Cow genome map
| Conread name: | mE3-MI-P-E3-aal-h-01-1-UM.s1 |
| Conread position: | 135-428 |
| Cow position: | chr1:76254663-76254373 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 135-523 |
| Cow position: | chr1:72158232-72158614 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 22 |
| Conread position: | 186-429 |
| Cow position: | chr1:60822430-60822673 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 395-525 |
| Cow position: | chr1:82396322-82396192 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 78, 89 |
| Conread position: | 1-460 |
| Cow position: | chr10:27289667-27290126 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-263 |
| Cow position: | chr10:22740228-22740356 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-435 |
| Cow position: | chr11:68999110-68999546 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 311 |
| Conread position: | 3-277 |
| Cow position: | chr11:31447148-31447425 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 88 |
| Conread position: | 167-521 |
| Cow position: | chr11:78298416-78298762 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 217 |
| Conread position: | 213-521 |
| Cow position: | chr11:35219310-35219622 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 271 |
| Conread position: | 320-523 |
| Cow position: | chr11:31447908-31448106 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 137-522 |
| Cow position: | chr12:2955517-2955902 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 268 |
| Conread position: | 135-347 |
| Cow position: | chr13:59902924-59902710 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 137-365 |
| Cow position: | chr13:25956967-25957175 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 350-509 |
| Cow position: | chr13:25957236-25957393 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-435 |
| Cow position: | chr15:23806273-23805841 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 134-361 |
| Cow position: | chr15:15051925-15052151 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 135-409 |
| Cow position: | chr15:23458906-23458630 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 134 |
| Conread position: | 367-520 |
| Cow position: | chr15:15052196-15052357 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 1-525 |
| Cow position: | chr16:2455781-2456301 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 472, 257 |
| Conread position: | 135-523 |
| Cow position: | chr17:27703443-27703056 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 346 |
| Conread position: | 1-526 |
| Cow position: | chr18:45583210-45583727 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 406 |
| Conread position: | 135-412 |
| Cow position: | chr18:38987449-38987181 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 1-113 |
| Cow position: | chr19:47779816-47779706 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 134-518 |
| Cow position: | chr19:13447207-13446825 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 74 |
| Conread position: | 135-522 |
| Cow position: | chr19:29683898-29684272 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 137-521 |
| Cow position: | chr19:8517956-8518338 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 216-526 |
| Cow position: | chr19:10101055-10100748 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 216-526 |
| Cow position: | chr19:47779703-47779414 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-526 |
| Cow position: | chr2:43730012-43730486 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 79 |
| Conread position: | 80-526 |
| Cow position: | chr2:19056198-19056644 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 385 |
| Conread position: | 134-524 |
| Cow position: | chr2:61152357-61152732 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 135-524 |
| Cow position: | chr2:50609948-50610335 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 325 |
| Conread position: | 138-521 |
| Cow position: | chr2:67612017-67611622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 280 |
| Conread position: | 135-517 |
| Cow position: | chr21:22836863-22836480 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 203 |
| Conread position: | 1-519 |
| Cow position: | chr23:13842808-13842291 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 130 |
| Conread position: | 135-520 |
| Cow position: | chr24:28022880-28022494 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 273 |
| Conread position: | 135-526 |
| Cow position: | chr24:27083113-27083498 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 225 |
| Conread position: | 186-521 |
| Cow position: | chr24:2664499-2664178 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 67 |
| Conread position: | 135-334 |
| Cow position: | chr26:13267691-13267890 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 322-519 |
| Cow position: | chr26:13268241-13268446 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 134-525 |
| Cow position: | chr27:24299411-24299799 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 48 |
| Conread position: | 134-526 |
| Cow position: | chr27:22541226-22541616 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 48 |
| Conread position: | 1-514 |
| Cow position: | chr28:8130574-8130073 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 28 |
| Conread position: | 115-332 |
| Cow position: | chr29:8900934-8901144 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 337-517 |
| Cow position: | chr29:8901453-8901636 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 135-524 |
| Cow position: | chr3:18613480-18613866 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 136-517 |
| Cow position: | chr3:31406320-31405939 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 368 |
| Conread position: | 1-153 |
| Cow position: | chr4:57232652-57232500 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-525 |
| Cow position: | chr4:57232501-57232159 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 185 |
| Conread position: | 31-410 |
| Cow position: | chr5:57100725-57100351 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 199-329 |
| Cow position: | chr5:57101060-57100929 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 135-471 |
| Cow position: | chr6:41927577-41927253 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 49 |
| Conread position: | 135-513 |
| Cow position: | chr6:54518159-54518546 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 227 |
| Conread position: | 135-462 |
| Cow position: | chr7:14275540-14275213 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-480 |
| Cow position: | chr7:10794798-10795135 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 135-519 |
| Cow position: | chr7:68498758-68498379 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 135-276 |
| Cow position: | chr8:32009702-32009834 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 135-520 |
| Cow position: | chr8:18941821-18942206 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 120 |
| Conread position: | 254-522 |
| Cow position: | chr8:32010610-32010877 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 186 |
| Conread position: | 1-526 |
| Cow position: | chr9:35097100-35097622 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 0 |
| Conread position: | 135-504 |
| Cow position: | chr9:53317135-53316797 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 137-520 |
| Cow position: | chr9:48554205-48553823 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 45 |
| Conread position: | 1-137 |
| Cow position: | chrX:14322360-14322224 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 127 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-526 |
| Cow position: | chrX:21811930-21812452 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 451 |
| Conread position: | 135-299 |
| Cow position: | chrX:14321700-14321536 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-510 |
| Cow position: | chrX:14321457-14321248 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 154 |