Cow genome map
| Conread name: | mA2-MI-P-A2-aey-f-01-1-UM.s1 |
| Conread position: | 221-514 |
| Cow position: | chr1:76254663-76254373 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 221-608 |
| Cow position: | chr1:72158232-72158614 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 22 |
| Conread position: | 272-515 |
| Cow position: | chr1:60822430-60822673 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-613 |
| Cow position: | chr1:82396322-82396189 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 1-546 |
| Cow position: | chr10:27289581-27290126 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-349 |
| Cow position: | chr10:22740228-22740356 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-363 |
| Cow position: | chr11:31447061-31447425 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 174 |
| Conread position: | 75-521 |
| Cow position: | chr11:68999098-68999546 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 323 |
| Conread position: | 253-606 |
| Cow position: | chr11:78298416-78298762 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 217 |
| Conread position: | 299-606 |
| Cow position: | chr11:35219310-35219622 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 271 |
| Conread position: | 406-608 |
| Cow position: | chr11:31447908-31448106 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 223-607 |
| Cow position: | chr12:2955517-2955902 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 268 |
| Conread position: | 221-433 |
| Cow position: | chr13:59902924-59902710 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 223-451 |
| Cow position: | chr13:25956967-25957175 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 436-594 |
| Cow position: | chr13:25957236-25957393 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 146, 122 |
| Conread position: | 1-521 |
| Cow position: | chr15:23806359-23805841 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 177 |
| Conread position: | 220-447 |
| Cow position: | chr15:15051925-15052151 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 221-495 |
| Cow position: | chr15:23458906-23458630 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 134 |
| Conread position: | 453-605 |
| Cow position: | chr15:15052196-15052357 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 1-613 |
| Cow position: | chr16:2455695-2456304 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 343 |
| Conread position: | 221-613 |
| Cow position: | chr17:27703443-27703051 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 346 |
| Conread position: | 1-611 |
| Cow position: | chr18:45583124-45583727 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 568, 492 |
| Conread position: | 221-498 |
| Cow position: | chr18:38987449-38987181 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 9-199 |
| Cow position: | chr19:47779894-47779706 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 220-603 |
| Cow position: | chr19:13447207-13446825 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 74 |
| Conread position: | 221-607 |
| Cow position: | chr19:29683898-29684272 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 40 |
| Conread position: | 223-606 |
| Cow position: | chr19:8517956-8518338 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 302-611 |
| Cow position: | chr19:47779703-47779414 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 281, 53 |
| Conread position: | 302-613 |
| Cow position: | chr19:10101055-10100746 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 104 |
| Conread position: | 32-613 |
| Cow position: | chr2:43729955-43730488 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 17 |
| Conread position: | 166-611 |
| Cow position: | chr2:19056198-19056644 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 385 |
| Conread position: | 220-609 |
| Cow position: | chr2:61152357-61152732 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 221-609 |
| Cow position: | chr2:50609948-50610335 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 325 |
| Conread position: | 224-606 |
| Cow position: | chr2:67612017-67611622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 280 |
| Conread position: | 221-602 |
| Cow position: | chr21:22836863-22836480 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 203 |
| Conread position: | 1-604 |
| Cow position: | chr23:13842894-13842291 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 216 |
| Conread position: | 221-605 |
| Cow position: | chr24:28022880-28022494 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 273 |
| Conread position: | 221-613 |
| Cow position: | chr24:27083113-27083500 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 225 |
| Conread position: | 272-606 |
| Cow position: | chr24:2664499-2664178 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 67 |
| Conread position: | 221-420 |
| Cow position: | chr26:13267691-13267890 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-604 |
| Cow position: | chr26:13268241-13268446 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 220-610 |
| Cow position: | chr27:24299411-24299799 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 48 |
| Conread position: | 220-613 |
| Cow position: | chr27:22541226-22541618 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 48 |
| Conread position: | 86-599 |
| Cow position: | chr28:8130575-8130073 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 29 |
| Conread position: | 201-418 |
| Cow position: | chr29:8900934-8901144 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 423-602 |
| Cow position: | chr29:8901453-8901636 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 221-612 |
| Cow position: | chr3:18613480-18613869 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 131 |
| Conread position: | 222-602 |
| Cow position: | chr3:31406320-31405939 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 368 |
| Conread position: | 1-239 |
| Cow position: | chr4:57232736-57232500 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 264-613 |
| Cow position: | chr4:57232501-57232156 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 185 |
| Conread position: | 117-496 |
| Cow position: | chr5:57100725-57100351 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 285-415 |
| Cow position: | chr5:57101060-57100929 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 221-557 |
| Cow position: | chr6:41927577-41927253 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 49 |
| Conread position: | 221-598 |
| Cow position: | chr6:54518159-54518546 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 227 |
| Conread position: | 221-548 |
| Cow position: | chr7:14275540-14275213 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-566 |
| Cow position: | chr7:10794798-10795135 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 221-604 |
| Cow position: | chr7:68498758-68498379 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 221-362 |
| Cow position: | chr8:32009702-32009834 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 221-605 |
| Cow position: | chr8:18941821-18942206 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 120 |
| Conread position: | 340-607 |
| Cow position: | chr8:32010610-32010877 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 186 |
| Conread position: | 1-613 |
| Cow position: | chr9:35097014-35097624 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 537 |
| Conread position: | 221-589 |
| Cow position: | chr9:53317135-53316797 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 82 |
| Conread position: | 223-605 |
| Cow position: | chr9:48554205-48553823 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 45 |
| Conread position: | 1-94 |
| Cow position: | chrX:14322645-14322551 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-612 |
| Cow position: | chrX:21811844-21812453 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 568, 537 |
| Conread position: | 82-223 |
| Cow position: | chrX:14322365-14322224 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 132 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-385 |
| Cow position: | chrX:14321700-14321536 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-595 |
| Cow position: | chrX:14321457-14321248 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 154 |