• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
mE4-MI-P-E4-ahe-h-07-1-UM.s1
        

               
Conread position:
               
4-391
               

               
Cow position:
               
chr1:43003920-43004302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
17-434
               

               
Cow position:
               
chr1:44522018-44522437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
33-409
               

               
Cow position:
               
chr1:77573526-77573148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
197, 155
               

               
Conread position:
               
38-510
               

               
Cow position:
               
chr1:37556413-37555945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
39-390
               

               
Cow position:
               
chr1:83105807-83105454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chr1:51643254-51642894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
39-485
               

               
Cow position:
               
chr1:15458486-15458042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 164
               

               
Conread position:
               
39-488
               

               
Cow position:
               
chr1:4337738-4337292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
39-501
               

               
Cow position:
               
chr1:77620267-77619808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
39-520
               

               
Cow position:
               
chr1:40618369-40617910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr1:79099891-79100361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 160
               

               
Conread position:
               
39-546
               

               
Cow position:
               
chr1:81292071-81291558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
39-557
               

               
Cow position:
               
chr1:87472724-87473252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 139
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr1:22011981-22012497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr1:68601648-68602164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
39-559
               

               
Cow position:
               
chr1:73760216-73760727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 6
               

               
Conread position:
               
40-350
               

               
Cow position:
               
chr1:6519819-6519516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 162
               

               
Conread position:
               
44-542
               

               
Cow position:
               
chr1:20046194-20045684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
45-290
               

               
Cow position:
               
chr1:71346760-71347004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
51-364
               

               
Cow position:
               
chr1:26572474-26572786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
51-365
               

               
Cow position:
               
chr1:73914305-73914618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
51-514
               

               
Cow position:
               
chr1:16849476-16849019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 149
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr1:68239680-68239999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 143
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr1:71599364-71599831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 89
               

               
Conread position:
               
59-354
               

               
Cow position:
               
chr1:31969107-31969398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
171, 21
               

               
Conread position:
               
59-364
               

               
Cow position:
               
chr1:37573464-37573158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
59-453
               

               
Cow position:
               
chr1:85715560-85715954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
171, 39
               

               
Conread position:
               
59-488
               

               
Cow position:
               
chr1:33498453-33498885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
168, 129
               

               
Conread position:
               
59-537
               

               
Cow position:
               
chr1:35731849-35732328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 142
               

               
Conread position:
               
59-540
               

               
Cow position:
               
chr1:56772188-56772676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
59-552
               

               
Cow position:
               
chr1:43221114-43221588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
141, 27
               

               
Conread position:
               
64-507
               

               
Cow position:
               
chr1:56080776-56081234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 139
               

               
Conread position:
               
65-310
               

               
Cow position:
               
chr1:31271856-31272097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
165, 16
               

               
Conread position:
               
71-503
               

               
Cow position:
               
chr1:41277213-41277644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 135
               

               
Conread position:
               
71-535
               

               
Cow position:
               
chr1:36529118-36528655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 9
               

               
Conread position:
               
78-457
               

               
Cow position:
               
chr1:44824949-44824572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 198
               

               
Conread position:
               
78-547
               

               
Cow position:
               
chr1:22516231-22515764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
83-371
               

               
Cow position:
               
chr1:78300149-78300434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
150, 118
               

               
Conread position:
               
83-557
               

               
Cow position:
               
chr1:31158639-31159114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
183, 170
               

               
Conread position:
               
89-537
               

               
Cow position:
               
chr1:92663211-92663649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 74
               

               
Conread position:
               
101-373
               

               
Cow position:
               
chr1:19437429-19437699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 107
               

               
Conread position:
               
110-482
               

               
Cow position:
               
chr1:50910646-50911026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
120, 89
               

               
Conread position:
               
116-507
               

               
Cow position:
               
chr1:102560404-102560018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
113, 83
               

               
Conread position:
               
135-535
               

               
Cow position:
               
chr1:28811351-28811755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 73
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr10:54890767-54891019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
3-499
               

               
Cow position:
               
chr10:27173679-27174173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 200
               

               
Conread position:
               
4-651
               

               
Cow position:
               
chr10:23542783-23543446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
17-534
               

               
Cow position:
               
chr10:51213612-51213109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
38-538
               

               
Cow position:
               
chr10:30547959-30548446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 163
               

               
Conread position:
               
39-207
               

               
Cow position:
               
chr10:66745992-66746160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 146
               

               
Conread position:
               
39-508
               

               
Cow position:
               
chr10:34663773-34664240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
39-514
               

               
Cow position:
               
chr10:25923097-25922624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
39-518
               

               
Cow position:
               
chr10:26588849-26588374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
39-533
               

               
Cow position:
               
chr10:59274536-59274041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 175
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr10:65810162-65810655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr10:10859540-10860035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
39-545
               

               
Cow position:
               
chr10:28718322-28717821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
39-546
               

               
Cow position:
               
chr10:33344561-33344051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
39-552
               

               
Cow position:
               
chr10:6349004-6348501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr10:2738197-2737673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
25, 156
               

               
Conread position:
               
40-558
               

               
Cow position:
               
chr10:277353-277867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
40-558
               

               
Cow position:
               
chr10:23413046-23412537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
41-504
               

               
Cow position:
               
chr10:56736401-56735957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
51-537
               

               
Cow position:
               
chr10:8517943-8518418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
51-540
               

               
Cow position:
               
chr10:42430513-42431003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
59-477
               

               
Cow position:
               
chr10:47700039-47699635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
207, 101
               

               
Conread position:
               
59-539
               

               
Cow position:
               
chr10:18389472-18389943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
62-474
               

               
Cow position:
               
chr10:50961935-50961522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
63-284
               

               
Cow position:
               
chr10:46256124-46255907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
63-480
               

               
Cow position:
               
chr10:2187892-2188302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
203, 56
               

               
Conread position:
               
63-544
               

               
Cow position:
               
chr10:31047787-31047325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
66-551
               

               
Cow position:
               
chr10:7501192-7500718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 136
               

               
Conread position:
               
66-557
               

               
Cow position:
               
chr10:24337008-24336541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
161, 136
               

               
Conread position:
               
88-507
               

               
Cow position:
               
chr10:53210708-53211122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
89-557
               

               
Cow position:
               
chr10:14902262-14901797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
90-469
               

               
Cow position:
               
chr10:53204127-53203750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 131
               

               
Conread position:
               
101-428
               

               
Cow position:
               
chr10:63850266-63849951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
65, 60
               

               
Conread position:
               
111-551
               

               
Cow position:
               
chr10:20125281-20124848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 89
               

               
Conread position:
               
119-538
               

               
Cow position:
               
chr10:54159706-54159297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
122, 142
               

               
Conread position:
               
119-543
               

               
Cow position:
               
chr10:61882580-61882158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 89
               

               
Conread position:
               
120-491
               

               
Cow position:
               
chr10:50980962-50980596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
121-551
               

               
Cow position:
               
chr10:53794160-53794577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
107, 80
               

               
Conread position:
               
163-496
               

               
Cow position:
               
chr10:31182293-31182629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
525-668
               

               
Cow position:
               
chr10:54891649-54891789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 73
               

               
Conread position:
               
33-320
               

               
Cow position:
               
chr11:17273015-17273303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 130
               

               
Conread position:
               
38-480
               

               
Cow position:
               
chr11:2346404-2345963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
38-538
               

               
Cow position:
               
chr11:76969581-76970075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
39-260
               

               
Cow position:
               
chr11:10154614-10154833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
39-309
               

               
Cow position:
               
chr11:79098329-79098597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
39-335
               

               
Cow position:
               
chr11:35630395-35630100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 23
               

               
Conread position:
               
39-479
               

               
Cow position:
               
chr11:66259157-66258724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
39-501
               

               
Cow position:
               
chr11:15988941-15988483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-509
               

               
Cow position:
               
chr11:62827125-62827587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
194, 160
               

               
Conread position:
               
39-513
               

               
Cow position:
               
chr11:9388979-9388511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
39-530
               

               
Cow position:
               
chr11:52248520-52248038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 168
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr11:22617301-22617794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
57-367
               

               
Cow position:
               
chr11:59948505-59948799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
209, 23
               

               
Conread position:
               
59-512
               

               
Cow position:
               
chr11:35240749-35240299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
59-531
               

               
Cow position:
               
chr11:9299143-9299625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 153
               

               
Conread position:
               
59-536
               

               
Cow position:
               
chr11:68276602-68276123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
132, 142
               

               
Conread position:
               
59-538
               

               
Cow position:
               
chr11:19440641-19441113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
171, 94
               

               
Conread position:
               
61-482
               

               
Cow position:
               
chr11:72551485-72551896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
148, 176
               

               
Conread position:
               
62-427
               

               
Cow position:
               
chr11:82558997-82558628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 197
               

               
Conread position:
               
63-504
               

               
Cow position:
               
chr11:37727700-37727271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
70-466
               

               
Cow position:
               
chr11:29622783-29623174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
160, 131
               

               
Conread position:
               
71-419
               

               
Cow position:
               
chr11:60004436-60004088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
292, 54
               

               
Conread position:
               
78-309
               

               
Cow position:
               
chr11:40643179-40642951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
83-480
               

               
Cow position:
               
chr11:56751729-56752121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
88-337
               

               
Cow position:
               
chr11:36257315-36257564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
142, 214
               

               
Conread position:
               
88-535
               

               
Cow position:
               
chr11:56418917-56419379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
128, 166
               

               
Conread position:
               
89-538
               

               
Cow position:
               
chr11:44107265-44106831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
98-481
               

               
Cow position:
               
chr11:11378890-11378508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
129, 55
               

               
Conread position:
               
139-478
               

               
Cow position:
               
chr11:9314285-9314624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
139-478
               

               
Cow position:
               
chr11:11450041-11450380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
246-625
               

               
Cow position:
               
chr11:6240022-6240407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
38-491
               

               
Cow position:
               
chr12:3050282-3050731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr12:464682-465198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
59-537
               

               
Cow position:
               
chr12:12877005-12877479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
252, 187
               

               
Conread position:
               
63-475
               

               
Cow position:
               
chr12:35769571-35769169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
381, 17
               

               
Conread position:
               
74-453
               

               
Cow position:
               
chr12:32067262-32066886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 76
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr12:4190765-4190339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
126, 116
               

               
Conread position:
               
86-285
               

               
Cow position:
               
chr12:43265746-43265542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
114, 176
               

               
Conread position:
               
86-487
               

               
Cow position:
               
chr12:1238969-1239359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
312, 116
               

               
Conread position:
               
102-557
               

               
Cow position:
               
chr12:34659276-34659734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
127, 162
               

               
Conread position:
               
38-274
               

               
Cow position:
               
chr13:26633403-26633166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 164
               

               
Conread position:
               
38-306
               

               
Cow position:
               
chr13:35766699-35766432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
38-542
               

               
Cow position:
               
chr13:21656909-21657406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
190, 21
               

               
Conread position:
               
39-442
               

               
Cow position:
               
chr13:32550461-32550065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
39-557
               

               
Cow position:
               
chr13:34094202-34094708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr13:30468398-30468914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
46-290
               

               
Cow position:
               
chr13:56717737-56717499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 151
               

               
Conread position:
               
58-266
               

               
Cow position:
               
chr13:3150038-3150243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
58-554
               

               
Cow position:
               
chr13:12288693-12289173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 58
               

               
Conread position:
               
59-516
               

               
Cow position:
               
chr13:10391570-10392021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 104
               

               
Conread position:
               
60-546
               

               
Cow position:
               
chr13:44462289-44462767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
105, 80
               

               
Conread position:
               
63-403
               

               
Cow position:
               
chr13:41279625-41279286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 194
               

               
Conread position:
               
63-556
               

               
Cow position:
               
chr13:39629349-39629830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
332, 138
               

               
Conread position:
               
66-509
               

               
Cow position:
               
chr13:48660118-48659672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
73-562
               

               
Cow position:
               
chr13:3184741-3184241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
86-442
               

               
Cow position:
               
chr13:58217590-58217933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
151, 83
               

               
Conread position:
               
88-556
               

               
Cow position:
               
chr13:43117279-43117754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
113-507
               

               
Cow position:
               
chr13:39693629-39693241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 150
               

               
Conread position:
               
114-557
               

               
Cow position:
               
chr13:35695859-35695416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 84
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr13:2725206-2725603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
34-373
               

               
Cow position:
               
chr14:33580964-33581306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
38-535
               

               
Cow position:
               
chr14:33280938-33281434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 172
               

               
Conread position:
               
38-557
               

               
Cow position:
               
chr14:24966038-24966559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr14:13931896-13932192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 168
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr14:13582443-13581963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr14:28257254-28256762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
39-543
               

               
Cow position:
               
chr14:13837133-13836639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
39-551
               

               
Cow position:
               
chr14:21919656-21920156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr14:20786971-20786456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr14:27039801-27040312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
41-543
               

               
Cow position:
               
chr14:31946378-31946873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
18, 168
               

               
Conread position:
               
63-520
               

               
Cow position:
               
chr14:17766852-17767294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
165, 23
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr14:18108126-18107716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
242, 124
               

               
Conread position:
               
30-390
               

               
Cow position:
               
chr15:9046518-9046158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
170, 164
               

               
Conread position:
               
33-461
               

               
Cow position:
               
chr15:26880841-26881278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
39-287
               

               
Cow position:
               
chr15:9038314-9038562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
39-355
               

               
Cow position:
               
chr15:11684971-11684655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
179, 94
               

               
Conread position:
               
39-390
               

               
Cow position:
               
chr15:25660633-25660982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
20, 224
               

               
Conread position:
               
39-487
               

               
Cow position:
               
chr15:23529008-23529457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
39-528
               

               
Cow position:
               
chr15:12962736-12963220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
20, 131
               

               
Conread position:
               
39-534
               

               
Cow position:
               
chr15:37714674-37714190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 155
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr15:3007248-3007740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
39-543
               

               
Cow position:
               
chr15:3913883-3913396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 160
               

               
Conread position:
               
40-538
               

               
Cow position:
               
chr15:20352215-20352707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
45-552
               

               
Cow position:
               
chr15:19517595-19518092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
67-443
               

               
Cow position:
               
chr15:11612718-11612347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
166, 132
               

               
Conread position:
               
79-537
               

               
Cow position:
               
chr15:19655568-19655119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
154, 104
               

               
Conread position:
               
83-487
               

               
Cow position:
               
chr15:22138533-22138934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
62, 71
               

               
Conread position:
               
86-537
               

               
Cow position:
               
chr15:34363897-34364353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
88-514
               

               
Cow position:
               
chr15:40645144-40645575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
121-524
               

               
Cow position:
               
chr15:47044795-47044389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
112, 80
               

               
Conread position:
               
133-537
               

               
Cow position:
               
chr15:29642724-29643108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 69
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr15:11595907-11596304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
21-429
               

               
Cow position:
               
chr16:34209618-34209216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
38-535
               

               
Cow position:
               
chr16:15045450-15045947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 246
               

               
Conread position:
               
39-308
               

               
Cow position:
               
chr16:26682848-26682584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 78
               

               
Conread position:
               
39-441
               

               
Cow position:
               
chr16:29979169-29979573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
39-496
               

               
Cow position:
               
chr16:30695300-30695757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
39-512
               

               
Cow position:
               
chr16:20734033-20734503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
39-517
               

               
Cow position:
               
chr16:30582119-30582599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 175
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr16:29106901-29107391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
40-483
               

               
Cow position:
               
chr16:37055839-37056265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
55-220
               

               
Cow position:
               
chr16:32742461-32742301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
59-470
               

               
Cow position:
               
chr16:12988363-12988775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
209, 66
               

               
Conread position:
               
59-483
               

               
Cow position:
               
chr16:30053164-30052739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
59-540
               

               
Cow position:
               
chr16:24904278-24904752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
207, 59
               

               
Conread position:
               
63-386
               

               
Cow position:
               
chr16:45236192-45235872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
303, 72
               

               
Conread position:
               
68-606
               

               
Cow position:
               
chr16:44569398-44569924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
162, 97
               

               
Conread position:
               
78-558
               

               
Cow position:
               
chr16:14040631-14040155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
101-477
               

               
Cow position:
               
chr16:51381404-51381783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
110, 90
               

               
Conread position:
               
108-524
               

               
Cow position:
               
chr16:53761921-53761517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
121-540
               

               
Cow position:
               
chr16:19067653-19067241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
145, 105
               

               
Conread position:
               
157-529
               

               
Cow position:
               
chr16:16177421-16177047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
206, 120
               

               
Conread position:
               
38-424
               

               
Cow position:
               
chr17:2143116-2142728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
38-538
               

               
Cow position:
               
chr17:45457-45956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
39-378
               

               
Cow position:
               
chr17:29663725-29663387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
39-390
               

               
Cow position:
               
chr17:29109754-29110111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
39-404
               

               
Cow position:
               
chr17:3490552-3490186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
39-501
               

               
Cow position:
               
chr17:22248447-22248905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
39-518
               

               
Cow position:
               
chr17:41704153-41704631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr17:184952-184460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr17:2265994-2265499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
39-543
               

               
Cow position:
               
chr17:24310003-24309502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr17:21666805-21666289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
46-543
               

               
Cow position:
               
chr17:41113250-41113743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 72
               

               
Conread position:
               
51-482
               

               
Cow position:
               
chr17:44331031-44330605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
51-500
               

               
Cow position:
               
chr17:31948745-31949194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
8, 151
               

               
Conread position:
               
53-508
               

               
Cow position:
               
chr17:37019135-37018683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 157
               

               
Conread position:
               
53-530
               

               
Cow position:
               
chr17:35547548-35548007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
145, 55
               

               
Conread position:
               
71-543
               

               
Cow position:
               
chr17:18840601-18841076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
129, 9
               

               
Conread position:
               
72-512
               

               
Cow position:
               
chr17:38364995-38364553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
74-390
               

               
Cow position:
               
chr17:35998387-35998706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 206
               

               
Conread position:
               
83-457
               

               
Cow position:
               
chr17:33713371-33713002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
86-537
               

               
Cow position:
               
chr17:14260067-14260506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
144, 56
               

               
Conread position:
               
86-543
               

               
Cow position:
               
chr17:12631132-12631563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
321, 108
               

               
Conread position:
               
103-390
               

               
Cow position:
               
chr17:23278172-23278451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
111-551
               

               
Cow position:
               
chr17:13849935-13849506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
256, 109
               

               
Conread position:
               
157-558
               

               
Cow position:
               
chr17:11083447-11083845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
208, 122
               

               
Conread position:
               
37-514
               

               
Cow position:
               
chr18:18493925-18494408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr18:53018988-53019285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
39-350
               

               
Cow position:
               
chr18:36414656-36414348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 167
               

               
Conread position:
               
39-359
               

               
Cow position:
               
chr18:42757414-42757104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
39-430
               

               
Cow position:
               
chr18:158591-158974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
39-490
               

               
Cow position:
               
chr18:28931989-28931553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
188, 44
               

               
Conread position:
               
39-491
               

               
Cow position:
               
chr18:7085579-7085127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
39-536
               

               
Cow position:
               
chr18:42362788-42362298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 142
               

               
Conread position:
               
39-551
               

               
Cow position:
               
chr18:51331858-51331356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr18:35443348-35443864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
41-361
               

               
Cow position:
               
chr18:20755146-20755463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
51-535
               

               
Cow position:
               
chr18:12683776-12684238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
53-480
               

               
Cow position:
               
chr18:18248130-18247699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 191
               

               
Conread position:
               
58-557
               

               
Cow position:
               
chr18:51031711-51032204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 150
               

               
Conread position:
               
59-531
               

               
Cow position:
               
chr18:2616450-2616915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
63-534
               

               
Cow position:
               
chr18:34210211-34210681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
269, 215
               

               
Conread position:
               
67-554
               

               
Cow position:
               
chr18:36785326-36784861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 81
               

               
Conread position:
               
74-388
               

               
Cow position:
               
chr18:6424643-6424959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 134
               

               
Conread position:
               
78-542
               

               
Cow position:
               
chr18:43638391-43637919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 58
               

               
Conread position:
               
86-542
               

               
Cow position:
               
chr18:40840335-40840792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 175
               

               
Conread position:
               
87-535
               

               
Cow position:
               
chr18:3229730-3229289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
179, 119
               

               
Conread position:
               
96-483
               

               
Cow position:
               
chr18:38086897-38087282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
134, 29
               

               
Conread position:
               
102-535
               

               
Cow position:
               
chr18:13907116-13907530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 96
               

               
Conread position:
               
133-501
               

               
Cow position:
               
chr18:26642578-26642204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
144-438
               

               
Cow position:
               
chr18:268468-268762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
10-397
               

               
Cow position:
               
chr19:39645028-39644637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 190
               

               
Conread position:
               
14-482
               

               
Cow position:
               
chr19:29627639-29628112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
214, 185
               

               
Conread position:
               
39-389
               

               
Cow position:
               
chr19:17732696-17732345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 160
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chr19:7127037-7126679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
20, 163
               

               
Conread position:
               
39-471
               

               
Cow position:
               
chr19:44035680-44035236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
39-473
               

               
Cow position:
               
chr19:44144202-44144636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
39-483
               

               
Cow position:
               
chr19:12698030-12697590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
39-552
               

               
Cow position:
               
chr19:39884022-39884541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 216
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr19:54541958-54542474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
40-439
               

               
Cow position:
               
chr19:13066724-13066328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 164
               

               
Conread position:
               
40-534
               

               
Cow position:
               
chr19:22859806-22860311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
41-445
               

               
Cow position:
               
chr19:35538683-35539084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
161, 18
               

               
Conread position:
               
41-538
               

               
Cow position:
               
chr19:42240590-42241084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
44-538
               

               
Cow position:
               
chr19:2480807-2481300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 158
               

               
Conread position:
               
48-289
               

               
Cow position:
               
chr19:2311687-2311440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 162
               

               
Conread position:
               
59-298
               

               
Cow position:
               
chr19:28830750-28830986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
170, 42
               

               
Conread position:
               
59-309
               

               
Cow position:
               
chr19:47128084-47127830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
135, 76
               

               
Conread position:
               
59-339
               

               
Cow position:
               
chr19:22013382-22013106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
169, 142
               

               
Conread position:
               
59-429
               

               
Cow position:
               
chr19:7446235-7445867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
194, 49
               

               
Conread position:
               
59-480
               

               
Cow position:
               
chr19:28938099-28938520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 202
               

               
Conread position:
               
59-510
               

               
Cow position:
               
chr19:15253027-15252580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
235, 73
               

               
Conread position:
               
61-544
               

               
Cow position:
               
chr19:18719354-18718872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
169, 127
               

               
Conread position:
               
63-538
               

               
Cow position:
               
chr19:5638464-5638927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
170, 139
               

               
Conread position:
               
64-481
               

               
Cow position:
               
chr19:38735823-38735400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 219
               

               
Conread position:
               
78-504
               

               
Cow position:
               
chr19:21201246-21200828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
188, 177
               

               
Conread position:
               
89-538
               

               
Cow position:
               
chr19:30456548-30456113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 22
               

               
Conread position:
               
137-558
               

               
Cow position:
               
chr19:24735079-24734656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
3-364
               

               
Cow position:
               
chr2:72244476-72244833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 199
               

               
Conread position:
               
9-501
               

               
Cow position:
               
chr2:82644464-82643972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
169, 123
               

               
Conread position:
               
17-667
               

               
Cow position:
               
chr2:31394572-31393934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 162
               

               
Conread position:
               
33-538
               

               
Cow position:
               
chr2:38494587-38495092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 226
               

               
Conread position:
               
37-552
               

               
Cow position:
               
chr2:26113299-26113816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
193, 133
               

               
Conread position:
               
38-540
               

               
Cow position:
               
chr2:23087956-23088442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
39-226
               

               
Cow position:
               
chr2:6148847-6148662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 164
               

               
Conread position:
               
39-479
               

               
Cow position:
               
chr2:53433250-53432798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 6
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr2:16723872-16723382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 159
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr2:25979575-25979083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
39-536
               

               
Cow position:
               
chr2:51493274-51493759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 166
               

               
Conread position:
               
39-537
               

               
Cow position:
               
chr2:34685372-34685868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
20, 193
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr2:4399652-4400168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr2:11152512-11153018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
41-558
               

               
Cow position:
               
chr2:24875726-24876240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
51-350
               

               
Cow position:
               
chr2:14459968-14460265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
59-506
               

               
Cow position:
               
chr2:12484285-12484725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 173
               

               
Conread position:
               
59-507
               

               
Cow position:
               
chr2:69294549-69294112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
174, 35
               

               
Conread position:
               
59-537
               

               
Cow position:
               
chr2:64221729-64222207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
60-557
               

               
Cow position:
               
chr2:51835252-51835755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 142
               

               
Conread position:
               
65-385
               

               
Cow position:
               
chr2:24632190-24632504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 46
               

               
Conread position:
               
65-554
               

               
Cow position:
               
chr2:49197206-49197685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
66-500
               

               
Cow position:
               
chr2:64505496-64505932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
71, 192
               

               
Conread position:
               
67-471
               

               
Cow position:
               
chr2:29756963-29757363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
166, 41
               

               
Conread position:
               
78-535
               

               
Cow position:
               
chr2:12694232-12694687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
82-540
               

               
Cow position:
               
chr2:20553938-20554398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
83-482
               

               
Cow position:
               
chr2:2590271-2590667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
83-557
               

               
Cow position:
               
chr2:80440174-80439696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 119
               

               
Conread position:
               
113-472
               

               
Cow position:
               
chr2:80588073-80587714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
101, 84
               

               
Conread position:
               
143-501
               

               
Cow position:
               
chr2:14806721-14807079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
39-497
               

               
Cow position:
               
chr20:3135665-3135221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 164
               

               
Conread position:
               
39-514
               

               
Cow position:
               
chr20:7288368-7287897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
25, 167
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr20:22060180-22060672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
20, 102
               

               
Conread position:
               
40-499
               

               
Cow position:
               
chr20:2001607-2002052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
41-471
               

               
Cow position:
               
chr20:27565776-27565352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 107
               

               
Conread position:
               
59-390
               

               
Cow position:
               
chr20:24492973-24493300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
228, 142
               

               
Conread position:
               
59-483
               

               
Cow position:
               
chr20:15280477-15280041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
171, 66
               

               
Conread position:
               
78-427
               

               
Cow position:
               
chr20:6598823-6599163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
149, 30
               

               
Conread position:
               
111-551
               

               
Cow position:
               
chr20:8654073-8653639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
122-620
               

               
Cow position:
               
chr20:30145555-30145065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
155, 84
               

               
Conread position:
               
3-561
               

               
Cow position:
               
chr21:2290190-2289637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
24-390
               

               
Cow position:
               
chr21:16117970-16118338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
32-557
               

               
Cow position:
               
chr21:36701170-36701689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
38-393
               

               
Cow position:
               
chr21:16333768-16333411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
38-496
               

               
Cow position:
               
chr21:10436948-10436504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
38-510
               

               
Cow position:
               
chr21:6623927-6623459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
38-543
               

               
Cow position:
               
chr21:12802002-12802502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
39-368
               

               
Cow position:
               
chr21:9988034-9988361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
39-383
               

               
Cow position:
               
chr21:1735985-1736328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr21:20588809-20588318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
39-552
               

               
Cow position:
               
chr21:10093914-10093407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
41-494
               

               
Cow position:
               
chr21:47750689-47750243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
51-530
               

               
Cow position:
               
chr21:26564047-26564507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
52-260
               

               
Cow position:
               
chr21:42455443-42455234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 141
               

               
Conread position:
               
58-535
               

               
Cow position:
               
chr21:431397-431868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 27
               

               
Conread position:
               
62-451
               

               
Cow position:
               
chr21:33653558-33653169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
167, 99
               

               
Conread position:
               
71-543
               

               
Cow position:
               
chr21:46241450-46241914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
73-383
               

               
Cow position:
               
chr21:3166060-3165742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 80
               

               
Conread position:
               
78-500
               

               
Cow position:
               
chr21:18289401-18288983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
120, 49
               

               
Conread position:
               
137-535
               

               
Cow position:
               
chr21:39469750-39470149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
143-500
               

               
Cow position:
               
chr21:15545684-15546041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
157-558
               

               
Cow position:
               
chr21:33257552-33257148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
33-473
               

               
Cow position:
               
chr22:41353359-41353798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
13, 162
               

               
Conread position:
               
38-487
               

               
Cow position:
               
chr22:18550359-18550807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chr22:25987797-25987438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 194
               

               
Conread position:
               
39-429
               

               
Cow position:
               
chr22:42820392-42819995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 167
               

               
Conread position:
               
39-551
               

               
Cow position:
               
chr22:23104666-23105182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
39-552
               

               
Cow position:
               
chr22:13264366-13264868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
39-557
               

               
Cow position:
               
chr22:6948186-6947675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
40-552
               

               
Cow position:
               
chr22:9932856-9933370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
59-538
               

               
Cow position:
               
chr22:23006371-23006847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
59-540
               

               
Cow position:
               
chr22:20931695-20931215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
171, 143
               

               
Conread position:
               
88-512
               

               
Cow position:
               
chr22:30065440-30065872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
145, 113
               

               
Conread position:
               
113-479
               

               
Cow position:
               
chr22:11252228-11251872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 82
               

               
Conread position:
               
119-536
               

               
Cow position:
               
chr22:42722705-42723113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
322, 160
               

               
Conread position:
               
39-197
               

               
Cow position:
               
chr23:3125853-3125694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
39-255
               

               
Cow position:
               
chr23:27644997-27645213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
192, 167
               

               
Conread position:
               
39-441
               

               
Cow position:
               
chr23:22804440-22804047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
39-488
               

               
Cow position:
               
chr23:28743634-28743190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
39-489
               

               
Cow position:
               
chr23:17064692-17065142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 163
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr23:2721646-2721154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
59-540
               

               
Cow position:
               
chr23:34078060-34078532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
117, 144
               

               
Conread position:
               
60-421
               

               
Cow position:
               
chr23:14633173-14633533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
173, 131
               

               
Conread position:
               
66-500
               

               
Cow position:
               
chr23:13410247-13409822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
175, 86
               

               
Conread position:
               
71-535
               

               
Cow position:
               
chr23:36605163-36604711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
73-479
               

               
Cow position:
               
chr23:16280551-16280944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr23:13540187-13539888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
117, 125
               

               
Conread position:
               
84-507
               

               
Cow position:
               
chr23:16237686-16238116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
80, 126
               

               
Conread position:
               
89-506
               

               
Cow position:
               
chr23:36055676-36056083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
141, 111
               

               
Conread position:
               
101-413
               

               
Cow position:
               
chr23:37128394-37128700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
109-533
               

               
Cow position:
               
chr23:7180325-7180750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
131, 89
               

               
Conread position:
               
132-558
               

               
Cow position:
               
chr23:14215394-14215822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
135-551
               

               
Cow position:
               
chr23:10956107-10955682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
121, 72
               

               
Conread position:
               
163-552
               

               
Cow position:
               
chr23:39784566-39784175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
19-538
               

               
Cow position:
               
chr24:13000098-13000616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
38-513
               

               
Cow position:
               
chr24:36027493-36027965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
39-362
               

               
Cow position:
               
chr24:20120364-20120688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
39-421
               

               
Cow position:
               
chr24:28494764-28494386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr24:5539504-5539014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
39-537
               

               
Cow position:
               
chr24:19711658-19711154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr24:21555709-21555212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
77, 93
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr24:6413496-6412983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
20, 72
               

               
Conread position:
               
40-441
               

               
Cow position:
               
chr24:16171659-16171274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
40-534
               

               
Cow position:
               
chr24:29369570-29370070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 162
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr24:34197509-34197272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
184, 160
               

               
Conread position:
               
42-404
               

               
Cow position:
               
chr24:37962011-37961636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
53-406
               

               
Cow position:
               
chr24:26901926-26901571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 260
               

               
Conread position:
               
58-390
               

               
Cow position:
               
chr24:40221761-40221435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
172, 5
               

               
Conread position:
               
59-558
               

               
Cow position:
               
chr24:16537047-16537535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 139
               

               
Conread position:
               
66-390
               

               
Cow position:
               
chr24:40693092-40692775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
83-414
               

               
Cow position:
               
chr24:20262771-20262449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
183, 55
               

               
Conread position:
               
83-424
               

               
Cow position:
               
chr24:11957031-11957366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
117, 125
               

               
Conread position:
               
83-500
               

               
Cow position:
               
chr24:6160439-6160849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
39-489
               

               
Cow position:
               
chr25:22935775-22935341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
405, 27
               

               
Conread position:
               
39-491
               

               
Cow position:
               
chr25:21565022-21565471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 167
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr25:30412227-30412738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
39-540
               

               
Cow position:
               
chr25:40429527-40430027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
39-551
               

               
Cow position:
               
chr25:27199664-27199155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
40-538
               

               
Cow position:
               
chr25:29312596-29313100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
57-549
               

               
Cow position:
               
chr25:30636049-30636530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
61-530
               

               
Cow position:
               
chr25:16870617-16871082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
71-496
               

               
Cow position:
               
chr25:33205921-33206345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
83-385
               

               
Cow position:
               
chr25:21277795-21277500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
147, 109
               

               
Conread position:
               
83-558
               

               
Cow position:
               
chr25:18189706-18190176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
182, 49
               

               
Conread position:
               
121-510
               

               
Cow position:
               
chr25:36564218-36564606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
121-538
               

               
Cow position:
               
chr25:1024803-1025230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
108, 72
               

               
Conread position:
               
11-540
               

               
Cow position:
               
chr26:30757472-30758008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
38-539
               

               
Cow position:
               
chr26:32982659-32983160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
39-335
               

               
Cow position:
               
chr26:13546076-13546365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
39-400
               

               
Cow position:
               
chr26:14184368-14184010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr26:7951263-7950874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr26:16853356-16853855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
39-537
               

               
Cow position:
               
chr26:11363467-11362974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
39-554
               

               
Cow position:
               
chr26:35424473-35423957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr26:34265938-34265422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
51-496
               

               
Cow position:
               
chr26:584889-585327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
59-264
               

               
Cow position:
               
chr26:25966340-25966137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
171, 140
               

               
Conread position:
               
59-506
               

               
Cow position:
               
chr26:23192599-23193055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
59-557
               

               
Cow position:
               
chr26:34606041-34606536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
60-533
               

               
Cow position:
               
chr26:35074109-35073642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
206, 34
               

               
Conread position:
               
66-463
               

               
Cow position:
               
chr26:15088217-15088616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 71
               

               
Conread position:
               
83-531
               

               
Cow position:
               
chr26:24595315-24594872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
282, 115
               

               
Conread position:
               
84-403
               

               
Cow position:
               
chr26:14170034-14170351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 125
               

               
Conread position:
               
95-461
               

               
Cow position:
               
chr26:21638899-21639267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
239, 21
               

               
Conread position:
               
133-535
               

               
Cow position:
               
chr26:29488970-29488571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
6, 70
               

               
Conread position:
               
39-394
               

               
Cow position:
               
chr27:3988852-3989202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
40-539
               

               
Cow position:
               
chr27:21259647-21260140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
63-534
               

               
Cow position:
               
chr27:12018421-12018887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 145
               

               
Conread position:
               
84-535
               

               
Cow position:
               
chr27:30783804-30783339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
100-526
               

               
Cow position:
               
chr27:16117292-16117715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
133, 102
               

               
Conread position:
               
143-514
               

               
Cow position:
               
chr27:12751359-12750988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
144-558
               

               
Cow position:
               
chr27:27292220-27291806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
33-217
               

               
Cow position:
               
chr28:409254-409435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
33-505
               

               
Cow position:
               
chr28:26983925-26984406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
39-309
               

               
Cow position:
               
chr28:27723895-27723626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 119
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chr28:3845523-3845148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 186
               

               
Conread position:
               
39-537
               

               
Cow position:
               
chr28:8959215-8958718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr28:24318063-24318553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 171
               

               
Conread position:
               
39-540
               

               
Cow position:
               
chr28:1550820-1550318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
39-544
               

               
Cow position:
               
chr28:4580424-4580922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr28:29222312-29222826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 102
               

               
Conread position:
               
41-508
               

               
Cow position:
               
chr28:617046-616574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
51-483
               

               
Cow position:
               
chr28:28599152-28598722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
151, 157
               

               
Conread position:
               
59-551
               

               
Cow position:
               
chr28:22411912-22412405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
78-500
               

               
Cow position:
               
chr28:28340977-28340557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
104-481
               

               
Cow position:
               
chr28:24015497-24015124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
87, 92
               

               
Conread position:
               
137-421
               

               
Cow position:
               
chr28:34579776-34580061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
137-535
               

               
Cow position:
               
chr28:34581471-34581871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
34-537
               

               
Cow position:
               
chr29:12450036-12449543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 163
               

               
Conread position:
               
38-390
               

               
Cow position:
               
chr29:23980674-23980326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
39-530
               

               
Cow position:
               
chr29:13093844-13093358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
40-337
               

               
Cow position:
               
chr29:14388593-14388886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
41-517
               

               
Cow position:
               
chr29:6437892-6437428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 69
               

               
Conread position:
               
44-388
               

               
Cow position:
               
chr29:9641862-9641524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
58-528
               

               
Cow position:
               
chr29:18961108-18960638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 98
               

               
Conread position:
               
59-489
               

               
Cow position:
               
chr29:33143758-33143335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 144
               

               
Conread position:
               
60-546
               

               
Cow position:
               
chr29:9801396-9800929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 73
               

               
Conread position:
               
61-439
               

               
Cow position:
               
chr29:24669636-24669267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
82-554
               

               
Cow position:
               
chr29:34780084-34780553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
83-492
               

               
Cow position:
               
chr29:33101929-33101520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
108, 126
               

               
Conread position:
               
136-507
               

               
Cow position:
               
chr29:21545902-21546266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
163-523
               

               
Cow position:
               
chr29:5426027-5426390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
17-508
               

               
Cow position:
               
chr3:53568676-53568191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
37-551
               

               
Cow position:
               
chr3:64646948-64646432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
191, 7
               

               
Conread position:
               
38-428
               

               
Cow position:
               
chr3:36727892-36727498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 212
               

               
Conread position:
               
38-535
               

               
Cow position:
               
chr3:72390775-72390282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
38-564
               

               
Cow position:
               
chr3:14051395-14050882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
39-480
               

               
Cow position:
               
chr3:59465875-59465429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 167
               

               
Conread position:
               
39-486
               

               
Cow position:
               
chr3:29328074-29328519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr3:49604588-49605098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr3:68888713-68889229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
40-400
               

               
Cow position:
               
chr3:28947029-28947388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
40-510
               

               
Cow position:
               
chr3:21652853-21652380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
26, 161
               

               
Conread position:
               
51-543
               

               
Cow position:
               
chr3:66133982-66134469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 148
               

               
Conread position:
               
51-546
               

               
Cow position:
               
chr3:66409419-66409895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
59-514
               

               
Cow position:
               
chr3:62911027-62911482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
171, 142
               

               
Conread position:
               
61-508
               

               
Cow position:
               
chr3:30004146-30003710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
174, 104
               

               
Conread position:
               
63-485
               

               
Cow position:
               
chr3:71225458-71225870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
266, 116
               

               
Conread position:
               
65-538
               

               
Cow position:
               
chr3:13470919-13471392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
301, 129
               

               
Conread position:
               
65-557
               

               
Cow position:
               
chr3:56493828-56494335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
201, 123
               

               
Conread position:
               
71-405
               

               
Cow position:
               
chr3:80631362-80631693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
72-471
               

               
Cow position:
               
chr3:72872152-72871750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
227, 111
               

               
Conread position:
               
83-388
               

               
Cow position:
               
chr3:58105082-58104770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
88-537
               

               
Cow position:
               
chr3:58013432-58012989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
178, 110
               

               
Conread position:
               
93-487
               

               
Cow position:
               
chr3:73944944-73945353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
93-538
               

               
Cow position:
               
chr3:43483594-43483145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
107, 42
               

               
Conread position:
               
104-389
               

               
Cow position:
               
chr3:67451939-67451655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
110-480
               

               
Cow position:
               
chr3:11543140-11542772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 97
               

               
Conread position:
               
122-625
               

               
Cow position:
               
chr3:12768388-12767882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 146
               

               
Conread position:
               
155-538
               

               
Cow position:
               
chr3:22867229-22867605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
33-532
               

               
Cow position:
               
chr4:29826528-29827009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
38-546
               

               
Cow position:
               
chr4:29134069-29134570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
21, 154
               

               
Conread position:
               
39-494
               

               
Cow position:
               
chr4:40650007-40650469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 124
               

               
Conread position:
               
39-517
               

               
Cow position:
               
chr4:54191798-54191323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr4:46579701-46579206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
39-536
               

               
Cow position:
               
chr4:49828881-49828398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 170
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr4:36025607-36026122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 71
               

               
Conread position:
               
40-291
               

               
Cow position:
               
chr4:41594293-41594045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
41-442
               

               
Cow position:
               
chr4:36755428-36755029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
41-458
               

               
Cow position:
               
chr4:68362645-68362226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
41-461
               

               
Cow position:
               
chr4:34054650-34055072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
41-540
               

               
Cow position:
               
chr4:57206273-57205788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
45-507
               

               
Cow position:
               
chr4:12720769-12720325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
51-544
               

               
Cow position:
               
chr4:6612537-6613018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
59-557
               

               
Cow position:
               
chr4:57557382-57556895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
207, 134
               

               
Conread position:
               
60-534
               

               
Cow position:
               
chr4:18859382-18859849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
220, 108
               

               
Conread position:
               
63-414
               

               
Cow position:
               
chr4:22567517-22567165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
64-479
               

               
Cow position:
               
chr4:36662732-36663130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
169, 88
               

               
Conread position:
               
66-551
               

               
Cow position:
               
chr4:23888561-23889043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
67-535
               

               
Cow position:
               
chr4:34999964-35000434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
257, 132
               

               
Conread position:
               
67-557
               

               
Cow position:
               
chr4:13879819-13879337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
236, 84
               

               
Conread position:
               
70-384
               

               
Cow position:
               
chr4:61537606-61537298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
145, 123
               

               
Conread position:
               
70-554
               

               
Cow position:
               
chr4:61128586-61129067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 60
               

               
Conread position:
               
71-538
               

               
Cow position:
               
chr4:44047154-44046688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
71-540
               

               
Cow position:
               
chr4:66100115-66100575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 9
               

               
Conread position:
               
87-334
               

               
Cow position:
               
chr4:33049089-33049336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
113, 200
               

               
Conread position:
               
90-546
               

               
Cow position:
               
chr4:39222694-39222233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 117
               

               
Conread position:
               
96-537
               

               
Cow position:
               
chr4:50809656-50809218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
134, 103
               

               
Conread position:
               
122-513
               

               
Cow position:
               
chr4:35575750-35575357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
102, 77
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr5:16309368-16309097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
38-446
               

               
Cow position:
               
chr5:57965897-57966310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
38-501
               

               
Cow position:
               
chr5:50622480-50622939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
38-528
               

               
Cow position:
               
chr5:55112988-55112500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 171
               

               
Conread position:
               
38-551
               

               
Cow position:
               
chr5:21119407-21118891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 167
               

               
Conread position:
               
39-368
               

               
Cow position:
               
chr5:17887766-17888096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
39-477
               

               
Cow position:
               
chr5:35967947-35967512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 163
               

               
Conread position:
               
39-502
               

               
Cow position:
               
chr5:40709278-40708796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 228
               

               
Conread position:
               
39-505
               

               
Cow position:
               
chr5:27485852-27485377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
39-513
               

               
Cow position:
               
chr5:56443021-56442551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr5:54951353-54951850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-537
               

               
Cow position:
               
chr5:42918465-42918969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 164
               

               
Conread position:
               
39-542
               

               
Cow position:
               
chr5:64389290-64388784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 243
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr5:13806997-13807509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr5:55631829-55631313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
48-542
               

               
Cow position:
               
chr5:69752857-69753361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 150
               

               
Conread position:
               
52-542
               

               
Cow position:
               
chr5:5441769-5441290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
58-426
               

               
Cow position:
               
chr5:7066064-7065701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
307, 8
               

               
Conread position:
               
60-392
               

               
Cow position:
               
chr5:15765129-15764790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
62-461
               

               
Cow position:
               
chr5:4413567-4413170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
78-517
               

               
Cow position:
               
chr5:74733869-74733433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
83-538
               

               
Cow position:
               
chr5:49070097-49070545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 115
               

               
Conread position:
               
90-530
               

               
Cow position:
               
chr5:70289205-70289632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
141, 58
               

               
Conread position:
               
3-535
               

               
Cow position:
               
chr6:15155033-15154517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
17-575
               

               
Cow position:
               
chr6:20093787-20094346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
30-499
               

               
Cow position:
               
chr6:35248607-35248147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
34-538
               

               
Cow position:
               
chr6:18666457-18666955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
38-560
               

               
Cow position:
               
chr6:23811462-23810939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
39-388
               

               
Cow position:
               
chr6:16276641-16276287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 219
               

               
Conread position:
               
39-436
               

               
Cow position:
               
chr6:54080019-54079633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 87
               

               
Conread position:
               
39-488
               

               
Cow position:
               
chr6:28156363-28156814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 164
               

               
Conread position:
               
39-528
               

               
Cow position:
               
chr6:53381023-53380550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr6:827927-828416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr6:17631866-17632359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
39-570
               

               
Cow position:
               
chr6:6039726-6039196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
45-557
               

               
Cow position:
               
chr6:66952818-66953335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
56-217
               

               
Cow position:
               
chr6:24234087-24234246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
58-425
               

               
Cow position:
               
chr6:26868165-26867807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
63-533
               

               
Cow position:
               
chr6:2052680-2053132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 131
               

               
Conread position:
               
78-557
               

               
Cow position:
               
chr6:49380136-49380605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
166, 15
               

               
Conread position:
               
79-557
               

               
Cow position:
               
chr6:34617030-34617496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
155, 65
               

               
Conread position:
               
83-483
               

               
Cow position:
               
chr6:38915451-38915054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr6:48473534-48473118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
113-554
               

               
Cow position:
               
chr6:36961634-36962065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
118-558
               

               
Cow position:
               
chr6:34503695-34504133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 90
               

               
Conread position:
               
4-535
               

               
Cow position:
               
chr7:16965742-16966295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
17-427
               

               
Cow position:
               
chr7:38993699-38993290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 173
               

               
Conread position:
               
38-446
               

               
Cow position:
               
chr7:5257914-5258321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
39-392
               

               
Cow position:
               
chr7:28880306-28879956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
39-435
               

               
Cow position:
               
chr7:68685261-68684868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-551
               

               
Cow position:
               
chr7:54895222-54895724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
39-557
               

               
Cow position:
               
chr7:29743408-29743923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
40-390
               

               
Cow position:
               
chr7:30990423-30990770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
40-390
               

               
Cow position:
               
chr7:31010509-31010856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
40-478
               

               
Cow position:
               
chr7:10391614-10392050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
16, 131
               

               
Conread position:
               
40-626
               

               
Cow position:
               
chr7:30023803-30024384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
187, 153
               

               
Conread position:
               
40-636
               

               
Cow position:
               
chr7:59086860-59086257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
41-430
               

               
Cow position:
               
chr7:11908282-11907898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
41-552
               

               
Cow position:
               
chr7:36734042-36733555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 160
               

               
Conread position:
               
46-558
               

               
Cow position:
               
chr7:54186420-54186929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
51-200
               

               
Cow position:
               
chr7:5148516-5148665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
58-409
               

               
Cow position:
               
chr7:1548592-1548940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
59-411
               

               
Cow position:
               
chr7:57038241-57038591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
174, 94
               

               
Conread position:
               
59-481
               

               
Cow position:
               
chr7:24224749-24224322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
65, 145
               

               
Conread position:
               
61-388
               

               
Cow position:
               
chr7:51923365-51923045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
304, 75
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr7:8605474-8605064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr8:25269333-25269108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
19-551
               

               
Cow position:
               
chr8:31625102-31624570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 194
               

               
Conread position:
               
38-337
               

               
Cow position:
               
chr8:28057104-28057387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
228, 30
               

               
Conread position:
               
38-551
               

               
Cow position:
               
chr8:28326117-28326627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 167
               

               
Conread position:
               
39-200
               

               
Cow position:
               
chr8:37303486-37303326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
39-277
               

               
Cow position:
               
chr8:10346820-10347059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
39-508
               

               
Cow position:
               
chr8:33652653-33653120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-511
               

               
Cow position:
               
chr8:5263301-5263767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
39-530
               

               
Cow position:
               
chr8:26483778-26484269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
122, 127
               

               
Conread position:
               
39-536
               

               
Cow position:
               
chr8:13214347-13214825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 115
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chr8:13738178-13737684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
39-549
               

               
Cow position:
               
chr8:25286162-25286666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
39-552
               

               
Cow position:
               
chr8:26886686-26886177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
39-558
               

               
Cow position:
               
chr8:24911868-24912382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
57-351
               

               
Cow position:
               
chr8:31559933-31559642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
176, 133
               

               
Conread position:
               
59-385
               

               
Cow position:
               
chr8:23256600-23256285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
257, 132
               

               
Conread position:
               
59-464
               

               
Cow position:
               
chr8:27543180-27543571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
169, 73
               

               
Conread position:
               
71-534
               

               
Cow position:
               
chr8:8272277-8272738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
117, 133
               

               
Conread position:
               
78-477
               

               
Cow position:
               
chr8:34876854-34876463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
78-558
               

               
Cow position:
               
chr8:44007649-44008109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
287, 62
               

               
Conread position:
               
83-345
               

               
Cow position:
               
chr8:37240684-37240423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
147, 84
               

               
Conread position:
               
84-528
               

               
Cow position:
               
chr8:30418754-30418314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
86-437
               

               
Cow position:
               
chr8:28261142-28260786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
114, 195
               

               
Conread position:
               
144-558
               

               
Cow position:
               
chr8:8227328-8227743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
163-482
               

               
Cow position:
               
chr8:538416-538734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
39-364
               

               
Cow position:
               
chr9:49636458-49636130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
39-388
               

               
Cow position:
               
chr9:8461840-8462185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr9:2682318-2681826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-535
               

               
Cow position:
               
chr9:11337410-11337901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
40-538
               

               
Cow position:
               
chr9:1984190-1983706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
42-337
               

               
Cow position:
               
chr9:47944158-47943881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
42-550
               

               
Cow position:
               
chr9:9986105-9986599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
51-279
               

               
Cow position:
               
chr9:18407087-18407316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
51-376
               

               
Cow position:
               
chr9:44372116-44372434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
58-557
               

               
Cow position:
               
chr9:26190468-26189973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
253, 122
               

               
Conread position:
               
59-352
               

               
Cow position:
               
chr9:16010568-16010862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 95
               

               
Conread position:
               
59-504
               

               
Cow position:
               
chr9:46237438-46237885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
55, 138
               

               
Conread position:
               
78-371
               

               
Cow position:
               
chr9:57815789-57815498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 131
               

               
Conread position:
               
78-534
               

               
Cow position:
               
chr9:371437-371882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
155, 113
               

               
Conread position:
               
78-538
               

               
Cow position:
               
chr9:20989093-20988632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
155, 124
               

               
Conread position:
               
81-558
               

               
Cow position:
               
chr9:52753431-52753904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
83-478
               

               
Cow position:
               
chr9:9311280-9311670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
150, 115
               

               
Conread position:
               
83-535
               

               
Cow position:
               
chr9:56484588-56484133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
228, 68
               

               
Conread position:
               
87-537
               

               
Cow position:
               
chr9:52912433-52912867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
102-538
               

               
Cow position:
               
chr9:52667032-52666598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 100
               

               
Conread position:
               
113-599
               

               
Cow position:
               
chr9:39215387-39214905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
248, 90
               

               
Conread position:
               
135-558
               

               
Cow position:
               
chr9:29082825-29083249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
66, 73
               

               
Conread position:
               
142-481
               

               
Cow position:
               
chr9:44218578-44218232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
169-501
               

               
Cow position:
               
chr9:28786049-28785716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
17-314
               

               
Cow position:
               
chrX:40517350-40517058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
17-556
               

               
Cow position:
               
chrX:11501020-11500481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
215, 185
               

               
Conread position:
               
19-429
               

               
Cow position:
               
chrX:31981860-31982273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 181
               

               
Conread position:
               
39-360
               

               
Cow position:
               
chrX:966235-965916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
39-364
               

               
Cow position:
               
chrX:221266-220941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
39-378
               

               
Cow position:
               
chrX:11509813-11509476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
39-406
               

               
Cow position:
               
chrX:2276547-2276901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 129
               

               
Conread position:
               
39-414
               

               
Cow position:
               
chrX:9154101-9153731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
39-431
               

               
Cow position:
               
chrX:33003997-33003603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 141
               

               
Conread position:
               
39-437
               

               
Cow position:
               
chrX:39383338-39383734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
227, 167
               

               
Conread position:
               
39-478
               

               
Cow position:
               
chrX:13404604-13405046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
40, 169
               

               
Conread position:
               
39-482
               

               
Cow position:
               
chrX:35833151-35832720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
39-497
               

               
Cow position:
               
chrX:41879190-41879644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
186, 94
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chrX:13601497-13601991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 155
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chrX:23831705-23832186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
39-538
               

               
Cow position:
               
chrX:24006081-24006584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
39-554
               

               
Cow position:
               
chrX:8530281-8529767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
39-557
               

               
Cow position:
               
chrX:2790981-2790463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 163
               

               
Conread position:
               
40-446
               

               
Cow position:
               
chrX:33172218-33172625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 167
               

               
Conread position:
               
40-531
               

               
Cow position:
               
chrX:21191618-21191119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 168
               

               
Conread position:
               
41-535
               

               
Cow position:
               
chrX:39559913-39560406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chrX:18799544-18799779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 165
               

               
Conread position:
               
45-462
               

               
Cow position:
               
chrX:23382436-23382864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 108
               

               
Conread position:
               
58-453
               

               
Cow position:
               
chrX:10457423-10457030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
90, 99
               

               
Conread position:
               
58-479
               

               
Cow position:
               
chrX:1048623-1048197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
58-552
               

               
Cow position:
               
chrX:21031651-21031144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
142, 206
               

               
Conread position:
               
67-517
               

               
Cow position:
               
chrX:30151881-30152332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
163, 87
               

               
Conread position:
               
67-535
               

               
Cow position:
               
chrX:20869528-20869981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
83-364
               

               
Cow position:
               
chrX:18597454-18597729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
183, 135
               

               
Conread position:
               
83-390
               

               
Cow position:
               
chrX:7393973-7394273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 125
               

               
Conread position:
               
86-538
               

               
Cow position:
               
chrX:32002725-32003176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
144, 116
               

               
Conread position:
               
88-351
               

               
Cow position:
               
chrX:27384944-27385205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
88-534
               

               
Cow position:
               
chrX:18769592-18769166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
76, 83
               

               
Conread position:
               
99-552
               

               
Cow position:
               
chrX:25144760-25144329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
116-540
               

               
Cow position:
               
chrX:17901842-17902249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
209, 65
               

               
Conread position:
               
143-535
               

               
Cow position:
               
chrX:8641429-8641036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
157-538
               

               
Cow position:
               
chrX:46929442-46929813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
76, 45