
               Cow position:chr18:41358067-41358601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:357
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:149-689
               
               
               Cow position:chr18:51697375-51697929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 173

               
               
               Conread position:150-689
               
               
               Cow position:chr18:29767180-29767712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:363
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:150-709
               
               
               Cow position:chr18:35056756-35057333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 168

               
               
               Conread position:166-402
               
               
               Cow position:chr18:40193755-40193988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:166-693
               
               
               Cow position:chr18:25354269-25354805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 22

               
               
               Conread position:175-478
               
               
               Cow position:chr18:21796884-21797193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):214, 148

               
               
               Conread position:186-494
               
               
               Cow position:chr18:18854238-18854545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):208, 22

               
               
               Conread position:187-629
               
               
               Cow position:chr18:19403767-19403316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 125

               
               
               Conread position:190-689
               
               
               Cow position:chr18:24038073-24037563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 127

               
               
               Conread position:192-477
               
               
               Cow position:chr18:33522028-33522318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):195, 123

               
               
               Conread position:197-394
               
               
               Cow position:chr18:40079693-40079500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 87

               
               
               Conread position:204-681
               
               
               Cow position:chr18:29074698-29075170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):180, 109

               
               
               Conread position:212-450
               
               
               Cow position:chr18:1582938-1582696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):182, 105

               
               
               Conread position:215-711
               
               
               Cow position:chr18:40343028-40342530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 69

               
               
               Conread position:236-430
               
               
               Cow position:chr18:15486885-15486690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 79

               
               
               Conread position:239-678
               
               
               Cow position:chr18:36123014-36122572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:240-603
               
               
               Cow position:chr18:51308444-51308824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 291

               
               
               Conread position:249-693
               
               
               Cow position:chr18:25199612-25200046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:306
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:250-689
               
               
               Cow position:chr18:36648233-36648688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):137, 67

               
               
               Conread position:251-478
               
               
               Cow position:chr18:14800598-14800828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):140, 51

               
               
               Conread position:264-631
               
               
               Cow position:chr18:15853252-15853620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:270-666
               
               
               Cow position:chr18:2038437-2038829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 11

               
               
               Conread position:270-729
               
               
               Cow position:chr18:17997779-17997311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 29

               
               
               Conread position:275-647
               
               
               Cow position:chr18:22211154-22211520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:283-693
               
               
               Cow position:chr18:24211800-24212225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:285-568
               
               
               Cow position:chr18:36343044-36343331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:291-716
               
               
               Cow position:chr18:48528984-48529423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:306-645
               
               
               Cow position:chr18:36605331-36605681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:323-736
               
               
               Cow position:chr18:14478987-14479421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 281

               
               
               Conread position:332-677
               
               
               Cow position:chr18:41124808-41124454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:333-669
               
               
               Cow position:chr18:45616700-45617054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 251

               
               
               Conread position:337-707
               
               
               Cow position:chr18:47999814-47999429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:338-659
               
               
               Cow position:chr18:20270499-20270840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 200

               
               
               Conread position:351-686
               
               
               Cow position:chr18:28962971-28963317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:357-708
               
               
               Cow position:chr18:51663110-51663479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 176

               
               
               Conread position:358-678
               
               
               Cow position:chr18:28268972-28268645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:385-675
               
               
               Cow position:chr18:33893524-33893816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:386-696
               
               
               Cow position:chr18:43285335-43285015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 194

               
               
               Conread position:392-689
               
               
               Cow position:chr18:55554227-55554534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:399-669
               
               
               Cow position:chr18:17335745-17335470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 176

               
               
               Conread position:399-693
               
               
               Cow position:chr18:28210148-28209864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 165

               
               
               Conread position:1-605
               
               
               Cow position:chr19:55694129-55693528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:416
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:1-630
               
               
               Cow position:chr19:45334174-45334821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:412
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:1-660
               
               
               Cow position:chr19:7490678-7491360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 308

               
               
               Conread position:1-675
               
               
               Cow position:chr19:32719391-32720074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:438
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:1-689
               
               
               Cow position:chr19:40913-41622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 272

               
               
               Conread position:1-689
               
               
               Cow position:chr19:3176054-3176750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:1-689
               
               
               Cow position:chr19:4388160-4388872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:1-689
               
               
               Cow position:chr19:12775703-12776399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:1-689
               
               
               Cow position:chr19:29088366-29089039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 52

               
               
               Conread position:1-689
               
               
               Cow position:chr19:39182959-39182251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 324

               
               
               Conread position:1-689
               
               
               Cow position:chr19:40017000-40016297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 205

               
               
               Conread position:1-689
               
               
               Cow position:chr19:40885166-40884464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:1-693
               
               
               Cow position:chr19:33875995-33876710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 328

               
               
               Conread position:1-696
               
               
               Cow position:chr19:5781938-5781238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:1-716
               
               
               Cow position:chr19:38559708-38558975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 186

               
               
               Conread position:2-437
               
               
               Cow position:chr19:40037658-40038081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:2-707
               
               
               Cow position:chr19:18359723-18359028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 143

               
               
               Conread position:3-477
               
               
               Cow position:chr19:20107323-20107806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 227

               
               
               Conread position:3-539
               
               
               Cow position:chr19:474916-474354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-565
               
               
               Cow position:chr19:15445283-15444695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-587
               
               
               Cow position:chr19:52148964-52148361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-614
               
               
               Cow position:chr19:890616-889980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 310

               
               
               Conread position:3-689
               
               
               Cow position:chr19:165541-164843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr19:7481355-7480645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr19:20610914-20611623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 268

               
               
               Conread position:3-693
               
               
               Cow position:chr19:7344615-7345328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 260

               
               
               Conread position:3-696
               
               
               Cow position:chr19:28595957-28596672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:4-693
               
               
               Cow position:chr19:1292931-1293644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:4-710
               
               
               Cow position:chr19:33640657-33641383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:9-383
               
               
               Cow position:chr19:28741293-28740922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:9-473
               
               
               Cow position:chr19:3586554-3586085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:9-477
               
               
               Cow position:chr19:16318021-16317541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 133

               
               
               Conread position:9-693
               
               
               Cow position:chr19:30430134-30430833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:10-611
               
               
               Cow position:chr19:28642326-28642929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:17-452
               
               
               Cow position:chr19:33905665-33906099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:17-675
               
               
               Cow position:chr19:30560762-30561427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:17-678
               
               
               Cow position:chr19:1151278-1151942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:18-689
               
               
               Cow position:chr19:33944166-33944856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 304

               
               
               Conread position:18-693
               
               
               Cow position:chr19:38811015-38811677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:20-708
               
               
               Cow position:chr19:3113915-3114623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:25-392
               
               
               Cow position:chr19:3088718-3088345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:38-452
               
               
               Cow position:chr19:28791047-28790651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:41-673
               
               
               Cow position:chr19:2261804-2261168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:42-687
               
               
               Cow position:chr19:8207381-8206710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:45-351
               
               
               Cow position:chr19:39990554-39990254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:45-605
               
               
               Cow position:chr19:44755415-44754888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 35

               
               
               Conread position:45-677
               
               
               Cow position:chr19:29970688-29970041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:412
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:45-678
               
               
               Cow position:chr19:24672867-24672214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:45-726
               
               
               Cow position:chr19:5110701-5110006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:51-386
               
               
               Cow position:chr19:40794249-40793915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:54-464
               
               
               Cow position:chr19:6439830-6440249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:59-666
               
               
               Cow position:chr19:15871989-15871366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:63-492
               
               
               Cow position:chr19:35078030-35077585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:64-678
               
               
               Cow position:chr19:45150208-45149592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 117

               
               
               Conread position:72-449
               
               
               Cow position:chr19:24597108-24596747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):230, 56

               
               
               Conread position:73-653
               
               
               Cow position:chr19:39695918-39696521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 249

               
               
               Conread position:73-689
               
               
               Cow position:chr19:19388488-19389123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:93-678
               
               
               Cow position:chr19:39944212-39943617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:95-478
               
               
               Cow position:chr19:47189773-47189382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 226

               
               
               Conread position:95-623
               
               
               Cow position:chr19:39885532-39885007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:333
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:120-693
               
               
               Cow position:chr19:43148288-43148875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:121-688
               
               
               Cow position:chr19:4552389-4551837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 137

               
               
               Conread position:121-689
               
               
               Cow position:chr19:16479159-16478578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 197

               
               
               Conread position:136-693
               
               
               Cow position:chr19:55842716-55843298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:147-472
               
               
               Cow position:chr19:6981806-6981486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:149-678
               
               
               Cow position:chr19:542880-542343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:359
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:165-396
               
               
               Cow position:chr19:36149710-36149932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:169-689
               
               
               Cow position:chr19:28801803-28801283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 7

               
               
               Conread position:178-396
               
               
               Cow position:chr19:51287639-51287423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:184-637
               
               
               Cow position:chr19:10194412-10194876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 120

               
               
               Conread position:188-689
               
               
               Cow position:chr19:47099656-47100151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 111

               
               
               Conread position:189-490
               
               
               Cow position:chr19:42256668-42256358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):196, 110

               
               
               Conread position:194-394
               
               
               Cow position:chr19:24437236-24437031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:195-675
               
               
               Cow position:chr19:23604632-23604152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:204-457
               
               
               Cow position:chr19:16109418-16109673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):190, 97

               
               
               Conread position:209-455
               
               
               Cow position:chr19:354374-354128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):187, 14

               
               
               Conread position:211-680
               
               
               Cow position:chr19:4840644-4840173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:212-728
               
               
               Cow position:chr19:743901-743371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:352
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:213-688
               
               
               Cow position:chr19:776315-776801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 90

               
               
               Conread position:217-656
               
               
               Cow position:chr19:29629031-29628590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:298
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):181, 10

               
               
               Conread position:224-585
               
               
               Cow position:chr19:43948318-43947960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):168, 24

               
               
               Conread position:264-678
               
               
               Cow position:chr19:42465841-42466273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:269-607
               
               
               Cow position:chr19:33649514-33649159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 45

               
               
               Conread position:270-689
               
               
               Cow position:chr19:33527703-33528136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:270-689
               
               
               Cow position:chr19:55377751-55378184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:272-687
               
               
               Cow position:chr19:28449673-28450112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:283-693
               
               
               Cow position:chr19:5901896-5902321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:307-716
               
               
               Cow position:chr19:37843042-37842632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:308-651
               
               
               Cow position:chr19:6173637-6173281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:316-657
               
               
               Cow position:chr19:1354382-1354023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:316-689
               
               
               Cow position:chr19:48533629-48534017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:328-689
               
               
               Cow position:chr19:10613139-10613517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 252

               
               
               Conread position:333-677
               
               
               Cow position:chr19:5176781-5176426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:337-672
               
               
               Cow position:chr19:24230422-24230774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):57, 208

               
               
               Conread position:347-693
               
               
               Cow position:chr19:29393272-29393636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 242

               
               
               Conread position:361-693
               
               
               Cow position:chr19:40247721-40248071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 219

               
               
               Conread position:374-678
               
               
               Cow position:chr19:39344890-39344588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:374-693
               
               
               Cow position:chr19:36708417-36708091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:375-698
               
               
               Cow position:chr19:15154958-15154623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:383-689
               
               
               Cow position:chr19:30037937-30037618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:386-704
               
               
               Cow position:chr19:19405981-19406317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):23, 188

               
               
               Conread position:395-648
               
               
               Cow position:chr19:7293256-7292990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:427-689
               
               
               Cow position:chr19:30516009-30515738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:436-681
               
               
               Cow position:chr19:5384444-5384699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:493-678
               
               
               Cow position:chr19:26487352-26487533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:1-476
               
               
               Cow position:chr2:56754457-56753997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:317
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:1-477
               
               
               Cow position:chr2:44477633-44478117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 302

               
               
               Conread position:1-478
               
               
               Cow position:chr2:44058005-44057521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 39

               
               
               Conread position:1-486
               
               
               Cow position:chr2:5594631-5595112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:1-543
               
               
               Cow position:chr2:42330823-42330277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 16

               
               
               Conread position:1-559
               
               
               Cow position:chr2:50406015-50406581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:369
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:1-577
               
               
               Cow position:chr2:31417121-31417719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 329

               
               
               Conread position:1-615
               
               
               Cow position:chr2:35358035-35358670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:1-623
               
               
               Cow position:chr2:5887733-5887103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:1-627
               
               
               Cow position:chr2:24437174-24436531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 215

               
               
               Conread position:1-638
               
               
               Cow position:chr2:43765952-43765298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:1-663
               
               
               Cow position:chr2:65936200-65935538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1-669
               
               
               Cow position:chr2:22134653-22133980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 6

               
               
               Conread position:1-677
               
               
               Cow position:chr2:3769423-3768745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:1-678
               
               
               Cow position:chr2:779398-778726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 312

               
               
               Conread position:1-678
               
               
               Cow position:chr2:1107133-1106447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:1-678
               
               
               Cow position:chr2:33090304-33090997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:1-678
               
               
               Cow position:chr2:41156215-41156903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:1-678
               
               
               Cow position:chr2:49632810-49633485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:1-678
               
               
               Cow position:chr2:74859999-74860682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:1-688
               
               
               Cow position:chr2:8120726-8121428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:1-688
               
               
               Cow position:chr2:43106357-43107066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:1-689
               
               
               Cow position:chr2:1197468-1196799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 6

               
               
               Conread position:1-689
               
               
               Cow position:chr2:1692934-1693641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 262

               
               
               Conread position:1-689
               
               
               Cow position:chr2:4918045-4917336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 277

               
               
               Conread position:1-689
               
               
               Cow position:chr2:6964953-6965659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 262

               
               
               Conread position:1-689
               
               
               Cow position:chr2:7369697-7370400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 227

               
               
               Conread position:1-689
               
               
               Cow position:chr2:10184205-10183495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:1-689
               
               
               Cow position:chr2:19013383-19014088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:1-689
               
               
               Cow position:chr2:21982731-21982023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 53

               
               
               Conread position:1-689
               
               
               Cow position:chr2:36982675-36983385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 294

               
               
               Conread position:1-689
               
               
               Cow position:chr2:39676744-39676013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 330

               
               
               Conread position:1-689
               
               
               Cow position:chr2:45937690-45936995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:1-689
               
               
               Cow position:chr2:46183512-46182802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 303

               
               
               Conread position:1-689
               
               
               Cow position:chr2:50079585-50080297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 340

               
               
               Conread position:1-689
               
               
               Cow position:chr2:55482167-55481486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 44

               
               
               Conread position:1-689
               
               
               Cow position:chr2:72932059-72931352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 207

               
               
               Conread position:1-689
               
               
               Cow position:chr2:78748325-78749024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:1-693
               
               
               Cow position:chr2:25886532-25885811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr2:28795867-28796584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr2:32433313-32432624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 194

               
               
               Conread position:1-693
               
               
               Cow position:chr2:42668680-42667968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:1-709
               
               
               Cow position:chr2:38083092-38082374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 217

               
               
               Conread position:1-721
               
               
               Cow position:chr2:33584754-33584048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:2-416
               
               
               Cow position:chr2:56113267-56113691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:2-678
               
               
               Cow position:chr2:34572484-34573187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 215

               
               
               Conread position:3-390
               
               
               Cow position:chr2:194678-194289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 53

               
               
               Conread position:3-464
               
               
               Cow position:chr2:9957042-9956571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-475
               
               
               Cow position:chr2:41047224-41046742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr2:2210152-2209665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:3-477
               
               
               Cow position:chr2:2213976-2213489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:3-477
               
               
               Cow position:chr2:2456474-2455986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr2:60617668-60617181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 323

               
               
               Conread position:3-478
               
               
               Cow position:chr2:5285485-5285005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 193

               
               
               Conread position:3-548
               
               
               Cow position:chr2:14091705-14092269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:3-615
               
               
               Cow position:chr2:32862596-32861967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:3-657
               
               
               Cow position:chr2:19766857-19766222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 232

               
               
               Conread position:3-663
               
               
               Cow position:chr2:14208807-14208130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:3-665
               
               
               Cow position:chr2:29968010-29968697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-666
               
               
               Cow position:chr2:4834573-4833889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-674
               
               
               Cow position:chr2:25384497-25385181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:3-678
               
               
               Cow position:chr2:11501008-11501663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:3-681
               
               
               Cow position:chr2:33081727-33081049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:3-688
               
               
               Cow position:chr2:32390639-32391351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr2:2182244-2181538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:3-689
               
               
               Cow position:chr2:3622551-3623254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:3-689
               
               
               Cow position:chr2:4181090-4180384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr2:5996864-5997562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr2:6004809-6004103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 267

               
               
               Conread position:3-689
               
               
               Cow position:chr2:9963042-9962337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr2:10609750-10609055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 45

               
               
               Conread position:3-689
               
               
               Cow position:chr2:16327887-16327191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:3-689
               
               
               Cow position:chr2:24687707-24688413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr2:26905279-26905980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr2:34501156-34501865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr2:39118627-39119335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 144

               
               
               Conread position:3-689
               
               
               Cow position:chr2:39423957-39424661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-689
               
               
               Cow position:chr2:43757613-43756909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:3-689
               
               
               Cow position:chr2:44093392-44094100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr2:49629351-49630059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 150

               
               
               Conread position:3-689
               
               
               Cow position:chr2:50060972-50060263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 308

               
               
               Conread position:3-689
               
               
               Cow position:chr2:52498051-52497342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr2:54739512-54740206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr2:8528718-8529410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:3-693
               
               
               Cow position:chr2:31408317-31407607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr2:52620802-52621513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr2:53541966-53542677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr2:57337984-57338693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 290

               
               
               Conread position:3-696
               
               
               Cow position:chr2:5115958-5116688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-696
               
               
               Cow position:chr2:62999949-63000665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-704
               
               
               Cow position:chr2:77858363-77859085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 174

               
               
               Conread position:3-712
               
               
               Cow position:chr2:26079566-26080276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:4-477
               
               
               Cow position:chr2:24927439-24927925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 269

               
               
               Conread position:4-693
               
               
               Cow position:chr2:432817-432106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:5-679
               
               
               Cow position:chr2:25768047-25768727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:5-681
               
               
               Cow position:chr2:16306110-16306800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:7-439
               
               
               Cow position:chr2:62816184-62816614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:7-478
               
               
               Cow position:chr2:38594144-38593656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 136

               
               
               Conread position:9-681
               
               
               Cow position:chr2:40539558-40540248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:9-689
               
               
               Cow position:chr2:59411709-59411020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 303

               
               
               Conread position:17-478
               
               
               Cow position:chr2:63519992-63520467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 243

               
               
               Conread position:17-491
               
               
               Cow position:chr2:1207941-1207458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:17-678
               
               
               Cow position:chr2:6540056-6540737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:18-459
               
               
               Cow position:chr2:20896294-20895858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:18-586
               
               
               Cow position:chr2:52160824-52160256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:18-669
               
               
               Cow position:chr2:28654643-28655311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:18-692
               
               
               Cow position:chr2:43876770-43877456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 239

               
               
               Conread position:22-478
               
               
               Cow position:chr2:33868792-33869244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:25-659
               
               
               Cow position:chr2:46940237-46940890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 209

               
               
               Conread position:25-669
               
               
               Cow position:chr2:49452448-49451773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 214

               
               
               Conread position:34-689
               
               
               Cow position:chr2:1845012-1844343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:35-477
               
               
               Cow position:chr2:56264840-56265268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:45-660
               
               
               Cow position:chr2:22991079-22990461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 276

               
               
               Conread position:49-470
               
               
               Cow position:chr2:12802316-12801888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:54-394
               
               
               Cow position:chr2:31455510-31455842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:54-678
               
               
               Cow position:chr2:62675922-62675280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 172

               
               
               Conread position:59-477
               
               
               Cow position:chr2:30379095-30379524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 263

               
               
               Conread position:59-616
               
               
               Cow position:chr2:1660543-1661099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:364
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:59-678
               
               
               Cow position:chr2:40455301-40455928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 126

               
               
               Conread position:61-680
               
               
               Cow position:chr2:46255583-46256228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 6

               
               
               Conread position:63-538
               
               
               Cow position:chr2:1652990-1653459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):249, 36

               
               
               Conread position:67-402
               
               
               Cow position:chr2:43356591-43356258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:67-651
               
               
               Cow position:chr2:50325286-50325898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:403
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):48, 271

               
               
               Conread position:68-478
               
               
               Cow position:chr2:46725846-46726241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:69-501
               
               
               Cow position:chr2:31706375-31705941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 157

               
               
               Conread position:69-678
               
               
               Cow position:chr2:8778265-8778871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 144

               
               
               Conread position:69-693
               
               
               Cow position:chr2:67188725-67188107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:73-485
               
               
               Cow position:chr2:8347329-8346908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:74-690
               
               
               Cow position:chr2:53662613-53663249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 107

               
               
               Conread position:75-693
               
               
               Cow position:chr2:11725476-11726115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:76-592
               
               
               Cow position:chr2:5298756-5299286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:76-689
               
               
               Cow position:chr2:10739740-10739115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:86-696
               
               
               Cow position:chr2:64791700-64791082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:93-689
               
               
               Cow position:chr2:74238548-74237930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 232

               
               
               Conread position:95-395
               
               
               Cow position:chr2:7429635-7429335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:95-689
               
               
               Cow position:chr2:23643246-23642633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 213

               
               
               Conread position:95-689
               
               
               Cow position:chr2:45918639-45918039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:97-567
               
               
               Cow position:chr2:56774904-56774442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 35

               
               
               Conread position:97-708
               
               
               Cow position:chr2:52653082-52653703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:98-689
               
               
               Cow position:chr2:15964552-15963942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:100-457
               
               
               Cow position:chr2:1369044-1369401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:101-689
               
               
               Cow position:chr2:38512761-38512154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 207

               
               
               Conread position:115-709
               
               
               Cow position:chr2:76827314-76827906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:120-473
               
               
               Cow position:chr2:36579314-36578955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:120-678
               
               
               Cow position:chr2:25590421-25590991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 198

               
               
               Conread position:134-693
               
               
               Cow position:chr2:64766718-64766181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 30

               
               
               Conread position:135-477
               
               
               Cow position:chr2:12202965-12203313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:140-477
               
               
               Cow position:chr2:64447888-64447550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 24

               
               
               Conread position:140-676
               
               
               Cow position:chr2:1867442-1866901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:140-694
               
               
               Cow position:chr2:50126902-50126372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:365
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):259, 15

               
               
               Conread position:142-478
               
               
               Cow position:chr2:3624942-3624592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:146-441
               
               
               Cow position:chr2:82649787-82649500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):241, 22

               
               
               Conread position:147-641
               
               
               Cow position:chr2:68381245-68381755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:147-672
               
               
               Cow position:chr2:62051762-62051223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:147-681
               
               
               Cow position:chr2:4673741-4673232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:367
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):240, 17

               
               
               Conread position:148-694
               
               
               Cow position:chr2:4741541-4742104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 157

               
               
               Conread position:148-695
               
               
               Cow position:chr2:63068701-63068142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 167

               
               
               Conread position:157-434
               
               
               Cow position:chr2:38043601-38043880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):239, 158

               
               
               Conread position:168-678
               
               
               Cow position:chr2:45494205-45493721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 24

               
               
               Conread position:170-669
               
               
               Cow position:chr2:10197063-10196564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 11

               
               
               Conread position:171-392
               
               
               Cow position:chr2:46255316-46255530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:172-689
               
               
               Cow position:chr2:80162799-80162272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 59

               
               
               Conread position:172-707
               
               
               Cow position:chr2:12183981-12184523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 6

               
               
               Conread position:182-563
               
               
               Cow position:chr2:8701983-8702347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):212, 132

               
               
               Conread position:184-689
               
               
               Cow position:chr2:37324100-37324619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:188-636
               
               
               Cow position:chr2:6750559-6750102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:194-659
               
               
               Cow position:chr2:54346340-54346809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 124

               
               
               Conread position:198-681
               
               
               Cow position:chr2:71520365-71519886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 49

               
               
               Conread position:202-689
               
               
               Cow position:chr2:31644466-31644970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 115

               
               
               Conread position:205-678
               
               
               Cow position:chr2:20857333-20856870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):184, 95

               
               
               Conread position:207-689
               
               
               Cow position:chr2:24876946-24876460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 77

               
               
               Conread position:209-651
               
               
               Cow position:chr2:1992679-1993131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):193, 107

               
               
               Conread position:209-689
               
               
               Cow position:chr2:2410600-2410108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 12

               
               
               Conread position:209-693
               
               
               Cow position:chr2:47182508-47182012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 108

               
               
               Conread position:212-674
               
               
               Cow position:chr2:53183009-53183487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 91

               
               
               Conread position:212-693
               
               
               Cow position:chr2:11814307-11813812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 105

               
               
               Conread position:214-676
               
               
               Cow position:chr2:62247347-62246864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):186, 118

               
               
               Conread position:231-706
               
               
               Cow position:chr2:85691719-85692200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:233-689
               
               
               Cow position:chr2:17808271-17807825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 84

               
               
               Conread position:237-698
               
               
               Cow position:chr2:54715710-54716177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 80

               
               
               Conread position:238-677
               
               
               Cow position:chr2:73780543-73780097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:238-679
               
               
               Cow position:chr2:833979-834430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:247-471
               
               
               Cow position:chr2:4931877-4931649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):140, 73

               
               
               Conread position:248-696
               
               
               Cow position:chr2:20351677-20351219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 69

               
               
               Conread position:251-461
               
               
               Cow position:chr2:13553503-13553286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 204

               
               
               Conread position:251-674
               
               
               Cow position:chr2:36883384-36882951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:254-689
               
               
               Cow position:chr2:9713952-9714403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:254-707
               
               
               Cow position:chr2:83197971-83198421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:255-689
               
               
               Cow position:chr2:37395665-37396113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 62

               
               
               Conread position:264-450
               
               
               Cow position:chr2:28335312-28335502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:264-656
               
               
               Cow position:chr2:74469763-74469355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:264-663
               
               
               Cow position:chr2:45538233-45537817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:264-671
               
               
               Cow position:chr2:60946091-60946510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):133, 39

               
               
               Conread position:265-689
               
               
               Cow position:chr2:70669005-70669443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:270-693
               
               
               Cow position:chr2:18351099-18350660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:271-696
               
               
               Cow position:chr2:72647041-72646602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:272-570
               
               
               Cow position:chr2:872302-871985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:272-669
               
               
               Cow position:chr2:66272209-66272621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 196

               
               
               Conread position:273-689
               
               
               Cow position:chr2:17684956-17685383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:284-688
               
               
               Cow position:chr2:2096493-2096075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:289-689
               
               
               Cow position:chr2:70499306-70498898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:301-689
               
               
               Cow position:chr2:10123719-10123316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:304-693
               
               
               Cow position:chr2:4699074-4699472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:306-715
               
               
               Cow position:chr2:62436195-62435764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:326-431
               
               
               Cow position:chr2:61506040-61505933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:326-678
               
               
               Cow position:chr2:23492155-23492517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:327-634
               
               
               Cow position:chr2:83748913-83748593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 258

               
               
               Conread position:327-713
               
               
               Cow position:chr2:46497612-46498012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:332-711
               
               
               Cow position:chr2:78645809-78645439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 154

               
               
               Conread position:333-689
               
               
               Cow position:chr2:70259489-70259862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr2:75408000-75408358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:339-689
               
               
               Cow position:chr2:47612849-47612483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 238

               
               
               Conread position:357-716
               
               
               Cow position:chr2:1957304-1957662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 192

               
               
               Conread position:374-689
               
               
               Cow position:chr2:86052113-86052442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 195

               
               
               Conread position:375-693
               
               
               Cow position:chr2:4238132-4237804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):103, 206

               
               
               Conread position:385-623
               
               
               Cow position:chr2:55682388-55682138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 186

               
               
               Conread position:386-630
               
               
               Cow position:chr2:39935347-39935604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:386-689
               
               
               Cow position:chr2:25978479-25978793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:386-689
               
               
               Cow position:chr2:72940330-72940021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):24, 192

               
               
               Conread position:404-693
               
               
               Cow position:chr2:34619283-34619582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 168

               
               
               Conread position:409-689
               
               
               Cow position:chr2:38486820-38487109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:415-665
               
               
               Cow position:chr2:33398932-33398692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 57

               
               
               Conread position:421-716
               
               
               Cow position:chr2:64577868-64577570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:427-689
               
               
               Cow position:chr2:72016277-72016548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:428-689
               
               
               Cow position:chr2:13005784-13006044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:437-662
               
               
               Cow position:chr2:56113775-56114007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 50

               
               
               Conread position:455-716
               
               
               Cow position:chr2:79907806-79907545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:465-675
               
               
               Cow position:chr2:43209648-43209861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 108

               
               
               Conread position:476-678
               
               
               Cow position:chr2:11898907-11899107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:1-477
               
               
               Cow position:chr20:10867243-10866767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:1-565
               
               
               Cow position:chr20:20185295-20185868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:1-567
               
               
               Cow position:chr20:10495532-10496117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:1-649
               
               
               Cow position:chr20:23801433-23802105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 336

               
               
               Conread position:1-678
               
               
               Cow position:chr20:27876024-27876724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 280

               
               
               Conread position:1-678
               
               
               Cow position:chr20:28293860-28294555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 230

               
               
               Conread position:1-689
               
               
               Cow position:chr20:10922377-10921671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:1-689
               
               
               Cow position:chr20:23467122-23466398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:1-689
               
               
               Cow position:chr20:25846079-25845371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 186

               
               
               Conread position:1-689
               
               
               Cow position:chr20:27345421-27344732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr20:28444806-28444095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 210

               
               
               Conread position:1-689
               
               
               Cow position:chr20:37956276-37955602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:1-709
               
               
               Cow position:chr20:10493750-10494474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:3-477
               
               
               Cow position:chr20:18355774-18356262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-585
               
               
               Cow position:chr20:2653686-2654279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 37

               
               
               Conread position:3-639
               
               
               Cow position:chr20:18969270-18969913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 250

               
               
               Conread position:3-678
               
               
               Cow position:chr20:35160036-35159342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 322

               
               
               Conread position:3-687
               
               
               Cow position:chr20:8971348-8970643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 306

               
               
               Conread position:3-689
               
               
               Cow position:chr20:3809226-3808521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr20:6136445-6135739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr20:16105975-16106700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 320

               
               
               Conread position:3-689
               
               
               Cow position:chr20:21719109-21719809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 314

               
               
               Conread position:3-689
               
               
               Cow position:chr20:24568726-24568017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr20:30385703-30384993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr20:39233774-39234483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 241

               
               
               Conread position:3-693
               
               
               Cow position:chr20:16559998-16559275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-693
               
               
               Cow position:chr20:35108644-35107930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-693
               
               
               Cow position:chr20:38956681-38957395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-696
               
               
               Cow position:chr20:20440408-20439710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-696
               
               
               Cow position:chr20:30430815-30431530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 322

               
               
               Conread position:6-467
               
               
               Cow position:chr20:5270619-5270149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:8-669
               
               
               Cow position:chr20:34459759-34459078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:8-689
               
               
               Cow position:chr20:42085083-42085785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:9-646
               
               
               Cow position:chr20:23899938-23900570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:9-677
               
               
               Cow position:chr20:924944-924275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 64

               
               
               Conread position:9-689
               
               
               Cow position:chr20:24541975-24542678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 317

               
               
               Conread position:12-605
               
               
               Cow position:chr20:5225999-5225397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 47

               
               
               Conread position:17-423
               
               
               Cow position:chr20:3307406-3307810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:17-478
               
               
               Cow position:chr20:22696487-22696023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:17-630
               
               
               Cow position:chr20:4772256-4772885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:17-656
               
               
               Cow position:chr20:13788690-13789331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 7

               
               
               Conread position:17-689
               
               
               Cow position:chr20:2180194-2179538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:17-689
               
               
               Cow position:chr20:14721815-14721126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:18-689
               
               
               Cow position:chr20:14926084-14925390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 308

               
               
               Conread position:18-693
               
               
               Cow position:chr20:13507000-13506304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 294

               
               
               Conread position:28-678
               
               
               Cow position:chr20:28561312-28560642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 294

               
               
               Conread position:30-663
               
               
               Cow position:chr20:14867808-14867159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 206

               
               
               Conread position:45-689
               
               
               Cow position:chr20:22208196-22208873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 292

               
               
               Conread position:54-450
               
               
               Cow position:chr20:13576116-13575716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 6

               
               
               Conread position:67-398
               
               
               Cow position:chr20:13062462-13062783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:94-633
               
               
               Cow position:chr20:32085814-32085267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:354
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:96-675
               
               
               Cow position:chr20:37169587-37168988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:114-715
               
               
               Cow position:chr20:1534880-1534249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:119-689
               
               
               Cow position:chr20:22061510-22060925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:124-552
               
               
               Cow position:chr20:38747696-38747270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:125-639
               
               
               Cow position:chr20:19669782-19669259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 77

               
               
               Conread position:135-568
               
               
               Cow position:chr20:22186447-22186000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:147-673
               
               
               Cow position:chr20:741705-742245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:361
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:148-689
               
               
               Cow position:chr20:16515055-16515575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:149-478
               
               
               Cow position:chr20:31566193-31565864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:150-390
               
               
               Cow position:chr20:42867466-42867700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 100

               
               
               Conread position:157-452
               
               
               Cow position:chr20:8294607-8294898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:166-678
               
               
               Cow position:chr20:34967706-34968225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 126

               
               
               Conread position:166-693
               
               
               Cow position:chr20:17658514-17657975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 10

               
               
               Conread position:169-689
               
               
               Cow position:chr20:16944240-16944750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):227, 13

               
               
               Conread position:178-678
               
               
               Cow position:chr20:9338753-9339267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 134

               
               
               Conread position:188-693
               
               
               Cow position:chr20:2017062-2016555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 76

               
               
               Conread position:193-689
               
               
               Cow position:chr20:33598222-33597712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 110

               
               
               Conread position:194-671
               
               
               Cow position:chr20:42055387-42054903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:325
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:194-689
               
               
               Cow position:chr20:31785629-31785121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:207-394
               
               
               Cow position:chr20:16159914-16159730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:219-657
               
               
               Cow position:chr20:16189974-16189519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:226-689
               
               
               Cow position:chr20:19306610-19306133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 77

               
               
               Conread position:229-674
               
               
               Cow position:chr20:14930033-14930482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 39

               
               
               Conread position:237-689
               
               
               Cow position:chr20:24400090-24399613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 360

               
               
               Conread position:251-693
               
               
               Cow position:chr20:7569164-7568707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:308
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:251-693
               
               
               Cow position:chr20:7593652-7593194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:252-707
               
               
               Cow position:chr20:21677251-21677712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):144, 47

               
               
               Conread position:254-693
               
               
               Cow position:chr20:753241-753698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 63

               
               
               Conread position:266-478
               
               
               Cow position:chr20:2681663-2681877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:269-494
               
               
               Cow position:chr20:13661701-13661485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:271-689
               
               
               Cow position:chr20:5086517-5086085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:285-689
               
               
               Cow position:chr20:30688709-30689128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:308-673
               
               
               Cow position:chr20:31220165-31220536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:318-657
               
               
               Cow position:chr20:23393146-23392790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:323-675
               
               
               Cow position:chr20:33296077-33295709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:338-693
               
               
               Cow position:chr20:18489831-18490206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 363

               
               
               Conread position:347-677
               
               
               Cow position:chr20:5352147-5351820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:351-541
               
               
               Cow position:chr20:15745916-15746110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:362-633
               
               
               Cow position:chr20:40007747-40007457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:367-689
               
               
               Cow position:chr20:30578776-30579115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 213

               
               
               Conread position:374-678
               
               
               Cow position:chr20:25987689-25987995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:375-669
               
               
               Cow position:chr20:21836921-21837233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 159

               
               
               Conread position:386-689
               
               
               Cow position:chr20:15800022-15799708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 188

               
               
               Conread position:394-689
               
               
               Cow position:chr20:31504277-31504582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):7, 188

               
               
               Conread position:402-704
               
               
               Cow position:chr20:34231900-34231590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):74, 179

               
               
               Conread position:404-681
               
               
               Cow position:chr20:9996490-9996780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 155

               
               
               Conread position:406-666
               
               
               Cow position:chr20:6259333-6259061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:406-689
               
               
               Cow position:chr20:30146395-30146687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:427-709
               
               
               Cow position:chr20:38654874-38654586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:474-693
               
               
               Cow position:chr20:8350061-8349843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:1-401
               
               
               Cow position:chr21:33947887-33948280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:1-475
               
               
               Cow position:chr21:47375789-47376260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:1-478
               
               
               Cow position:chr21:27031899-27032362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 6

               
               
               Conread position:1-487
               
               
               Cow position:chr21:4717595-4718080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:1-572
               
               
               Cow position:chr21:13285579-13286140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 123

               
               
               Conread position:1-627
               
               
               Cow position:chr21:1285598-1284956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:1-675
               
               
               Cow position:chr21:24948760-24949461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 333

               
               
               Conread position:1-678
               
               
               Cow position:chr21:21918137-21918845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 336

               
               
               Conread position:1-678
               
               
               Cow position:chr21:26401113-26400411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr21:47943605-47944313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:1-689
               
               
               Cow position:chr21:148801-149509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr21:21171652-21170963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:1-689
               
               
               Cow position:chr21:26700011-26699304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:1-689
               
               
               Cow position:chr21:30564409-30565116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:1-689
               
               
               Cow position:chr21:32895554-32894859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:1-689
               
               
               Cow position:chr21:40268730-40268048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:1-692
               
               
               Cow position:chr21:2665485-2664801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 335

               
               
               Conread position:1-706
               
               
               Cow position:chr21:13112739-13112014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 312

               
               
               Conread position:1-714
               
               
               Cow position:chr21:79353-78638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:1-717
               
               
               Cow position:chr21:24083695-24082973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:3-477
               
               
               Cow position:chr21:44531857-44532325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:3-477
               
               
               Cow position:chr21:47976663-47977151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr21:6966811-6966110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr21:37373882-37374573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 321

               
               
               Conread position:3-689
               
               
               Cow position:chr21:41797067-41796359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-690
               
               
               Cow position:chr21:31251649-31252353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 556

               
               
               Conread position:3-693
               
               
               Cow position:chr21:5631318-5630651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:3-693
               
               
               Cow position:chr21:42916449-42917160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:3-696
               
               
               Cow position:chr21:36375644-36376359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:9-401
               
               
               Cow position:chr21:2538488-2538092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:9-607
               
               
               Cow position:chr21:30872422-30873026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 135

               
               
               Conread position:9-689
               
               
               Cow position:chr21:27148892-27148190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:10-693
               
               
               Cow position:chr21:46291042-46291746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:10-722
               
               
               Cow position:chr21:4864665-4863948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:11-396
               
               
               Cow position:chr21:2288748-2289138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:12-628
               
               
               Cow position:chr21:12910803-12911442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:413
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:14-715
               
               
               Cow position:chr21:4406582-4407274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:443
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):153, 39

               
               
               Conread position:17-428
               
               
               Cow position:chr21:42861484-42861075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:17-662
               
               
               Cow position:chr21:11328227-11327582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:18-689
               
               
               Cow position:chr21:27126055-27125356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 583

               
               
               Conread position:22-689
               
               
               Cow position:chr21:4938334-4938985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:34-396
               
               
               Cow position:chr21:21051415-21051782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:39-678
               
               
               Cow position:chr21:5010782-5010115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 287

               
               
               Conread position:40-678
               
               
               Cow position:chr21:1766816-1766166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:45-473
               
               
               Cow position:chr21:4138357-4137923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 71

               
               
               Conread position:45-485
               
               
               Cow position:chr21:21786371-21786799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:48-427
               
               
               Cow position:chr21:47096169-47096561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 71

               
               
               Conread position:49-689
               
               
               Cow position:chr21:24827413-24826772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:53-434
               
               
               Cow position:chr21:2388263-2388659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:54-477
               
               
               Cow position:chr21:3922973-3923407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-678
               
               
               Cow position:chr21:40082262-40082891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 187

               
               
               Conread position:54-689
               
               
               Cow position:chr21:4899256-4898602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:56-478
               
               
               Cow position:chr21:15942802-15943211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:67-622
               
               
               Cow position:chr21:38242161-38241618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:69-457
               
               
               Cow position:chr21:14799574-14799176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:72-678
               
               
               Cow position:chr21:47361438-47360816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:73-689
               
               
               Cow position:chr21:2769110-2768481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 97

               
               
               Conread position:73-709
               
               
               Cow position:chr21:15924920-15925530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:402
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:74-457
               
               
               Cow position:chr21:44094487-44094108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:78-402
               
               
               Cow position:chr21:27082146-27081826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:79-554
               
               
               Cow position:chr21:30555354-30554871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:83-621
               
               
               Cow position:chr21:22197598-22197068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:351
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:86-447
               
               
               Cow position:chr21:23802912-23802554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:95-689
               
               
               Cow position:chr21:30967188-30966581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 40

               
               
               Conread position:96-689
               
               
               Cow position:chr21:11406127-11405518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 209

               
               
               Conread position:97-444
               
               
               Cow position:chr21:34551126-34550788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:100-696
               
               
               Cow position:chr21:39428157-39428771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 192

               
               
               Conread position:119-478
               
               
               Cow position:chr21:9850301-9850671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:119-723
               
               
               Cow position:chr21:27066822-27066207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:120-501
               
               
               Cow position:chr21:23340899-23340509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:131-678
               
               
               Cow position:chr21:30857752-30858316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:135-689
               
               
               Cow position:chr21:30056911-30056342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:135-693
               
               
               Cow position:chr21:35024174-35024730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 128

               
               
               Conread position:135-706
               
               
               Cow position:chr21:6864756-6864176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:140-478
               
               
               Cow position:chr21:47341001-47341355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:140-693
               
               
               Cow position:chr21:15247956-15247433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:142-508
               
               
               Cow position:chr21:34693672-34694033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:148-689
               
               
               Cow position:chr21:11508745-11509303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:149-477
               
               
               Cow position:chr21:15548097-15547767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:164-466
               
               
               Cow position:chr21:46336737-46337043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):230, 12

               
               
               Conread position:169-478
               
               
               Cow position:chr21:37355144-37354835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 151

               
               
               Conread position:169-693
               
               
               Cow position:chr21:26634399-26633862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 148

               
               
               Conread position:172-492
               
               
               Cow position:chr21:45163298-45162970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 298

               
               
               Conread position:182-651
               
               
               Cow position:chr21:47178202-47178673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):214, 58

               
               
               Conread position:189-689
               
               
               Cow position:chr21:39470917-39470402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 114

               
               
               Conread position:191-678
               
               
               Cow position:chr21:20578528-20578035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 126

               
               
               Conread position:192-437
               
               
               Cow position:chr21:14984955-14984704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:192-693
               
               
               Cow position:chr21:7048331-7047813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 125

               
               
               Conread position:207-549
               
               
               Cow position:chr21:12464449-12464797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:212-689
               
               
               Cow position:chr21:13162315-13162796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:318
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):172, 56

               
               
               Conread position:223-429
               
               
               Cow position:chr21:32830432-32830231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:223-689
               
               
               Cow position:chr21:44262086-44262566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 80

               
               
               Conread position:223-689
               
               
               Cow position:chr21:48292462-48291989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 94

               
               
               Conread position:224-669
               
               
               Cow position:chr21:35576719-35576261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):165, 93

               
               
               Conread position:224-678
               
               
               Cow position:chr21:32203124-32203593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 10

               
               
               Conread position:224-731
               
               
               Cow position:chr21:12099432-12099944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 60

               
               
               Conread position:225-693
               
               
               Cow position:chr21:26757845-26757356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 92

               
               
               Conread position:235-562
               
               
               Cow position:chr21:14762197-14761864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):219, 27

               
               
               Conread position:236-424
               
               
               Cow position:chr21:14620238-14620421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):170, 28

               
               
               Conread position:238-457
               
               
               Cow position:chr21:32300007-32300231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):151, 79

               
               
               Conread position:240-678
               
               
               Cow position:chr21:25814494-25814042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):154, 22

               
               
               Conread position:251-708
               
               
               Cow position:chr21:30312621-30313088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 7

               
               
               Conread position:258-689
               
               
               Cow position:chr21:48274282-48273835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:264-677
               
               
               Cow position:chr21:25628097-25628513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:269-641
               
               
               Cow position:chr21:17060990-17060612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 62

               
               
               Conread position:272-675
               
               
               Cow position:chr21:33358320-33357924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:288-678
               
               
               Cow position:chr21:4733582-4733178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:292-665
               
               
               Cow position:chr21:4097552-4097915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:303-661
               
               
               Cow position:chr21:30162244-30161875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:303-689
               
               
               Cow position:chr21:13274576-13274955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:316-543
               
               
               Cow position:chr21:23292354-23292112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:324-722
               
               
               Cow position:chr21:29909077-29908681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:339-678
               
               
               Cow position:chr21:46357723-46357383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:345-624
               
               
               Cow position:chr21:30882048-30882345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:347-693
               
               
               Cow position:chr21:30654578-30654936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 186

               
               
               Conread position:348-672
               
               
               Cow position:chr21:38907191-38907529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:357-707
               
               
               Cow position:chr21:46838259-46837911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:361-687
               
               
               Cow position:chr21:25521303-25520971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:365-678
               
               
               Cow position:chr21:20772872-20773194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:368-681
               
               
               Cow position:chr21:44862542-44862209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:368-693
               
               
               Cow position:chr21:33307007-33307333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:374-627
               
               
               Cow position:chr21:23501628-23501357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 172

               
               
               Conread position:375-707
               
               
               Cow position:chr21:39796536-39796876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):84, 196

               
               
               Conread position:383-689
               
               
               Cow position:chr21:34823221-34823538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:405-707
               
               
               Cow position:chr21:23784314-23784009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:463-678
               
               
               Cow position:chr21:15274478-15274695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:493-733
               
               
               Cow position:chr21:47926579-47926809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):85, 67

               
               
               Conread position:1-392
               
               
               Cow position:chr22:47180422-47180804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):45, 134

               
               
               Conread position:1-451
               
               
               Cow position:chr22:8768251-8768714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 181

               
               
               Conread position:1-477
               
               
               Cow position:chr22:10784212-10784682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:1-607
               
               
               Cow position:chr22:48272525-48271900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:1-655
               
               
               Cow position:chr22:532577-533250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:1-659
               
               
               Cow position:chr22:35904685-35904041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:1-663
               
               
               Cow position:chr22:8118761-8118098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:1-674
               
               
               Cow position:chr22:1026500-1027180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:1-675
               
               
               Cow position:chr22:24818275-24817584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:1-678
               
               
               Cow position:chr22:1324607-1325298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 318

               
               
               Conread position:1-678
               
               
               Cow position:chr22:1482894-1483593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 265

               
               
               Conread position:1-678
               
               
               Cow position:chr22:26105663-26104959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 326

               
               
               Conread position:1-678
               
               
               Cow position:chr22:28784599-28785299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr22:32020061-32019379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:1-678
               
               
               Cow position:chr22:36356550-36357237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 324

               
               
               Conread position:1-681
               
               
               Cow position:chr22:13208879-13209565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 160

               
               
               Conread position:1-689
               
               
               Cow position:chr22:1518548-1517853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 252

               
               
               Conread position:1-689
               
               
               Cow position:chr22:13767806-13768494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:1-689
               
               
               Cow position:chr22:18604327-18603622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr22:42993656-42994362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 321

               
               
               Conread position:1-693
               
               
               Cow position:chr22:15888296-15889007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:1-695
               
               
               Cow position:chr22:40372888-40373587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:1-696
               
               
               Cow position:chr22:41034210-41034906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:1-709
               
               
               Cow position:chr22:13722260-13721518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:1-712
               
               
               Cow position:chr22:14337926-14337231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:1-726
               
               
               Cow position:chr22:17326001-17325263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 173

               
               
               Conread position:2-675
               
               
               Cow position:chr22:46524157-46524848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:2-689
               
               
               Cow position:chr22:12729169-12728472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 73

               
               
               Conread position:3-385
               
               
               Cow position:chr22:15853920-15854321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:3-477
               
               
               Cow position:chr22:18196758-18197246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-477
               
               
               Cow position:chr22:30754740-30755212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:3-478
               
               
               Cow position:chr22:41963236-41962783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:3-586
               
               
               Cow position:chr22:20238352-20237744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-601
               
               
               Cow position:chr22:44100859-44100236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:3-646
               
               
               Cow position:chr22:5931603-5930937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:3-651
               
               
               Cow position:chr22:8487393-8486720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-675
               
               
               Cow position:chr22:10601354-10602032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:3-677
               
               
               Cow position:chr22:22410914-22411601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:3-689
               
               
               Cow position:chr22:696410-697121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr22:980771-981480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr22:3275866-3275168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:3-689
               
               
               Cow position:chr22:6514815-6514126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:3-689
               
               
               Cow position:chr22:10578004-10577299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr22:21193717-21193013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:3-689
               
               
               Cow position:chr22:25969156-25968471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 34

               
               
               Conread position:3-689
               
               
               Cow position:chr22:29854337-29855038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 306

               
               
               Conread position:3-689
               
               
               Cow position:chr22:30676244-30675538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr22:4943607-4944304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:3-693
               
               
               Cow position:chr22:8266951-8267654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:3-693
               
               
               Cow position:chr22:41169382-41170088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:3-693
               
               
               Cow position:chr22:45280429-45281143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-707
               
               
               Cow position:chr22:8647297-8646561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:4-689
               
               
               Cow position:chr22:539615-540323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:9-659
               
               
               Cow position:chr22:3297246-3296594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:18-606
               
               
               Cow position:chr22:2391042-2390429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 260

               
               
               Conread position:18-678
               
               
               Cow position:chr22:8338920-8339597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 221

               
               
               Conread position:25-477
               
               
               Cow position:chr22:22934277-22934743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 301

               
               
               Conread position:25-689
               
               
               Cow position:chr22:32337825-32338511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 287

               
               
               Conread position:29-641
               
               
               Cow position:chr22:10549238-10549876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 297

               
               
               Conread position:30-392
               
               
               Cow position:chr22:16693137-16693498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:34-644
               
               
               Cow position:chr22:40384418-40385018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 205

               
               
               Conread position:45-662
               
               
               Cow position:chr22:10722563-10721948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:48-475
               
               
               Cow position:chr22:8968556-8968136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:52-390
               
               
               Cow position:chr22:34655802-34655479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):90, 78

               
               
               Conread position:54-471
               
               
               Cow position:chr22:5625225-5624804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-678
               
               
               Cow position:chr22:36858999-36858356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr22:12869918-12869267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:54-703
               
               
               Cow position:chr22:3806153-3806826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:59-505
               
               
               Cow position:chr22:2716733-2716288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:60-457
               
               
               Cow position:chr22:19512687-19512289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:60-478
               
               
               Cow position:chr22:22029763-22030191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:60-670
               
               
               Cow position:chr22:14823110-14822487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:70-478
               
               
               Cow position:chr22:44653062-44653469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 169

               
               
               Conread position:72-689
               
               
               Cow position:chr22:2039874-2040515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:76-678
               
               
               Cow position:chr22:44381901-44381278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 246

               
               
               Conread position:77-621
               
               
               Cow position:chr22:28556252-28556817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 245

               
               
               Conread position:77-729
               
               
               Cow position:chr22:46582331-46581663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 186

               
               
               Conread position:79-472
               
               
               Cow position:chr22:27272856-27272462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):142, 52

               
               
               Conread position:81-689
               
               
               Cow position:chr22:7230497-7231116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 224

               
               
               Conread position:83-678
               
               
               Cow position:chr22:21755968-21756565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 175

               
               
               Conread position:94-478
               
               
               Cow position:chr22:3271531-3271140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 228

               
               
               Conread position:96-689
               
               
               Cow position:chr22:29396682-29397273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 204

               
               
               Conread position:100-626
               
               
               Cow position:chr22:7595315-7595847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:359
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:100-693
               
               
               Cow position:chr22:10562255-10562872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:103-665
               
               
               Cow position:chr22:15494999-15495554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:118-707
               
               
               Cow position:chr22:8259298-8258702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:407
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:119-477
               
               
               Cow position:chr22:8595405-8595037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 200

               
               
               Conread position:119-678
               
               
               Cow position:chr22:39465936-39465361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:120-689
               
               
               Cow position:chr22:14629778-14629194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:124-693
               
               
               Cow position:chr22:13546076-13545530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:135-693
               
               
               Cow position:chr22:51138-51706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 29

               
               
               Conread position:137-664
               
               
               Cow position:chr22:41841710-41841174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:339
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:139-555
               
               
               Cow position:chr22:20197526-20197937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:139-677
               
               
               Cow position:chr22:31131635-31132193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:373
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:139-678
               
               
               Cow position:chr22:5314862-5315420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 182

               
               
               Conread position:140-678
               
               
               Cow position:chr22:21956801-21957344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:142-689
               
               
               Cow position:chr22:46569465-46568900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:144-690
               
               
               Cow position:chr22:39473991-39473428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:365
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 174

               
               
               Conread position:148-440
               
               
               Cow position:chr22:32812925-32812627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:148-677
               
               
               Cow position:chr22:13866112-13865573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:149-688
               
               
               Cow position:chr22:28713495-28714050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 169

               
               
               Conread position:153-707
               
               
               Cow position:chr22:39132534-39133091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:157-689
               
               
               Cow position:chr22:15014051-15013500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:166-478
               
               
               Cow position:chr22:46440778-46440469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):220, 50

               
               
               Conread position:166-693
               
               
               Cow position:chr22:42500711-42500172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 151

               
               
               Conread position:178-689
               
               
               Cow position:chr22:35162987-35162469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 139

               
               
               Conread position:178-693
               
               
               Cow position:chr22:27534979-27534466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):151, 69

               
               
               Conread position:189-689
               
               
               Cow position:chr22:3714828-3714314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 128

               
               
               Conread position:204-689
               
               
               Cow position:chr22:22106737-22107232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:208-678
               
               
               Cow position:chr22:14156252-14155777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:218-689
               
               
               Cow position:chr22:42069402-42068931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):193, 114

               
               
               Conread position:218-693
               
               
               Cow position:chr22:12969695-12969210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:336
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:219-689
               
               
               Cow position:chr22:25725299-25724815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 84

               
               
               Conread position:222-477
               
               
               Cow position:chr22:1624559-1624820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):167, 95

               
               
               Conread position:224-501
               
               
               Cow position:chr22:11785356-11785071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):179, 93

               
               
               Conread position:229-693
               
               
               Cow position:chr22:20570327-20569847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:240-670
               
               
               Cow position:chr22:4248637-4248211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 29

               
               
               Conread position:251-708
               
               
               Cow position:chr22:37827401-37827845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):149, 49

               
               
               Conread position:253-678
               
               
               Cow position:chr22:13289617-13290038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 60

               
               
               Conread position:255-689
               
               
               Cow position:chr22:39902122-39902570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 48

               
               
               Conread position:257-693
               
               
               Cow position:chr22:530149-529698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:258-659
               
               
               Cow position:chr22:46449647-46449239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 139

               
               
               Conread position:264-675
               
               
               Cow position:chr22:30067749-30067334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):125, 53

               
               
               Conread position:281-693
               
               
               Cow position:chr22:36853065-36852642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:282-693
               
               
               Cow position:chr22:40720169-40719771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 7

               
               
               Conread position:283-689
               
               
               Cow position:chr22:41946938-41946527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:304-673
               
               
               Cow position:chr22:7301250-7301630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:309-696
               
               
               Cow position:chr22:12095576-12095189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 122

               
               
               Conread position:316-691
               
               
               Cow position:chr22:8900077-8900463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:317-693
               
               
               Cow position:chr22:13184620-13185002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:323-689
               
               
               Cow position:chr22:45893573-45893956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 210

               
               
               Conread position:326-714
               
               
               Cow position:chr22:38248125-38247737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:333-696
               
               
               Cow position:chr22:40829253-40828872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:340-689
               
               
               Cow position:chr22:41846748-41846376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 364

               
               
               Conread position:348-688
               
               
               Cow position:chr22:46586827-46587184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):48, 241

               
               
               Conread position:361-676
               
               
               Cow position:chr22:33437330-33437005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:363-669
               
               
               Cow position:chr22:25200997-25201305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:365-688
               
               
               Cow position:chr22:40775035-40775358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:390-689
               
               
               Cow position:chr22:26944330-26944020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 137

               
               
               Conread position:395-693
               
               
               Cow position:chr22:28997703-28997393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 188

               
               
               Conread position:465-678
               
               
               Cow position:chr22:44925363-44925146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):31, 182

               
               
               Conread position:1-478
               
               
               Cow position:chr23:1800114-1800597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:1-489
               
               
               Cow position:chr23:15179542-15180042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1-560
               
               
               Cow position:chr23:36028906-36028322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 218

               
               
               Conread position:1-621
               
               
               Cow position:chr23:15504488-15505108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:1-688
               
               
               Cow position:chr23:15350700-15351385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:1-689
               
               
               Cow position:chr23:4516014-4516723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 190

               
               
               Conread position:1-689
               
               
               Cow position:chr23:4891167-4891878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:1-689
               
               
               Cow position:chr23:14960476-14959769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:1-689
               
               
               Cow position:chr23:15216361-15215652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr23:22144827-22144127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:1-689
               
               
               Cow position:chr23:37200043-37199331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:3-449
               
               
               Cow position:chr23:7219955-7219510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:3-457
               
               
               Cow position:chr23:17242622-17243071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:3-559
               
               
               Cow position:chr23:943454-944036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-633
               
               
               Cow position:chr23:19316961-19317616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-651
               
               
               Cow position:chr23:4080618-4081291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-660
               
               
               Cow position:chr23:1249054-1248372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-681
               
               
               Cow position:chr23:2317075-2317740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:3-689
               
               
               Cow position:chr23:609208-609911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 45

               
               
               Conread position:3-689
               
               
               Cow position:chr23:3285237-3285941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr23:3417852-3417146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:3-689
               
               
               Cow position:chr23:14264824-14265529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 214

               
               
               Conread position:3-689
               
               
               Cow position:chr23:21009131-21008422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr23:21773436-21772728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 326

               
               
               Conread position:3-689
               
               
               Cow position:chr23:24119034-24119737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-696
               
               
               Cow position:chr23:2321466-2320755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 321

               
               
               Conread position:3-696
               
               
               Cow position:chr23:14971471-14970762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 321

               
               
               Conread position:3-704
               
               
               Cow position:chr23:16496792-16496065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:4-605
               
               
               Cow position:chr23:644239-643637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:8-494
               
               
               Cow position:chr23:4559078-4559562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:320
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):42, 142

               
               
               Conread position:9-688
               
               
               Cow position:chr23:3708884-3709586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 203

               
               
               Conread position:14-699
               
               
               Cow position:chr23:10422370-10421686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 53

               
               
               Conread position:18-449
               
               
               Cow position:chr23:16702244-16702682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:26-408
               
               
               Cow position:chr23:1011333-1010940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 322

               
               
               Conread position:41-605
               
               
               Cow position:chr23:25562963-25563540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 174

               
               
               Conread position:47-460
               
               
               Cow position:chr23:10979983-10980400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:59-693
               
               
               Cow position:chr23:4266082-4265429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 263

               
               
               Conread position:69-391
               
               
               Cow position:chr23:37228954-37228632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:76-501
               
               
               Cow position:chr23:35314843-35314403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:77-494
               
               
               Cow position:chr23:8099824-8100224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):317, 28

               
               
               Conread position:79-396
               
               
               Cow position:chr23:27755430-27755745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:83-559
               
               
               Cow position:chr23:31612535-31613036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:332
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:119-689
               
               
               Cow position:chr23:2720053-2720639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:124-424
               
               
               Cow position:chr23:1114693-1114993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:127-678
               
               
               Cow position:chr23:1338864-1338315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:137-661
               
               
               Cow position:chr23:40888060-40888597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:139-476
               
               
               Cow position:chr23:31647452-31647118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:142-579
               
               
               Cow position:chr23:22883718-22883281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:148-689
               
               
               Cow position:chr23:28084467-28083911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:148-689
               
               
               Cow position:chr23:41143067-41143623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:148-696
               
               
               Cow position:chr23:5396954-5396391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:150-689
               
               
               Cow position:chr23:11713039-11712485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 168

               
               
               Conread position:165-690
               
               
               Cow position:chr23:16367577-16368117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:189-554
               
               
               Cow position:chr23:3844369-3843987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):205, 114

               
               
               Conread position:190-689
               
               
               Cow position:chr23:4533034-4532515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 127

               
               
               Conread position:210-478
               
               
               Cow position:chr23:1552632-1552364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:212-491
               
               
               Cow position:chr23:2039744-2040025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:215-634
               
               
               Cow position:chr23:25593720-25594153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:225-477
               
               
               Cow position:chr23:35274586-35274843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):77, 207

               
               
               Conread position:225-693
               
               
               Cow position:chr23:36473073-36473547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:229-693
               
               
               Cow position:chr23:24516554-24517022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:234-675
               
               
               Cow position:chr23:33575151-33574700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):112, 83

               
               
               Conread position:240-678
               
               
               Cow position:chr23:30634875-30634421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 77

               
               
               Conread position:251-689
               
               
               Cow position:chr23:32008646-32008194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 66

               
               
               Conread position:252-689
               
               
               Cow position:chr23:10680102-10679651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 51

               
               
               Conread position:253-689
               
               
               Cow position:chr23:31703627-31704077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 64

               
               
               Conread position:254-689
               
               
               Cow position:chr23:2437446-2437002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):144, 66

               
               
               Conread position:254-689
               
               
               Cow position:chr23:3301589-3302037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 63

               
               
               Conread position:255-689
               
               
               Cow position:chr23:11172940-11172493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:257-476
               
               
               Cow position:chr23:14266799-14267014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:258-689
               
               
               Cow position:chr23:31605165-31605610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 59

               
               
               Conread position:259-703
               
               
               Cow position:chr23:16018270-16017799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:262-454
               
               
               Cow position:chr23:6666457-6666653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):134, 41

               
               
               Conread position:268-693
               
               
               Cow position:chr23:11386289-11385859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:276-650
               
               
               Cow position:chr23:670647-671036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:284-693
               
               
               Cow position:chr23:14216459-14216037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:286-689
               
               
               Cow position:chr23:28987115-28987525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:291-693
               
               
               Cow position:chr23:30166570-30166161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:307-666
               
               
               Cow position:chr23:38301949-38301582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 116

               
               
               Conread position:327-693
               
               
               Cow position:chr23:36676330-36675954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 133

               
               
               Conread position:333-678
               
               
               Cow position:chr23:14790293-14790657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):61, 247

               
               
               Conread position:336-602
               
               
               Cow position:chr23:16488503-16488762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 145

               
               
               Conread position:337-678
               
               
               Cow position:chr23:2367921-2368282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 254

               
               
               Conread position:363-728
               
               
               Cow position:chr23:7288676-7288328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:367-703
               
               
               Cow position:chr23:30959895-30960238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:368-678
               
               
               Cow position:chr23:7250244-7249925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 227

               
               
               Conread position:413-678
               
               
               Cow position:chr23:771594-771318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:421-689
               
               
               Cow position:chr23:24823110-24822843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:1-402
               
               
               Cow position:chr24:12239428-12239828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 69

               
               
               Conread position:1-455
               
               
               Cow position:chr24:12088766-12089231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:1-477
               
               
               Cow position:chr24:23093478-23092994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 307

               
               
               Conread position:1-477
               
               
               Cow position:chr24:23096216-23095732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 307

               
               
               Conread position:1-492
               
               
               Cow position:chr24:40460825-40460326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:1-525
               
               
               Cow position:chr24:16473527-16474056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 129

               
               
               Conread position:1-539
               
               
               Cow position:chr24:36712816-36713360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:1-660
               
               
               Cow position:chr24:18267922-18267245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:1-669
               
               
               Cow position:chr24:39680089-39680761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:1-678
               
               
               Cow position:chr24:14759446-14760158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 550

               
               
               Conread position:1-678
               
               
               Cow position:chr24:29189852-29190554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 341

               
               
               Conread position:1-678
               
               
               Cow position:chr24:32848730-32849405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:1-689
               
               
               Cow position:chr24:40467851-40467138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 324

               
               
               Conread position:1-693
               
               
               Cow position:chr24:9089507-9088827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 180

               
               
               Conread position:1-693
               
               
               Cow position:chr24:19184724-19185434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 196

               
               
               Conread position:1-707
               
               
               Cow position:chr24:5775552-5774832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:3-387
               
               
               Cow position:chr24:42587574-42587953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:3-472
               
               
               Cow position:chr24:21248380-21247897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-477
               
               
               Cow position:chr24:34373158-34373646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-586
               
               
               Cow position:chr24:12208348-12208955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 319

               
               
               Conread position:3-651
               
               
               Cow position:chr24:7064131-7064805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 324

               
               
               Conread position:3-658
               
               
               Cow position:chr24:208434-207759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-664
               
               
               Cow position:chr24:6667198-6666530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:3-678
               
               
               Cow position:chr24:12698450-12697750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-678
               
               
               Cow position:chr24:16081920-16081221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-678
               
               
               Cow position:chr24:41005051-41005744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:3-681
               
               
               Cow position:chr24:40150809-40150119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:463
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:3-688
               
               
               Cow position:chr24:17323260-17323968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 356

               
               
               Conread position:3-689
               
               
               Cow position:chr24:6326801-6326096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 195

               
               
               Conread position:3-689
               
               
               Cow position:chr24:6963416-6964125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr24:40551191-40551900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr24:14195295-14194569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:9-663
               
               
               Cow position:chr24:13190745-13191418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 312

               
               
               Conread position:10-485
               
               
               Cow position:chr24:8755477-8755949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:324
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:12-678
               
               
               Cow position:chr24:6463545-6464220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 69

               
               
               Conread position:17-476
               
               
               Cow position:chr24:26794380-26793919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:313
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:17-693
               
               
               Cow position:chr24:16208435-16207757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:464
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:18-477
               
               
               Cow position:chr24:37198440-37197975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 171

               
               
               Conread position:18-566
               
               
               Cow position:chr24:25024555-25025074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:364
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:35-670
               
               
               Cow position:chr24:41199338-41199980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:38-451
               
               
               Cow position:chr24:20325180-20324767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 153

               
               
               Conread position:54-455
               
               
               Cow position:chr24:25576459-25576072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 73

               
               
               Conread position:59-679
               
               
               Cow position:chr24:25648432-25647802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:59-693
               
               
               Cow position:chr24:3162095-3162750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 263

               
               
               Conread position:60-689
               
               
               Cow position:chr24:14740279-14740906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 114

               
               
               Conread position:62-535
               
               
               Cow position:chr24:19052701-19052215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:318
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:63-631
               
               
               Cow position:chr24:1295630-1295039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:70-478
               
               
               Cow position:chr24:37077229-37076824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:75-661
               
               
               Cow position:chr24:12669102-12669713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:81-678
               
               
               Cow position:chr24:36721102-36721710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:101-678
               
               
               Cow position:chr24:17031298-17030728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 13

               
               
               Conread position:107-678
               
               
               Cow position:chr24:12120279-12119696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 215

               
               
               Conread position:120-689
               
               
               Cow position:chr24:29084975-29084390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 199

               
               
               Conread position:120-727
               
               
               Cow position:chr24:38487097-38487720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:124-452
               
               
               Cow position:chr24:17299255-17298928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:124-689
               
               
               Cow position:chr24:3850290-3850870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:124-689
               
               
               Cow position:chr24:36037134-36036551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:125-568
               
               
               Cow position:chr24:42815044-42815509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 196

               
               
               Conread position:135-689
               
               
               Cow position:chr24:9072131-9071566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:136-689
               
               
               Cow position:chr24:14352058-14352627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 182

               
               
               Conread position:137-628
               
               
               Cow position:chr24:32824375-32823878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 28

               
               
               Conread position:148-457
               
               
               Cow position:chr24:22322784-22323097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:148-607
               
               
               Cow position:chr24:13177236-13176757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:317
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:149-678
               
               
               Cow position:chr24:27147835-27148371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:149-693
               
               
               Cow position:chr24:19674560-19675106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 47

               
               
               Conread position:166-692
               
               
               Cow position:chr24:17764866-17764322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:172-689
               
               
               Cow position:chr24:9545916-9546447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 131

               
               
               Conread position:173-570
               
               
               Cow position:chr24:5744456-5744867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:188-689
               
               
               Cow position:chr24:36028749-36028238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 14

               
               
               Conread position:194-688
               
               
               Cow position:chr24:33936695-33937203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 94

               
               
               Conread position:209-485
               
               
               Cow position:chr24:36886826-36887102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):185, 14

               
               
               Conread position:212-674
               
               
               Cow position:chr24:17366190-17365717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:212-678
               
               
               Cow position:chr24:32362061-32361579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 102

               
               
               Conread position:215-689
               
               
               Cow position:chr24:31842327-31842815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 88

               
               
               Conread position:228-704
               
               
               Cow position:chr24:25059869-25059377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:234-477
               
               
               Cow position:chr24:6036435-6036187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):168, 83

               
               
               Conread position:234-659
               
               
               Cow position:chr24:38003224-38002794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:237-677
               
               
               Cow position:chr24:29074672-29074223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 75

               
               
               Conread position:239-678
               
               
               Cow position:chr24:29370780-29370329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):133, 93

               
               
               Conread position:239-689
               
               
               Cow position:chr24:14745175-14745639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:312
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):109, 76

               
               
               Conread position:251-455
               
               
               Cow position:chr24:38813432-38813641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):136, 66

               
               
               Conread position:251-675
               
               
               Cow position:chr24:22820533-22820954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):138, 52

               
               
               Conread position:251-678
               
               
               Cow position:chr24:12147767-12147321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):143, 63

               
               
               Conread position:253-712
               
               
               Cow position:chr24:17369113-17368644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 64

               
               
               Conread position:258-607
               
               
               Cow position:chr24:17405957-17406317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):145, 45

               
               
               Conread position:264-678
               
               
               Cow position:chr24:6339411-6339840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 53

               
               
               Conread position:269-693
               
               
               Cow position:chr24:39501754-39501313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:270-689
               
               
               Cow position:chr24:6068496-6068063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:273-674
               
               
               Cow position:chr24:23805870-23806265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:308-613
               
               
               Cow position:chr24:25439106-25439421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:309-607
               
               
               Cow position:chr24:14250957-14250645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:314-706
               
               
               Cow position:chr24:17545107-17545517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):31, 276

               
               
               Conread position:316-658
               
               
               Cow position:chr24:29181265-29181616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:324-478
               
               
               Cow position:chr24:16325718-16325558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:325-680
               
               
               Cow position:chr24:41231464-41231837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):63, 253

               
               
               Conread position:327-689
               
               
               Cow position:chr24:33008831-33008453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):65, 300

               
               
               Conread position:333-687
               
               
               Cow position:chr24:22794461-22794832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-689
               
               
               Cow position:chr24:15296017-15296390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr24:6238247-6238605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):63, 108

               
               
               Conread position:337-663
               
               
               Cow position:chr24:2712272-2712599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 246

               
               
               Conread position:337-693
               
               
               Cow position:chr24:19198863-19199235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):54, 246

               
               
               Conread position:338-689
               
               
               Cow position:chr24:16056944-16056583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):61, 187

               
               
               Conread position:350-678
               
               
               Cow position:chr24:36478877-36478531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 207

               
               
               Conread position:352-681
               
               
               Cow position:chr24:32363409-32363065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:368-689
               
               
               Cow position:chr24:13374576-13374239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:374-689
               
               
               Cow position:chr24:25263856-25264174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:387-709
               
               
               Cow position:chr24:12164829-12165165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 196

               
               
               Conread position:400-696
               
               
               Cow position:chr24:7597582-7597277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 125

               
               
               Conread position:402-689
               
               
               Cow position:chr24:11208628-11208332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:405-688
               
               
               Cow position:chr24:6052067-6052358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 151

               
               
               Conread position:1-477
               
               
               Cow position:chr25:38398718-38399196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:1-509
               
               
               Cow position:chr25:34344439-34343924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 318

               
               
               Conread position:1-638
               
               
               Cow position:chr25:22150339-22151000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:1-663
               
               
               Cow position:chr25:35562245-35561552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 53

               
               
               Conread position:1-689
               
               
               Cow position:chr25:11664935-11665648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:1-689
               
               
               Cow position:chr25:13959331-13960039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 202

               
               
               Conread position:1-689
               
               
               Cow position:chr25:28862132-28862844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:3-396
               
               
               Cow position:chr25:10135966-10136358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 104

               
               
               Conread position:3-401
               
               
               Cow position:chr25:26355425-26355826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 65

               
               
               Conread position:3-401
               
               
               Cow position:chr25:26930135-26930537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:3-627
               
               
               Cow position:chr25:16923865-16923229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:3-688
               
               
               Cow position:chr25:37647699-37648403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:3-689
               
               
               Cow position:chr25:11042885-11043593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 311

               
               
               Conread position:3-689
               
               
               Cow position:chr25:19338050-19337353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr25:20773067-20772354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr25:32578394-32577690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 319

               
               
               Conread position:3-716
               
               
               Cow position:chr25:34494882-34494151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:7-460
               
               
               Cow position:chr25:21276436-21276906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):31, 246

               
               
               Conread position:7-481
               
               
               Cow position:chr25:26794989-26795431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:320
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):159, 40

               
               
               Conread position:8-477
               
               
               Cow position:chr25:33261732-33262196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:9-686
               
               
               Cow position:chr25:17586748-17586051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 202

               
               
               Conread position:9-689
               
               
               Cow position:chr25:35552961-35553642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 287

               
               
               Conread position:17-402
               
               
               Cow position:chr25:35086015-35085619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:17-422
               
               
               Cow position:chr25:13792934-13792520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:17-616
               
               
               Cow position:chr25:34671115-34670516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:18-391
               
               
               Cow position:chr25:34667452-34667077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:18-678
               
               
               Cow position:chr25:18191109-18190409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 320

               
               
               Conread position:34-364
               
               
               Cow position:chr25:40142247-40141927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 107

               
               
               Conread position:45-494
               
               
               Cow position:chr25:19017078-19016631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:46-689
               
               
               Cow position:chr25:29313992-29313347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:53-678
               
               
               Cow position:chr25:30020605-30020001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:54-490
               
               
               Cow position:chr25:31591473-31591037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:69-689
               
               
               Cow position:chr25:12939874-12939235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 253

               
               
               Conread position:73-613
               
               
               Cow position:chr25:21232126-21232673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:359
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:73-613
               
               
               Cow position:chr25:21241494-21242041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:354
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:75-678
               
               
               Cow position:chr25:33027908-33027298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:82-504
               
               
               Cow position:chr25:9076717-9077140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:94-566
               
               
               Cow position:chr25:27813848-27814341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:106-689
               
               
               Cow position:chr25:27019867-27019265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 216

               
               
               Conread position:120-689
               
               
               Cow position:chr25:24007296-24007880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:123-663
               
               
               Cow position:chr25:29526470-29525913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:142-674
               
               
               Cow position:chr25:17903326-17903854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:142-689
               
               
               Cow position:chr25:18264636-18265169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:366
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:151-627
               
               
               Cow position:chr25:33990826-33990336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:158-449
               
               
               Cow position:chr25:9984669-9984955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):236, 76

               
               
               Conread position:160-689
               
               
               Cow position:chr25:18489481-18490038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:361
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:165-721
               
               
               Cow position:chr25:21542759-21543322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:370
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:166-663
               
               
               Cow position:chr25:20633202-20633715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 151

               
               
               Conread position:170-384
               
               
               Cow position:chr25:18644343-18644139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:187-666
               
               
               Cow position:chr25:1078250-1078718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 16

               
               
               Conread position:193-689
               
               
               Cow position:chr25:30113022-30112544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:198-402
               
               
               Cow position:chr25:10652072-10651870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:198-709
               
               
               Cow position:chr25:26753850-26753324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 106

               
               
               Conread position:206-675
               
               
               Cow position:chr25:22431232-22431712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 43

               
               
               Conread position:214-677
               
               
               Cow position:chr25:14011325-14011805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:329
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):182, 30

               
               
               Conread position:224-632
               
               
               Cow position:chr25:24799030-24799437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 20

               
               
               Conread position:225-696
               
               
               Cow position:chr25:2594272-2594752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:321
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:238-392
               
               
               Cow position:chr25:13965556-13965708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:240-689
               
               
               Cow position:chr25:19410048-19410527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):73, 24

               
               
               Conread position:246-689
               
               
               Cow position:chr25:22197871-22197414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 57

               
               
               Conread position:251-670
               
               
               Cow position:chr25:19327155-19327584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 52

               
               
               Conread position:254-401
               
               
               Cow position:chr25:34615450-34615594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:257-603
               
               
               Cow position:chr25:38803447-38803783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:257-651
               
               
               Cow position:chr25:17451144-17450755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):139, 44

               
               
               Conread position:260-478
               
               
               Cow position:chr25:14773704-14773922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:262-677
               
               
               Cow position:chr25:16871769-16871345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:304-663
               
               
               Cow position:chr25:15004655-15005026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:307-678
               
               
               Cow position:chr25:17657200-17657584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:307-693
               
               
               Cow position:chr25:12865367-12865756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:313-678
               
               
               Cow position:chr25:23740661-23740282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:315-485
               
               
               Cow position:chr25:22519741-22519915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 164

               
               
               Conread position:333-681
               
               
               Cow position:chr25:11152481-11152126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:333-689
               
               
               Cow position:chr25:7223832-7223460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:337-689
               
               
               Cow position:chr25:2223202-2222846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):17, 172

               
               
               Conread position:348-681
               
               
               Cow position:chr25:13942114-13941772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 156

               
               
               Conread position:355-693
               
               
               Cow position:chr25:10634380-10634029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:358-675
               
               
               Cow position:chr25:23462007-23462337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 228

               
               
               Conread position:362-678
               
               
               Cow position:chr25:18286632-18286311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:386-689
               
               
               Cow position:chr25:35571478-35571791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:396-689
               
               
               Cow position:chr25:34257438-34257134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:400-689
               
               
               Cow position:chr25:24670893-24670597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 142

               
               
               Conread position:421-678
               
               
               Cow position:chr25:14619308-14619051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:1-444
               
               
               Cow position:chr26:27139054-27138606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:1-464
               
               
               Cow position:chr26:1884315-1883831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 329

               
               
               Conread position:1-478
               
               
               Cow position:chr26:19012457-19012922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 59

               
               
               Conread position:1-494
               
               
               Cow position:chr26:14176071-14175562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:323
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:1-519
               
               
               Cow position:chr26:10459574-10460122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:1-634
               
               
               Cow position:chr26:25341377-25340746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:1-647
               
               
               Cow position:chr26:12667985-12668640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:1-689
               
               
               Cow position:chr26:30586828-30586117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 242

               
               
               Conread position:2-506
               
               
               Cow position:chr26:8087600-8088106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 43

               
               
               Conread position:3-402
               
               
               Cow position:chr26:4440941-4441346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-402
               
               
               Cow position:chr26:35561725-35562135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 328

               
               
               Conread position:3-477
               
               
               Cow position:chr26:30785294-30785782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-586
               
               
               Cow position:chr26:3028103-3027490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 310

               
               
               Conread position:3-648
               
               
               Cow position:chr26:4122187-4122857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr26:8884372-8885072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr26:9114556-9115267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:3-689
               
               
               Cow position:chr26:13807499-13806799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:3-689
               
               
               Cow position:chr26:35122723-35122014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr26:12586017-12585305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 275

               
               
               Conread position:4-689
               
               
               Cow position:chr26:2349650-2348943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:4-693
               
               
               Cow position:chr26:8872367-8873079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 198

               
               
               Conread position:9-689
               
               
               Cow position:chr26:28707534-28706830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 317

               
               
               Conread position:10-432
               
               
               Cow position:chr26:29089967-29089544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:12-691
               
               
               Cow position:chr26:28646161-28645507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:434
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:17-629
               
               
               Cow position:chr26:18035447-18036074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:18-693
               
               
               Cow position:chr26:34264503-34265197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:24-658
               
               
               Cow position:chr26:3705189-3705841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:26-688
               
               
               Cow position:chr26:1087734-1088411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 300

               
               
               Conread position:34-677
               
               
               Cow position:chr26:7020604-7021273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:415
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:35-680
               
               
               Cow position:chr26:30626044-30625391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:45-405
               
               
               Cow position:chr26:20554655-20554302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:54-689
               
               
               Cow position:chr26:1389564-1390210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr26:14488678-14488027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:59-623
               
               
               Cow position:chr26:2605350-2604778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:62-678
               
               
               Cow position:chr26:34553497-34552889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:65-678
               
               
               Cow position:chr26:15551554-15550929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 66

               
               
               Conread position:68-726
               
               
               Cow position:chr26:14144845-14144205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:418
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:69-386
               
               
               Cow position:chr26:8647678-8647984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:77-641
               
               
               Cow position:chr26:1638437-1637853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 138

               
               
               Conread position:95-689
               
               
               Cow position:chr26:33911419-33910843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:100-396
               
               
               Cow position:chr26:6793028-6793328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 224

               
               
               Conread position:102-680
               
               
               Cow position:chr26:35335584-35334990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:114-389
               
               
               Cow position:chr26:19564815-19564547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:123-678
               
               
               Cow position:chr26:27987947-27987371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 195

               
               
               Conread position:128-693
               
               
               Cow position:chr26:1347327-1346761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:148-477
               
               
               Cow position:chr26:18781867-18781532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:148-627
               
               
               Cow position:chr26:34271743-34272239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:148-693
               
               
               Cow position:chr26:18804691-18804137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:185-659
               
               
               Cow position:chr26:2671064-2670574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 132

               
               
               Conread position:199-688
               
               
               Cow position:chr26:11289881-11290378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:225-623
               
               
               Cow position:chr26:21823881-21823469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:227-456
               
               
               Cow position:chr26:17329259-17329491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 103

               
               
               Conread position:238-602
               
               
               Cow position:chr26:2436437-2436070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):161, 49

               
               
               Conread position:251-689
               
               
               Cow position:chr26:17429699-17429247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:254-689
               
               
               Cow position:chr26:3230248-3230696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:257-689
               
               
               Cow position:chr26:26280632-26281071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:266-681
               
               
               Cow position:chr26:3754833-3755243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:269-455
               
               
               Cow position:chr26:233978-233786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:283-689
               
               
               Cow position:chr26:26285671-26286087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:284-536
               
               
               Cow position:chr26:22619203-22619471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 30

               
               
               Conread position:286-707
               
               
               Cow position:chr26:35149055-35148626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:307-678
               
               
               Cow position:chr26:10699660-10699277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:333-678
               
               
               Cow position:chr26:13183166-13183529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:347-689
               
               
               Cow position:chr26:35191675-35191319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:350-676
               
               
               Cow position:chr26:26312734-26313074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 185

               
               
               Conread position:362-675
               
               
               Cow position:chr26:31793613-31793942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 226

               
               
               Conread position:439-693
               
               
               Cow position:chr26:8428035-8427770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 253

               
               
               Conread position:1-401
               
               
               Cow position:chr27:26552949-26552562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:1-448
               
               
               Cow position:chr27:8200279-8200740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-477
               
               
               Cow position:chr27:22722840-22723316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:1-678
               
               
               Cow position:chr27:4981852-4982546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:1-678
               
               
               Cow position:chr27:15273603-15272894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 327

               
               
               Conread position:1-689
               
               
               Cow position:chr27:3233049-3232351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1-689
               
               
               Cow position:chr27:20809887-20810604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:1-693
               
               
               Cow position:chr27:23318443-23317754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 56

               
               
               Conread position:1-703
               
               
               Cow position:chr27:1905084-1904393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:1-704
               
               
               Cow position:chr27:9990739-9989992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 180

               
               
               Conread position:2-689
               
               
               Cow position:chr27:1535659-1536353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:2-693
               
               
               Cow position:chr27:8960557-8959841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 325

               
               
               Conread position:3-477
               
               
               Cow position:chr27:18696815-18697303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-678
               
               
               Cow position:chr27:17567591-17568275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr27:1520155-1520863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 232

               
               
               Conread position:3-689
               
               
               Cow position:chr27:5984552-5983847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr27:13352771-13353489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr27:16031923-16031214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-714
               
               
               Cow position:chr27:24114627-24115338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:3-723
               
               
               Cow position:chr27:12147169-12146424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:17-477
               
               
               Cow position:chr27:26599416-26599875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 310

               
               
               Conread position:17-681
               
               
               Cow position:chr27:31267723-31268393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:18-488
               
               
               Cow position:chr27:28923493-28923979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 317

               
               
               Conread position:18-640
               
               
               Cow position:chr27:30571310-30571965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 320

               
               
               Conread position:18-687
               
               
               Cow position:chr27:14296715-14297388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:25-689
               
               
               Cow position:chr27:21450938-21451627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 234

               
               
               Conread position:42-678
               
               
               Cow position:chr27:27500762-27501383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:54-678
               
               
               Cow position:chr27:30584627-30583992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:54-693
               
               
               Cow position:chr27:29036840-29036192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:59-592
               
               
               Cow position:chr27:7586727-7587265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:350
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:60-478
               
               
               Cow position:chr27:6017187-6017603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:68-693
               
               
               Cow position:chr27:22260830-22260183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:407
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:78-476
               
               
               Cow position:chr27:28686144-28685739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:90-392
               
               
               Cow position:chr27:20761251-20761552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:91-392
               
               
               Cow position:chr27:2380153-2380456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 229

               
               
               Conread position:95-649
               
               
               Cow position:chr27:29375552-29374997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 93

               
               
               Conread position:99-459
               
               
               Cow position:chr27:2896910-2897276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:100-391
               
               
               Cow position:chr27:1498628-1498913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:118-704
               
               
               Cow position:chr27:15405249-15405839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:119-658
               
               
               Cow position:chr27:30035410-30035974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:124-465
               
               
               Cow position:chr27:11350867-11350520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):41, 200

               
               
               Conread position:124-678
               
               
               Cow position:chr27:25801602-25801031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 198

               
               
               Conread position:135-402
               
               
               Cow position:chr27:26452811-26452547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:135-433
               
               
               Cow position:chr27:22821816-22821521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):261, 59

               
               
               Conread position:135-678
               
               
               Cow position:chr27:15543629-15544189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:147-689
               
               
               Cow position:chr27:10578554-10579130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:166-669
               
               
               Cow position:chr27:865254-865788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 110

               
               
               Conread position:169-429
               
               
               Cow position:chr27:2348492-2348749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:169-650
               
               
               Cow position:chr27:22648257-22647760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 134

               
               
               Conread position:178-477
               
               
               Cow position:chr27:773433-773737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):216, 139

               
               
               Conread position:178-689
               
               
               Cow position:chr27:8426517-8427040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 142

               
               
               Conread position:188-451
               
               
               Cow position:chr27:15874415-15874152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):197, 129

               
               
               Conread position:188-651
               
               
               Cow position:chr27:24064569-24065041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 42

               
               
               Conread position:192-567
               
               
               Cow position:chr27:16582791-16582402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):137, 45

               
               
               Conread position:216-716
               
               
               Cow position:chr27:13919342-13919835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):175, 80

               
               
               Conread position:223-539
               
               
               Cow position:chr27:12172271-12172589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:224-392
               
               
               Cow position:chr27:12176535-12176698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:246-693
               
               
               Cow position:chr27:1082437-1081974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:252-485
               
               
               Cow position:chr27:29006089-29006333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:262-451
               
               
               Cow position:chr27:28894737-28894930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:269-704
               
               
               Cow position:chr27:27044932-27045388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:272-677
               
               
               Cow position:chr27:616018-615608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:272-711
               
               
               Cow position:chr27:25873395-25873838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:304-488
               
               
               Cow position:chr27:12164205-12164017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:307-689
               
               
               Cow position:chr27:3759659-3760051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:319-681
               
               
               Cow position:chr27:17422388-17422761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 143

               
               
               Conread position:321-666
               
               
               Cow position:chr27:25971800-25971441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:333-620
               
               
               Cow position:chr27:29447266-29446960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 247

               
               
               Conread position:368-678
               
               
               Cow position:chr27:31249094-31249416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 162

               
               
               Conread position:375-559
               
               
               Cow position:chr27:21684467-21684275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:382-675
               
               
               Cow position:chr27:31547685-31547366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 201

               
               
               Conread position:386-648
               
               
               Cow position:chr27:7911852-7912124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 186

               
               
               Conread position:386-689
               
               
               Cow position:chr27:27556677-27556989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:427-689
               
               
               Cow position:chr27:13308556-13308827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:437-666
               
               
               Cow position:chr27:1845954-1845715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 135

               
               
               Conread position:1-435
               
               
               Cow position:chr28:8966498-8966064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:1-474
               
               
               Cow position:chr28:13724402-13724877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 227

               
               
               Conread position:1-477
               
               
               Cow position:chr28:15575599-15576069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:1-604
               
               
               Cow position:chr28:25040921-25040309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:410
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:1-663
               
               
               Cow position:chr28:9714072-9713390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:1-672
               
               
               Cow position:chr28:1025811-1025119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 191

               
               
               Conread position:1-675
               
               
               Cow position:chr28:13462482-13463180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:1-678
               
               
               Cow position:chr28:1215312-1214610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr28:5940007-5940706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-678
               
               
               Cow position:chr28:33767542-33768245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:1-681
               
               
               Cow position:chr28:6231162-6230470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:1-681
               
               
               Cow position:chr28:29822706-29823409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 303

               
               
               Conread position:1-689
               
               
               Cow position:chr28:5749185-5748477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 322

               
               
               Conread position:1-689
               
               
               Cow position:chr28:7004526-7005256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 344

               
               
               Conread position:1-689
               
               
               Cow position:chr28:28358259-28357555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:1-689
               
               
               Cow position:chr28:29037126-29036423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 316

               
               
               Conread position:1-689
               
               
               Cow position:chr28:30097396-30098107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr28:33254841-33255550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 324

               
               
               Conread position:1-689
               
               
               Cow position:chr28:33639088-33639799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr28:5824355-5825083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 323

               
               
               Conread position:1-693
               
               
               Cow position:chr28:8718453-8717719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 217

               
               
               Conread position:1-704
               
               
               Cow position:chr28:21629200-21629929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 339

               
               
               Conread position:2-666
               
               
               Cow position:chr28:5568892-5569572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 154

               
               
               Conread position:3-392
               
               
               Cow position:chr28:3461057-3461418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:3-451
               
               
               Cow position:chr28:34083998-34083563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):391, 50

               
               
               Conread position:3-689
               
               
               Cow position:chr28:483187-482479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 232

               
               
               Conread position:3-689
               
               
               Cow position:chr28:1955892-1956598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:3-689
               
               
               Cow position:chr28:2644239-2644944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 237

               
               
               Conread position:3-689
               
               
               Cow position:chr28:6477741-6478448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:3-689
               
               
               Cow position:chr28:6536274-6535569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 321

               
               
               Conread position:3-689
               
               
               Cow position:chr28:7335513-7336212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr28:15918000-15917296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:3-689
               
               
               Cow position:chr28:28470543-28471254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 141

               
               
               Conread position:3-693
               
               
               Cow position:chr28:6777484-6776769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr28:24621324-24620629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 326

               
               
               Conread position:3-693
               
               
               Cow position:chr28:24885381-24886094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr28:28928353-28929067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 312

               
               
               Conread position:3-693
               
               
               Cow position:chr28:34582444-34583158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-696
               
               
               Cow position:chr28:10302362-10303074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:4-689
               
               
               Cow position:chr28:15604137-15604846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:5-665
               
               
               Cow position:chr28:28441280-28441941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:8-699
               
               
               Cow position:chr28:12700193-12700883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:9-693
               
               
               Cow position:chr28:12217761-12217055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:11-689
               
               
               Cow position:chr28:3004979-3004290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:17-715
               
               
               Cow position:chr28:3308374-3309055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:444
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:18-568
               
               
               Cow position:chr28:25562960-25563521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:18-689
               
               
               Cow position:chr28:22230793-22230103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:18-692
               
               
               Cow position:chr28:25595445-25596134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:25-681
               
               
               Cow position:chr28:29436230-29435578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:28-707
               
               
               Cow position:chr28:25026424-25027125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 179

               
               
               Conread position:31-689
               
               
               Cow position:chr28:443960-444637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:35-692
               
               
               Cow position:chr28:26924079-26923398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 311

               
               
               Conread position:42-675
               
               
               Cow position:chr28:9443693-9443049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:429
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:42-693
               
               
               Cow position:chr28:7829073-7829740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 127

               
               
               Conread position:54-675
               
               
               Cow position:chr28:15352540-15351905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:55-689
               
               
               Cow position:chr28:32786847-32786198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 267

               
               
               Conread position:58-630
               
               
               Cow position:chr28:4044813-4045392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:59-477
               
               
               Cow position:chr28:22040828-22040400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 263

               
               
               Conread position:59-653
               
               
               Cow position:chr28:34606153-34606785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:59-693
               
               
               Cow position:chr28:24734125-24734772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:60-446
               
               
               Cow position:chr28:17746156-17745767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:60-690
               
               
               Cow position:chr28:17249981-17249355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:69-478
               
               
               Cow position:chr28:10643891-10643481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 117

               
               
               Conread position:69-494
               
               
               Cow position:chr28:5771824-5772256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:69-694
               
               
               Cow position:chr28:32731395-32730781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:415
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:71-689
               
               
               Cow position:chr28:16180968-16181597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:73-689
               
               
               Cow position:chr28:25827504-25826889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:74-678
               
               
               Cow position:chr28:14505416-14506036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:78-690
               
               
               Cow position:chr28:24498647-24499278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:80-690
               
               
               Cow position:chr28:6474642-6474022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:94-698
               
               
               Cow position:chr28:4958887-4958266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:103-704
               
               
               Cow position:chr28:6812681-6812075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 28

               
               
               Conread position:106-689
               
               
               Cow position:chr28:5636678-5637279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 216

               
               
               Conread position:117-402
               
               
               Cow position:chr28:5767542-5767825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:119-401
               
               
               Cow position:chr28:11502583-11502305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:120-690
               
               
               Cow position:chr28:6472792-6472209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:128-599
               
               
               Cow position:chr28:8787750-8788224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:331
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 51

               
               
               Conread position:128-705
               
               
               Cow position:chr28:32198085-32198660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 143

               
               
               Conread position:135-675
               
               
               Cow position:chr28:12154503-12155058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:144-725
               
               
               Cow position:chr28:14447297-14447871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:382
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:145-689
               
               
               Cow position:chr28:22553213-22553753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:149-689
               
               
               Cow position:chr28:7907870-7907316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 155

               
               
               Conread position:166-689
               
               
               Cow position:chr28:21895987-21896511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 151

               
               
               Conread position:172-628
               
               
               Cow position:chr28:7215215-7214750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:179-607
               
               
               Cow position:chr28:5337154-5336709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 124

               
               
               Conread position:179-700
               
               
               Cow position:chr28:7654913-7654379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 153

               
               
               Conread position:188-678
               
               
               Cow position:chr28:15003979-15004485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 112

               
               
               Conread position:198-689
               
               
               Cow position:chr28:20967945-20967440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 119

               
               
               Conread position:208-693
               
               
               Cow position:chr28:12176640-12177130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:322
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):182, 107

               
               
               Conread position:216-696
               
               
               Cow position:chr28:13880265-13880755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 88

               
               
               Conread position:216-706
               
               
               Cow position:chr28:12649972-12650478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 101

               
               
               Conread position:219-688
               
               
               Cow position:chr28:14665892-14666374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:223-670
               
               
               Cow position:chr28:34678446-34677984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:226-678
               
               
               Cow position:chr28:3744729-3745183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:298
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):158, 35

               
               
               Conread position:231-678
               
               
               Cow position:chr28:10325828-10326276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 69

               
               
               Conread position:239-689
               
               
               Cow position:chr28:4929685-4929221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 64

               
               
               Conread position:254-464
               
               
               Cow position:chr28:34879629-34879848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 192

               
               
               Conread position:264-664
               
               
               Cow position:chr28:25761687-25762090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:269-674
               
               
               Cow position:chr28:30966009-30966421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):120, 48

               
               
               Conread position:276-634
               
               
               Cow position:chr28:23394218-23393847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:287-725
               
               
               Cow position:chr28:16041840-16041385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:291-711
               
               
               Cow position:chr28:12952026-12952450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:316-731
               
               
               Cow position:chr28:22234651-22234201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 274

               
               
               Conread position:317-663
               
               
               Cow position:chr28:22153191-22153544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:317-689
               
               
               Cow position:chr28:28935122-28934734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:327-696
               
               
               Cow position:chr28:20630226-20629853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:333-681
               
               
               Cow position:chr28:27030455-27030104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 215

               
               
               Conread position:333-689
               
               
               Cow position:chr28:7443613-7443240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr28:25849417-25849795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):71, 200

               
               
               Conread position:338-715
               
               
               Cow position:chr28:6842659-6842269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:340-548
               
               
               Cow position:chr28:22498172-22498395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:340-579
               
               
               Cow position:chr28:26795264-26795520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:342-623
               
               
               Cow position:chr28:22133401-22133693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 164

               
               
               Conread position:347-689
               
               
               Cow position:chr28:3626885-3627242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):47, 240

               
               
               Conread position:350-678
               
               
               Cow position:chr28:2663084-2662740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:350-689
               
               
               Cow position:chr28:28184258-28184620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:355-689
               
               
               Cow position:chr28:23619846-23620192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 231

               
               
               Conread position:358-606
               
               
               Cow position:chr28:13373916-13373656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 224

               
               
               Conread position:360-689
               
               
               Cow position:chr28:24670677-24671022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 229

               
               
               Conread position:369-689
               
               
               Cow position:chr28:5311866-5312203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):25, 164

               
               
               Conread position:386-689
               
               
               Cow position:chr28:15054075-15054385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:421-722
               
               
               Cow position:chr28:8965931-8965618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 161

               
               
               Conread position:427-689
               
               
               Cow position:chr28:7059188-7059459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:429-707
               
               
               Cow position:chr28:14229993-14229716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:1-477
               
               
               Cow position:chr29:13850390-13849905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-477
               
               
               Cow position:chr29:43255917-43255430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-493
               
               
               Cow position:chr29:17976996-17977487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:1-568
               
               
               Cow position:chr29:19656393-19656982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:1-657
               
               
               Cow position:chr29:14209059-14208391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:1-678
               
               
               Cow position:chr29:17407628-17408323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 212

               
               
               Conread position:1-685
               
               
               Cow position:chr29:23055811-23055146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:1-689
               
               
               Cow position:chr29:2464381-2463672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1-689
               
               
               Cow position:chr29:2692939-2693640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr29:5239882-5240594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:1-689
               
               
               Cow position:chr29:6263511-6262809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 201

               
               
               Conread position:1-689
               
               
               Cow position:chr29:16346695-16347401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr29:25930027-25929307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:1-689
               
               
               Cow position:chr29:45461722-45462433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr29:408769-408059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:1-699
               
               
               Cow position:chr29:32288873-32289602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:1-704
               
               
               Cow position:chr29:8624703-8623980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:1-709
               
               
               Cow position:chr29:6933981-6934710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:1-764
               
               
               Cow position:chr29:43518695-43517930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 291

               
               
               Conread position:2-388
               
               
               Cow position:chr29:37043110-37042724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:2-395
               
               
               Cow position:chr29:11226744-11226362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:2-689
               
               
               Cow position:chr29:45207002-45207710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 324

               
               
               Conread position:3-475
               
               
               Cow position:chr29:13899157-13899644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr29:666916-666428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr29:39424647-39424159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:3-501
               
               
               Cow position:chr29:15624207-15623695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 214

               
               
               Conread position:3-627
               
               
               Cow position:chr29:15995886-15995242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 168

               
               
               Conread position:3-659
               
               
               Cow position:chr29:35299411-35300091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-664
               
               
               Cow position:chr29:27260630-27259935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 312

               
               
               Conread position:3-672
               
               
               Cow position:chr29:10845447-10846141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 219

               
               
               Conread position:3-689
               
               
               Cow position:chr29:7846886-7847592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr29:16036922-16036217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr29:19525798-19525090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr29:21226472-21227176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr29:31095096-31094386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 324

               
               
               Conread position:3-689
               
               
               Cow position:chr29:31764535-31765240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 180

               
               
               Conread position:3-689
               
               
               Cow position:chr29:32557254-32556544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 324

               
               
               Conread position:3-689
               
               
               Cow position:chr29:42256483-42255778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 50

               
               
               Conread position:3-693
               
               
               Cow position:chr29:608137-607433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 57

               
               
               Conread position:3-693
               
               
               Cow position:chr29:1477943-1478656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr29:15967062-15966349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr29:21430362-21429655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-707
               
               
               Cow position:chr29:29702882-29702180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 275

               
               
               Conread position:3-709
               
               
               Cow position:chr29:19890068-19890792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 128

               
               
               Conread position:4-689
               
               
               Cow position:chr29:32514819-32515528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:9-606
               
               
               Cow position:chr29:7331919-7331314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:9-666
               
               
               Cow position:chr29:10249179-10248505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:11-457
               
               
               Cow position:chr29:20465792-20466260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 304

               
               
               Conread position:17-675
               
               
               Cow position:chr29:34538734-34538061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:17-678
               
               
               Cow position:chr29:22950367-22949707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:17-689
               
               
               Cow position:chr29:13584723-13585415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 307

               
               
               Conread position:17-736
               
               
               Cow position:chr29:18523919-18523168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:18-607
               
               
               Cow position:chr29:107564-108156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:19-721
               
               
               Cow position:chr29:2887135-2886448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 150

               
               
               Conread position:25-619
               
               
               Cow position:chr29:7655865-7655282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:25-676
               
               
               Cow position:chr29:25458102-25457442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:427
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:45-485
               
               
               Cow position:chr29:44471222-44471653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:47-707
               
               
               Cow position:chr29:19618233-19617570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 236

               
               
               Conread position:48-605
               
               
               Cow position:chr29:5960389-5960951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 84

               
               
               Conread position:62-689
               
               
               Cow position:chr29:22284619-22285253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 5

               
               
               Conread position:65-678
               
               
               Cow position:chr29:10238079-10237476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:400
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:68-663
               
               
               Cow position:chr29:21267216-21267804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:68-672
               
               
               Cow position:chr29:7749106-7748510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:80-607
               
               
               Cow position:chr29:3563839-3564358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:85-396
               
               
               Cow position:chr29:43239577-43239281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:88-663
               
               
               Cow position:chr29:579306-578733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 228

               
               
               Conread position:90-694
               
               
               Cow position:chr29:44599952-44599363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 10

               
               
               Conread position:91-477
               
               
               Cow position:chr29:41184426-41184037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:91-678
               
               
               Cow position:chr29:9080209-9079606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 227

               
               
               Conread position:97-477
               
               
               Cow position:chr29:5426838-5426447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 225

               
               
               Conread position:97-681
               
               
               Cow position:chr29:43553178-43552589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:100-715
               
               
               Cow position:chr29:9963048-9963676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:103-689
               
               
               Cow position:chr29:18412600-18413176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:119-689
               
               
               Cow position:chr29:28697764-28697179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 200

               
               
               Conread position:123-470
               
               
               Cow position:chr29:11474817-11475169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:124-689
               
               
               Cow position:chr29:31183996-31184576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:124-706
               
               
               Cow position:chr29:40619229-40618631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:128-693
               
               
               Cow position:chr29:34738065-34737487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:135-434
               
               
               Cow position:chr29:9681591-9681292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:138-673
               
               
               Cow position:chr29:19515710-19515158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 166

               
               
               Conread position:142-450
               
               
               Cow position:chr29:40317519-40317208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:144-605
               
               
               Cow position:chr29:28710831-28710361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:151-457
               
               
               Cow position:chr29:23169223-23169531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:166-689
               
               
               Cow position:chr29:35956641-35956102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 151

               
               
               Conread position:176-678
               
               
               Cow position:chr29:7723350-7723864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:345
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):103, 142

               
               
               Conread position:178-693
               
               
               Cow position:chr29:22745576-22746105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 48

               
               
               Conread position:209-478
               
               
               Cow position:chr29:45810273-45810542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):185, 52

               
               
               Conread position:212-706
               
               
               Cow position:chr29:42806700-42807208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 105

               
               
               Conread position:213-689
               
               
               Cow position:chr29:32291310-32291794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 90

               
               
               Conread position:224-392
               
               
               Cow position:chr29:36595237-36595077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:224-689
               
               
               Cow position:chr29:10820993-10820515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:225-693
               
               
               Cow position:chr29:18398994-18399474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:228-679
               
               
               Cow position:chr29:26697693-26697224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):117, 89

               
               
               Conread position:234-678
               
               
               Cow position:chr29:34121750-34121311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 27

               
               
               Conread position:234-695
               
               
               Cow position:chr29:37307996-37307544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 38

               
               
               Conread position:240-689
               
               
               Cow position:chr29:16064448-16064910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 77

               
               
               Conread position:246-712
               
               
               Cow position:chr29:1577227-1576750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):143, 57

               
               
               Conread position:251-602
               
               
               Cow position:chr29:32352366-32352733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:253-551
               
               
               Cow position:chr29:34807290-34807605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):134, 64

               
               
               Conread position:256-693
               
               
               Cow position:chr29:34524569-34524117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 61

               
               
               Conread position:268-689
               
               
               Cow position:chr29:2483673-2484108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:269-693
               
               
               Cow position:chr29:39371159-39371592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 44

               
               
               Conread position:280-677
               
               
               Cow position:chr29:17649566-17649945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:282-585
               
               
               Cow position:chr29:32805354-32805674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:283-689
               
               
               Cow position:chr29:21473929-21474349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:295-621
               
               
               Cow position:chr29:43626851-43626508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 306

               
               
               Conread position:307-492
               
               
               Cow position:chr29:38618719-38618526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:307-693
               
               
               Cow position:chr29:35264720-35265122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:317-689
               
               
               Cow position:chr29:32807193-32807568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:318-690
               
               
               Cow position:chr29:13647072-13646700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:323-485
               
               
               Cow position:chr29:40462779-40462947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):67, 139

               
               
               Conread position:333-666
               
               
               Cow position:chr29:44683194-44683544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:333-689
               
               
               Cow position:chr29:4163516-4163888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):65, 199

               
               
               Conread position:337-558
               
               
               Cow position:chr29:19566029-19565805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):55, 157

               
               
               Conread position:340-689
               
               
               Cow position:chr29:15699146-15699512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 193

               
               
               Conread position:346-678
               
               
               Cow position:chr29:3585369-3585021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):52, 226

               
               
               Conread position:382-678
               
               
               Cow position:chr29:30433311-30433001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 180

               
               
               Conread position:382-689
               
               
               Cow position:chr29:4083619-4083306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:406-696
               
               
               Cow position:chr29:20972635-20972334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):66, 172

               
               
               Conread position:421-678
               
               
               Cow position:chr29:35260824-35261081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:1-376
               
               
               Cow position:chr3:64813044-64812679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:1-464
               
               
               Cow position:chr3:63689841-63689367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 216

               
               
               Conread position:1-477
               
               
               Cow position:chr3:34028521-34028044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 208

               
               
               Conread position:1-559
               
               
               Cow position:chr3:59863962-59864541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:1-579
               
               
               Cow position:chr3:64427835-64427254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:1-582
               
               
               Cow position:chr3:1504513-1505094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:1-587
               
               
               Cow position:chr3:67532563-67533150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:377
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):124, 52

               
               
               Conread position:1-614
               
               
               Cow position:chr3:79592543-79593185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 313

               
               
               Conread position:1-625
               
               
               Cow position:chr3:65920252-65920862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:1-671
               
               
               Cow position:chr3:29581068-29581756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 195

               
               
               Conread position:1-675
               
               
               Cow position:chr3:77581022-77581700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 204

               
               
               Conread position:1-678
               
               
               Cow position:chr3:16884884-16884198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 169

               
               
               Conread position:1-678
               
               
               Cow position:chr3:35618990-35619662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 321

               
               
               Conread position:1-678
               
               
               Cow position:chr3:39556177-39555482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:1-678
               
               
               Cow position:chr3:52689185-52689861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:1-678
               
               
               Cow position:chr3:66651909-66651233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:1-678
               
               
               Cow position:chr3:69422047-69421364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 39

               
               
               Conread position:1-681
               
               
               Cow position:chr3:31320745-31321441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 125

               
               
               Conread position:1-681
               
               
               Cow position:chr3:78025029-78024328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 327

               
               
               Conread position:1-681
               
               
               Cow position:chr3:82931041-82931731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:1-687
               
               
               Cow position:chr3:45976905-45977614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:1-687
               
               
               Cow position:chr3:72389362-72390068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 341

               
               
               Conread position:1-688
               
               
               Cow position:chr3:15656873-15656197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 146

               
               
               Conread position:1-689
               
               
               Cow position:chr3:10243058-10243773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 331

               
               
               Conread position:1-689
               
               
               Cow position:chr3:21179839-21179145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:1-689
               
               
               Cow position:chr3:22085007-22084315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 269

               
               
               Conread position:1-689
               
               
               Cow position:chr3:40825801-40826512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 324

               
               
               Conread position:1-689
               
               
               Cow position:chr3:53048376-53047679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 162

               
               
               Conread position:1-689
               
               
               Cow position:chr3:72632472-72633187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:1-689
               
               
               Cow position:chr3:75039442-75038728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 328

               
               
               Conread position:1-693
               
               
               Cow position:chr3:30320667-30321376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:1-693
               
               
               Cow position:chr3:56337548-56336840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 211

               
               
               Conread position:1-693
               
               
               Cow position:chr3:57482320-57481618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 180

               
               
               Conread position:1-704
               
               
               Cow position:chr3:19946646-19947350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:2-478
               
               
               Cow position:chr3:8453153-8452676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:3-390
               
               
               Cow position:chr3:54655176-54655579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:3-477
               
               
               Cow position:chr3:50203952-50204439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 321

               
               
               Conread position:3-567
               
               
               Cow position:chr3:34458461-34457871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-650
               
               
               Cow position:chr3:12664342-12665010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-669
               
               
               Cow position:chr3:22725363-22724674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:3-677
               
               
               Cow position:chr3:25470449-25471101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:448
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:3-678
               
               
               Cow position:chr3:19798747-19798047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-678
               
               
               Cow position:chr3:32620636-32619937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-688
               
               
               Cow position:chr3:47079204-47078500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr3:6713413-6714121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 307

               
               
               Conread position:3-689
               
               
               Cow position:chr3:13724310-13723598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 163

               
               
               Conread position:3-689
               
               
               Cow position:chr3:19882881-19883584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 289

               
               
               Conread position:3-689
               
               
               Cow position:chr3:19941321-19942006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:3-689
               
               
               Cow position:chr3:20380309-20379603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:3-689
               
               
               Cow position:chr3:24264606-24265312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 278

               
               
               Conread position:3-689
               
               
               Cow position:chr3:30616531-30615823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 308

               
               
               Conread position:3-689
               
               
               Cow position:chr3:37971457-37972148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:3-689
               
               
               Cow position:chr3:40337734-40337032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr3:46858879-46858170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 307

               
               
               Conread position:3-689
               
               
               Cow position:chr3:49611803-49611094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr3:49998543-49999250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr3:66969474-66968765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:3-689
               
               
               Cow position:chr3:68697562-68696851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr3:68718301-68717596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr3:68871344-68870636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:3-689
               
               
               Cow position:chr3:68890166-68889458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr3:74059882-74060583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-689
               
               
               Cow position:chr3:83766658-83767367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-693
               
               
               Cow position:chr3:15415875-15416585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr3:16225289-16225996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 320

               
               
               Conread position:3-693
               
               
               Cow position:chr3:18861848-18862559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 235

               
               
               Conread position:3-693
               
               
               Cow position:chr3:35611559-35612273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-696
               
               
               Cow position:chr3:49563415-49564137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-709
               
               
               Cow position:chr3:29129500-29130233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:4-633
               
               
               Cow position:chr3:41082577-41083223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 57

               
               
               Conread position:4-728
               
               
               Cow position:chr3:11510431-11509699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:5-392
               
               
               Cow position:chr3:24456788-24456438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:7-623
               
               
               Cow position:chr3:43345829-43345199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:7-689
               
               
               Cow position:chr3:66888783-66888082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 315

               
               
               Conread position:8-659
               
               
               Cow position:chr3:63000948-63000272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:8-689
               
               
               Cow position:chr3:7246689-7245990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:9-642
               
               
               Cow position:chr3:34014753-34015412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:9-689
               
               
               Cow position:chr3:64653078-64653782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:10-478
               
               
               Cow position:chr3:8242028-8242504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:10-689
               
               
               Cow position:chr3:57978111-57977433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:12-396
               
               
               Cow position:chr3:38529347-38528962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:265
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:12-678
               
               
               Cow position:chr3:29324572-29325247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:13-396
               
               
               Cow position:chr3:40209060-40208682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:13-689
               
               
               Cow position:chr3:22338324-22339022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:16-452
               
               
               Cow position:chr3:19719115-19718674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:17-392
               
               
               Cow position:chr3:77062553-77062160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):32, 175

               
               
               Conread position:17-410
               
               
               Cow position:chr3:27211555-27211929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):379, 10

               
               
               Conread position:17-460
               
               
               Cow position:chr3:63145779-63145338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:17-478
               
               
               Cow position:chr3:58855677-58856114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:17-692
               
               
               Cow position:chr3:57741945-57742629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 296

               
               
               Conread position:17-697
               
               
               Cow position:chr3:66044497-66043802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:18-401
               
               
               Cow position:chr3:40005469-40005084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 205

               
               
               Conread position:18-675
               
               
               Cow position:chr3:58128496-58129151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:438
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):24, 156

               
               
               Conread position:18-681
               
               
               Cow position:chr3:18760000-18759314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 313

               
               
               Conread position:18-693
               
               
               Cow position:chr3:56296805-56297503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:18-693
               
               
               Cow position:chr3:74850712-74850028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:18-699
               
               
               Cow position:chr3:49335630-49336319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:19-478
               
               
               Cow position:chr3:13477738-13478228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:329
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):108, 196

               
               
               Conread position:19-678
               
               
               Cow position:chr3:21004237-21004917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:20-477
               
               
               Cow position:chr3:49453423-49453890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 256

               
               
               Conread position:22-725
               
               
               Cow position:chr3:13466914-13466211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:25-620
               
               
               Cow position:chr3:40742294-40741684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:406
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:25-681
               
               
               Cow position:chr3:33692595-33691942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 233

               
               
               Conread position:25-693
               
               
               Cow position:chr3:36171495-36170819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:26-689
               
               
               Cow position:chr3:3653853-3653173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 175

               
               
               Conread position:38-490
               
               
               Cow position:chr3:66576770-66576314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 149

               
               
               Conread position:45-478
               
               
               Cow position:chr3:50050220-50050662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 160

               
               
               Conread position:45-666
               
               
               Cow position:chr3:19767887-19768511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:47-635
               
               
               Cow position:chr3:82808490-82809080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:378
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:48-686
               
               
               Cow position:chr3:32413236-32412578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 275

               
               
               Conread position:49-689
               
               
               Cow position:chr3:47696261-47696913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:53-434
               
               
               Cow position:chr3:33459719-33460107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):78, 163

               
               
               Conread position:54-634
               
               
               Cow position:chr3:3790099-3790669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:54-678
               
               
               Cow position:chr3:61555227-61554575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 273

               
               
               Conread position:54-689
               
               
               Cow position:chr3:56485799-56485146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:54-718
               
               
               Cow position:chr3:83947232-83947903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:59-707
               
               
               Cow position:chr3:9404757-9404098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:61-677
               
               
               Cow position:chr3:67780950-67781566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:411
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:63-614
               
               
               Cow position:chr3:78906042-78905477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 180

               
               
               Conread position:67-693
               
               
               Cow position:chr3:39233083-39233706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 55

               
               
               Conread position:67-702
               
               
               Cow position:chr3:31770613-31771257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:68-478
               
               
               Cow position:chr3:75165589-75165191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:68-494
               
               
               Cow position:chr3:38002591-38003019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 61

               
               
               Conread position:72-674
               
               
               Cow position:chr3:40297495-40296884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:72-689
               
               
               Cow position:chr3:13276798-13276168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:73-614
               
               
               Cow position:chr3:37242292-37242825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:359
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:83-693
               
               
               Cow position:chr3:16294413-16293790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:86-679
               
               
               Cow position:chr3:63239522-63238924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 237

               
               
               Conread position:92-540
               
               
               Cow position:chr3:51339603-51339146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:95-402
               
               
               Cow position:chr3:64735995-64735692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:95-635
               
               
               Cow position:chr3:69434519-69433958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 217

               
               
               Conread position:96-444
               
               
               Cow position:chr3:36238064-36237704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:96-693
               
               
               Cow position:chr3:42994374-42993758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:98-693
               
               
               Cow position:chr3:29643872-29644483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:410
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:98-706
               
               
               Cow position:chr3:49464044-49463424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:100-452
               
               
               Cow position:chr3:3938345-3938711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 226

               
               
               Conread position:100-477
               
               
               Cow position:chr3:7326948-7327329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:103-627
               
               
               Cow position:chr3:27527855-27527325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:338
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:103-689
               
               
               Cow position:chr3:43526223-43525625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:105-477
               
               
               Cow position:chr3:6441166-6441556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 225

               
               
               Conread position:110-396
               
               
               Cow position:chr3:15053045-15052761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:114-678
               
               
               Cow position:chr3:45692490-45691933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:119-689
               
               
               Cow position:chr3:76001424-76000847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:120-678
               
               
               Cow position:chr3:67546057-67545495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:120-689
               
               
               Cow position:chr3:42748193-42747608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:120-689
               
               
               Cow position:chr3:65177540-65178123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:121-678
               
               
               Cow position:chr3:56645800-56645226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 195

               
               
               Conread position:121-689
               
               
               Cow position:chr3:53880736-53880153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 197

               
               
               Conread position:124-675
               
               
               Cow position:chr3:46505302-46505870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:125-570
               
               
               Cow position:chr3:11395639-11395185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:129-434
               
               
               Cow position:chr3:43044190-43044511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:130-451
               
               
               Cow position:chr3:38769343-38769659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:139-689
               
               
               Cow position:chr3:1482583-1483143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 176

               
               
               Conread position:139-689
               
               
               Cow position:chr3:38251414-38251958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:385
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:140-707
               
               
               Cow position:chr3:11182397-11181814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:146-689
               
               
               Cow position:chr3:6864223-6864774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 172

               
               
               Conread position:148-693
               
               
               Cow position:chr3:1033420-1033981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:149-688
               
               
               Cow position:chr3:54813926-54814455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:150-678
               
               
               Cow position:chr3:79315831-79316356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 7

               
               
               Conread position:151-663
               
               
               Cow position:chr3:32837907-32838448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:154-477
               
               
               Cow position:chr3:590741-591067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:166-477
               
               
               Cow position:chr3:4162386-4162059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):138, 268

               
               
               Conread position:166-478
               
               
               Cow position:chr3:33470315-33470007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):223, 26

               
               
               Conread position:166-592
               
               
               Cow position:chr3:20889065-20888635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):160, 19

               
               
               Conread position:166-678
               
               
               Cow position:chr3:40285739-40285211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 151

               
               
               Conread position:178-689
               
               
               Cow position:chr3:40048478-40049003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 139

               
               
               Conread position:178-716
               
               
               Cow position:chr3:32220330-32220861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 107

               
               
               Conread position:182-622
               
               
               Cow position:chr3:34347487-34347031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 135

               
               
               Conread position:183-678
               
               
               Cow position:chr3:57554363-57554879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 151

               
               
               Conread position:184-663
               
               
               Cow position:chr3:50460944-50461420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):210, 129

               
               
               Conread position:186-477
               
               
               Cow position:chr3:2868163-2867867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):208, 131

               
               
               Conread position:192-477
               
               
               Cow position:chr3:36120487-36120777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):195, 125

               
               
               Conread position:209-634
               
               
               Cow position:chr3:70903794-70903365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):182, 104

               
               
               Conread position:209-677
               
               
               Cow position:chr3:73637901-73638383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:212-689
               
               
               Cow position:chr3:31396020-31396487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:216-477
               
               
               Cow position:chr3:14467249-14466986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:216-677
               
               
               Cow position:chr3:27222682-27223150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 14

               
               
               Conread position:219-706
               
               
               Cow position:chr3:33326012-33326517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:237-623
               
               
               Cow position:chr3:70097295-70096901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:238-432
               
               
               Cow position:chr3:32357460-32357269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:238-570
               
               
               Cow position:chr3:62786391-62786062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):160, 75

               
               
               Conread position:240-689
               
               
               Cow position:chr3:37280046-37280509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 63

               
               
               Conread position:249-678
               
               
               Cow position:chr3:48034595-48034169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 64

               
               
               Conread position:251-678
               
               
               Cow position:chr3:56100941-56101369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 22

               
               
               Conread position:251-723
               
               
               Cow position:chr3:27091511-27091031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 149

               
               
               Conread position:252-395
               
               
               Cow position:chr3:13503312-13503174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:252-657
               
               
               Cow position:chr3:10370664-10371078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:255-457
               
               
               Cow position:chr3:80939947-80939750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):141, 45

               
               
               Conread position:257-696
               
               
               Cow position:chr3:27866327-27866777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 60

               
               
               Conread position:269-648
               
               
               Cow position:chr3:53518516-53518912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:283-689
               
               
               Cow position:chr3:2866961-2866541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:283-693
               
               
               Cow position:chr3:49605745-49605323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:287-678
               
               
               Cow position:chr3:41314776-41315180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:292-693
               
               
               Cow position:chr3:61628269-61628696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:300-659
               
               
               Cow position:chr3:14881810-14881439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:307-678
               
               
               Cow position:chr3:38095616-38096004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:307-712
               
               
               Cow position:chr3:45567928-45568350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:316-644
               
               
               Cow position:chr3:69442826-69442495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:316-678
               
               
               Cow position:chr3:54568755-54569133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:317-534
               
               
               Cow position:chr3:65206036-65205804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 43

               
               
               Conread position:317-716
               
               
               Cow position:chr3:61173224-61173632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:323-707
               
               
               Cow position:chr3:55108853-55108452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:324-470
               
               
               Cow position:chr3:24326525-24326678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:324-615
               
               
               Cow position:chr3:73517646-73517951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:325-716
               
               
               Cow position:chr3:8098089-8098487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:333-689
               
               
               Cow position:chr3:32490972-32490599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr3:74141167-74140790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 244

               
               
               Conread position:334-689
               
               
               Cow position:chr3:58026255-58025897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:335-723
               
               
               Cow position:chr3:24904445-24904833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:336-681
               
               
               Cow position:chr3:49296491-49296857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 273

               
               
               Conread position:337-678
               
               
               Cow position:chr3:35880652-35881006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:337-706
               
               
               Cow position:chr3:77084816-77084425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 245

               
               
               Conread position:338-696
               
               
               Cow position:chr3:31934587-31934217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:347-681
               
               
               Cow position:chr3:3837830-3837485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 233

               
               
               Conread position:347-689
               
               
               Cow position:chr3:46224653-46225008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 214

               
               
               Conread position:347-693
               
               
               Cow position:chr3:1740117-1739754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:347-726
               
               
               Cow position:chr3:30441568-30441180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 230

               
               
               Conread position:356-689
               
               
               Cow position:chr3:2366126-2365783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 226

               
               
               Conread position:361-715
               
               
               Cow position:chr3:60178322-60177955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:362-689
               
               
               Cow position:chr3:5951846-5951502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):32, 227

               
               
               Conread position:362-689
               
               
               Cow position:chr3:77273022-77272682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:367-707
               
               
               Cow position:chr3:48096305-48095950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 216

               
               
               Conread position:368-626
               
               
               Cow position:chr3:23941659-23941385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:368-689
               
               
               Cow position:chr3:37893609-37893945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:368-689
               
               
               Cow position:chr3:68510560-68510222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):26, 197

               
               
               Conread position:371-663
               
               
               Cow position:chr3:42977805-42977494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):23, 218

               
               
               Conread position:375-689
               
               
               Cow position:chr3:5474324-5474653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):21, 212

               
               
               Conread position:386-689
               
               
               Cow position:chr3:19880851-19881163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):24, 139

               
               
               Conread position:395-689
               
               
               Cow position:chr3:3552133-3552436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:396-693
               
               
               Cow position:chr3:2834729-2834420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 202

               
               
               Conread position:409-678
               
               
               Cow position:chr3:14679912-14680192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:409-689
               
               
               Cow position:chr3:35342475-35342764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:412-669
               
               
               Cow position:chr3:50941401-50941669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 169

               
               
               Conread position:412-678
               
               
               Cow position:chr3:20603024-20602752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:423-669
               
               
               Cow position:chr3:24530540-24530797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 150

               
               
               Conread position:427-689
               
               
               Cow position:chr3:43084085-43084356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:427-693
               
               
               Cow position:chr3:2572370-2572646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:427-693
               
               
               Cow position:chr3:6528835-6529111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:427-699
               
               
               Cow position:chr3:12798208-12797926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:465-690
               
               
               Cow position:chr3:34027986-34027760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:1-451
               
               
               Cow position:chr4:10542230-10541773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:1-461
               
               
               Cow position:chr4:46016376-46015922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 205

               
               
               Conread position:1-596
               
               
               Cow position:chr4:5487177-5486561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 135

               
               
               Conread position:1-606
               
               
               Cow position:chr4:11391278-11390653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 307

               
               
               Conread position:1-620
               
               
               Cow position:chr4:50871357-50870723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:410
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:1-675
               
               
               Cow position:chr4:5048311-5047625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:1-675
               
               
               Cow position:chr4:17834646-17833933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 308

               
               
               Conread position:1-678
               
               
               Cow position:chr4:43317439-43316739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 173

               
               
               Conread position:1-681
               
               
               Cow position:chr4:43899922-43899217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:1-689
               
               
               Cow position:chr4:4378602-4379303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 173

               
               
               Conread position:1-689
               
               
               Cow position:chr4:6488159-6487448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:1-689
               
               
               Cow position:chr4:28834775-28835481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:1-689
               
               
               Cow position:chr4:33495769-33496481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr4:34176774-34176065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:1-689
               
               
               Cow position:chr4:44594156-44593473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 183

               
               
               Conread position:1-689
               
               
               Cow position:chr4:46712387-46711687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 324

               
               
               Conread position:1-689
               
               
               Cow position:chr4:47751555-47752250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 259

               
               
               Conread position:1-693
               
               
               Cow position:chr4:358092-358809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:3-364
               
               
               Cow position:chr4:35071499-35071860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:3-392
               
               
               Cow position:chr4:51958833-51959219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:3-406
               
               
               Cow position:chr4:60044833-60044438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:3-477
               
               
               Cow position:chr4:18330791-18330303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 323

               
               
               Conread position:3-598
               
               
               Cow position:chr4:62558354-62557738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-600
               
               
               Cow position:chr4:30577937-30578559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-611
               
               
               Cow position:chr4:13464022-13464655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 324

               
               
               Conread position:3-627
               
               
               Cow position:chr4:15815282-15814641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-641
               
               
               Cow position:chr4:30473644-30474308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-669
               
               
               Cow position:chr4:38931581-38932259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 61

               
               
               Conread position:3-688
               
               
               Cow position:chr4:6864016-6863313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:3-689
               
               
               Cow position:chr4:4418262-4418965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:3-689
               
               
               Cow position:chr4:9040157-9040865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 171

               
               
               Conread position:3-689
               
               
               Cow position:chr4:16061492-16062207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:3-689
               
               
               Cow position:chr4:17234258-17234940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr4:29605263-29604555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:3-689
               
               
               Cow position:chr4:32214386-32215073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 170

               
               
               Conread position:3-689
               
               
               Cow position:chr4:41956977-41957680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr4:41961113-41961815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr4:44778982-44778274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:3-693
               
               
               Cow position:chr4:3128032-3128739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 221

               
               
               Conread position:3-693
               
               
               Cow position:chr4:33021416-33020708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:4-689
               
               
               Cow position:chr4:54811649-54810928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:4-693
               
               
               Cow position:chr4:37948657-37948013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 46

               
               
               Conread position:9-621
               
               
               Cow position:chr4:44067681-44067067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:9-689
               
               
               Cow position:chr4:1928406-1927716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:9-689
               
               
               Cow position:chr4:60650804-60651512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 180

               
               
               Conread position:10-689
               
               
               Cow position:chr4:47056207-47055509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:12-557
               
               
               Cow position:chr4:45269191-45268622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:14-443
               
               
               Cow position:chr4:39644943-39644525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:17-445
               
               
               Cow position:chr4:68636872-68636447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:17-678
               
               
               Cow position:chr4:21973430-21972781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:18-477
               
               
               Cow position:chr4:161393-161862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 186

               
               
               Conread position:18-551
               
               
               Cow position:chr4:56014389-56013829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 308

               
               
               Conread position:18-615
               
               
               Cow position:chr4:62171028-62171634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:403
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 175

               
               
               Conread position:18-638
               
               
               Cow position:chr4:59356627-59356028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:18-672
               
               
               Cow position:chr4:6445334-6444659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:445
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 320

               
               
               Conread position:18-692
               
               
               Cow position:chr4:18100683-18099984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:18-693
               
               
               Cow position:chr4:12606653-12605947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 186

               
               
               Conread position:18-732
               
               
               Cow position:chr4:24135454-24134726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 30

               
               
               Conread position:20-678
               
               
               Cow position:chr4:68809365-68810030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:20-689
               
               
               Cow position:chr4:31563012-31562312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:34-477
               
               
               Cow position:chr4:2227731-2227279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:38-477
               
               
               Cow position:chr4:1437248-1436795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:45-541
               
               
               Cow position:chr4:20788825-20789339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:45-689
               
               
               Cow position:chr4:453047-453668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 69

               
               
               Conread position:45-689
               
               
               Cow position:chr4:2264448-2263790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 138

               
               
               Conread position:45-707
               
               
               Cow position:chr4:41977390-41976710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 278

               
               
               Conread position:54-663
               
               
               Cow position:chr4:605877-606506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr4:9356504-9357157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-693
               
               
               Cow position:chr4:8677069-8677725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:59-654
               
               
               Cow position:chr4:43028846-43028245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:60-600
               
               
               Cow position:chr4:48752553-48753092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:62-390
               
               
               Cow position:chr4:44686506-44686179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:67-533
               
               
               Cow position:chr4:43834644-43835130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 253

               
               
               Conread position:67-677
               
               
               Cow position:chr4:51275149-51274521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:401
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 187

               
               
               Conread position:69-395
               
               
               Cow position:chr4:37493269-37493588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:70-662
               
               
               Cow position:chr4:11105403-11104787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 255

               
               
               Conread position:74-455
               
               
               Cow position:chr4:38901824-38901436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:74-455
               
               
               Cow position:chr4:38907774-38908162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:75-477
               
               
               Cow position:chr4:10122135-10121725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:78-678
               
               
               Cow position:chr4:5913651-5914237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:80-477
               
               
               Cow position:chr4:5442213-5441806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 242

               
               
               Conread position:80-669
               
               
               Cow position:chr4:49827328-49827915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:391
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:82-468
               
               
               Cow position:chr4:49825004-49825403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 6

               
               
               Conread position:83-689
               
               
               Cow position:chr4:9005438-9004813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 239

               
               
               Conread position:85-663
               
               
               Cow position:chr4:4115974-4116545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:93-714
               
               
               Cow position:chr4:26626268-26625656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:416
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):227, 51

               
               
               Conread position:94-585
               
               
               Cow position:chr4:40438214-40437709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 21

               
               
               Conread position:94-678
               
               
               Cow position:chr4:1188046-1187443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:96-674
               
               
               Cow position:chr4:8993203-8993790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:97-477
               
               
               Cow position:chr4:12584315-12583925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 222

               
               
               Conread position:100-446
               
               
               Cow position:chr4:25823905-25823560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:116-402
               
               
               Cow position:chr4:9483516-9483227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:120-693
               
               
               Cow position:chr4:62907686-62907097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:124-678
               
               
               Cow position:chr4:52961353-52960807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:124-689
               
               
               Cow position:chr4:36026931-36026351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:124-692
               
               
               Cow position:chr4:17776420-17775847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:125-692
               
               
               Cow position:chr4:67601320-67600747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:382
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):231, 67

               
               
               Conread position:130-620
               
               
               Cow position:chr4:1028879-1028369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 188

               
               
               Conread position:135-678
               
               
               Cow position:chr4:20242510-20243066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 179

               
               
               Conread position:136-627
               
               
               Cow position:chr4:8934969-8935475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:331
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):31, 45

               
               
               Conread position:139-689
               
               
               Cow position:chr4:27519018-27518453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:147-678
               
               
               Cow position:chr4:39933756-39934310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:369
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:152-709
               
               
               Cow position:chr4:35928850-35929425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 167

               
               
               Conread position:157-689
               
               
               Cow position:chr4:27881264-27881811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 161

               
               
               Conread position:165-689
               
               
               Cow position:chr4:67393609-67394146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:166-451
               
               
               Cow position:chr4:47749707-47749983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):230, 30

               
               
               Conread position:166-689
               
               
               Cow position:chr4:5579409-5578873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 95

               
               
               Conread position:166-689
               
               
               Cow position:chr4:17920576-17920035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 155

               
               
               Conread position:166-693
               
               
               Cow position:chr4:8673115-8673662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:361
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:170-673
               
               
               Cow position:chr4:15874237-15873729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 128

               
               
               Conread position:170-693
               
               
               Cow position:chr4:3970798-3971312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 26

               
               
               Conread position:182-446
               
               
               Cow position:chr4:19831702-19831959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):216, 33

               
               
               Conread position:183-689
               
               
               Cow position:chr4:54148006-54147494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 135

               
               
               Conread position:188-456
               
               
               Cow position:chr4:23049470-23049202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):208, 38

               
               
               Conread position:188-690
               
               
               Cow position:chr4:66174895-66174403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:343
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):158, 45

               
               
               Conread position:193-693
               
               
               Cow position:chr4:31485573-31485058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 124

               
               
               Conread position:212-696
               
               
               Cow position:chr4:32000017-32000498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:337
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):182, 91

               
               
               Conread position:213-478
               
               
               Cow position:chr4:9169730-9169466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):183, 104

               
               
               Conread position:214-666
               
               
               Cow position:chr4:76119-75672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):177, 86

               
               
               Conread position:216-689
               
               
               Cow position:chr4:14186040-14186526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):155, 97

               
               
               Conread position:220-651
               
               
               Cow position:chr4:11318435-11318859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 71

               
               
               Conread position:227-689
               
               
               Cow position:chr4:57987187-57987663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 90

               
               
               Conread position:234-471
               
               
               Cow position:chr4:1500668-1500422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:249-675
               
               
               Cow position:chr4:11498338-11498758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):119, 50

               
               
               Conread position:251-689
               
               
               Cow position:chr4:38153810-38153385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:252-559
               
               
               Cow position:chr4:20642592-20642902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):146, 63

               
               
               Conread position:252-689
               
               
               Cow position:chr4:54932122-54931687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:252-693
               
               
               Cow position:chr4:47263245-47263701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 65

               
               
               Conread position:255-693
               
               
               Cow position:chr4:55540372-55539928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):142, 45

               
               
               Conread position:257-693
               
               
               Cow position:chr4:42862671-42863113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:265-689
               
               
               Cow position:chr4:27336694-27337131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:270-689
               
               
               Cow position:chr4:40697981-40697548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:270-689
               
               
               Cow position:chr4:58291227-58291660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:270-693
               
               
               Cow position:chr4:21341559-21341997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:272-693
               
               
               Cow position:chr4:7778888-7779324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:276-689
               
               
               Cow position:chr4:22491775-22492194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:281-483
               
               
               Cow position:chr4:27733818-27733616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:285-650
               
               
               Cow position:chr4:532546-532927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:286-678
               
               
               Cow position:chr4:18301741-18301331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:288-678
               
               
               Cow position:chr4:65890306-65890703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 29

               
               
               Conread position:290-509
               
               
               Cow position:chr4:64074608-64074388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:311-674
               
               
               Cow position:chr4:19206225-19206601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:316-423
               
               
               Cow position:chr4:46491291-46491397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:328-675
               
               
               Cow position:chr4:45196697-45197058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):5, 90

               
               
               Conread position:333-675
               
               
               Cow position:chr4:37442370-37442706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):61, 120

               
               
               Conread position:340-574
               
               
               Cow position:chr4:49990298-49990059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 145

               
               
               Conread position:340-689
               
               
               Cow position:chr4:21298228-21297862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 193

               
               
               Conread position:355-686
               
               
               Cow position:chr4:17821098-17821446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 178

               
               
               Conread position:357-692
               
               
               Cow position:chr4:27539239-27539587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 210

               
               
               Conread position:362-689
               
               
               Cow position:chr4:27891648-27891992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:368-689
               
               
               Cow position:chr4:18266673-18267011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:369-681
               
               
               Cow position:chr4:22316311-22316638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 168

               
               
               Conread position:374-692
               
               
               Cow position:chr4:25227798-25228110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:376-696
               
               
               Cow position:chr4:48732269-48732602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:386-689
               
               
               Cow position:chr4:6547640-6547954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 188

               
               
               Conread position:386-689
               
               
               Cow position:chr4:10424097-10424411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:402-689
               
               
               Cow position:chr4:23646583-23646287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:409-689
               
               
               Cow position:chr4:18004345-18004633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:433-689
               
               
               Cow position:chr4:29093401-29093133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:1-477
               
               
               Cow position:chr5:47342032-47342512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:1-480
               
               
               Cow position:chr5:31134688-31134196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:324
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:1-493
               
               
               Cow position:chr5:40347974-40347463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:1-494
               
               
               Cow position:chr5:64010545-64010043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:1-634
               
               
               Cow position:chr5:42043216-42043859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:1-665
               
               
               Cow position:chr5:54621938-54622611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:1-675
               
               
               Cow position:chr5:27177955-27178656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 312

               
               
               Conread position:1-678
               
               
               Cow position:chr5:3252831-3252148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 328

               
               
               Conread position:1-678
               
               
               Cow position:chr5:6189216-6189907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:1-678
               
               
               Cow position:chr5:25929378-25928688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:1-678
               
               
               Cow position:chr5:49756011-49755317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:1-678
               
               
               Cow position:chr5:54786799-54786098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:1-688
               
               
               Cow position:chr5:10921154-10921863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:1-696
               
               
               Cow position:chr5:32756131-32755418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:2-689
               
               
               Cow position:chr5:4349690-4348969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 328

               
               
               Conread position:2-689
               
               
               Cow position:chr5:27655082-27655763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:3-392
               
               
               Cow position:chr5:58141929-58141537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 182

               
               
               Conread position:3-439
               
               
               Cow position:chr5:21786383-21785936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:3-477
               
               
               Cow position:chr5:10513963-10513475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr5:27550148-27549660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 198

               
               
               Conread position:3-477
               
               
               Cow position:chr5:50688123-50688611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-477
               
               
               Cow position:chr5:74035845-74036316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:3-485
               
               
               Cow position:chr5:49131520-49132000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:328
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):46, 74

               
               
               Conread position:3-607
               
               
               Cow position:chr5:46003329-46002709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:3-620
               
               
               Cow position:chr5:444835-445469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 263

               
               
               Conread position:3-624
               
               
               Cow position:chr5:18703972-18704617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:3-627
               
               
               Cow position:chr5:27196769-27196120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 294

               
               
               Conread position:3-633
               
               
               Cow position:chr5:18120162-18119513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-657
               
               
               Cow position:chr5:59278456-59279129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 182

               
               
               Conread position:3-673
               
               
               Cow position:chr5:32953638-32954332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:3-681
               
               
               Cow position:chr5:18884270-18883594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 161

               
               
               Conread position:3-687
               
               
               Cow position:chr5:45180782-45180071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 341

               
               
               Conread position:3-688
               
               
               Cow position:chr5:4964062-4963362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:3-688
               
               
               Cow position:chr5:23958013-23957308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 320

               
               
               Conread position:3-689
               
               
               Cow position:chr5:443999-443290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr5:1339610-1338902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 169

               
               
               Conread position:3-689
               
               
               Cow position:chr5:4435190-4434485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-689
               
               
               Cow position:chr5:5105535-5106243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr5:5925649-5924950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:3-689
               
               
               Cow position:chr5:9003799-9003091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:3-689
               
               
               Cow position:chr5:9092108-9091402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 74

               
               
               Conread position:3-689
               
               
               Cow position:chr5:14543990-14543282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr5:26076889-26076182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr5:30156669-30157379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr5:31120895-31120187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 322

               
               
               Conread position:3-689
               
               
               Cow position:chr5:37379404-37380106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:3-689
               
               
               Cow position:chr5:37734684-37735395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 338

               
               
               Conread position:3-689
               
               
               Cow position:chr5:38661644-38662351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 212

               
               
               Conread position:3-689
               
               
               Cow position:chr5:46778832-46779535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr5:51166996-51166290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr5:54928602-54927900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 223

               
               
               Conread position:3-689
               
               
               Cow position:chr5:55833533-55832816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:3-689
               
               
               Cow position:chr5:57337098-57336394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:3-689
               
               
               Cow position:chr5:58198334-58199029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 44

               
               
               Conread position:3-692
               
               
               Cow position:chr5:30581649-30582347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 236

               
               
               Conread position:3-693
               
               
               Cow position:chr5:6586150-6585429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr5:42507073-42507782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-698
               
               
               Cow position:chr5:32165587-32164884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:4-655
               
               
               Cow position:chr5:28222914-28222253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 252

               
               
               Conread position:4-689
               
               
               Cow position:chr5:51745539-51746243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:7-657
               
               
               Cow position:chr5:49521035-49521699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 283

               
               
               Conread position:8-623
               
               
               Cow position:chr5:55914228-55914860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:411
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:9-473
               
               
               Cow position:chr5:53150712-53150246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:9-689
               
               
               Cow position:chr5:29633745-29634448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:10-396
               
               
               Cow position:chr5:54659277-54658904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:12-689
               
               
               Cow position:chr5:12132913-12133613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 290

               
               
               Conread position:17-627
               
               
               Cow position:chr5:29673578-29674181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:17-678
               
               
               Cow position:chr5:59770373-59771057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 256

               
               
               Conread position:17-681
               
               
               Cow position:chr5:40897986-40897338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 36

               
               
               Conread position:18-419
               
               
               Cow position:chr5:1229113-1229516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:18-477
               
               
               Cow position:chr5:32775138-32775611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 308

               
               
               Conread position:18-551
               
               
               Cow position:chr5:14877798-14877246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:360
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:18-626
               
               
               Cow position:chr5:28948413-28947781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:18-655
               
               
               Cow position:chr5:7141776-7141124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 287

               
               
               Conread position:18-678
               
               
               Cow position:chr5:48226251-48225568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 311

               
               
               Conread position:18-689
               
               
               Cow position:chr5:47470710-47471412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:19-468
               
               
               Cow position:chr5:12502837-12502384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 251

               
               
               Conread position:19-625
               
               
               Cow position:chr5:8177435-8178065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 307

               
               
               Conread position:19-689
               
               
               Cow position:chr5:25902142-25901455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 310

               
               
               Conread position:25-707
               
               
               Cow position:chr5:56960892-56961598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:451
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 287

               
               
               Conread position:29-492
               
               
               Cow position:chr5:51768467-51768001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:34-396
               
               
               Cow position:chr5:7513427-7513788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:45-396
               
               
               Cow position:chr5:57969187-57969533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 166

               
               
               Conread position:45-478
               
               
               Cow position:chr5:26100075-26100513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:45-603
               
               
               Cow position:chr5:41467956-41468521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:378
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):77, 240

               
               
               Conread position:45-689
               
               
               Cow position:chr5:2916822-2917481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 277

               
               
               Conread position:45-689
               
               
               Cow position:chr5:16961038-16960403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:47-398
               
               
               Cow position:chr5:6537329-6537670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):71, 66

               
               
               Conread position:54-477
               
               
               Cow position:chr5:10773736-10773307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-635
               
               
               Cow position:chr5:57614803-57614224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr5:48534250-48534876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr5:52823840-52823188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr5:72856248-72856893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 6

               
               
               Conread position:54-693
               
               
               Cow position:chr5:37610575-37609918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:57-675
               
               
               Cow position:chr5:72346751-72346105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:60-623
               
               
               Cow position:chr5:10097679-10097113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:63-437
               
               
               Cow position:chr5:33281845-33281471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:67-599
               
               
               Cow position:chr5:15361544-15362094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:68-663
               
               
               Cow position:chr5:49489400-49489992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:409
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:73-707
               
               
               Cow position:chr5:57364379-57363743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:74-709
               
               
               Cow position:chr5:68256147-68255502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:79-693
               
               
               Cow position:chr5:22554519-22555160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:82-478
               
               
               Cow position:chr5:25022289-25022681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:85-645
               
               
               Cow position:chr5:20778294-20777735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:93-391
               
               
               Cow position:chr5:28571000-28571299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:95-392
               
               
               Cow position:chr5:14523396-14523098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):43, 199

               
               
               Conread position:97-477
               
               
               Cow position:chr5:26512249-26511859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 211

               
               
               Conread position:106-689
               
               
               Cow position:chr5:41066442-41067044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 216

               
               
               Conread position:120-689
               
               
               Cow position:chr5:6772003-6772587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:124-623
               
               
               Cow position:chr5:21522293-21521777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:124-627
               
               
               Cow position:chr5:4755283-4754769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:124-644
               
               
               Cow position:chr5:73220747-73220211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:134-709
               
               
               Cow position:chr5:47740516-47741066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:380
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:135-633
               
               
               Cow position:chr5:1641341-1640826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:135-715
               
               
               Cow position:chr5:26404447-26403863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:139-689
               
               
               Cow position:chr5:48025732-48026288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 175

               
               
               Conread position:147-364
               
               
               Cow position:chr5:21919983-21920193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:147-434
               
               
               Cow position:chr5:16910622-16910331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:147-677
               
               
               Cow position:chr5:61993993-61994535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 365

               
               
               Conread position:148-630
               
               
               Cow position:chr5:12729674-12729177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 173

               
               
               Conread position:149-678
               
               
               Cow position:chr5:64845794-64845254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 156

               
               
               Conread position:149-689
               
               
               Cow position:chr5:67653796-67654345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 169

               
               
               Conread position:149-689
               
               
               Cow position:chr5:70784414-70783863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:152-681
               
               
               Cow position:chr5:39245818-39245284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:356
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):18, 169

               
               
               Conread position:153-442
               
               
               Cow position:chr5:11288019-11287736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):241, 10

               
               
               Conread position:154-623
               
               
               Cow position:chr5:54783850-54784344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 165

               
               
               Conread position:155-441
               
               
               Cow position:chr5:41647899-41648183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:166-689
               
               
               Cow position:chr5:3970005-3970544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 151

               
               
               Conread position:168-477
               
               
               Cow position:chr5:41021521-41021216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):223, 65

               
               
               Conread position:168-636
               
               
               Cow position:chr5:38285781-38286253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 10

               
               
               Conread position:172-491
               
               
               Cow position:chr5:27490449-27490770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 144

               
               
               Conread position:189-627
               
               
               Cow position:chr5:37084368-37083914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 128

               
               
               Conread position:207-539
               
               
               Cow position:chr5:35207247-35206904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):187, 88

               
               
               Conread position:216-678
               
               
               Cow position:chr5:10543135-10542660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 31

               
               
               Conread position:216-689
               
               
               Cow position:chr5:14637046-14636559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 101

               
               
               Conread position:220-362
               
               
               Cow position:chr5:34616713-34616573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:224-690
               
               
               Cow position:chr5:62545907-62546375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):177, 90

               
               
               Conread position:224-715
               
               
               Cow position:chr5:65571589-65572064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:227-689
               
               
               Cow position:chr5:54930704-54930228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 76

               
               
               Conread position:231-612
               
               
               Cow position:chr5:28026006-28026399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):158, 88

               
               
               Conread position:231-709
               
               
               Cow position:chr5:42745322-42745813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 90

               
               
               Conread position:235-495
               
               
               Cow position:chr5:51817895-51818163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:235-678
               
               
               Cow position:chr5:57920476-57920930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:236-524
               
               
               Cow position:chr5:34928683-34928392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):159, 48

               
               
               Conread position:236-723
               
               
               Cow position:chr5:27481820-27482306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:320
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):171, 26

               
               
               Conread position:240-559
               
               
               Cow position:chr5:31284652-31284979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):154, 77

               
               
               Conread position:240-693
               
               
               Cow position:chr5:59449370-59448893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 348

               
               
               Conread position:241-530
               
               
               Cow position:chr5:34146370-34146070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):155, 50

               
               
               Conread position:244-669
               
               
               Cow position:chr5:13531333-13530899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):152, 73

               
               
               Conread position:249-627
               
               
               Cow position:chr5:1643336-1643730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):80, 65

               
               
               Conread position:251-689
               
               
               Cow position:chr5:54361866-54362317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 66

               
               
               Conread position:251-696
               
               
               Cow position:chr5:76141459-76141916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:253-434
               
               
               Cow position:chr5:36874167-36873982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):138, 29

               
               
               Conread position:254-666
               
               
               Cow position:chr5:41952503-41952076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 63

               
               
               Conread position:262-689
               
               
               Cow position:chr5:66909685-66910123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:264-659
               
               
               Cow position:chr5:60567-60155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:270-519
               
               
               Cow position:chr5:49911331-49911585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:270-658
               
               
               Cow position:chr5:10813794-10814197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:270-678
               
               
               Cow position:chr5:52606035-52605615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 44

               
               
               Conread position:276-662
               
               
               Cow position:chr5:882102-881709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:276-693
               
               
               Cow position:chr5:3440929-3441344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:283-663
               
               
               Cow position:chr5:17646473-17646084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:283-689
               
               
               Cow position:chr5:6456064-6455644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:287-693
               
               
               Cow position:chr5:18900939-18901358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:307-558
               
               
               Cow position:chr5:24484084-24484351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:307-623
               
               
               Cow position:chr5:21139646-21139311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:318-689
               
               
               Cow position:chr5:44482237-44482623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:324-709
               
               
               Cow position:chr5:47360857-47361259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:327-675
               
               
               Cow position:chr5:34962474-34962126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:333-641
               
               
               Cow position:chr5:67130277-67130582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:333-689
               
               
               Cow position:chr5:10299114-10299487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr5:26466290-26466663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 240

               
               
               Conread position:334-707
               
               
               Cow position:chr5:34285803-34285433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:336-678
               
               
               Cow position:chr5:41229393-41229037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):58, 196

               
               
               Conread position:337-669
               
               
               Cow position:chr5:31785207-31785543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 198

               
               
               Conread position:337-677
               
               
               Cow position:chr5:26348835-26348482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:338-636
               
               
               Cow position:chr5:23350277-23350582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:339-661
               
               
               Cow position:chr5:69519257-69519594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 249

               
               
               Conread position:339-690
               
               
               Cow position:chr5:68591484-68591844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:347-678
               
               
               Cow position:chr5:6840561-6840211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 190

               
               
               Conread position:348-709
               
               
               Cow position:chr5:26120104-26120473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):38, 185

               
               
               Conread position:367-681
               
               
               Cow position:chr5:48575134-48574806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 200

               
               
               Conread position:384-689
               
               
               Cow position:chr5:49970542-49970858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:386-605
               
               
               Cow position:chr5:39747719-39747950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 187

               
               
               Conread position:386-689
               
               
               Cow position:chr5:18667012-18667326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 140

               
               
               Conread position:386-689
               
               
               Cow position:chr5:24633333-24633020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:386-689
               
               
               Cow position:chr5:50675882-50675568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:386-689
               
               
               Cow position:chr5:53076162-53075851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:386-693
               
               
               Cow position:chr5:294970-295289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:386-700
               
               
               Cow position:chr5:48016925-48017254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 183

               
               
               Conread position:393-633
               
               
               Cow position:chr5:15676628-15676882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:393-689
               
               
               Cow position:chr5:46817387-46817083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:394-678
               
               
               Cow position:chr5:60713301-60713012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:395-689
               
               
               Cow position:chr5:2203677-2203372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:400-688
               
               
               Cow position:chr5:70348128-70348425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:406-663
               
               
               Cow position:chr5:33791990-33792238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:406-709
               
               
               Cow position:chr5:53834381-53834695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 166

               
               
               Conread position:408-678
               
               
               Cow position:chr5:21185600-21185322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:410-707
               
               
               Cow position:chr5:50166256-50166562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:427-689
               
               
               Cow position:chr5:18119227-18118956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:427-693
               
               
               Cow position:chr5:11357874-11358150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:432-690
               
               
               Cow position:chr5:51942409-51942668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:432-690
               
               
               Cow position:chr5:51947362-51947621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:1-382
               
               
               Cow position:chr6:29281750-29282118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:1-390
               
               
               Cow position:chr6:15179660-15180043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:1-390
               
               
               Cow position:chr6:38612091-38611704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:1-442
               
               
               Cow position:chr6:28135382-28135836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 138

               
               
               Conread position:1-455
               
               
               Cow position:chr6:27527539-27527072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 312

               
               
               Conread position:1-471
               
               
               Cow position:chr6:14264279-14264774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 114

               
               
               Conread position:1-493
               
               
               Cow position:chr6:28845684-28845179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:1-494
               
               
               Cow position:chr6:39956514-39957018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 182

               
               
               Conread position:1-539
               
               
               Cow position:chr6:39435474-39434915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 344

               
               
               Conread position:1-678
               
               
               Cow position:chr6:3887059-3886356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-678
               
               
               Cow position:chr6:6720442-6721119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 189

               
               
               Conread position:1-678
               
               
               Cow position:chr6:27474866-27475560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:1-678
               
               
               Cow position:chr6:28103415-28102717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 233

               
               
               Conread position:1-678
               
               
               Cow position:chr6:51149388-51150091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 326

               
               
               Conread position:1-678
               
               
               Cow position:chr6:64718770-64719467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 171

               
               
               Conread position:1-689
               
               
               Cow position:chr6:916492-917201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 173

               
               
               Conread position:1-689
               
               
               Cow position:chr6:1536155-1536863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 331

               
               
               Conread position:1-689
               
               
               Cow position:chr6:10235658-10236354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:1-689
               
               
               Cow position:chr6:25791251-25790541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:1-689
               
               
               Cow position:chr6:36530734-36531431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 172

               
               
               Conread position:1-689
               
               
               Cow position:chr6:40000009-39999299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-693
               
               
               Cow position:chr6:3485947-3485256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 321

               
               
               Conread position:1-693
               
               
               Cow position:chr6:53936179-53935471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 233

               
               
               Conread position:1-711
               
               
               Cow position:chr6:32488462-32487750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:2-615
               
               
               Cow position:chr6:18496774-18497386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 66

               
               
               Conread position:2-678
               
               
               Cow position:chr6:40159054-40158367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 203

               
               
               Conread position:2-689
               
               
               Cow position:chr6:41230947-41231646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:3-399
               
               
               Cow position:chr6:13979212-13979614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr6:2377153-2377641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 327

               
               
               Conread position:3-477
               
               
               Cow position:chr6:12971468-12970980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-477
               
               
               Cow position:chr6:28400795-28400314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-490
               
               
               Cow position:chr6:617613-618106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:3-539
               
               
               Cow position:chr6:9757168-9756607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 239

               
               
               Conread position:3-633
               
               
               Cow position:chr6:41390003-41389352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-663
               
               
               Cow position:chr6:55238144-55238830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-678
               
               
               Cow position:chr6:6162581-6163279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:3-678
               
               
               Cow position:chr6:25375642-25374959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 289

               
               
               Conread position:3-678
               
               
               Cow position:chr6:42266185-42266887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:3-689
               
               
               Cow position:chr6:1508052-1507352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:3-689
               
               
               Cow position:chr6:3151678-3152376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:3-689
               
               
               Cow position:chr6:7138882-7138182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr6:11870476-11869776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr6:13308932-13308238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr6:15138717-15138015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr6:16050839-16050134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:3-689
               
               
               Cow position:chr6:17595836-17595127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr6:21833197-21832502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:3-689
               
               
               Cow position:chr6:22738248-22737548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 275

               
               
               Conread position:3-689
               
               
               Cow position:chr6:28001932-28001233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 310

               
               
               Conread position:3-689
               
               
               Cow position:chr6:28489116-28488420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr6:33465415-33466116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 183

               
               
               Conread position:3-689
               
               
               Cow position:chr6:37387031-37387736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-689
               
               
               Cow position:chr6:39332079-39331373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 321

               
               
               Conread position:3-689
               
               
               Cow position:chr6:39911777-39912482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 233

               
               
               Conread position:3-689
               
               
               Cow position:chr6:50720560-50721256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr6:60378612-60379321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr6:66189330-66188642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr6:328910-328200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr6:11019110-11019820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr6:12663864-12663152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 169

               
               
               Conread position:3-693
               
               
               Cow position:chr6:19104460-19103745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 338

               
               
               Conread position:3-693
               
               
               Cow position:chr6:27151991-27151278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 320

               
               
               Conread position:3-693
               
               
               Cow position:chr6:62577733-62577019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr6:62664225-62664938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 308

               
               
               Conread position:3-693
               
               
               Cow position:chr6:65820133-65819417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:4-478
               
               
               Cow position:chr6:17888479-17888002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:5-641
               
               
               Cow position:chr6:1275542-1274877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 203

               
               
               Conread position:9-689
               
               
               Cow position:chr6:12628374-12629060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:9-689
               
               
               Cow position:chr6:20351634-20350931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 303

               
               
               Conread position:10-460
               
               
               Cow position:chr6:65905819-65905377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):157, 7

               
               
               Conread position:11-689
               
               
               Cow position:chr6:2876574-2875873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 315

               
               
               Conread position:12-689
               
               
               Cow position:chr6:43798440-43797743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:17-419
               
               
               Cow position:chr6:27941200-27941594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:17-689
               
               
               Cow position:chr6:47040735-47040051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:17-707
               
               
               Cow position:chr6:7161277-7161952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:17-707
               
               
               Cow position:chr6:62852069-62852760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:18-477
               
               
               Cow position:chr6:67212308-67211844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:18-663
               
               
               Cow position:chr6:19329474-19328825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 152

               
               
               Conread position:18-690
               
               
               Cow position:chr6:7759754-7759094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:25-392
               
               
               Cow position:chr6:9264858-9264492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:26-399
               
               
               Cow position:chr6:53810101-53810463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:27-693
               
               
               Cow position:chr6:26668551-26667861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 299

               
               
               Conread position:28-689
               
               
               Cow position:chr6:9738790-9738096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 304

               
               
               Conread position:29-449
               
               
               Cow position:chr6:19530230-19530656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:34-392
               
               
               Cow position:chr6:10678313-10678666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):6, 248

               
               
               Conread position:45-477
               
               
               Cow position:chr6:19769119-19769538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:45-598
               
               
               Cow position:chr6:17353802-17353247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:45-627
               
               
               Cow position:chr6:31010319-31009710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:45-681
               
               
               Cow position:chr6:18751689-18751062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:409
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 136

               
               
               Conread position:45-689
               
               
               Cow position:chr6:10267589-10266933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:45-692
               
               
               Cow position:chr6:63405301-63405970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 122

               
               
               Conread position:45-707
               
               
               Cow position:chr6:64535709-64536362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:51-554
               
               
               Cow position:chr6:64252177-64251664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:54-477
               
               
               Cow position:chr6:51895574-51895149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:54-559
               
               
               Cow position:chr6:35967961-35967435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:54-693
               
               
               Cow position:chr6:56452590-56451932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 6

               
               
               Conread position:59-705
               
               
               Cow position:chr6:6159183-6159830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:60-501
               
               
               Cow position:chr6:225395-224949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:60-636
               
               
               Cow position:chr6:15031345-15030747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 48

               
               
               Conread position:69-678
               
               
               Cow position:chr6:58952596-58951975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:69-688
               
               
               Cow position:chr6:31225988-31226627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:76-689
               
               
               Cow position:chr6:19713704-19713076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 163

               
               
               Conread position:77-540
               
               
               Cow position:chr6:28518388-28517918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 191

               
               
               Conread position:85-692
               
               
               Cow position:chr6:65867324-65867944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:89-689
               
               
               Cow position:chr6:127593-126974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 233

               
               
               Conread position:90-395
               
               
               Cow position:chr6:7176772-7176478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:90-678
               
               
               Cow position:chr6:30806316-30805718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:90-693
               
               
               Cow position:chr6:14305181-14305787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:90-707
               
               
               Cow position:chr6:41050529-41051173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 274

               
               
               Conread position:95-675
               
               
               Cow position:chr6:10611373-10611973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:104-689
               
               
               Cow position:chr6:26772567-26771963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:119-455
               
               
               Cow position:chr6:52194394-52194054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 42

               
               
               Conread position:119-627
               
               
               Cow position:chr6:43186675-43187203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:120-693
               
               
               Cow position:chr6:6120418-6119823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 211

               
               
               Conread position:124-478
               
               
               Cow position:chr6:24624815-24624458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:128-678
               
               
               Cow position:chr6:41407990-41408554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:135-477
               
               
               Cow position:chr6:34018002-34018350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:135-650
               
               
               Cow position:chr6:43778115-43778639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:143-476
               
               
               Cow position:chr6:63771806-63771478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 21

               
               
               Conread position:149-620
               
               
               Cow position:chr6:61179611-61179142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 165

               
               
               Conread position:149-689
               
               
               Cow position:chr6:45936900-45937449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 169

               
               
               Conread position:157-392
               
               
               Cow position:chr6:662382-662147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 168

               
               
               Conread position:157-478
               
               
               Cow position:chr6:32344652-32344330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):9, 140

               
               
               Conread position:157-658
               
               
               Cow position:chr6:3685568-3686079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:166-660
               
               
               Cow position:chr6:22679476-22679986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 137

               
               
               Conread position:166-689
               
               
               Cow position:chr6:33490433-33489896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 137

               
               
               Conread position:166-693
               
               
               Cow position:chr6:11354546-11354015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:172-678
               
               
               Cow position:chr6:44950831-44950310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:174-627
               
               
               Cow position:chr6:6474808-6474349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 143

               
               
               Conread position:177-678
               
               
               Cow position:chr6:36230897-36230377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:188-477
               
               
               Cow position:chr6:21711204-21711498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):216, 115

               
               
               Conread position:191-693
               
               
               Cow position:chr6:43087946-43087433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 112

               
               
               Conread position:193-689
               
               
               Cow position:chr6:28185682-28185161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 124

               
               
               Conread position:200-660
               
               
               Cow position:chr6:39359535-39359068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:207-689
               
               
               Cow position:chr6:26325537-26325041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 110

               
               
               Conread position:211-678
               
               
               Cow position:chr6:32447510-32447031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):243, 89

               
               
               Conread position:216-678
               
               
               Cow position:chr6:27761376-27761851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 64

               
               
               Conread position:225-689
               
               
               Cow position:chr6:31913495-31913017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 78

               
               
               Conread position:227-703
               
               
               Cow position:chr6:68827155-68826675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 11

               
               
               Conread position:234-707
               
               
               Cow position:chr6:53100044-53100513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):199, 48

               
               
               Conread position:235-469
               
               
               Cow position:chr6:64125985-64125752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:237-693
               
               
               Cow position:chr6:45975201-45975662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):167, 66

               
               
               Conread position:238-761
               
               
               Cow position:chr6:1888742-1888202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:357
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):158, 79

               
               
               Conread position:241-693
               
               
               Cow position:chr6:38989116-38988649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:249-650
               
               
               Cow position:chr6:55385973-55386379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):147, 65

               
               
               Conread position:252-689
               
               
               Cow position:chr6:50486067-50485626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 65

               
               
               Conread position:254-689
               
               
               Cow position:chr6:27172540-27172987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):140, 10

               
               
               Conread position:258-681
               
               
               Cow position:chr6:365604-366037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):136, 59

               
               
               Conread position:262-677
               
               
               Cow position:chr6:24045955-24045526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:265-689
               
               
               Cow position:chr6:15784252-15783822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:268-478
               
               
               Cow position:chr6:44624794-44624594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):155, 45

               
               
               Conread position:304-593
               
               
               Cow position:chr6:66838888-66839197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:307-660
               
               
               Cow position:chr6:25217718-25218084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:310-689
               
               
               Cow position:chr6:11168270-11168665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:311-601
               
               
               Cow position:chr6:9586826-9587137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 280

               
               
               Conread position:316-674
               
               
               Cow position:chr6:1734952-1735310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:316-690
               
               
               Cow position:chr6:14498177-14497797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:320-714
               
               
               Cow position:chr6:41414568-41414156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:321-678
               
               
               Cow position:chr6:15276464-15276091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:331-689
               
               
               Cow position:chr6:40550916-40550542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 257

               
               
               Conread position:333-651
               
               
               Cow position:chr6:6121560-6121236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 84

               
               
               Conread position:333-689
               
               
               Cow position:chr6:888342-888715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-689
               
               
               Cow position:chr6:38932469-38932096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-689
               
               
               Cow position:chr6:46947605-46947976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:333-689
               
               
               Cow position:chr6:49165814-49165444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 253

               
               
               Conread position:333-689
               
               
               Cow position:chr6:49826467-49826094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr6:45724360-45723982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-693
               
               
               Cow position:chr6:47380463-47380829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 137

               
               
               Conread position:338-569
               
               
               Cow position:chr6:43103247-43103001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 238

               
               
               Conread position:340-678
               
               
               Cow position:chr6:65875489-65875132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 250

               
               
               Conread position:344-623
               
               
               Cow position:chr6:1402732-1402435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 189

               
               
               Conread position:344-623
               
               
               Cow position:chr6:1407320-1407023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 189

               
               
               Conread position:347-689
               
               
               Cow position:chr6:53543679-53543325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 181

               
               
               Conread position:353-721
               
               
               Cow position:chr6:52301545-52301929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:356-689
               
               
               Cow position:chr6:55592864-55593228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 232

               
               
               Conread position:362-689
               
               
               Cow position:chr6:18520268-18519924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:362-689
               
               
               Cow position:chr6:45480262-45479930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:366-705
               
               
               Cow position:chr6:44509884-44510240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 219

               
               
               Conread position:370-693
               
               
               Cow position:chr6:1380632-1380296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:373-689
               
               
               Cow position:chr6:6556786-6557119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 160

               
               
               Conread position:374-693
               
               
               Cow position:chr6:24632418-24632088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:386-689
               
               
               Cow position:chr6:22044164-22043850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:386-693
               
               
               Cow position:chr6:9234356-9234674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 142

               
               
               Conread position:409-689
               
               
               Cow position:chr6:39897819-39898108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 116

               
               
               Conread position:1-394
               
               
               Cow position:chr7:34220032-34219651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:1-399
               
               
               Cow position:chr7:63925160-63924770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:1-409
               
               
               Cow position:chr7:42872663-42873086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 52

               
               
               Conread position:1-431
               
               
               Cow position:chr7:14082570-14082149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:1-431
               
               
               Cow position:chr7:22717578-22717136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:1-473
               
               
               Cow position:chr7:51016775-51017259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:1-477
               
               
               Cow position:chr7:8142433-8141944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:1-478
               
               
               Cow position:chr7:19168935-19168444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 311

               
               
               Conread position:1-502
               
               
               Cow position:chr7:1214176-1214692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 232

               
               
               Conread position:1-600
               
               
               Cow position:chr7:50880616-50881227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:1-602
               
               
               Cow position:chr7:62951884-62952510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:1-615
               
               
               Cow position:chr7:68262872-68263497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:1-623
               
               
               Cow position:chr7:537301-536654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:1-627
               
               
               Cow position:chr7:24421899-24422539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 206

               
               
               Conread position:1-659
               
               
               Cow position:chr7:34667463-34668110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 15

               
               
               Conread position:1-663
               
               
               Cow position:chr7:48637261-48637944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:1-672
               
               
               Cow position:chr7:21314432-21315111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:1-678
               
               
               Cow position:chr7:42225257-42224553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 152

               
               
               Conread position:1-678
               
               
               Cow position:chr7:52449908-52449220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 6

               
               
               Conread position:1-688
               
               
               Cow position:chr7:443719-443011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 170

               
               
               Conread position:1-688
               
               
               Cow position:chr7:59773854-59774560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 268

               
               
               Conread position:1-689
               
               
               Cow position:chr7:1368156-1367445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr7:3127844-3128554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr7:8742735-8742027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:1-689
               
               
               Cow position:chr7:33069961-33069258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:1-689
               
               
               Cow position:chr7:45613933-45613226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-689
               
               
               Cow position:chr7:47191202-47190493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr7:53363636-53362943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 51

               
               
               Conread position:1-693
               
               
               Cow position:chr7:195359-194649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:1-693
               
               
               Cow position:chr7:698053-698762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 195

               
               
               Conread position:1-693
               
               
               Cow position:chr7:21316696-21317412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:1-693
               
               
               Cow position:chr7:29472993-29473698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:1-693
               
               
               Cow position:chr7:30305375-30306071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 216

               
               
               Conread position:1-693
               
               
               Cow position:chr7:65813377-65814093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 325

               
               
               Conread position:1-726
               
               
               Cow position:chr7:736208-735451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 124

               
               
               Conread position:1-726
               
               
               Cow position:chr7:10428882-10428137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 326

               
               
               Conread position:2-650
               
               
               Cow position:chr7:14136310-14135637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 321

               
               
               Conread position:2-696
               
               
               Cow position:chr7:67496768-67497474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:3-394
               
               
               Cow position:chr7:67586317-67585931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-402
               
               
               Cow position:chr7:8337920-8338325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-688
               
               
               Cow position:chr7:20434368-20435085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:3-688
               
               
               Cow position:chr7:34488460-34489155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:3-689
               
               
               Cow position:chr7:113156-113866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 169

               
               
               Conread position:3-689
               
               
               Cow position:chr7:1442294-1441586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr7:3298127-3297430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:3-689
               
               
               Cow position:chr7:6626833-6626124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr7:11461587-11460887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:3-689
               
               
               Cow position:chr7:19273016-19272316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:3-689
               
               
               Cow position:chr7:21424824-21424118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr7:26927631-26926927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 251

               
               
               Conread position:3-689
               
               
               Cow position:chr7:27099729-27099021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr7:27571789-27572495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 243

               
               
               Conread position:3-689
               
               
               Cow position:chr7:61577592-61576877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:3-689
               
               
               Cow position:chr7:64011966-64012675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr7:64354558-64355264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 183

               
               
               Conread position:3-690
               
               
               Cow position:chr7:25442319-25443023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 51

               
               
               Conread position:3-693
               
               
               Cow position:chr7:13366-12657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:3-693
               
               
               Cow position:chr7:1331872-1331159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:3-693
               
               
               Cow position:chr7:6666042-6666755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:3-693
               
               
               Cow position:chr7:22760171-22760874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:3-693
               
               
               Cow position:chr7:37165404-37166116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:3-693
               
               
               Cow position:chr7:49604028-49603316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr7:60465261-60465974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 235

               
               
               Conread position:3-708
               
               
               Cow position:chr7:52802053-52801336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 200

               
               
               Conread position:4-689
               
               
               Cow position:chr7:46265710-46266417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 57

               
               
               Conread position:5-633
               
               
               Cow position:chr7:5437550-5436912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:7-434
               
               
               Cow position:chr7:28569254-28569688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:8-508
               
               
               Cow position:chr7:30116690-30116180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:8-693
               
               
               Cow position:chr7:66274542-66273855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:9-620
               
               
               Cow position:chr7:59458267-59458895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:9-642
               
               
               Cow position:chr7:7276956-7277615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:9-676
               
               
               Cow position:chr7:38692480-38693162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:9-689
               
               
               Cow position:chr7:1596443-1595746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:9-689
               
               
               Cow position:chr7:65557871-65557168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 316

               
               
               Conread position:12-678
               
               
               Cow position:chr7:54510641-54509971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:12-714
               
               
               Cow position:chr7:13779441-13780136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:13-479
               
               
               Cow position:chr7:11738307-11738785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:14-396
               
               
               Cow position:chr7:58349485-58349105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:17-623
               
               
               Cow position:chr7:1010452-1009848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 147

               
               
               Conread position:17-666
               
               
               Cow position:chr7:42519157-42518527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:18-689
               
               
               Cow position:chr7:21125114-21124420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 308

               
               
               Conread position:18-693
               
               
               Cow position:chr7:35276886-35276215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:18-708
               
               
               Cow position:chr7:68445151-68445852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:19-675
               
               
               Cow position:chr7:20828588-20829261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:19-693
               
               
               Cow position:chr7:69064826-69065515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:25-689
               
               
               Cow position:chr7:18865275-18864588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 287

               
               
               Conread position:25-696
               
               
               Cow position:chr7:48813687-48814375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:26-387
               
               
               Cow position:chr7:59686553-59686915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:26-675
               
               
               Cow position:chr7:42428162-42428829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 301

               
               
               Conread position:38-392
               
               
               Cow position:chr7:51921635-51921971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:40-689
               
               
               Cow position:chr7:20184473-20183815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:42-681
               
               
               Cow position:chr7:6930035-6929395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:45-390
               
               
               Cow position:chr7:30542649-30542311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:45-581
               
               
               Cow position:chr7:61156385-61156935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:363
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:45-616
               
               
               Cow position:chr7:62271397-62270832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:370
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:45-681
               
               
               Cow position:chr7:26021394-26022029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:45-689
               
               
               Cow position:chr7:56092200-56092838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:45-704
               
               
               Cow position:chr7:51193308-51193968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:51-482
               
               
               Cow position:chr7:31636914-31637370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:51-693
               
               
               Cow position:chr7:66933698-66934364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 262

               
               
               Conread position:53-471
               
               
               Cow position:chr7:955236-955678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:54-469
               
               
               Cow position:chr7:54490584-54490184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:54-474
               
               
               Cow position:chr7:14916774-14916350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:54-689
               
               
               Cow position:chr7:844499-845171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:54-689
               
               
               Cow position:chr7:19467903-19467247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:54-716
               
               
               Cow position:chr7:66572414-66571742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:59-689
               
               
               Cow position:chr7:34818659-34819308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 263

               
               
               Conread position:60-575
               
               
               Cow position:chr7:61338706-61339228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:60-689
               
               
               Cow position:chr7:6629161-6628518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:64-678
               
               
               Cow position:chr7:19097694-19097055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:64-692
               
               
               Cow position:chr7:52384597-52383960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:416
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:69-673
               
               
               Cow position:chr7:467968-467350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:69-689
               
               
               Cow position:chr7:21322875-21323511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 205

               
               
               Conread position:73-678
               
               
               Cow position:chr7:21878060-21877482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:78-689
               
               
               Cow position:chr7:57653530-57654147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:81-709
               
               
               Cow position:chr7:7283603-7284217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:84-386
               
               
               Cow position:chr7:6172140-6172438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:90-576
               
               
               Cow position:chr7:6104613-6104111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:91-657
               
               
               Cow position:chr7:27458065-27457492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:102-606
               
               
               Cow position:chr7:48861048-48860541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:103-673
               
               
               Cow position:chr7:63948470-63947877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:119-651
               
               
               Cow position:chr7:39596092-39595555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):207, 59

               
               
               Conread position:119-659
               
               
               Cow position:chr7:1601355-1600807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:120-401
               
               
               Cow position:chr7:528313-528583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:120-689
               
               
               Cow position:chr7:42302755-42302182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:122-723
               
               
               Cow position:chr7:50554399-50555039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 8

               
               
               Conread position:124-447
               
               
               Cow position:chr7:20805282-20805605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:124-476
               
               
               Cow position:chr7:66235165-66234816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:124-678
               
               
               Cow position:chr7:22342574-22342033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:374
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:124-688
               
               
               Cow position:chr7:889713-889148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 19

               
               
               Conread position:124-693
               
               
               Cow position:chr7:55689300-55688723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:129-677
               
               
               Cow position:chr7:26736048-26735484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:135-477
               
               
               Cow position:chr7:44746178-44745828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:135-669
               
               
               Cow position:chr7:60758513-60757961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:140-464
               
               
               Cow position:chr7:65625185-65624855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:147-478
               
               
               Cow position:chr7:61138462-61138131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:147-689
               
               
               Cow position:chr7:982900-982345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 171

               
               
               Conread position:147-689
               
               
               Cow position:chr7:33334148-33334698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:157-678
               
               
               Cow position:chr7:1382467-1382998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:354
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:166-389
               
               
               Cow position:chr7:3325983-3325754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):133, 52

               
               
               Conread position:166-448
               
               
               Cow position:chr7:41532412-41532690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 162

               
               
               Conread position:173-644
               
               
               Cow position:chr7:59092248-59092700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:178-689
               
               
               Cow position:chr7:33309530-33308994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 147

               
               
               Conread position:179-707
               
               
               Cow position:chr7:20937994-20938544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:183-689
               
               
               Cow position:chr7:45766593-45766076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 134

               
               
               Conread position:188-401
               
               
               Cow position:chr7:66225200-66224988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:207-689
               
               
               Cow position:chr7:49826337-49825841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 110

               
               
               Conread position:208-678
               
               
               Cow position:chr7:48146125-48146596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 26

               
               
               Conread position:213-691
               
               
               Cow position:chr7:50960841-50961328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 104

               
               
               Conread position:217-693
               
               
               Cow position:chr7:53069894-53070382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 100

               
               
               Conread position:219-478
               
               
               Cow position:chr7:9858168-9857909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:220-689
               
               
               Cow position:chr7:29381676-29382159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 83

               
               
               Conread position:223-632
               
               
               Cow position:chr7:44141950-44141517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):162, 77

               
               
               Conread position:225-420
               
               
               Cow position:chr7:2152984-2152786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 89

               
               
               Conread position:226-689
               
               
               Cow position:chr7:32713832-32713366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:226-689
               
               
               Cow position:chr7:38146090-38145624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):168, 105

               
               
               Conread position:229-457
               
               
               Cow position:chr7:22184966-22184731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:234-603
               
               
               Cow position:chr7:47125733-47126109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):162, 61

               
               
               Conread position:236-637
               
               
               Cow position:chr7:4879935-4880333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 66

               
               
               Conread position:240-689
               
               
               Cow position:chr7:58717913-58718368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:315
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):147, 77

               
               
               Conread position:241-689
               
               
               Cow position:chr7:62702858-62702396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 62

               
               
               Conread position:243-636
               
               
               Cow position:chr7:15548751-15549162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 313

               
               
               Conread position:244-576
               
               
               Cow position:chr7:33355350-33355697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:251-395
               
               
               Cow position:chr7:35182642-35182781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-651
               
               
               Cow position:chr7:32453297-32453724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 277

               
               
               Conread position:253-669
               
               
               Cow position:chr7:23463599-23463174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:258-678
               
               
               Cow position:chr7:24059310-24059743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 6

               
               
               Conread position:264-553
               
               
               Cow position:chr7:10099984-10099678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 265

               
               
               Conread position:269-678
               
               
               Cow position:chr7:39397685-39397269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:269-678
               
               
               Cow position:chr7:44524411-44523988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:272-693
               
               
               Cow position:chr7:31260139-31259703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:276-674
               
               
               Cow position:chr7:50053225-50052820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):111, 41

               
               
               Conread position:276-692
               
               
               Cow position:chr7:56888183-56887759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:285-693
               
               
               Cow position:chr7:47045105-47045508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:286-675
               
               
               Cow position:chr7:27576948-27576552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:288-678
               
               
               Cow position:chr7:18500145-18499755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:288-689
               
               
               Cow position:chr7:900417-900004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:304-628
               
               
               Cow position:chr7:4694561-4694894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:304-630
               
               
               Cow position:chr7:46192323-46192659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:308-689
               
               
               Cow position:chr7:23913091-23913492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:316-689
               
               
               Cow position:chr7:57161870-57161480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:316-709
               
               
               Cow position:chr7:66011450-66011850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:320-651
               
               
               Cow position:chr7:42333115-42333456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:325-626
               
               
               Cow position:chr7:35867551-35867235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):71, 250

               
               
               Conread position:325-724
               
               
               Cow position:chr7:30651598-30652008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:333-689
               
               
               Cow position:chr7:31914707-31914346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:336-677
               
               
               Cow position:chr7:2410687-2411050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:336-696
               
               
               Cow position:chr7:30173345-30172983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:337-689
               
               
               Cow position:chr7:3509546-3509891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:338-678
               
               
               Cow position:chr7:5638962-5639315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):57, 188

               
               
               Conread position:347-678
               
               
               Cow position:chr7:45953570-45953920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 218

               
               
               Conread position:364-689
               
               
               Cow position:chr7:50536372-50536037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:367-689
               
               
               Cow position:chr7:30716674-30716349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 132

               
               
               Conread position:386-689
               
               
               Cow position:chr7:37507818-37507504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:387-605
               
               
               Cow position:chr7:18894838-18894613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 183

               
               
               Conread position:387-678
               
               
               Cow position:chr7:63130488-63130786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 167

               
               
               Conread position:395-689
               
               
               Cow position:chr7:54823477-54823172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:405-707
               
               
               Cow position:chr7:40263392-40263082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 164

               
               
               Conread position:411-675
               
               
               Cow position:chr7:2152370-2152096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 162

               
               
               Conread position:427-689
               
               
               Cow position:chr7:39850413-39850145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-401
               
               
               Cow position:chr8:44240967-44240561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 326

               
               
               Conread position:1-401
               
               
               Cow position:chr8:49219668-49220074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-480
               
               
               Cow position:chr8:12070630-12071106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:1-486
               
               
               Cow position:chr8:30417357-30417840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 182

               
               
               Conread position:1-568
               
               
               Cow position:chr8:42486632-42487225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-590
               
               
               Cow position:chr8:47787470-47786892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:1-605
               
               
               Cow position:chr8:3854307-3853678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:1-658
               
               
               Cow position:chr8:24230155-24230831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 232

               
               
               Conread position:1-673
               
               
               Cow position:chr8:20675836-20675155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:1-678
               
               
               Cow position:chr8:29010375-29011068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-678
               
               
               Cow position:chr8:32927603-32926912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 343

               
               
               Conread position:1-689
               
               
               Cow position:chr8:2167793-2167091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 318

               
               
               Conread position:1-689
               
               
               Cow position:chr8:8103573-8102867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 179

               
               
               Conread position:1-689
               
               
               Cow position:chr8:8228669-8227967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:1-689
               
               
               Cow position:chr8:12451778-12452487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chr8:25413345-25414045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:1-689
               
               
               Cow position:chr8:32649427-32650120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr8:45069663-45070364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:1-689
               
               
               Cow position:chr8:47360004-47359329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:1-689
               
               
               Cow position:chr8:47659595-47658897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:1-689
               
               
               Cow position:chr8:50284494-50283784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 323

               
               
               Conread position:1-689
               
               
               Cow position:chr8:50928380-50927670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-696
               
               
               Cow position:chr8:33899199-33898478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 125

               
               
               Conread position:1-704
               
               
               Cow position:chr8:49285337-49284611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:1-707
               
               
               Cow position:chr8:27536139-27535405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:1-707
               
               
               Cow position:chr8:44109794-44110527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:1-722
               
               
               Cow position:chr8:4746567-4745833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:3-477
               
               
               Cow position:chr8:3955772-3956252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:3-477
               
               
               Cow position:chr8:30490200-30489712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-650
               
               
               Cow position:chr8:27154403-27153735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:3-656
               
               
               Cow position:chr8:26877973-26878662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 311

               
               
               Conread position:3-678
               
               
               Cow position:chr8:4272999-4273699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:3-678
               
               
               Cow position:chr8:12089376-12090035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:3-678
               
               
               Cow position:chr8:25773909-25773216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:3-688
               
               
               Cow position:chr8:10751070-10751781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 340

               
               
               Conread position:3-689
               
               
               Cow position:chr8:1151557-1150859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 288

               
               
               Conread position:3-689
               
               
               Cow position:chr8:5244683-5244008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:3-689
               
               
               Cow position:chr8:6203557-6202853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr8:8553988-8553285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr8:11835259-11835964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-689
               
               
               Cow position:chr8:15223537-15224236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr8:32629285-32628577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr8:35129069-35128361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr8:38044406-38043696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 327

               
               
               Conread position:3-689
               
               
               Cow position:chr8:42318543-42317834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr8:50431416-50430708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-690
               
               
               Cow position:chr8:9738260-9738956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:3-693
               
               
               Cow position:chr8:1467853-1468565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 321

               
               
               Conread position:3-693
               
               
               Cow position:chr8:12446681-12445960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr8:21251968-21252679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-693
               
               
               Cow position:chr8:22155339-22154638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:4-689
               
               
               Cow position:chr8:53837668-53838366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 295

               
               
               Conread position:6-731
               
               
               Cow position:chr8:30032510-30031775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:7-693
               
               
               Cow position:chr8:21153565-21152860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:8-678
               
               
               Cow position:chr8:46950413-46951102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:9-494
               
               
               Cow position:chr8:1501548-1501050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:9-676
               
               
               Cow position:chr8:47214994-47214307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:9-688
               
               
               Cow position:chr8:1346225-1345538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:9-689
               
               
               Cow position:chr8:14630496-14629793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:9-690
               
               
               Cow position:chr8:1321750-1322454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 317

               
               
               Conread position:9-693
               
               
               Cow position:chr8:51254914-51254209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:16-452
               
               
               Cow position:chr8:55341872-55342292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 34

               
               
               Conread position:17-392
               
               
               Cow position:chr8:19443730-19444093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:17-446
               
               
               Cow position:chr8:48755408-48754980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:17-665
               
               
               Cow position:chr8:46097082-46097724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:426
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:17-689
               
               
               Cow position:chr8:56508871-56508189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:17-707
               
               
               Cow position:chr8:34485368-34484658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:18-476
               
               
               Cow position:chr8:46216860-46216389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 235

               
               
               Conread position:19-468
               
               
               Cow position:chr8:38038913-38038455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 239

               
               
               Conread position:22-490
               
               
               Cow position:chr8:35542487-35542015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:22-677
               
               
               Cow position:chr8:46118555-46119192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:423
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:34-477
               
               
               Cow position:chr8:6750264-6749820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 292

               
               
               Conread position:42-664
               
               
               Cow position:chr8:42872054-42872679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:45-478
               
               
               Cow position:chr8:38275160-38275592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:45-689
               
               
               Cow position:chr8:29274074-29273443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 48

               
               
               Conread position:45-704
               
               
               Cow position:chr8:36633647-36632985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 123

               
               
               Conread position:54-387
               
               
               Cow position:chr8:19193297-19193619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:54-641
               
               
               Cow position:chr8:24192040-24192647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:60-690
               
               
               Cow position:chr8:31569995-31569357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:62-689
               
               
               Cow position:chr8:40550501-40549850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 140

               
               
               Conread position:62-689
               
               
               Cow position:chr8:55302692-55303344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 151

               
               
               Conread position:68-465
               
               
               Cow position:chr8:8318237-8318638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:68-678
               
               
               Cow position:chr8:32523435-32524048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:417
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):71, 179

               
               
               Conread position:69-689
               
               
               Cow position:chr8:15865508-15864873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 253

               
               
               Conread position:70-689
               
               
               Cow position:chr8:31221893-31222523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:70-689
               
               
               Cow position:chr8:41660009-41659376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:73-468
               
               
               Cow position:chr8:43018834-43018438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):70, 161

               
               
               Conread position:74-688
               
               
               Cow position:chr8:44955-45587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 245

               
               
               Conread position:79-696
               
               
               Cow position:chr8:1582304-1582915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:93-678
               
               
               Cow position:chr8:13558096-13558691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:94-689
               
               
               Cow position:chr8:21118948-21118340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:95-454
               
               
               Cow position:chr8:52212386-52212746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 133

               
               
               Conread position:95-674
               
               
               Cow position:chr8:38562614-38562024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 223

               
               
               Conread position:95-689
               
               
               Cow position:chr8:2888476-2889086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 227

               
               
               Conread position:96-488
               
               
               Cow position:chr8:38016571-38016171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 222

               
               
               Conread position:96-659
               
               
               Cow position:chr8:8009212-8009791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 226

               
               
               Conread position:97-665
               
               
               Cow position:chr8:27720719-27721270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:369
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):373, 38

               
               
               Conread position:100-451
               
               
               Cow position:chr8:7451315-7451660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:102-402
               
               
               Cow position:chr8:6062664-6062371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 149

               
               
               Conread position:119-672
               
               
               Cow position:chr8:217452-216895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 200

               
               
               Conread position:120-689
               
               
               Cow position:chr8:22532375-22531792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:120-693
               
               
               Cow position:chr8:25671149-25671731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 197

               
               
               Conread position:123-704
               
               
               Cow position:chr8:12540198-12539608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:390
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:124-678
               
               
               Cow position:chr8:53005024-53004470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:124-689
               
               
               Cow position:chr8:37933167-37933747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 195

               
               
               Conread position:129-390
               
               
               Cow position:chr8:9057159-9056901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:130-689
               
               
               Cow position:chr8:39049449-39048890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:135-678
               
               
               Cow position:chr8:47667699-47667137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:135-692
               
               
               Cow position:chr8:46058896-46058329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:141-627
               
               
               Cow position:chr8:24873392-24872907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:337
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:148-477
               
               
               Cow position:chr8:6748882-6748548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:148-650
               
               
               Cow position:chr8:31885100-31885590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:148-688
               
               
               Cow position:chr8:50683477-50682923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:148-696
               
               
               Cow position:chr8:4901780-4902344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:152-477
               
               
               Cow position:chr8:12248141-12248472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 166

               
               
               Conread position:157-709
               
               
               Cow position:chr8:32798257-32797720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:364
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:160-688
               
               
               Cow position:chr8:12056451-12056999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:363
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):237, 16

               
               
               Conread position:163-651
               
               
               Cow position:chr8:13736445-13736944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 154

               
               
               Conread position:164-395
               
               
               Cow position:chr8:20687102-20687329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):184, 7

               
               
               Conread position:165-387
               
               
               Cow position:chr8:26392644-26392421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):165, 37

               
               
               Conread position:166-678
               
               
               Cow position:chr8:41642325-41641812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 102

               
               
               Conread position:166-689
               
               
               Cow position:chr8:13832039-13831501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 151

               
               
               Conread position:167-707
               
               
               Cow position:chr8:8225434-8224905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 29

               
               
               Conread position:168-678
               
               
               Cow position:chr8:41950088-41950606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 149

               
               
               Conread position:171-539
               
               
               Cow position:chr8:46593069-46593446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 51

               
               
               Conread position:178-477
               
               
               Cow position:chr8:21207627-21207929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):220, 139

               
               
               Conread position:180-395
               
               
               Cow position:chr8:4197916-4198136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:181-675
               
               
               Cow position:chr8:29037842-29038344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:183-673
               
               
               Cow position:chr8:12662252-12661758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 135

               
               
               Conread position:188-476
               
               
               Cow position:chr8:40107848-40108145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:189-620
               
               
               Cow position:chr8:22960603-22960156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 114

               
               
               Conread position:191-568
               
               
               Cow position:chr8:7250773-7251167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):203, 126

               
               
               Conread position:191-689
               
               
               Cow position:chr8:4728705-4728195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 126

               
               
               Conread position:194-601
               
               
               Cow position:chr8:7051355-7051779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):174, 123

               
               
               Conread position:204-722
               
               
               Cow position:chr8:60266322-60266858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 128

               
               
               Conread position:205-678
               
               
               Cow position:chr8:41741590-41742066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 49

               
               
               Conread position:206-692
               
               
               Cow position:chr8:13373069-13373556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 111

               
               
               Conread position:212-693
               
               
               Cow position:chr8:31977463-31976968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 75

               
               
               Conread position:220-683
               
               
               Cow position:chr8:19823612-19823142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 96

               
               
               Conread position:223-451
               
               
               Cow position:chr8:27819983-27820216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:223-678
               
               
               Cow position:chr8:45171803-45171358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:223-707
               
               
               Cow position:chr8:19360560-19361046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 11

               
               
               Conread position:224-689
               
               
               Cow position:chr8:26868980-26869457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 93

               
               
               Conread position:224-689
               
               
               Cow position:chr8:39740727-39740256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 93

               
               
               Conread position:229-689
               
               
               Cow position:chr8:26496467-26496936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:231-689
               
               
               Cow position:chr8:12669807-12669346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:233-674
               
               
               Cow position:chr8:61099503-61099051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:234-494
               
               
               Cow position:chr8:23689546-23689808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 83

               
               
               Conread position:234-623
               
               
               Cow position:chr8:20851388-20851778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:242-669
               
               
               Cow position:chr8:10364582-10364162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):165, 75

               
               
               Conread position:251-678
               
               
               Cow position:chr8:35212619-35212176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:251-704
               
               
               Cow position:chr8:93430-93890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:309
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:254-691
               
               
               Cow position:chr8:46960993-46961443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 21

               
               
               Conread position:256-693
               
               
               Cow position:chr8:12286922-12287374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):148, 61

               
               
               Conread position:257-678
               
               
               Cow position:chr8:27562161-27561731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:258-693
               
               
               Cow position:chr8:47591007-47590580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:294
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:264-689
               
               
               Cow position:chr8:12078814-12078375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:269-689
               
               
               Cow position:chr8:60064102-60064534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:283-689
               
               
               Cow position:chr8:21218751-21219158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 34

               
               
               Conread position:286-673
               
               
               Cow position:chr8:24903871-24904268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:304-720
               
               
               Cow position:chr8:56481733-56481299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 246

               
               
               Conread position:308-689
               
               
               Cow position:chr8:8903328-8902955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:314-662
               
               
               Cow position:chr8:30888783-30889127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:317-659
               
               
               Cow position:chr8:1116217-1115861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:326-693
               
               
               Cow position:chr8:14580828-14580444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 214

               
               
               Conread position:333-644
               
               
               Cow position:chr8:18631399-18631091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:333-669
               
               
               Cow position:chr8:24869138-24868795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:333-689
               
               
               Cow position:chr8:19893079-19893451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 199

               
               
               Conread position:333-689
               
               
               Cow position:chr8:36855603-36855236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):59, 242

               
               
               Conread position:334-696
               
               
               Cow position:chr8:16940909-16940528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 200

               
               
               Conread position:335-575
               
               
               Cow position:chr8:17993333-17993092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:343-641
               
               
               Cow position:chr8:39775197-39774879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 190

               
               
               Conread position:347-681
               
               
               Cow position:chr8:42153082-42152733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):27, 194

               
               
               Conread position:350-707
               
               
               Cow position:chr8:38295356-38294985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:363-689
               
               
               Cow position:chr8:40584159-40584502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 170

               
               
               Conread position:368-689
               
               
               Cow position:chr8:26624509-26624847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 217

               
               
               Conread position:368-689
               
               
               Cow position:chr8:55445315-55444977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 221

               
               
               Conread position:386-681
               
               
               Cow position:chr8:22377069-22376760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 197

               
               
               Conread position:386-689
               
               
               Cow position:chr8:27943050-27942736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:386-693
               
               
               Cow position:chr8:51020039-51019720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):24, 197

               
               
               Conread position:389-689
               
               
               Cow position:chr8:16194243-16194552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:398-715
               
               
               Cow position:chr8:38016177-38015856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 51

               
               
               Conread position:400-686
               
               
               Cow position:chr8:26878677-26878969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):77, 181

               
               
               Conread position:402-689
               
               
               Cow position:chr8:18657593-18657300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):5, 176

               
               
               Conread position:403-723
               
               
               Cow position:chr8:6377739-6377402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 155

               
               
               Conread position:484-675
               
               
               Cow position:chr8:1159139-1158949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:1-401
               
               
               Cow position:chr9:22320327-22319923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:1-401
               
               
               Cow position:chr9:59538520-59538924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 217

               
               
               Conread position:1-455
               
               
               Cow position:chr9:10110031-10110478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:1-477
               
               
               Cow position:chr9:7005095-7005585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:1-677
               
               
               Cow position:chr9:50063546-50062860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:446
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:1-678
               
               
               Cow position:chr9:791935-791234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:1-678
               
               
               Cow position:chr9:4648249-4647563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:1-678
               
               
               Cow position:chr9:19156904-19156214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:1-689
               
               
               Cow position:chr9:6765395-6764685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 312

               
               
               Conread position:1-696
               
               
               Cow position:chr9:3805970-3806690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 197

               
               
               Conread position:1-696
               
               
               Cow position:chr9:10939100-10939818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 229

               
               
               Conread position:1-696
               
               
               Cow position:chr9:49754996-49754320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:1-716
               
               
               Cow position:chr9:62734769-62734052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 178

               
               
               Conread position:2-478
               
               
               Cow position:chr9:16516140-16516622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:2-689
               
               
               Cow position:chr9:5006354-5007060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:2-693
               
               
               Cow position:chr9:63670849-63671562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:464
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:3-402
               
               
               Cow position:chr9:26569646-26570045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:3-455
               
               
               Cow position:chr9:3310997-3311463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 338

               
               
               Conread position:3-455
               
               
               Cow position:chr9:56745605-56745150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:3-477
               
               
               Cow position:chr9:14344929-14344452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 190

               
               
               Conread position:3-539
               
               
               Cow position:chr9:999843-1000405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-559
               
               
               Cow position:chr9:35544150-35543568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-678
               
               
               Cow position:chr9:17301748-17301049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:3-686
               
               
               Cow position:chr9:1098972-1099678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr9:2872860-2873561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr9:3060966-3061674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:3-689
               
               
               Cow position:chr9:9015453-9016161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:3-689
               
               
               Cow position:chr9:14002422-14003124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr9:31418125-31417429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:3-689
               
               
               Cow position:chr9:44167972-44168676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chr9:44203690-44202993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 142

               
               
               Conread position:3-689
               
               
               Cow position:chr9:45875898-45876605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chr9:46668414-46667711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-689
               
               
               Cow position:chr9:52525536-52526238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-689
               
               
               Cow position:chr9:64012842-64012142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:3-693
               
               
               Cow position:chr9:1249615-1248905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chr9:48795914-48795200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-693
               
               
               Cow position:chr9:56176153-56176862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-703
               
               
               Cow position:chr9:26277036-26277748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-704
               
               
               Cow position:chr9:15053504-15052774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 309

               
               
               Conread position:3-707
               
               
               Cow position:chr9:49117130-49117850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:9-477
               
               
               Cow position:chr9:1741467-1741000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:9-692
               
               
               Cow position:chr9:59508778-59508090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:9-716
               
               
               Cow position:chr9:24723168-24723867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:13-477
               
               
               Cow position:chr9:866769-866298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 189

               
               
               Conread position:17-450
               
               
               Cow position:chr9:9560863-9560427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:17-650
               
               
               Cow position:chr9:26081927-26081271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:18-694
               
               
               Cow position:chr9:4306670-4305984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:18-704
               
               
               Cow position:chr9:128456-127750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 292

               
               
               Conread position:18-707
               
               
               Cow position:chr9:37067253-37067953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 42

               
               
               Conread position:18-711
               
               
               Cow position:chr9:37015605-37014933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:463
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:20-678
               
               
               Cow position:chr9:53530130-53530794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:21-654
               
               
               Cow position:chr9:43644242-43643599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:42-678
               
               
               Cow position:chr9:26280273-26280920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:45-694
               
               
               Cow position:chr9:11440251-11439585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:54-477
               
               
               Cow position:chr9:10644204-10643772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 6

               
               
               Conread position:54-674
               
               
               Cow position:chr9:8404854-8405487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:54-698
               
               
               Cow position:chr9:54995078-54995736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:54-716
               
               
               Cow position:chr9:34946587-34945904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:59-457
               
               
               Cow position:chr9:29372056-29372457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:59-693
               
               
               Cow position:chr9:17017187-17017846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 263

               
               
               Conread position:60-614
               
               
               Cow position:chr9:35288731-35288179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:350
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):182, 77

               
               
               Conread position:67-678
               
               
               Cow position:chr9:30140141-30139530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 159

               
               
               Conread position:68-678
               
               
               Cow position:chr9:29788213-29787599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:68-679
               
               
               Cow position:chr9:1515743-1516362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:74-478
               
               
               Cow position:chr9:2222652-2222262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):315, 47

               
               
               Conread position:82-607
               
               
               Cow position:chr9:11157885-11157357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:86-460
               
               
               Cow position:chr9:23404905-23405284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:87-622
               
               
               Cow position:chr9:2029030-2028484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 148

               
               
               Conread position:88-696
               
               
               Cow position:chr9:7535935-7536531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:93-534
               
               
               Cow position:chr9:11544171-11544635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:98-689
               
               
               Cow position:chr9:46626790-46627398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 224

               
               
               Conread position:100-452
               
               
               Cow position:chr9:8462721-8462361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:100-692
               
               
               Cow position:chr9:23421069-23421675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 222

               
               
               Conread position:101-665
               
               
               Cow position:chr9:62794704-62794137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:373
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:102-717
               
               
               Cow position:chr9:51591112-51591743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:108-711
               
               
               Cow position:chr9:36504142-36503567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 9

               
               
               Conread position:120-689
               
               
               Cow position:chr9:5453137-5452553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 184

               
               
               Conread position:120-689
               
               
               Cow position:chr9:54459997-54459415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:124-401
               
               
               Cow position:chr9:51179394-51179119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 194

               
               
               Conread position:124-605
               
               
               Cow position:chr9:1309220-1309705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:335
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):270, 31

               
               
               Conread position:124-678
               
               
               Cow position:chr9:13473052-13472485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 195

               
               
               Conread position:124-689
               
               
               Cow position:chr9:47044455-47045034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:125-709
               
               
               Cow position:chr9:34676861-34676290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:135-677
               
               
               Cow position:chr9:16012382-16011847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:147-689
               
               
               Cow position:chr9:1843216-1843752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:349
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):205, 8

               
               
               Conread position:148-476
               
               
               Cow position:chr9:18570002-18569677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):17, 159

               
               
               Conread position:148-661
               
               
               Cow position:chr9:41507315-41506785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 156

               
               
               Conread position:149-450
               
               
               Cow position:chr9:5526086-5525780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:149-689
               
               
               Cow position:chr9:50839965-50840519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 169

               
               
               Conread position:150-478
               
               
               Cow position:chr9:2202674-2202332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):145, 31

               
               
               Conread position:152-689
               
               
               Cow position:chr9:3438108-3438654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:155-715
               
               
               Cow position:chr9:2173076-2173650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 140

               
               
               Conread position:165-693
               
               
               Cow position:chr9:35022547-35023056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 86

               
               
               Conread position:166-689
               
               
               Cow position:chr9:6549727-6550264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 137

               
               
               Conread position:166-689
               
               
               Cow position:chr9:47170596-47171140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 148

               
               
               Conread position:168-689
               
               
               Cow position:chr9:13312118-13312650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 85

               
               
               Conread position:168-704
               
               
               Cow position:chr9:21461036-21461581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:169-489
               
               
               Cow position:chr9:14766612-14766936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 152

               
               
               Conread position:176-627
               
               
               Cow position:chr9:9094069-9094534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 352

               
               
               Conread position:176-678
               
               
               Cow position:chr9:34695806-34696332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:188-665
               
               
               Cow position:chr9:3576698-3576203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:340
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 84

               
               
               Conread position:189-654
               
               
               Cow position:chr9:43493517-43493998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 114

               
               
               Conread position:189-689
               
               
               Cow position:chr9:43495707-43496221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 114

               
               
               Conread position:190-689
               
               
               Cow position:chr9:3998187-3997673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 129

               
               
               Conread position:204-675
               
               
               Cow position:chr9:62444385-62443900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 40

               
               
               Conread position:210-689
               
               
               Cow position:chr9:36845328-36844842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):179, 120

               
               
               Conread position:212-678
               
               
               Cow position:chr9:49283440-49283917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):177, 105

               
               
               Conread position:212-693
               
               
               Cow position:chr9:7104635-7104139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 105

               
               
               Conread position:221-392
               
               
               Cow position:chr9:23298656-23298486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:229-590
               
               
               Cow position:chr9:53641933-53641557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:231-689
               
               
               Cow position:chr9:1998680-1998209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 73

               
               
               Conread position:236-687
               
               
               Cow position:chr9:53573624-53574065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):20, 100

               
               
               Conread position:237-678
               
               
               Cow position:chr9:56166791-56166345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:311
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:242-564
               
               
               Cow position:chr9:28702047-28702383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:242-663
               
               
               Cow position:chr9:31093288-31092856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:243-678
               
               
               Cow position:chr9:49456951-49457406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:247-678
               
               
               Cow position:chr9:11851233-11850787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):147, 175

               
               
               Conread position:253-732
               
               
               Cow position:chr9:27004133-27004615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 67

               
               
               Conread position:269-603
               
               
               Cow position:chr9:25453197-25452846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 200

               
               
               Conread position:269-689
               
               
               Cow position:chr9:2856497-2856931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:272-635
               
               
               Cow position:chr9:12250646-12251025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:279-689
               
               
               Cow position:chr9:39812978-39813402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:281-648
               
               
               Cow position:chr9:28774574-28774194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:283-669
               
               
               Cow position:chr9:20505787-20506178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:291-659
               
               
               Cow position:chr9:8655639-8655258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:310-714
               
               
               Cow position:chr9:47814018-47814439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:316-641
               
               
               Cow position:chr9:3052280-3051940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:317-693
               
               
               Cow position:chr9:52401655-52402051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:278
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 218

               
               
               Conread position:324-663
               
               
               Cow position:chr9:58912302-58911947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 151

               
               
               Conread position:333-709
               
               
               Cow position:chr9:9679770-9679400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:337-675
               
               
               Cow position:chr9:45153559-45153913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:346-689
               
               
               Cow position:chr9:6252296-6252655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:346-689
               
               
               Cow position:chr9:37174678-37174318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 243

               
               
               Conread position:348-689
               
               
               Cow position:chr9:10325674-10326031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:350-673
               
               
               Cow position:chr9:15835953-15835612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:362-612
               
               
               Cow position:chr9:43845369-43845639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:362-693
               
               
               Cow position:chr9:39303810-39303461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 218

               
               
               Conread position:368-640
               
               
               Cow position:chr9:13529976-13529693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 204

               
               
               Conread position:368-689
               
               
               Cow position:chr9:28785091-28785431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 223

               
               
               Conread position:385-707
               
               
               Cow position:chr9:32985178-32985496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:387-633
               
               
               Cow position:chr9:18007399-18007663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:409-680
               
               
               Cow position:chr9:62669752-62669475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 168

               
               
               Conread position:416-707
               
               
               Cow position:chr9:23836239-23836529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 156

               
               
               Conread position:1-394
               
               
               Cow position:chrX:45417314-45416918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:1-396
               
               
               Cow position:chrX:35887377-35887779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:1-477
               
               
               Cow position:chrX:22126489-22126011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:1-605
               
               
               Cow position:chrX:16406865-16407465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:402
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:1-621
               
               
               Cow position:chrX:38149884-38150526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 325

               
               
               Conread position:1-624
               
               
               Cow position:chrX:30112419-30113035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:1-663
               
               
               Cow position:chrX:4766995-4767670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 53

               
               
               Conread position:1-663
               
               
               Cow position:chrX:22810180-22810866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-669
               
               
               Cow position:chrX:11743576-11744247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:1-669
               
               
               Cow position:chrX:17611158-17610474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:1-669
               
               
               Cow position:chrX:20870929-20870243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:1-670
               
               
               Cow position:chrX:39564998-39564308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:1-675
               
               
               Cow position:chrX:12464293-12464991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 234

               
               
               Conread position:1-678
               
               
               Cow position:chrX:21317751-21318438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 138

               
               
               Conread position:1-678
               
               
               Cow position:chrX:27317515-27318217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-680
               
               
               Cow position:chrX:5279043-5278352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 206

               
               
               Conread position:1-685
               
               
               Cow position:chrX:21591574-21592286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 327

               
               
               Conread position:1-688
               
               
               Cow position:chrX:18951446-18950742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 325

               
               
               Conread position:1-689
               
               
               Cow position:chrX:5640591-5639887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 197

               
               
               Conread position:1-689
               
               
               Cow position:chrX:16231553-16230879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:1-689
               
               
               Cow position:chrX:17053856-17054563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:1-689
               
               
               Cow position:chrX:21581727-21582438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:1-689
               
               
               Cow position:chrX:23279312-23280022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 324

               
               
               Conread position:1-689
               
               
               Cow position:chrX:28606796-28606091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:1-689
               
               
               Cow position:chrX:29098712-29099414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:1-690
               
               
               Cow position:chrX:387423-388129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 236

               
               
               Conread position:1-690
               
               
               Cow position:chrX:21646990-21646283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:1-693
               
               
               Cow position:chrX:26756355-26755639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 322

               
               
               Conread position:1-696
               
               
               Cow position:chrX:4906706-4905985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 170

               
               
               Conread position:1-696
               
               
               Cow position:chrX:30054183-30053466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:1-707
               
               
               Cow position:chrX:13888187-13888901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:1-709
               
               
               Cow position:chrX:18899529-18898824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:1-772
               
               
               Cow position:chrX:164209-164990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:2-676
               
               
               Cow position:chrX:16068075-16067390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:2-689
               
               
               Cow position:chrX:15378345-15377668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:2-689
               
               
               Cow position:chrX:22818362-22819073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 322

               
               
               Conread position:3-402
               
               
               Cow position:chrX:13243945-13244350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-457
               
               
               Cow position:chrX:16539764-16540222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:3-464
               
               
               Cow position:chrX:21413885-21414356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:3-477
               
               
               Cow position:chrX:5281492-5281010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-542
               
               
               Cow position:chrX:37814437-37815003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-568
               
               
               Cow position:chrX:12345225-12345819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-568
               
               
               Cow position:chrX:30167788-30167203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 225

               
               
               Conread position:3-570
               
               
               Cow position:chrX:22331486-22330899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 329

               
               
               Conread position:3-610
               
               
               Cow position:chrX:2486943-2487559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-641
               
               
               Cow position:chrX:3466071-3465411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-642
               
               
               Cow position:chrX:3418931-3418266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 324

               
               
               Conread position:3-663
               
               
               Cow position:chrX:28667643-28666982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 185

               
               
               Conread position:3-678
               
               
               Cow position:chrX:16710253-16710942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:3-678
               
               
               Cow position:chrX:18221706-18222399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-678
               
               
               Cow position:chrX:29095028-29094332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-681
               
               
               Cow position:chrX:30181638-30180935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:672701-671998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chrX:2560658-2559965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:3-689
               
               
               Cow position:chrX:2578713-2579414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-689
               
               
               Cow position:chrX:5865428-5866141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 326

               
               
               Conread position:3-689
               
               
               Cow position:chrX:6580231-6580930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:3-689
               
               
               Cow position:chrX:7754193-7754901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:10529500-10528789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 325

               
               
               Conread position:3-689
               
               
               Cow position:chrX:11458523-11457819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:3-689
               
               
               Cow position:chrX:12308476-12307767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:13072159-13071450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:13092719-13092010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:15261330-15260620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 324

               
               
               Conread position:3-689
               
               
               Cow position:chrX:15978665-15977958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-689
               
               
               Cow position:chrX:16045259-16045968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:3-689
               
               
               Cow position:chrX:18657514-18656810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-689
               
               
               Cow position:chrX:19398063-19398773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 324

               
               
               Conread position:3-689
               
               
               Cow position:chrX:20357713-20357004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:21792865-21793585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 321

               
               
               Conread position:3-689
               
               
               Cow position:chrX:22565398-22564688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:24770568-24769861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:3-689
               
               
               Cow position:chrX:29171494-29170786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 309

               
               
               Conread position:3-689
               
               
               Cow position:chrX:30164942-30164241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 275

               
               
               Conread position:3-689
               
               
               Cow position:chrX:31495023-31495732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 296

               
               
               Conread position:3-689
               
               
               Cow position:chrX:32064875-32064172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 50

               
               
               Conread position:3-689
               
               
               Cow position:chrX:35532147-35532850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:3-689
               
               
               Cow position:chrX:36536443-36535734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 323

               
               
               Conread position:3-689
               
               
               Cow position:chrX:39712840-39713546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 308

               
               
               Conread position:3-692
               
               
               Cow position:chrX:16781573-16782279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:3-693
               
               
               Cow position:chrX:2814190-2813483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:3-693
               
               
               Cow position:chrX:3082846-3082134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:3-693
               
               
               Cow position:chrX:13929443-13928742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:3-693
               
               
               Cow position:chrX:14783058-14782345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:3-693
               
               
               Cow position:chrX:19474861-19474148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 322

               
               
               Conread position:3-693
               
               
               Cow position:chrX:24468833-24468123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 320

               
               
               Conread position:3-693
               
               
               Cow position:chrX:28587268-28587972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-696
               
               
               Cow position:chrX:5360296-5361012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:3-696
               
               
               Cow position:chrX:14597143-14597848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 323

               
               
               Conread position:3-696
               
               
               Cow position:chrX:43437617-43436897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 323

               
               
               Conread position:4-584
               
               
               Cow position:chrX:9086002-9086605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 238

               
               
               Conread position:8-392
               
               
               Cow position:chrX:19621654-19622049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:9-387
               
               
               Cow position:chrX:18919935-18920320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:9-626
               
               
               Cow position:chrX:42008923-42009528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 317

               
               
               Conread position:9-675
               
               
               Cow position:chrX:4327392-4326697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:9-689
               
               
               Cow position:chrX:21342700-21343390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:9-689
               
               
               Cow position:chrX:27984059-27983356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:9-689
               
               
               Cow position:chrX:31979540-31978845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 225

               
               
               Conread position:9-693
               
               
               Cow position:chrX:5333135-5332431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:10-693
               
               
               Cow position:chrX:14461612-14462320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 248

               
               
               Conread position:12-678
               
               
               Cow position:chrX:17488324-17487640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 39

               
               
               Conread position:13-441
               
               
               Cow position:chrX:24171284-24170858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:17-480
               
               
               Cow position:chrX:15569611-15569132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:17-631
               
               
               Cow position:chrX:2606744-2607357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:410
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:17-687
               
               
               Cow position:chrX:2879421-2878750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:17-690
               
               
               Cow position:chrX:302405-303113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:18-474
               
               
               Cow position:chrX:2145275-2145732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:18-675
               
               
               Cow position:chrX:28556684-28557349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:18-689
               
               
               Cow position:chrX:37851447-37852133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 253

               
               
               Conread position:18-698
               
               
               Cow position:chrX:19877118-19877848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:475
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:21-605
               
               
               Cow position:chrX:20366865-20366262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 259

               
               
               Conread position:24-675
               
               
               Cow position:chrX:34008093-34008758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 302

               
               
               Conread position:25-693
               
               
               Cow position:chrX:26274454-26275139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 301

               
               
               Conread position:37-457
               
               
               Cow position:chrX:30540145-30539724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:40-471
               
               
               Cow position:chrX:37820475-37820904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 135

               
               
               Conread position:45-418
               
               
               Cow position:chrX:20512228-20511860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:45-669
               
               
               Cow position:chrX:20588996-20589629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 213

               
               
               Conread position:45-677
               
               
               Cow position:chrX:39764910-39765543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:45-678
               
               
               Cow position:chrX:18289741-18289099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 49

               
               
               Conread position:45-689
               
               
               Cow position:chrX:26231427-26230763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 278

               
               
               Conread position:45-689
               
               
               Cow position:chrX:29917010-29916351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 276

               
               
               Conread position:47-709
               
               
               Cow position:chrX:24463100-24462419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 167

               
               
               Conread position:51-478
               
               
               Cow position:chrX:17260528-17260092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 221

               
               
               Conread position:54-482
               
               
               Cow position:chrX:2592644-2592232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:54-689
               
               
               Cow position:chrX:12144441-12145094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:57-677
               
               
               Cow position:chrX:23928769-23928168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:58-475
               
               
               Cow position:chrX:26749920-26749496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:59-396
               
               
               Cow position:chrX:12178649-12178308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:59-478
               
               
               Cow position:chrX:35027663-35028078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 130

               
               
               Conread position:60-396
               
               
               Cow position:chrX:21643051-21642717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:60-586
               
               
               Cow position:chrX:12312650-12312107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 147

               
               
               Conread position:60-681
               
               
               Cow position:chrX:24807205-24806589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 163

               
               
               Conread position:60-696
               
               
               Cow position:chrX:33829392-33830045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 240

               
               
               Conread position:60-699
               
               
               Cow position:chrX:33536946-33537589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 263

               
               
               Conread position:60-716
               
               
               Cow position:chrX:13667587-13666948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:61-457
               
               
               Cow position:chrX:24204344-24204740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:61-696
               
               
               Cow position:chrX:22611758-22612405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 261

               
               
               Conread position:62-473
               
               
               Cow position:chrX:46428351-46427921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 120

               
               
               Conread position:69-689
               
               
               Cow position:chrX:5298884-5298245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 253

               
               
               Conread position:70-478
               
               
               Cow position:chrX:26433751-26434156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):314, 30

               
               
               Conread position:71-452
               
               
               Cow position:chrX:1013447-1013832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:73-401
               
               
               Cow position:chrX:15142794-15142470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:77-606
               
               
               Cow position:chrX:34142012-34141501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:331
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:77-689
               
               
               Cow position:chrX:11977081-11976450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:81-689
               
               
               Cow position:chrX:12997541-12996915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 155

               
               
               Conread position:84-678
               
               
               Cow position:chrX:30316562-30317152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:85-651
               
               
               Cow position:chrX:25016794-25016226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:93-464
               
               
               Cow position:chrX:34006841-34006478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:95-689
               
               
               Cow position:chrX:16278039-16278651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 229

               
               
               Conread position:95-710
               
               
               Cow position:chrX:23315398-23314790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:97-395
               
               
               Cow position:chrX:24996217-24995921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 206

               
               
               Conread position:103-673
               
               
               Cow position:chrX:24110209-24109621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:120-401
               
               
               Cow position:chrX:27615085-27615363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 197

               
               
               Conread position:120-679
               
               
               Cow position:chrX:16036097-16035521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 199

               
               
               Conread position:120-689
               
               
               Cow position:chrX:16804454-16803872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:120-689
               
               
               Cow position:chrX:16809401-16808819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 198

               
               
               Conread position:121-689
               
               
               Cow position:chrX:28519300-28518725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 197

               
               
               Conread position:124-633
               
               
               Cow position:chrX:43074328-43074820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:127-672
               
               
               Cow position:chrX:11074729-11074182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 192

               
               
               Conread position:135-689
               
               
               Cow position:chrX:5426516-5427086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:135-689
               
               
               Cow position:chrX:27595800-27595231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:135-689
               
               
               Cow position:chrX:31201270-31201836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 31

               
               
               Conread position:136-689
               
               
               Cow position:chrX:40694271-40693737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:136-694
               
               
               Cow position:chrX:13281894-13282470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 181

               
               
               Conread position:137-693
               
               
               Cow position:chrX:22492465-22493034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:139-376
               
               
               Cow position:chrX:13801247-13801021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:139-650
               
               
               Cow position:chrX:22837414-22837940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 25

               
               
               Conread position:148-693
               
               
               Cow position:chrX:39561220-39560659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:149-681
               
               
               Cow position:chrX:26507697-26508222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:151-601
               
               
               Cow position:chrX:19920637-19920181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):243, 27

               
               
               Conread position:152-689
               
               
               Cow position:chrX:25450778-25451331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 186

               
               
               Conread position:156-566
               
               
               Cow position:chrX:17986332-17985918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:157-689
               
               
               Cow position:chrX:16360554-16360012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 161

               
               
               Conread position:161-678
               
               
               Cow position:chrX:41848082-41847542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:164-478
               
               
               Cow position:chrX:509631-509321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):234, 74

               
               
               Conread position:166-477
               
               
               Cow position:chrX:3144270-3144575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):230, 68

               
               
               Conread position:166-624
               
               
               Cow position:chrX:22964081-22963595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):63, 154

               
               
               Conread position:166-689
               
               
               Cow position:chrX:4623495-4622958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 137

               
               
               Conread position:166-689
               
               
               Cow position:chrX:21832352-21832881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 11

               
               
               Conread position:166-693
               
               
               Cow position:chrX:5354842-5354300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 151

               
               
               Conread position:171-397
               
               
               Cow position:chrX:13179391-13179168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:174-477
               
               
               Cow position:chrX:18243884-18243577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):224, 18

               
               
               Conread position:178-689
               
               
               Cow position:chrX:7484277-7484802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 139

               
               
               Conread position:178-689
               
               
               Cow position:chrX:8640258-8640783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 139

               
               
               Conread position:186-692
               
               
               Cow position:chrX:24175468-24174952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 150

               
               
               Conread position:188-664
               
               
               Cow position:chrX:18460618-18460140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):201, 59

               
               
               Conread position:189-623
               
               
               Cow position:chrX:8452988-8453404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):223, 60

               
               
               Conread position:203-689
               
               
               Cow position:chrX:40828600-40828111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:320
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):201, 76

               
               
               Conread position:204-681
               
               
               Cow position:chrX:43790315-43789829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:204-689
               
               
               Cow position:chrX:3373355-3372857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 113

               
               
               Conread position:207-494
               
               
               Cow position:chrX:5304527-5304241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):187, 31

               
               
               Conread position:224-567
               
               
               Cow position:chrX:34552908-34553269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:224-689
               
               
               Cow position:chrX:4342268-4342746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 93

               
               
               Conread position:224-689
               
               
               Cow position:chrX:17782021-17782495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:224-689
               
               
               Cow position:chrX:22077823-22077345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 20

               
               
               Conread position:225-693
               
               
               Cow position:chrX:21892026-21892508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 92

               
               
               Conread position:237-689
               
               
               Cow position:chrX:18462879-18463346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 80

               
               
               Conread position:240-478
               
               
               Cow position:chrX:1528537-1528294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):149, 91

               
               
               Conread position:248-665
               
               
               Cow position:chrX:6657722-6658159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):146, 51

               
               
               Conread position:250-677
               
               
               Cow position:chrX:13654042-13654479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 49

               
               
               Conread position:251-689
               
               
               Cow position:chrX:26530518-26530968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 66

               
               
               Conread position:251-689
               
               
               Cow position:chrX:41880578-41880128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 66

               
               
               Conread position:251-714
               
               
               Cow position:chrX:23335204-23334712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:327
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:254-689
               
               
               Cow position:chrX:24734216-24734659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 63

               
               
               Conread position:256-452
               
               
               Cow position:chrX:23849276-23849470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:256-510
               
               
               Cow position:chrX:44365869-44366130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 57

               
               
               Conread position:256-689
               
               
               Cow position:chrX:17523679-17523233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):138, 57

               
               
               Conread position:262-699
               
               
               Cow position:chrX:35287002-35287430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 11

               
               
               Conread position:264-693
               
               
               Cow position:chrX:29225034-29225478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:270-391
               
               
               Cow position:chrX:22141369-22141251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:281-681
               
               
               Cow position:chrX:38588337-38587925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:283-689
               
               
               Cow position:chrX:34094281-34094701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:284-689
               
               
               Cow position:chrX:9170029-9169610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:286-689
               
               
               Cow position:chrX:39547981-39548394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:288-675
               
               
               Cow position:chrX:20800369-20800772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:288-689
               
               
               Cow position:chrX:45112387-45112796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:291-693
               
               
               Cow position:chrX:11409751-11409334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:306-553
               
               
               Cow position:chrX:33966389-33966141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:307-557
               
               
               Cow position:chrX:4063658-4063402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:307-605
               
               
               Cow position:chrX:4481297-4481612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:307-605
               
               
               Cow position:chrX:19541746-19541433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:307-678
               
               
               Cow position:chrX:25052316-25051936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 129

               
               
               Conread position:307-707
               
               
               Cow position:chrX:29880681-29880261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:311-689
               
               
               Cow position:chrX:21658149-21658544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:311-689
               
               
               Cow position:chrX:23269583-23269191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:313-604
               
               
               Cow position:chrX:46295972-46296278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:319-467
               
               
               Cow position:chrX:29859809-29859660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:320-678
               
               
               Cow position:chrX:5070951-5070585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 181

               
               
               Conread position:322-689
               
               
               Cow position:chrX:41155925-41156307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:333-647
               
               
               Cow position:chrX:24928417-24928751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-675
               
               
               Cow position:chrX:22579754-22579404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 194

               
               
               Conread position:333-681
               
               
               Cow position:chrX:29028319-29028681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:333-689
               
               
               Cow position:chrX:8435576-8435204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 256

               
               
               Conread position:333-689
               
               
               Cow position:chrX:23974790-23974442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:333-689
               
               
               Cow position:chrX:30435996-30435623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-689
               
               
               Cow position:chrX:30836009-30836382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):61, 256

               
               
               Conread position:333-689
               
               
               Cow position:chrX:30965364-30964991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 200

               
               
               Conread position:333-723
               
               
               Cow position:chrX:24032352-24031948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 338

               
               
               Conread position:337-709
               
               
               Cow position:chrX:6044820-6044438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 226

               
               
               Conread position:338-697
               
               
               Cow position:chrX:2655350-2655714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:340-663
               
               
               Cow position:chrX:21494065-21494409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 319

               
               
               Conread position:340-689
               
               
               Cow position:chrX:42223125-42222774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 196

               
               
               Conread position:342-689
               
               
               Cow position:chrX:30286042-30286401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:347-689
               
               
               Cow position:chrX:18024356-18023997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 228

               
               
               Conread position:347-689
               
               
               Cow position:chrX:37080878-37080520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 186

               
               
               Conread position:350-666
               
               
               Cow position:chrX:1448851-1449161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 125

               
               
               Conread position:351-706
               
               
               Cow position:chrX:2184880-2185235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):45, 173

               
               
               Conread position:362-693
               
               
               Cow position:chrX:24345700-24346049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 227

               
               
               Conread position:369-693
               
               
               Cow position:chrX:29908544-29908202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 206

               
               
               Conread position:386-663
               
               
               Cow position:chrX:29082757-29083043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:386-689
               
               
               Cow position:chrX:38231586-38231272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:387-693
               
               
               Cow position:chrX:9836594-9836915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:390-681
               
               
               Cow position:chrX:34034060-34034355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 185

               
               
               Conread position:398-677
               
               
               Cow position:chrX:37959348-37959614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:405-690
               
               
               Cow position:chrX:16301387-16301097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:406-677
               
               
               Cow position:chrX:31934327-31934049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:415-723
               
               
               Cow position:chrX:21781048-21781369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:418-691
               
               
               Cow position:chrX:30086562-30086282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:421-681
               
               
               Cow position:chrX:19396950-19397220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 258

               
               
               Conread position:427-675
               
               
               Cow position:chrX:9535262-9535526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 159

               
               
               Conread position:427-693
               
               
               Cow position:chrX:24446678-24446954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:485-678
               
               
               Cow position:chrX:21190659-21190847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):176, 98