Cow genome map
| Conread name: | mA2-MI-P-A2-afd-g-03-1-UM.s1 |
| Conread position: | 1-468 |
| Cow position: | chr1:8907427-8906980 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 35 |
| Conread position: | 42-356 |
| Cow position: | chr1:53020955-53020645 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 307, 84 |
| Conread position: | 184-505 |
| Cow position: | chr1:160689-160994 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 24 |
| Conread position: | 502-633 |
| Cow position: | chr1:8906742-8906616 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 531-636 |
| Cow position: | chr1:161236-161343 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 569-645 |
| Cow position: | chr1:47480032-47479958 (view UCSC Genome Browser custom track) |
| Alignm length: | 77 |
| Alignm identity: | 74 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 7-571 |
| Cow position: | chr10:14623132-14622577 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 79 |
| Conread position: | 487-646 |
| Cow position: | chr10:40314915-40314759 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 2-633 |
| Cow position: | chr11:67284597-67283971 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 218 |
| Conread position: | 309-642 |
| Cow position: | chr11:19728267-19728604 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 353-564 |
| Cow position: | chr12:30842624-30842834 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 1-221 |
| Cow position: | chr13:35473453-35473673 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-212 |
| Cow position: | chr15:2142169-2142010 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 229-636 |
| Cow position: | chr15:2109183-2109591 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 113 |
| Conread position: | 1-288 |
| Cow position: | chr18:1650864-1650577 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 217 |
| Conread position: | 1-481 |
| Cow position: | chr19:15558568-15559026 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 48 |
| Conread position: | 298-646 |
| Cow position: | chr19:42922990-42922640 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 111 |
| Conread position: | 19-215 |
| Cow position: | chr2:82503673-82503477 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 220-641 |
| Cow position: | chr2:1241707-1242121 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 214 |
| Conread position: | 1-545 |
| Cow position: | chr22:35737021-35737564 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 358-634 |
| Cow position: | chr22:45621442-45621165 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 184 |
| Conread position: | 513-633 |
| Cow position: | chr22:35737557-35737675 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 117 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 400-635 |
| Cow position: | chr23:5423183-5422949 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 7 |
| Conread position: | 346-639 |
| Cow position: | chr24:15448904-15448614 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 118 |
| Conread position: | 417-645 |
| Cow position: | chr24:32145170-32145397 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 115 |
| Conread position: | 21-637 |
| Cow position: | chr27:30549700-30550303 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 20 |
| Conread position: | 166-639 |
| Cow position: | chr27:14706810-14706354 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 32 |
| Conread position: | 510-620 |
| Cow position: | chr28:13881686-13881575 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 1-633 |
| Cow position: | chr3:17722938-17723568 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 560, 219 |
| Conread position: | 2-567 |
| Cow position: | chr3:2885718-2886299 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 82 |
| Conread position: | 218-562 |
| Cow position: | chr3:54640531-54640192 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 137 |
| Conread position: | 349-611 |
| Cow position: | chr4:46919301-46919553 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 24 |
| Conread position: | 1-234 |
| Cow position: | chr5:25252684-25252916 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 34-645 |
| Cow position: | chr5:2002635-2003197 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 27 |
| Conread position: | 111-641 |
| Cow position: | chr5:62310867-62311380 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 8 |
| Conread position: | 229-641 |
| Cow position: | chr5:61090913-61090500 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 35 |
| Conread position: | 489-642 |
| Cow position: | chr6:55004366-55004216 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 137 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 1-252 |
| Cow position: | chr7:63517422-63517173 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-633 |
| Cow position: | chr7:63142886-63142257 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 108 |
| Conread position: | 1-646 |
| Cow position: | chr7:65486839-65486195 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 108 |
| Conread position: | 1-645 |
| Cow position: | chr9:24247706-24247061 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 219 |