Cow genome map

Conread name: mE6-MI-P-E6-ahq-e-08-1-UM.s1

Conread position: 485-615
Cow position: chr1:56658546-56658670 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 489-610
Cow position: chr1:98311095-98311221 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 536-618
Cow position: chr1:91066025-91065943 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 74
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-623
Cow position: chr1:2935297-2935384 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr1:65883346-65883434 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-620
Cow position: chr1:69542553-69542636 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 74
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 543-624
Cow position: chr1:43855428-43855509 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 73
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-621
Cow position: chr10:38386126-38386041 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-621
Cow position: chr10:55395877-55395792 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 543-620
Cow position: chr10:35108675-35108752 (view UCSC Genome Browser custom track)
Alignm length: 78
Alignm identity: 71
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr11:15591370-15591282 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr11:75874662-75874574 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-624
Cow position: chr11:18484090-18484003 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 537-624
Cow position: chr11:30172410-30172497 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 498-609
Cow position: chr12:16601333-16601449 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 536-620
Cow position: chr12:3872013-3872097 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 78
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 63

Conread position: 536-623
Cow position: chr12:34473520-34473433 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 538-623
Cow position: chr12:7110298-7110383 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 482-616
Cow position: chr13:25249420-25249551 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 535-623
Cow position: chr14:11750175-11750263 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr15:12656272-12656360 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr15:25208796-25208884 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 538-624
Cow position: chr15:10737819-10737905 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 543-622
Cow position: chr15:52791896-52791817 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 73
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 489-623
Cow position: chr16:52705962-52705832 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 491-616
Cow position: chr16:44260653-44260779 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 536-624
Cow position: chr16:8953547-8953459 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 537-618
Cow position: chr16:7550139-7550220 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 73
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-618
Cow position: chr16:29655442-29655523 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 74
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 538-624
Cow position: chr16:12454644-12454558 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 75
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 485-620
Cow position: chr17:1275582-1275714 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 536-620
Cow position: chr17:31480863-31480779 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr17:27058382-27058294 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-622
Cow position: chr17:23680979-23681064 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-624
Cow position: chr17:21718829-21718742 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 543-620
Cow position: chr17:30713520-30713597 (view UCSC Genome Browser custom track)
Alignm length: 78
Alignm identity: 71
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 543-623
Cow position: chr17:20157782-20157862 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 74
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 536-615
Cow position: chr18:5072324-5072245 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 72
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr18:41553272-41553184 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr18:51178620-51178532 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr18:52251761-52251672 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 548-624
Cow position: chr18:43796854-43796777 (view UCSC Genome Browser custom track)
Alignm length: 78
Alignm identity: 73
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 538-622
Cow position: chr19:11816607-11816522 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 533-624
Cow position: chr2:39187493-39187584 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 535-622
Cow position: chr2:73789709-73789622 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 538-621
Cow position: chr2:19137762-19137679 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 77
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 527-624
Cow position: chr20:34097788-34097690 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 536-624
Cow position: chr20:20312189-20312101 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr20:24310772-24310684 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 79
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 537-624
Cow position: chr20:15534132-15534045 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 485-618
Cow position: chr21:15729715-15729580 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 75

Conread position: 536-624
Cow position: chr21:38900953-38901041 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 482-610
Cow position: chr22:14835217-14835090 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 488-623
Cow position: chr22:16256482-16256621 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 74

Conread position: 536-621
Cow position: chr22:44410837-44410924 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 538-624
Cow position: chr22:30049298-30049212 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 548-619
Cow position: chr22:12315942-12316013 (view UCSC Genome Browser custom track)
Alignm length: 72
Alignm identity: 68
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 535-622
Cow position: chr23:8378913-8378826 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-616
Cow position: chr23:19274226-19274306 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 72
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 543-622
Cow position: chr24:35466892-35466813 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 72
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr25:13565210-13565122 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 543-622
Cow position: chr25:21885491-21885412 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 72
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-621
Cow position: chr26:6485888-6485803 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 77
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 536-622
Cow position: chr27:25000137-25000223 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 538-622
Cow position: chr27:18767254-18767338 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 536-624
Cow position: chr28:3678490-3678578 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 537-617
Cow position: chr28:4873192-4873112 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 72
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 490-611
Cow position: chr29:40166262-40166382 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 55, 88

Conread position: 214-429
Cow position: chr3:28556478-28556251 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 117, 5

Conread position: 416-544
Cow position: chr3:28556239-28556112 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 112
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 44, 0

Conread position: 533-622
Cow position: chr3:10347807-10347896 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-618
Cow position: chr3:39909556-39909474 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 74
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 537-616
Cow position: chr3:31804667-31804588 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 73
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 543-622
Cow position: chr3:78071683-78071604 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 74
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 536-621
Cow position: chr4:49794768-49794853 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 543-616
Cow position: chr4:13831727-13831654 (view UCSC Genome Browser custom track)
Alignm length: 74
Alignm identity: 69
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 543-622
Cow position: chr4:19542275-19542354 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 73
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 486-618
Cow position: chr5:30294993-30295131 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 82

Conread position: 533-624
Cow position: chr5:33273847-33273938 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 536-621
Cow position: chr5:2288115-2288030 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 486-597
Cow position: chr6:4791635-4791749 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 536-624
Cow position: chr6:23401829-23401741 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-622
Cow position: chr7:30011997-30012083 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 536-623
Cow position: chr7:11066640-11066725 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 535-624
Cow position: chr8:43112715-43112626 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 543-624
Cow position: chr8:53719811-53719729 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 75
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 544-624
Cow position: chr8:39455206-39455287 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 74
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 536-622
Cow position: chr9:23541497-23541584 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 526-623
Cow position: chrX:25282869-25282772 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 527-620
Cow position: chrX:11717578-11717485 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 536-615
Cow position: chrX:23497542-23497463 (view UCSC Genome Browser custom track)
Alignm length: 80
Alignm identity: 73
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 536-620
Cow position: chrX:5097638-5097555 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 536-621
Cow position: chrX:42161001-42161088 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 60, 0