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Cow genome map

           
Conread name:
           
mA2-MI-P-A2-aex-a-12-1-UM.s1
        

               
Conread position:
               
480-677
               

               
Cow position:
               
chr1:89090377-89090179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
10, 150
               

               
Conread position:
               
481-667
               

               
Cow position:
               
chr1:68846546-68846362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
170, 66
               

               
Conread position:
               
481-670
               

               
Cow position:
               
chr1:98617834-98618024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr1:72986620-72986812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
157, 148
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chr1:81357485-81357301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
169, 14
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr1:11771627-11771434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr1:53396867-53397060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 112
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr1:54295981-54295785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
98, 153
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:3339829-3340026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 82
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:9262943-9262747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
180, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:22012798-22012603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
175, 104
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:58440135-58439941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:61563199-61563395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:68818743-68818551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
168, 70
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr1:73762383-73762187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
173, 155
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr1:52355509-52355318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:11289226-11289031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:18487014-18486819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:19158294-19158099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:19236334-19236139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
176, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:20846850-20846655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:23861546-23861351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:31106230-31106035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:33656022-33655827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:78921850-78921655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
172, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr1:80564914-80564719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chr1:25178858-25178671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr1:33548229-33548047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
169, 48
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr1:51444410-51444597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
164, 18
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr1:16338063-16337874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
166, 96
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr1:51967420-51967607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
170, 103
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr1:53649818-53650010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr1:69671440-69671263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
508-673
               

               
Cow position:
               
chr1:36646262-36646097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr1:24781288-24781122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
142, 44
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr1:46613106-46612939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
145, 69
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr1:49132983-49132815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
142, 127
               

               
Conread position:
               
516-677
               

               
Cow position:
               
chr1:102783735-102783895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
520-677
               

               
Cow position:
               
chr1:72139395-72139550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
529-677
               

               
Cow position:
               
chr1:7738924-7739072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
122, 104
               

               
Conread position:
               
531-671
               

               
Cow position:
               
chr1:19484029-19483891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
536-677
               

               
Cow position:
               
chr1:24580623-24580764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
115, 97
               

               
Conread position:
               
547-677
               

               
Cow position:
               
chr1:428200-428070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
104, 86
               

               
Conread position:
               
453-673
               

               
Cow position:
               
chr10:59840623-59840396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr10:34666754-34666529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 181
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr10:69530617-69530836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
458-672
               

               
Cow position:
               
chr10:21656290-21656501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
193, 59
               

               
Conread position:
               
466-677
               

               
Cow position:
               
chr10:31816927-31816714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
7, 169
               

               
Conread position:
               
467-673
               

               
Cow position:
               
chr10:46241206-46241414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
6, 180
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr10:27120738-27120529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 87
               

               
Conread position:
               
472-677
               

               
Cow position:
               
chr10:54376756-54376551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
166, 157
               

               
Conread position:
               
474-675
               

               
Cow position:
               
chr10:45484824-45484628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
175, 93
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr10:46194660-46194855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:1979794-1979598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:5785050-5784860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
169, 76
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:10147521-10147709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
168, 73
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:18041168-18041360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:19708953-19709148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 131
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:23913666-23913471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:24869804-24870000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
168, 150
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr10:51864140-51863956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
170, 52
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr10:25563366-25563171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr10:66496214-66496019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr10:1185970-1185779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
166, 68
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr10:7260079-7259887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
176, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr10:22529031-22528837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
105, 79
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr10:37914233-37914042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
166, 103
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr10:49145430-49145624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr10:44705508-44705327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
158, 133
               

               
Conread position:
               
500-674
               

               
Cow position:
               
chr10:53827787-53827961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
501-677
               

               
Cow position:
               
chr10:1377288-1377111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 129
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr10:37908931-37908767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
520-673
               

               
Cow position:
               
chr10:34656455-34656302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
131, 113
               

               
Conread position:
               
536-677
               

               
Cow position:
               
chr10:42213704-42213842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
536-677
               

               
Cow position:
               
chr10:66987700-66987559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
125, 93
               

               
Conread position:
               
539-677
               

               
Cow position:
               
chr10:22984479-22984346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
543-677
               

               
Cow position:
               
chr10:60959860-60959994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 90
               

               
Conread position:
               
549-677
               

               
Cow position:
               
chr10:29815542-29815668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
474-673
               

               
Cow position:
               
chr11:12354074-12353875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
182, 155
               

               
Conread position:
               
481-666
               

               
Cow position:
               
chr11:7374269-7374452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
168, 60
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chr11:12763364-12763162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
131, 161
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr11:7324335-7324529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
165, 61
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr11:7380895-7381089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
169, 60
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr11:18067980-18067782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 70
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr11:35242044-35241848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr11:75511367-75511167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr11:84773990-84774186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
482-674
               

               
Cow position:
               
chr11:1493022-1492830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
161, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr11:24493982-24493787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr11:32477986-32477791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
172, 153
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr11:34638678-34638483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr11:41261102-41260907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr11:47973026-47972831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr11:50510846-50510651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr11:10365557-10365379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
166, 34
               

               
Conread position:
               
485-674
               

               
Cow position:
               
chr11:58399161-58399350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr11:17980462-17980271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
169, 7
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr11:21729191-21728999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
165, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr11:52128038-52128230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr11:73513543-73513351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
486-673
               

               
Cow position:
               
chr11:44875308-44875494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 73
               

               
Conread position:
               
486-677
               

               
Cow position:
               
chr11:59871646-59871836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 65
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr11:35542224-35542047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
501-675
               

               
Cow position:
               
chr11:21619984-21620159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
9, 129
               

               
Conread position:
               
511-677
               

               
Cow position:
               
chr11:49935893-49935727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
140, 122
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr11:35142476-35142311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
467-674
               

               
Cow position:
               
chr12:5713056-5713265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
6, 168
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr12:19155751-19155555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
151, 135
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr12:21719067-21718877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr12:62098-61903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr12:1511654-1511459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
176, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr12:8841946-8841754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
165, 99
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr12:15231144-15231339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
169, 154
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr12:34176474-34176669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
172, 145
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr12:40306411-40306599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr12:22748327-22748520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 143
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr12:25148505-25148314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
169, 87
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr12:27929679-27929487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr12:28013119-28012927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
487-677
               

               
Cow position:
               
chr12:17981524-17981704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
164, 42
               

               
Conread position:
               
500-673
               

               
Cow position:
               
chr12:20459593-20459419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
544-677
               

               
Cow position:
               
chr12:19496203-19496069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
105, 89
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr13:38013766-38013559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
6, 64
               

               
Conread position:
               
472-673
               

               
Cow position:
               
chr13:22907378-22907175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
99, 90
               

               
Conread position:
               
481-667
               

               
Cow position:
               
chr13:34051522-34051708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr13:3001442-3001259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
170, 78
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr13:22714800-22714995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
47, 168
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr13:32734287-32734095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:17495984-17496180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 47
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:19843372-19843566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:21906018-21905816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
117, 161
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:31730671-31730475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:43975051-43974855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
177, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:44324061-44323865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:47577493-47577688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr13:53575173-53574978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
170, 123
               

               
Conread position:
               
482-668
               

               
Cow position:
               
chr13:143218-143032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr13:2725909-2725715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr13:9048496-9048687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
102, 87
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr13:838506-838311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr13:26204557-26204363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
179, 41
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr13:32253450-32253255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr13:2805378-2805186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr13:19394214-19394028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
166, 26
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr13:14411252-14411075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
474-673
               

               
Cow position:
               
chr14:9512167-9511970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
176, 57
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr14:11151146-11150954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
157, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr14:12740279-12740087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr14:423956-424151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr14:8102902-8102712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr14:12483171-12483367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
168, 160
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr14:12545434-12545634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr14:21533908-21534101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 108
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr14:41478519-41478717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
170, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr14:12858866-12858671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr14:15336862-15336667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr14:34629424-34629229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
172, 145
               

               
Conread position:
               
492-671
               

               
Cow position:
               
chr14:28796796-28796617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
164, 153
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr14:13860752-13860575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr14:29044884-29044707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr14:45025840-45025663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
504-677
               

               
Cow position:
               
chr14:45576439-45576612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
147, 129
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr14:10542088-10541923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 96
               

               
Conread position:
               
454-676
               

               
Cow position:
               
chr15:41359748-41359968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr15:33305027-33304817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr15:29341331-29341143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
169, 80
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr15:30045172-30045366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 123
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr15:26157784-26157978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
168, 89
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr15:39091420-39091228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
170, 48
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr15:3892363-3892556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr15:6658341-6658143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr15:6758702-6758507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr15:28487353-28487159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
172, 50
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr15:6152866-6152678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr15:6065949-6065760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr15:24043560-24043745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
166, 42
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr15:33229273-33229083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
486-675
               

               
Cow position:
               
chr15:25909826-25909640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
163, 38
               

               
Conread position:
               
492-677
               

               
Cow position:
               
chr15:2898212-2898027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
166, 137
               

               
Conread position:
               
492-677
               

               
Cow position:
               
chr15:4219129-4218944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
492-677
               

               
Cow position:
               
chr15:32065504-32065319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
497-677
               

               
Cow position:
               
chr15:21533347-21533167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
157, 149
               

               
Conread position:
               
498-677
               

               
Cow position:
               
chr15:21153030-21152851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
163, 131
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr15:21645028-21644851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
138, 129
               

               
Conread position:
               
504-675
               

               
Cow position:
               
chr15:21911513-21911346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
147, 25
               

               
Conread position:
               
506-677
               

               
Cow position:
               
chr15:36356270-36356099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
145, 127
               

               
Conread position:
               
507-677
               

               
Cow position:
               
chr15:13286305-13286135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
509-676
               

               
Cow position:
               
chr15:20173188-20173020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
20, 121
               

               
Conread position:
               
523-673
               

               
Cow position:
               
chr15:17237057-17236908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
530-677
               

               
Cow position:
               
chr15:25165281-25165134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
466-673
               

               
Cow position:
               
chr16:39475239-39475446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
466-677
               

               
Cow position:
               
chr16:47772670-47772886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr16:27730955-27730763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr16:37478434-37478243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
175, 77
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr16:7674035-7673839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr16:1734166-1734356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 36
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr16:6264550-6264355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr16:20634790-20634592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
93, 154
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr16:24615638-24615443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr16:45465490-45465295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr16:39615654-39615844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 149
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr16:45755182-45755000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr16:13722144-13721967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
156, 146
               

               
Conread position:
               
507-673
               

               
Cow position:
               
chr16:49142621-49142455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 126
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr16:5665558-5665723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
142, 117
               

               
Conread position:
               
558-677
               

               
Cow position:
               
chr16:48371600-48371481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 75
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr17:21304246-21304471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr17:2033185-2033368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr17:20091619-20091430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
171, 22
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr17:33792073-33792257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr17:33934854-33934658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr17:5806502-5806307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr17:15709006-15708811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr17:43471585-43471409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
154, 53
               

               
Conread position:
               
524-677
               

               
Cow position:
               
chr17:8994307-8994158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
539-677
               

               
Cow position:
               
chr17:3780699-3780838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
544-676
               

               
Cow position:
               
chr17:38629205-38629337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
107, 89
               

               
Conread position:
               
549-677
               

               
Cow position:
               
chr17:29041845-29041719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
553-667
               

               
Cow position:
               
chr17:11913691-11913577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 80
               

               
Conread position:
               
553-677
               

               
Cow position:
               
chr17:18324343-18324222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr18:12269348-12269558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
474-619
               

               
Cow position:
               
chr18:51600232-51600378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr18:43472799-43473003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 156
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr18:29863395-29863203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
175, 148
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr18:22791207-22791020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
170, 52
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr18:2853581-2853382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
134, 75
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr18:6104194-6103996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 154
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr18:6882046-6881850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr18:44261278-44261473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
482-667
               

               
Cow position:
               
chr18:27994774-27994589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-672
               

               
Cow position:
               
chr18:16471968-16471777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 152
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr18:24619639-24619834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
172, 145
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr18:35444158-35443963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr18:11778556-11778744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr18:53872106-53872297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 114
               

               
Conread position:
               
506-677
               

               
Cow position:
               
chr18:14965519-14965690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
145, 127
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr18:50093207-50093039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 120
               

               
Conread position:
               
510-669
               

               
Cow position:
               
chr18:23676491-23676332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
140, 123
               

               
Conread position:
               
516-676
               

               
Cow position:
               
chr18:30844668-30844500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 121
               

               
Conread position:
               
524-677
               

               
Cow position:
               
chr18:33406559-33406713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
546-677
               

               
Cow position:
               
chr18:16025385-16025253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
457-677
               

               
Cow position:
               
chr19:42724856-42725070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 149
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr19:17883180-17883372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr19:46821071-46821264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr19:47670125-47670321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr19:35621744-35621939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
497-673
               

               
Cow position:
               
chr19:436107-435931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
157, 132
               

               
Conread position:
               
503-677
               

               
Cow position:
               
chr19:1663308-1663483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
503-677
               

               
Cow position:
               
chr19:20672346-20672184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
147, 46
               

               
Conread position:
               
533-674
               

               
Cow position:
               
chr19:32952093-32952229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
559-672
               

               
Cow position:
               
chr19:15720581-15720467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
451-673
               

               
Cow position:
               
chr2:42668078-42667855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
454-624
               

               
Cow position:
               
chr2:35949769-35949599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr2:383492-383269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
478-677
               

               
Cow position:
               
chr2:63058698-63058895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
173, 7
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr2:28646967-28646775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
170, 165
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr2:44476829-44476638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
173, 85
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:15569426-15569231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
170, 41
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:19288655-19288460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 102
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:23492452-23492648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:31498892-31499083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
170, 76
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:41183678-41183874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:47182091-47181895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 145
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:48360606-48360802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr2:51024505-51024327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
170, 36
               

               
Conread position:
               
482-674
               

               
Cow position:
               
chr2:18521154-18520962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-676
               

               
Cow position:
               
chr2:45937068-45936874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
172, 149
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:209440-209251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:9962410-9962215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
174, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:11813890-11813695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:15241502-15241307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:17119418-17119223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:49827878-49827683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
177, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:58565093-58564903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:72940094-72939899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr2:84102010-84101815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
172, 164
               

               
Conread position:
               
485-676
               

               
Cow position:
               
chr2:60955295-60955484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
170, 51
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr2:63707487-63707295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
176, 144
               

               
Conread position:
               
486-674
               

               
Cow position:
               
chr2:10657178-10656995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
163, 62
               

               
Conread position:
               
489-677
               

               
Cow position:
               
chr2:32417954-32417766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
162, 144
               

               
Conread position:
               
496-674
               

               
Cow position:
               
chr2:1426969-1426797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
155, 37
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr2:20856920-20856739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
155, 137
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr2:18350720-18350543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr2:43756964-43756787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
504-677
               

               
Cow position:
               
chr2:9174328-9174155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
147, 129
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr2:67319751-67319583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
510-677
               

               
Cow position:
               
chr2:4923346-4923178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
520-673
               

               
Cow position:
               
chr2:72963651-72963501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
529-677
               

               
Cow position:
               
chr2:43047063-43046915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
132, 100
               

               
Conread position:
               
539-673
               

               
Cow position:
               
chr2:38659809-38659675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 94
               

               
Conread position:
               
460-677
               

               
Cow position:
               
chr20:3782545-3782330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr20:25845445-25845255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
173, 100
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr20:6259114-6258920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr20:7512757-7512566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
170, 80
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr20:19364703-19364511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
170, 48
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr20:24399687-24399491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
175, 164
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr20:24904366-24904170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr20:25658845-25658650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
170, 47
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr20:23466471-23466279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 148
               

               
Conread position:
               
482-675
               

               
Cow position:
               
chr20:24568090-24567897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr20:3808594-3808399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr20:5086158-5085963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr20:7597678-7597483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr20:26053174-26052979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr20:28113172-28113352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
164, 64
               

               
Conread position:
               
485-674
               

               
Cow position:
               
chr20:4204836-4205020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
166, 76
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr20:14741369-14741560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr20:28956769-28956577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
164, 148
               

               
Conread position:
               
486-637
               

               
Cow position:
               
chr20:42923738-42923885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
487-674
               

               
Cow position:
               
chr20:6097480-6097294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
164, 117
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr20:8970696-8970519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
503-675
               

               
Cow position:
               
chr20:33247105-33246933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
153, 126
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr20:20439764-20439595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
512-673
               

               
Cow position:
               
chr20:30385036-30384875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 117
               

               
Conread position:
               
538-674
               

               
Cow position:
               
chr20:14877295-14877431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
113, 95
               

               
Conread position:
               
558-677
               

               
Cow position:
               
chr20:18322303-18322183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
454-674
               

               
Cow position:
               
chr21:48262075-48262297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 181
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr21:31275619-31275827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 38
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr21:25472480-25472683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
481-661
               

               
Cow position:
               
chr21:32300566-32300741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
165, 65
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr21:28915687-28915495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr21:30595802-30595610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
173, 165
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr21:49655895-49655703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
173, 164
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr21:44218967-44219161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
170, 155
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr21:22463479-22463675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr21:22855201-22855390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr21:28908852-28908655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
161, 95
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr21:33965431-33965235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
173, 165
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr21:33983987-33983791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr21:5642547-5642355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
172, 97
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr21:30966654-30966459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
485-675
               

               
Cow position:
               
chr21:38450691-38450505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
492-673
               

               
Cow position:
               
chr21:81046-81226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
157, 111
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr21:18847031-18846851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
515-677
               

               
Cow position:
               
chr21:2293860-2293698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
141, 121
               

               
Conread position:
               
515-677
               

               
Cow position:
               
chr21:26757401-26757239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 114
               

               
Conread position:
               
528-677
               

               
Cow position:
               
chr21:30627744-30627595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 117
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr22:14510431-14510206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 181
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr22:14817539-14817329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
472-677
               

               
Cow position:
               
chr22:36572428-36572229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
179, 38
               

               
Conread position:
               
474-674
               

               
Cow position:
               
chr22:8480326-8480525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
177, 124
               

               
Conread position:
               
474-674
               

               
Cow position:
               
chr22:8504571-8504770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
177, 124
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr22:12625449-12625248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
174, 104
               

               
Conread position:
               
475-674
               

               
Cow position:
               
chr22:10160833-10161036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 162
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr22:1517927-1517735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
173, 165
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr22:29956076-29955884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:17325381-17325191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
173, 52
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:34931964-34931768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:36503586-36503390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:36543355-36543162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 105
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:36556024-36555837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
170, 36
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:36584514-36584318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr22:43788843-43789038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 122
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr22:8776602-8776407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr22:20237458-20237263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr22:21193086-21192891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr22:44366094-44365899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
172, 164
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr22:36595390-36595198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
500-673
               

               
Cow position:
               
chr22:10313762-10313934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
503-673
               

               
Cow position:
               
chr22:41972401-41972233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
148, 49
               

               
Conread position:
               
520-673
               

               
Cow position:
               
chr22:42500212-42500059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 109
               

               
Conread position:
               
551-676
               

               
Cow position:
               
chr22:14005132-14005256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 34
               

               
Conread position:
               
565-677
               

               
Cow position:
               
chr22:13017801-13017689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
481-671
               

               
Cow position:
               
chr23:29625082-29625272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 151
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr23:37199406-37199210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 169
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chr23:26318392-26318583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
167, 126
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr23:6593816-6593621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
170, 117
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr23:7359569-7359760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
169, 97
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr23:14265455-14265651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
157, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr23:29460143-29459949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
75, 152
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr23:771382-771187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr23:416040-416231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
166, 87
               

               
Conread position:
               
487-677
               

               
Cow position:
               
chr23:25670656-25670476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
490-677
               

               
Cow position:
               
chr23:17403730-17403918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
59, 144
               

               
Conread position:
               
505-673
               

               
Cow position:
               
chr23:19492981-19493149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
133, 124
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr24:14173592-14173367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
24, 183
               

               
Conread position:
               
481-627
               

               
Cow position:
               
chr24:31381601-31381746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr24:5863152-5862958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
173, 100
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr24:15371981-15372172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
167, 129
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr24:31356803-31356993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
168, 39
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr24:36028313-36028118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr24:1841670-1841475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr24:26388689-26388496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
172, 47
               

               
Conread position:
               
485-671
               

               
Cow position:
               
chr24:20284005-20283821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 91
               

               
Conread position:
               
487-677
               

               
Cow position:
               
chr24:29179569-29179763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 150
               

               
Conread position:
               
503-677
               

               
Cow position:
               
chr24:7748849-7749023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
151, 126
               

               
Conread position:
               
516-677
               

               
Cow position:
               
chr24:207756-207599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
145, 37
               

               
Conread position:
               
520-674
               

               
Cow position:
               
chr24:17368685-17368528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
520-677
               

               
Cow position:
               
chr24:40036715-40036557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
522-673
               

               
Cow position:
               
chr24:29181600-29181745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
536-676
               

               
Cow position:
               
chr24:25992185-25992052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr25:449899-449704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
177, 92
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr25:14790106-14790297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
168, 65
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr25:9958152-9957962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
169, 108
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr25:18886582-18886387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr25:35372714-35372519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-676
               

               
Cow position:
               
chr25:19367793-19367602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr25:19337408-19337231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr25:34164644-34164467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 129
               

               
Conread position:
               
536-676
               

               
Cow position:
               
chr25:17993188-17993048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
552-674
               

               
Cow position:
               
chr25:4522842-4522720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
474-675
               

               
Cow position:
               
chr26:31138799-31138599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
175, 129
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr26:14488108-14487907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 102
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr26:9694642-9694446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
175, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr26:14173227-14173413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
482-676
               

               
Cow position:
               
chr26:2201685-2201879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
167, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr26:1390136-1390332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr26:30594474-30594279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr26:35560906-35560711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr26:27987432-27987239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 161
               

               
Conread position:
               
504-676
               

               
Cow position:
               
chr26:24238883-24239050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
147, 50
               

               
Conread position:
               
469-677
               

               
Cow position:
               
chr27:25784660-25784450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
480-675
               

               
Cow position:
               
chr27:15374926-15375117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
171, 18
               

               
Conread position:
               
480-677
               

               
Cow position:
               
chr27:24240004-24239809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
171, 25
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr27:4818525-4818716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
166, 69
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chr27:4804897-4805090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
165, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr27:1501634-1501819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr27:14669306-14669495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
168, 111
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr27:28051674-28051480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
170, 51
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr27:3653587-3653395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr27:22647495-22647327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
516-677
               

               
Cow position:
               
chr27:15405772-15405930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
133, 71
               

               
Conread position:
               
480-677
               

               
Cow position:
               
chr28:2280747-2280552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
169, 67
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr28:5748551-5748359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr28:26419846-26419654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
173, 165
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr28:10280007-10280191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr28:17030940-17030745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
169, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr28:3745122-3745314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
170, 39
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr28:8786467-8786667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr28:8971232-8971427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr28:34678041-34677846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
170, 55
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr28:20967513-20967322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
168, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr28:4929294-4929099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr28:6535642-6535447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr28:7907389-7907195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
486-677
               

               
Cow position:
               
chr28:10162390-10162581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
163, 147
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr28:1836967-1837139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
503-677
               

               
Cow position:
               
chr28:12429385-12429556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
554-677
               

               
Cow position:
               
chr28:15715200-15715322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 79
               

               
Conread position:
               
451-671
               

               
Cow position:
               
chr29:26161738-26161517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
474-676
               

               
Cow position:
               
chr29:10237548-10237346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
176, 159
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr29:14314030-14313827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 155
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr29:45336-45146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 95
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr29:7812071-7811879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr29:16013045-16012859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
168, 84
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr29:7701258-7701068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
169, 81
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr29:19620141-19619951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
172, 15
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr29:15072354-15072159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr29:16036290-16036095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr29:31094459-31094263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 148
               

               
Conread position:
               
485-676
               

               
Cow position:
               
chr29:36208827-36209016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
165, 43
               

               
Conread position:
               
486-677
               

               
Cow position:
               
chr29:24577783-24577975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
487-677
               

               
Cow position:
               
chr29:17153377-17153559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
162, 66
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr29:27976860-27976683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
451-673
               

               
Cow position:
               
chr3:47272871-47272647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chr3:49732784-49732560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
462-677
               

               
Cow position:
               
chr3:26919752-26919957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr3:77225757-77225969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 168
               

               
Conread position:
               
472-675
               

               
Cow position:
               
chr3:30938527-30938730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 161
               

               
Conread position:
               
474-676
               

               
Cow position:
               
chr3:3885164-3884964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 78
               

               
Conread position:
               
481-672
               

               
Cow position:
               
chr3:56645291-56645100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
157, 148
               

               
Conread position:
               
481-672
               

               
Cow position:
               
chr3:58034597-58034406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
173, 155
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr3:26566820-26567007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
140, 54
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr3:54654135-54653943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr3:65988961-65989152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
173, 77
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr3:16657827-16657634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr3:31423087-31422891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr3:37983325-37983130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
170, 15
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr3:56148332-56148531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr3:15082893-15082709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
482-675
               

               
Cow position:
               
chr3:64683971-64683779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:2866614-2866419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
177, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:6442109-6442304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:7155766-7155571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:24573126-24572931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
174, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:28435658-28435463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:37021369-37021175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:43525698-43525503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:53880226-53880031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
172, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:56336917-56336723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
156, 71
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr3:66829898-66829703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
174, 147
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr3:49416804-49416615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 145
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr3:56696892-56697080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
486-676
               

               
Cow position:
               
chr3:15663399-15663209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
164, 147
               

               
Conread position:
               
487-672
               

               
Cow position:
               
chr3:52257469-52257284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
164, 146
               

               
Conread position:
               
493-673
               

               
Cow position:
               
chr3:21303512-21303333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
497-677
               

               
Cow position:
               
chr3:52664453-52664631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
154, 101
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr3:2834480-2834303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr3:38862787-38862958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr3:78520106-78520283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
507-677
               

               
Cow position:
               
chr3:8605839-8605674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
508-673
               

               
Cow position:
               
chr3:24443036-24442871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr3:36862032-36861867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 74
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr3:66968811-66968643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 137
               

               
Conread position:
               
521-677
               

               
Cow position:
               
chr3:75772055-75771899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 108
               

               
Conread position:
               
454-676
               

               
Cow position:
               
chr4:36669398-36669611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
467-673
               

               
Cow position:
               
chr4:1047434-1047227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 180
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chr4:44901103-44901293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
169, 71
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr4:4086517-4086324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
170, 42
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr4:3284513-3284317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr4:4185023-4185219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
167, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr4:17775924-17775728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr4:19108208-19108011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr4:27293045-27292847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
103, 154
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr4:27539511-27539704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
161, 97
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr4:27518526-27518331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
176, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr4:33020786-33020591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr4:44778347-44778151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
97, 148
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr4:54972896-54973091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
172, 163
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr4:34700702-34700515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 127
               

               
Conread position:
               
485-676
               

               
Cow position:
               
chr4:1239569-1239383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
168, 66
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr4:3474525-3474717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
164, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr4:66174473-66174280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
76, 51
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr4:67600818-67600629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
164, 7
               

               
Conread position:
               
500-673
               

               
Cow position:
               
chr4:20027656-20027484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
149, 36
               

               
Conread position:
               
500-675
               

               
Cow position:
               
chr4:8560135-8559961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr4:33629168-33628991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr4:62962495-62962319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
158, 28
               

               
Conread position:
               
510-677
               

               
Cow position:
               
chr4:26745392-26745559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 135
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr4:65816780-65816618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
553-677
               

               
Cow position:
               
chr4:19140919-19141043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 80
               

               
Conread position:
               
31-235
               

               
Cow position:
               
chr5:5197831-5198033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
157, 170
               

               
Conread position:
               
232-459
               

               
Cow position:
               
chr5:5198236-5198476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr5:4349050-4348847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
179, 164
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr5:3501183-3500991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
170, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr5:6151887-6151695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chr5:34670143-34669951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
169, 118
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr5:59072099-59071905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr5:62377319-62377505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
169, 68
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr5:31916570-31916761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr5:15723382-15723175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr5:21827771-21827961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
174, 68
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr5:26466585-26466779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
170, 42
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr5:71457101-71456905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
482-672
               

               
Cow position:
               
chr5:33775821-33775638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr5:19970086-19969895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
169, 151
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr5:4015926-4015731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
172, 163
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr5:4434558-4434363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr5:14942870-14942675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr5:34683414-34683219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr5:36370046-36369851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
487-677
               

               
Cow position:
               
chr5:72046712-72046522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
168, 146
               

               
Conread position:
               
500-673
               

               
Cow position:
               
chr5:43991247-43991419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
503-673
               

               
Cow position:
               
chr5:32697831-32697665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr5:57336388-57336223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
149, 117
               

               
Conread position:
               
520-677
               

               
Cow position:
               
chr5:57936138-57935981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
131, 113
               

               
Conread position:
               
451-673
               

               
Cow position:
               
chr6:27526910-27526687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
477-677
               

               
Cow position:
               
chr6:4274150-4274350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 156
               

               
Conread position:
               
481-667
               

               
Cow position:
               
chr6:52978074-52977888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr6:3485335-3485143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
175, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr6:3893559-3893366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr6:5946691-5946499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr6:34405385-34405577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 89
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr6:55539187-55538995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr6:15924511-15924315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
168, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr6:32286638-32286831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
168, 145
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr6:47573882-47574070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
170, 90
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr6:52249424-52249234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
170, 75
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr6:33466043-33466234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:328278-328083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:452178-451983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
176, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:1498284-1498478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
169, 54
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:28185234-28185039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:31913090-31912895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:53543398-53543203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr6:56452010-56451815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr6:6459202-6459387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 102
               

               
Conread position:
               
485-676
               

               
Cow position:
               
chr6:11193498-11193308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
166, 58
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr6:18803970-18803779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
153, 43
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr6:38438694-38438886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr6:65867872-65868064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
163, 148
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr6:40278162-40278339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
154, 127
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr6:43049092-43048915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
161, 129
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr6:6569115-6568951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 20
               

               
Conread position:
               
511-677
               

               
Cow position:
               
chr6:32018998-32018835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
525-674
               

               
Cow position:
               
chr6:18963214-18963067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
451-673
               

               
Cow position:
               
chr7:8140936-8140715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
203, 10
               

               
Conread position:
               
474-675
               

               
Cow position:
               
chr7:21568272-21568071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 159
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr7:47910148-47909949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 44
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr7:48242375-48242571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
480-674
               

               
Cow position:
               
chr7:45928996-45928802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 153
               

               
Conread position:
               
480-677
               

               
Cow position:
               
chr7:30116048-30115851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 152
               

               
Conread position:
               
481-672
               

               
Cow position:
               
chr7:45945679-45945488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
157, 148
               

               
Conread position:
               
481-675
               

               
Cow position:
               
chr7:33718878-33719079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
88, 159
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:12660034-12659845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 75
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:26456067-26455871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
173, 165
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:27508557-27508754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:29011647-29011454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
170, 100
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:44590895-44590699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:56887835-56887639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:62732154-62732346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
172, 48
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:63947937-63947746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr7:66908419-66908615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
173, 165
               

               
Conread position:
               
482-626
               

               
Cow position:
               
chr7:18864661-18864517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr7:1367518-1367327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-676
               

               
Cow position:
               
chr7:54187233-54187040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
172, 76
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr7:27099094-27098899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr7:41747554-41747359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 163
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr7:50536110-50535915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr7:61832317-61832123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr7:61824874-61824686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-675
               

               
Cow position:
               
chr7:13238427-13238237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-675
               

               
Cow position:
               
chr7:69018434-69018619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 67
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr7:982415-982223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
176, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr7:6666680-6666872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
169, 142
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr7:22792040-22792232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
497-673
               

               
Cow position:
               
chr7:47190551-47190375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
157, 132
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr7:35742753-35742930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
151, 133
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr7:44745644-44745479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
142, 134
               

               
Conread position:
               
520-677
               

               
Cow position:
               
chr7:48722868-48722711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
131, 113
               

               
Conread position:
               
524-677
               

               
Cow position:
               
chr7:20796252-20796099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 105
               

               
Conread position:
               
536-677
               

               
Cow position:
               
chr7:58302943-58302802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 97
               

               
Conread position:
               
559-676
               

               
Cow position:
               
chr7:21009912-21009795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr8:50316203-50315990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
6, 169
               

               
Conread position:
               
474-667
               

               
Cow position:
               
chr8:29918617-29918424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
176, 159
               

               
Conread position:
               
481-672
               

               
Cow position:
               
chr8:61197911-61197720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-676
               

               
Cow position:
               
chr8:18080325-18080518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
168, 126
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr8:8386900-8387096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
107, 95
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr8:8398782-8398587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
173, 36
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr8:12446035-12445847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
172, 38
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr8:51019798-51019607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr8:1345610-1345415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr8:7427558-7427363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
178, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr8:14629866-14629671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr8:21090970-21090775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr8:33045642-33045447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
485-672
               

               
Cow position:
               
chr8:19194045-19194229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
485-673
               

               
Cow position:
               
chr8:35212237-35212049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-675
               

               
Cow position:
               
chr8:18056645-18056835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 148
               

               
Conread position:
               
485-676
               

               
Cow position:
               
chr8:20569330-20569516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr8:35128431-35128239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
169, 161
               

               
Conread position:
               
486-677
               

               
Cow position:
               
chr8:3291783-3291595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
163, 71
               

               
Conread position:
               
492-675
               

               
Cow position:
               
chr8:11118580-11118397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
162, 137
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr8:1110839-1111016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 127
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr8:60770024-60769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 129
               

               
Conread position:
               
503-677
               

               
Cow position:
               
chr8:50949228-50949061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
146, 68
               

               
Conread position:
               
504-673
               

               
Cow position:
               
chr8:39166019-39165851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
147, 19
               

               
Conread position:
               
506-677
               

               
Cow position:
               
chr8:38043745-38043576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chr8:4615243-4615075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr8:47066211-47066047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
523-658
               

               
Cow position:
               
chr8:12813761-12813895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
535-677
               

               
Cow position:
               
chr8:49964509-49964367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
126, 94
               

               
Conread position:
               
454-673
               

               
Cow position:
               
chr9:59508195-59507974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 181
               

               
Conread position:
               
474-677
               

               
Cow position:
               
chr9:23421592-23421795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
177, 159
               

               
Conread position:
               
480-677
               

               
Cow position:
               
chr9:36830038-36829843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
181, 17
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr9:19156279-19156087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chr9:58615682-58615491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
170, 122
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:2548682-2548486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
173, 166
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:9357173-9357378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:17301113-17300920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:30282003-30281807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:43856525-43856329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
170, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:44920250-44920444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr9:51692607-51692411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 154
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chr9:64012215-64012024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 145
               

               
Conread position:
               
482-674
               

               
Cow position:
               
chr9:2873488-2873680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
172, 164
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr9:5452626-5452431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr9:31417502-31417307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chr9:48795278-48795083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
485-672
               

               
Cow position:
               
chr9:24918271-24918084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
169, 160
               

               
Conread position:
               
485-674
               

               
Cow position:
               
chr9:1939016-1938829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
164, 99
               

               
Conread position:
               
485-674
               

               
Cow position:
               
chr9:18071501-18071688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
166, 58
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr9:17007942-17007750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
166, 148
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr9:23028999-23028821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
166, 57
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chr9:61740020-61739842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
492-673
               

               
Cow position:
               
chr9:18506800-18506619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
162, 137
               

               
Conread position:
               
497-677
               

               
Cow position:
               
chr9:2214168-2214348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
159, 149
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chr9:2834968-2834791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
505-670
               

               
Cow position:
               
chr9:34688522-34688685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 105
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr9:772202-772039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr9:1062651-1062487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
512-677
               

               
Cow position:
               
chr9:1071240-1071075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
149, 117
               

               
Conread position:
               
524-677
               

               
Cow position:
               
chr9:873712-873861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
542-677
               

               
Cow position:
               
chr9:28774193-28774058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 91
               

               
Conread position:
               
453-677
               

               
Cow position:
               
chrX:13178715-13178490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
454-676
               

               
Cow position:
               
chrX:27977940-27977716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 177
               

               
Conread position:
               
454-677
               

               
Cow position:
               
chrX:41885285-41885061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
459-677
               

               
Cow position:
               
chrX:29047014-29047232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
481-671
               

               
Cow position:
               
chrX:4906066-4905876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 148
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chrX:2479707-2479515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chrX:23039062-23038871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
481-673
               

               
Cow position:
               
chrX:23342070-23341878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 166
               

               
Conread position:
               
481-674
               

               
Cow position:
               
chrX:22616450-22616257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
173, 152
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chrX:620340-620147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
170, 75
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chrX:10413052-10412858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chrX:24109681-24109487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
482-673
               

               
Cow position:
               
chrX:18950814-18950623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:3372930-3372735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:5289762-5289567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:5647182-5646987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:5866068-5866263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
156, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:9642510-9642315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:14125322-14125127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
174, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:18024070-18023875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:19398700-19398895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
156, 145
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:19474226-19474031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:24769934-24769739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:25289757-25289562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
177, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:26760646-26760451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:29930470-29930275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:30053546-30053351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:30200070-30199875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
482-677
               

               
Cow position:
               
chrX:32064245-32064051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
172, 84
               

               
Conread position:
               
483-677
               

               
Cow position:
               
chrX:4406807-4407000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 50
               

               
Conread position:
               
485-674
               

               
Cow position:
               
chrX:24321703-24321514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
176, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chrX:9261339-9261532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chrX:11991225-11991040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chrX:30180999-30180807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
485-677
               

               
Cow position:
               
chrX:39560734-39560542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
169, 144
               

               
Conread position:
               
500-628
               

               
Cow position:
               
chrX:27029071-27029198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
500-660
               

               
Cow position:
               
chrX:4558260-4558420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
149, 133
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chrX:2560018-2559843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
154, 35
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chrX:11499834-11499659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
154, 95
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chrX:17782440-17782617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
500-677
               

               
Cow position:
               
chrX:23986190-23986367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
154, 129
               

               
Conread position:
               
503-673
               

               
Cow position:
               
chrX:40560595-40560427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chrX:3418187-3418019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
147, 120
               

               
Conread position:
               
509-677
               

               
Cow position:
               
chrX:31978891-31978724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
129, 94
               

               
Conread position:
               
524-677
               

               
Cow position:
               
chrX:5280887-5280735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 8